Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 6416 mainline packages:

3dtk open3d py-testinfra
3proxy openal-soft py-testpath
abacus openbabel py-testrepository
abduco openblas py-testresources
abi-compliance-checker opencarp py-testscenarios
abi-dumper opencascade py-testtools
abinit opencl-c-headers py-tetoolkit
abseil-cpp opencl-clhpp py-text-unidecode
abyss opencl-headers py-textblob
accfft opencoarrays py-texttable
acct opencv py-tfdlpack
accumulo opendatadetector py-theano
ace opendx py-thinc
ack openexr py-thirdorder
acl openfast py-threadpoolctl
acpica-tools openfdtd py-tifffile
acpid openfoam py-timm
activeharmony openfoam-org py-tinyarray
activemq openfst py-tokenize-rt
acts opengl py-tokenizers
addrwatch openglu py-toml
adept-utils openimageio py-tomli
adf openipmi py-tomli-w
adiak openjdk py-tomlkit
adios openjpeg py-tomopy
adios2 openkim-models py-toolz
adlbx openldap py-toposort
admixtools openlibm py-torch
adms openloops py-torch-cluster
adol-c openmc py-torch-geometric
advancecomp openmm py-torch-nvidia-apex
adwaita-icon-theme openmolcas py-torch-scatter
aegean openmpi py-torch-sparse
aeskeyfind openmx py-torch-spline-conv
aespipe opennurbs py-torchaudio
agile openpa py-torchfile
agrep openpbs py-torchgeo
aida openpmd-api py-torchmeta
akantu openrasmol py-torchmetrics
alan openresty py-torchsummary
albany openscenegraph py-torchtext
albert openslide py-torchvision
alembic openslp py-tornado
alglib openspeedshop py-tox
allpaths-lg openspeedshop-utils py-tpot
alluxio openssh py-tqdm
alpaka openssl py-traceback2
alpgen openstf py-traitlets
alps opensubdiv py-traits
alquimia opentsdb py-traitsui
alsa-lib openturns py-transformers
aluminum openvdb py-transforms3d
ambari openwsman py-treehash
amber opium py-triangle
amdblis optional-lite py-trojanzoo-sphinx-theme
amdfftw optipng py-tuiview
amdlibflame opus py-tweedledum
amdlibm or-tools py-twine
amdscalapack oracle-instant-client py-twisted
amg oras py-typed-ast
amg2013 orbit2 py-typeguard
amgx orc py-typesentry
aml orca py-typing
amp orfm py-typing-extensions
ampl orientdb py-tzlocal
ampliconnoise orthofiller py-ucsf-pyem
amr-wind orthofinder py-ucx-py
amrex orthomcl py-uhi
amrvis osi py-ujson
anaconda2 osmctools py-umalqurra
anaconda3 osqp py-umi-tools
andi ossp-uuid py-uncertainties
angsd osu-micro-benchmarks py-unicycler
ant otf py-unidecode
antimony otf2 py-unittest2
antlr ovito py-unittest2py3k
ants p11-kit py-unshare
aocc p3dfft3 py-update-checker
aocl-sparse p4est py-uproot
aoflagger p7zip py-uproot3
aom pacbio-daligner py-uproot3-methods
aomp pacbio-damasker py-uproot4
apachetop pacbio-dazz-db py-uritemplate
apcomp pacbio-dextractor py-urllib3
ape pacifica-cli py-urwid
aperture-photometry packmol py-us
apex pacparser py-usgs
apfel pacvim py-utils
apktool pagit py-uvloop
apple-libunwind pagmo py-uvw
apple-libuuid pagmo2 py-uwsgi
applewmproto pajeng py-vcf-kit
appres pal py-vcrpy
apptainer palisade-development py-vcstool
apr paml py-vcstools
apr-util panda py-vcversioner
aragorn pandaseq py-vector
arbor pandoc py-vector-quantize-pytorch
arborx pango py-vermin
archer pangolin py-versioneer
argobots pangomm py-vine
argon2 papi py-virtualenv
argp-standalone papyrus py-virtualenv-clone
args paradiseo py-virtualenvwrapper
argtable parallel py-visdom
aria2 parallel-netcdf py-voluptuous
arm parallelio py-vsc-base
arm-forge parallelmergetree py-vsc-install
armadillo paraver py-vsts
armpl paraview py-vsts-cd-manager
arpack-ng parflow py-walinuxagent
arrayfire parmetis py-wand
arrow parmgridgen py-wandb
asagi parmmg py-warlock
ascent parquet-cpp py-warpx
asciidoc parquet-format py-wasabi
asciidoc-py3 parsec py-watchdog
asdcplib parsimonator py-wcsaxes
asdf-cxx parsplice py-wcwidth
asio partitionfinder py-weave
aspa pasta py-webargs
aspcud pastix py-webencodings
aspect patch py-webkit-server
aspell patchelf py-weblogo
aspell6-de patchutils py-webob
aspell6-en pathfinder py-websocket-client
aspell6-es pax-utils py-websockets
aspera-cli pbbam py-werkzeug
assimp pbmpi py-wget
astra pbsuite py-whatshap
astral pciutils py-wheel
astyle pcl py-whichcraft
at-spi2-atk pcma py-whoosh
at-spi2-core pcre py-widgetsnbextension
atf pcre2 py-wincertstore
athena pdc py-word2number
atk pdf2svg py-wordcloud
atlas pdftk py-workload-automation
atmi pdsh py-wradlib
atom-dft pdt py-wrapt
atompaw pegtl py-wsproto
atop pennant py-wstool
attr percept py-wub
audacious percona-server py-wurlitzer
audacity perfstubs py-ww
audit-userspace perl py-wxmplot
augustus perl-acme-damn py-wxpython
authd perl-algorithm-diff py-x21
authselect perl-alien-build py-xarray
autoconf perl-alien-libxml2 py-xattr
autoconf-archive perl-alien-svn py-xdot
autodiff perl-app-cmd py-xenv
autodock-gpu perl-array-utils py-xgboost
autodock-vina perl-b-hooks-endofscope py-xlrd
autofact perl-bio-searchio-hmmer py-xlsxwriter
autogen perl-bioperl py-xlwt
automaded perl-bit-vector py-xmlrunner
automake perl-cairo py-xmltodict
avizo perl-capture-tiny py-xonsh
aws-parallelcluster perl-carp-clan py-xopen
awscli perl-cgi py-xpyb
axel perl-class-data-inheritable py-xrootdpyfs
axl perl-class-inspector py-xvfbwrapper
axom perl-class-load py-xxhash
babelflow perl-class-load-xs py-yacs
babeltrace perl-clone py-yahmm
bacio perl-clone-choose py-yajl
backupninja perl-compress-raw-bzip2 py-yamlreader
bam-readcount perl-compress-raw-zlib py-yapf
bamaddrg perl-config-general py-yarl
bamdst perl-contextual-return py-yaspin
bamtools perl-cpan-meta-check py-yolk3k
bamutil perl-data-dumper py-youtube-dl
banner perl-data-optlist py-yq
bannergrab perl-data-stag py-yt
barrnap perl-date-manip py-ytopt
bart perl-db-file py-ytopt-autotune
barvinok perl-dbd-mysql py-zarr
bash perl-dbd-pg py-zc-buildout
bash-completion perl-dbd-sqlite py-zc-lockfile
bashtop perl-dbi py-zict
bat perl-devel-cycle py-zipfile-deflate64
batchedblas perl-devel-globaldestruction py-zipp
batctl perl-devel-overloadinfo py-zope-event
bats perl-devel-stacktrace py-zope-interface
baurmc perl-devel-symdump py-zxcvbn
bazel perl-digest-md5 pygmo
bbcp perl-dist-checkconflicts pythia6
bbmap perl-encode-locale pythia8
bc perl-error python
bcache perl-eval-closure q-e-sirius
bcftools perl-exception-class qbank
bcl2fastq2 perl-exporter-lite qbox
bdftopcf perl-exporter-tiny qca
bdii perl-extutils-config qcachegrind
bdw-gc perl-extutils-depends qd
beagle perl-extutils-helpers qemu
beakerlib perl-extutils-installpaths qgis
bear perl-extutils-makemaker qgraf
beast-tracer perl-extutils-pkgconfig qhull
beast1 perl-ffi-checklib qjson
beast2 perl-file-chdir qmcpack
bedops perl-file-copy-recursive qmd-progress
bedtools2 perl-file-homedir qnnpack
beforelight perl-file-listing qorts
benchmark perl-file-pushd qperf
berkeley-db perl-file-sharedir-install qrupdate
berkeleygw perl-file-slurp qscintilla
bertini perl-file-slurp-tiny qt
bgpdump perl-file-slurper qt-creator
bib2xhtml perl-file-which qtgraph
bigdft-atlab perl-font-ttf qthreads
bigdft-chess perl-forks qtkeychain
bigdft-core perl-fth qualimap
bigdft-futile perl-gd quantum-espresso
bigdft-libabinit perl-gdgraph quartz
bigdft-psolver perl-gdgraph-histogram qucs
bigdft-spred perl-gdtextutil quicksilver
bigdft-suite perl-getopt-tabular quinoa
bigreqsproto perl-graph quota
bind9 perl-graph-readwrite qwt
binutils perl-hash-merge qwtpolar
bioawk perl-html-parser r
biobambam2 perl-html-tagset r-a4
biobloom perl-http-cookies r-a4base
biopieces perl-http-daemon r-a4classif
bird perl-http-date r-a4core
bismark perl-http-message r-a4preproc
bison perl-http-negotiate r-a4reporting
bitlbee perl-inline r-abadata
bitmap perl-inline-c r-abaenrichment
bitsery perl-io-all r-abind
blackhat perl-io-compress r-absseq
blaspp perl-io-html r-acde
blasr perl-io-prompt r-acepack
blasr-libcpp perl-io-sessiondata r-acgh
blast-legacy perl-io-socket-ssl r-acme
blast-plus perl-io-string r-ada
blast2go perl-io-stringy r-adabag
blat perl-io-tty r-ade4
blaze perl-ipc-run r-adegenet
blis perl-json r-adegraphics
bliss perl-libwww-perl r-adephylo
blitz perl-libxml-perl r-adespatial
blktrace perl-list-moreutils r-adgoftest
bloaty perl-list-moreutils-xs r-adsplit
blogbench perl-log-log4perl r-aer
blt perl-logger-simple r-afex
bmake perl-lwp-mediatypes r-affxparser
bmi perl-lwp-protocol-https r-affy
bml perl-mailtools r-affycomp
bohrium perl-math-bezier r-affycompatible
boinc-client perl-math-cdf r-affycontam
bolt perl-math-cephes r-affycoretools
bonniepp perl-math-matrixreal r-affydata
bookleaf-cpp perl-math-round r-affyexpress
boost perl-math-vecstat r-affyilm
boostmplcartesianproduct perl-mce r-affyio
botan perl-mni-perllib r-affypdnn
bowtie perl-module-build r-affyplm
bowtie2 perl-module-build-tiny r-affyqcreport
boxlib perl-module-implementation r-affyrnadegradation
bpp-core perl-module-runtime r-agdex
bpp-phyl perl-module-runtime-conflicts r-agilp
bpp-phyl-omics perl-moose r-agimicrorna
bpp-popgen perl-mozilla-ca r-aims
bpp-seq perl-mro-compat r-aldex2
bpp-seq-omics perl-namespace-clean r-allelicimbalance
bpp-suite perl-net-http r-alpine
bracken perl-net-scp-expect r-als
braker perl-net-ssleay r-alsace
branson perl-number-format r-altcdfenvs
breakdancer perl-object-insideout r-amap
bref3 perl-package-deprecationmanager r-amelia
breseq perl-package-stash r-ampliqueso
bridger perl-package-stash-xs r-analysispageserver
brigand perl-padwalker r-anaquin
brltty perl-parallel-forkmanager r-aneufinder
brotli perl-params-util r-aneufinderdata
brpc perl-params-validate r-animation
brynet perl-parse-recdescent r-annaffy
bsseeker2 perl-path-tiny r-annotate
bubblewrap perl-pdf-api2 r-annotationdbi
bucky perl-pegex r-annotationfilter
buddy perl-perl-unsafe-signals r-annotationforge
bufr perl-perl-version r-annotationhub
bumpversion perl-perl4-corelibs r-anytime
busco perl-perl6-slurp r-aod
busybox perl-perlio-gzip r-ape
butter perl-perlio-utf8-strict r-aplot
butterflypack perl-readonly r-argparse
bwa perl-regexp-common r-aroma-light
bwtool perl-scalar-list-utils r-ash
byacc perl-scalar-util-numeric r-askpass
byobu perl-set-intervaltree r-assertive
byte-unixbench perl-set-intspan r-assertive-base
byteman perl-set-scalar r-assertive-code
bzip2 perl-soap-lite r-assertive-data
c perl-star-fusion r-assertive-data-uk
c-ares perl-statistics-basic r-assertive-data-us
c-blosc perl-statistics-descriptive r-assertive-datetimes
c-blosc2 perl-statistics-pca r-assertive-files
c-lime perl-sub-exporter r-assertive-matrices
c3d perl-sub-exporter-progressive r-assertive-models
ca-certificates-mozilla perl-sub-identify r-assertive-numbers
cabana perl-sub-install r-assertive-properties
cachefilesd perl-sub-name r-assertive-reflection
caffe perl-sub-uplevel r-assertive-sets
cairo perl-svg r-assertive-strings
cairomm perl-swissknife r-assertive-types
caliper perl-sys-sigaction r-assertthat
callflow perl-task-weaken r-backports
callpath perl-term-readline-gnu r-bamsignals
camellia perl-termreadkey r-base64
camp perl-test-cleannamespaces r-base64enc
camx perl-test-deep r-bayesm
canal perl-test-differences r-bayesplot
candle-benchmarks perl-test-exception r-bbmisc
cans perl-test-fatal r-beachmat
cantera perl-test-memory-cycle r-beanplot
canu perl-test-more r-beeswarm
cap3 perl-test-most r-bfast
capnproto perl-test-needs r-bfastspatial
capstone perl-test-output r-bglr
cardioid perl-test-requires r-bh
care perl-test-requiresinternet r-biasedurn
casacore perl-test-warn r-bibtex
cask perl-test-warnings r-bigalgebra
casper perl-text-csv r-bigmemory
cassandra perl-text-diff r-bigmemory-sri
catalyst perl-text-format r-bindr
catch2 perl-text-simpletable r-bindrcpp
cbc perl-text-soundex r-bio3d
cbench perl-text-unidecode r-biobase
cbflib perl-thread-queue r-biocfilecache
cblas perl-threads r-biocgenerics
cbtf perl-time-hires r-biocinstaller
cbtf-argonavis perl-time-piece r-biocio
cbtf-argonavis-gui perl-timedate r-biocmanager
cbtf-krell perl-tk r-biocneighbors
cbtf-lanl perl-try-tiny r-biocparallel
cc65 perl-uri r-biocsingular
ccache perl-uri-encode r-biocstyle
ccfits perl-want r-biocversion
ccls perl-www-robotrules r-biom-utils
ccs-qcd perl-xml-dom r-biomart
cctools perl-xml-dom-xpath r-biomartr
cdbfasta perl-xml-filter-buffertext r-biomformat
cdd perl-xml-libxml r-biostrings
cddlib perl-xml-libxslt r-biovizbase
cdecimal perl-xml-namespacesupport r-bit
cdhit perl-xml-parser r-bit64
cdo perl-xml-parser-lite r-bitops
ceed perl-xml-quote r-blavaan
cereal perl-xml-regexp r-blob
ceres-solver perl-xml-sax r-blockmodeling
cfitsio perl-xml-sax-base r-bmp
cgal perl-xml-sax-writer r-bookdown
cgdb perl-xml-simple r-boot
cgdcbxd perl-xml-twig r-boruta
cget perl-xml-writer r-brew
cgl perl-xml-xpathengine r-bridgesampling
cgm perl-yaml r-brio
cgns perl-yaml-libyaml r-brms
chaco pestpp r-brobdingnag
chai petaca r-broom
chameleon petsc r-bsgenome
changa pexsi r-bsgenome-hsapiens-ucsc-hg19
channelflow pfapack r-bslib
chaparral pfft r-bsseq
chapel pflask r-bumphunter
chaplin pflotran r-bwstest
charliecloud pfunit r-c50
charmpp pgdspider r-ca
chatterbug pgi r-cachem
check pgplot r-cairo
chgcentre phantompeakqualtools r-callr
chill phast r-car
chlorop phasta r-caracas
chombo phist r-cardata
chrony phoenix r-caret
chrpath photos r-caretensemble
cinch photos-f r-caroline
circos php r-category
cistem phrap-crossmatch-swat r-catools
citcoms phred r-cca
cityhash phylip r-ccp
cjson phylobayesmpi r-cdcfluview
ck phyluce r-cellranger
clamav picard r-champ
clamr picsar r-champdata
clapack picsarlite r-checkmate
clara pidx r-checkpoint
claw pig r-chemometrics
clblast pigz r-chipseq
cleaveland4 pika r-chron
cleverleaf pilon r-circlize
clfft pindel r-circstats
clhep pinentry r-class
cli11 pinfo r-classint
clinfo pipework r-cli
clingo piranha r-clipr
clingo-bootstrap pism r-clisymbols
cln pixman r-clue
cloc pixz r-cluster
cloog pkg-config r-clustergeneration
cloverleaf pkgconf r-clusterprofiler
cloverleaf3d pktools r-cner
clp planck-likelihood r-coda
clustal-omega plasma r-codetools
clustalw platypus r-codex
cmake plink r-coin
cmaq plink-ng r-colorspace
cmark plplot r-colourpicker
cminpack plumed r-combinat
cmocka ply r-commonmark
cmockery pmdk r-complexheatmap
cmor pmemkv r-compositions
cni-plugins pmerge r-compquadform
cnmem pmgr-collective r-condop
cnpy pmix r-conquer
cntk pmlib r-construct
cntk1bitsgd pnfft r-convevol
cnvnator pngquant r-copula
codar-cheetah pngwriter r-corhmm
code-server pnmpi r-corpcor
codec2 poamsa r-corrplot
codes pocl r-countrycode
coevp podio r-covr
cohmm podman r-cowplot
coin3d poke r-cpp11
coinhsl polymake r-crayon
coinutils poplddecay r-credentials
collectd poppler r-crosstalk
collier poppler-data r-crul
colm popt r-ctc
colordiff porta r-cubature
comd portage r-cubist
comgr portcullis r-curl
commons-lang ports-of-call r-dada2
commons-lang3 postgis r-data-table
commons-logging postgresql r-dbi
compadre povray r-dbplyr
compiz powerapi r-debugme
compose powertop r-decipher
compositeproto ppl r-delayedarray
conda4aarch64 pplacer r-delayedmatrixstats
conduit ppopen-appl-amr-fdm r-deldir
conmon ppopen-appl-bem r-dendextend
connect-proxy ppopen-appl-bem-at r-deoptim
conserver ppopen-appl-dem-util r-deoptimr
console-bridge ppopen-appl-fdm r-deriv
constype ppopen-appl-fdm-at r-desc
consul ppopen-appl-fem r-deseq
converge ppopen-appl-fvm r-deseq2
cool ppopen-at r-desolve
coral ppopen-math-mp r-devtools
corenlp ppopen-math-vis r-dexseq
coreutils prank r-diagrammer
corset precice r-dicekriging
cosbench predixy r-dichromat
cosign premake-core r-diffobj
cosma presentproto r-diffusionmap
cosmoflow-benchmark preseq r-digest
cosmomc presto r-diptest
cosp2 price r-dirichletmultinomial
costa primer3 r-dismo
cotter prinseq-lite r-distributional
couchdb printproto r-diversitree
cowsay prism r-dmrcate
cp2k prmon r-dnacopy
cpio prng r-do-db
cpmd probconsrna r-domc
cpp-argparse procenv r-doparallel
cpp-httplib process-in-process r-dorng
cpp-termcolor procps r-dose
cppad procps-ng r-dosnow
cppcheck prod-util r-dotcall64
cppcoro prodigal r-downloader
cppgsl professor r-dplyr
cpprestsdk profugusmc r-dqrng
cppunit proj r-dss
cppzmq prokka r-dt
cpu-features prometheus r-dtplyr
cpuinfo prophecy4f r-dtw
cqrlib protobuf r-dygraphs
cquery protobuf-c r-dynamictreecut
cracklib proxymngr r-e1071
cradl prrte r-earth
cram pruners-ninja r-ecp
cray-fftw ps-lite r-edger
cray-libsci psi4 r-effects
cray-mpich psimd r-elemstatlearn
cray-mvapich2 pslib r-ellipse
cray-pmi psm r-ellipsis
creduce psmc r-emmeans
crmc pstreams r-emmli
cromwell pthreadpool r-energy
cromwell-womtool pugixml r-enrichplot
cronie pulseaudio r-ensembldb
crtm pumi r-envstats
cryptopp pv r-ergm
cryptsetup pvm r-estimability
csa-c pxz r-europepmc
cscope py-3to2 r-evaluate
csdp py-4suite-xml r-evd
ctffind py-abcpy r-exactextractr
ctpl py-abipy r-exomecopy
ctre py-absl-py r-exomedepth
cub py-accimage r-experimenthub
cube py-acme-tiny r-expint
cube-blade py-adal r-expm
cubelib py-adb-enhanced r-factoextra
cubew py-addict r-factominer
cubist py-adios r-fansi
cuda py-advancedhtmlparser r-farver
cuda-memtest py-aenum r-fastcluster
cudnn py-affine r-fastdigest
cufflinks py-agate r-fastica
cunit py-agate-dbf r-fastmap
cupla py-agate-excel r-fastmatch
cups py-agate-sql r-fastmatrix
curl py-aiobotocore r-fda
cusz py-aiodns r-fdb-infiniummethylation-hg18
cutlang py-aiofiles r-fdb-infiniummethylation-hg19
cvector py-aiohttp r-fds
cvs py-aiohttp-cors r-ff
cxx py-aioitertools r-fftwtools
cxxopts py-aioredis r-fgsea
cxxtest py-aiosignal r-fields
cyrus-sasl py-aiosqlite r-filehash
czmq py-alabaster r-filelock
dakota py-alembic r-findpython
daligner py-altgraph r-fit-models
dalton py-amqp r-fitdistrplus
damageproto py-angel r-flashclust
damaris py-aniso8601 r-flexclust
damask py-annexremote r-flexmix
damask-grid py-ansi2html r-fnn
damask-mesh py-ansible r-fontawesome
damselfly py-antlr4-python3-runtime r-forcats
darshan-runtime py-anuga r-foreach
darshan-util py-anyio r-forecast
dash py-anytree r-foreign
datamash py-apache-beam r-formatr
dataspaces py-apache-libcloud r-formula
datatransferkit py-apex r-fpc
date py-apipkg r-fpcompare
dateutils py-appdirs r-fracdiff
davix py-applicationinsights r-fs
dbcsr py-appnope r-futile-logger
dbow2 py-apptools r-futile-options
dbus py-apscheduler r-future
dbus-glib py-arcgis r-future-apply
dbxtool py-archspec r-gamlss
dcap py-argcomplete r-gamlss-data
dcm2niix py-argh r-gamlss-dist
dcmtk py-argon2-cffi r-gamm4
dd4hep py-argon2-cffi-bindings r-gargle
ddd py-argparse r-gbm
dealii py-args r-gbrd
dealii-parameter-gui py-arrow r-gcrma
debbuild py-arviz r-gdalutilities
debugedit py-asciitree r-gdalutils
decentralized-internet py-asdf r-gdata
deconseq-standalone py-ase r-gdsfmt
dejagnu py-asgiref r-geiger
delly2 py-asn1crypto r-genefilter
delphes py-aspy-yaml r-genelendatabase
delta py-asserts r-genemeta
denovogear py-asteval r-geneplotter
dftbplus py-astor r-generics
dftd3-lib py-astpretty r-genetics
dftd4 py-astroid r-genie3
dftfe py-astropy r-genomeinfodb
dhpmm-f py-astropy-healpix r-genomeinfodbdata
dhtest py-astropy-helpers r-genomicalignments
dia py-asttokens r-genomicfeatures
dialign py-astunparse r-genomicranges
dialign-tx py-async-generator r-gensa
diamond py-async-lru r-geojsonsf
dicom3tools py-async-timeout r-geometries
diffmark py-asyncio r-geomorph
diffsplice py-asynctest r-geonames
diffutils py-atomicwrites r-geoquery
dihydrogen py-atpublic r-geor
dimemas py-atropos r-geosphere
ding-libs py-ats r-gert
dire py-attrs r-getopt
direnv py-audioread r-getoptlong
discovar py-autograd r-ggally
discovardenovo py-autograd-gamma r-ggbeeswarm
disktype py-automat r-ggbio
dislin py-autopep8 r-ggdendro
distcc py-auxlib r-ggforce
diy py-avro r-ggfun
dlib py-avro-json-serializer r-ggjoy
dlpack py-avro-python3 r-ggmap
dmd py-awesome-slugify r-ggplot2
dmidecode py-awkward r-ggplotify
dmlc-core py-awkward0 r-ggpubr
dmtcp py-awkward1 r-ggraph
dmxproto py-azote r-ggrepel
dnsmap py-azure-batch r-ggridges
dnsmasq py-azure-cli r-ggsci
dnstop py-azure-cli-command-modules-nspkg r-ggsignif
dnstracer py-azure-cli-core r-ggthemes
docbook-xml py-azure-cli-nspkg r-ggtree
docbook-xsl py-azure-cli-telemetry r-ggvis
dock py-azure-common r-gh
dos2unix py-azure-core r-gistr
dosfstools py-azure-cosmos r-git2r
dotconf py-azure-datalake-store r-gitcreds
dotnet-core-sdk py-azure-functions-devops-build r-glimma
double-conversion py-azure-graphrbac r-glmnet
doxygen py-azure-identity r-globaloptions
dpcpp py-azure-keyvault r-globals
dpdk py-azure-keyvault-certificates r-globaltest
draco py-azure-keyvault-keys r-glue
dracut py-azure-keyvault-nspkg r-gmodels
dramsim2 py-azure-keyvault-secrets r-gmp
dramsim3 py-azure-loganalytics r-go-db
dray py-azure-mgmt-advisor r-goftest
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dri3proto py-azure-mgmt-appconfiguration r-googledrive
drill py-azure-mgmt-applicationinsights r-googlesheets4
dropwatch py-azure-mgmt-authorization r-googlevis
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ds py-azure-mgmt-batchai r-gosemsim
dsdp py-azure-mgmt-billing r-goseq
dsfmt py-azure-mgmt-botservice r-gostats
dsqss py-azure-mgmt-cdn r-gower
dsrc py-azure-mgmt-cognitiveservices r-gparotation
dssp py-azure-mgmt-compute r-gplots
dtc py-azure-mgmt-consumption r-graph
dtcmp py-azure-mgmt-containerinstance r-graphlayouts
dtf py-azure-mgmt-containerregistry r-grbase
duperemove py-azure-mgmt-containerservice r-gridbase
dust py-azure-mgmt-core r-gridextra
dwz py-azure-mgmt-cosmosdb r-gridgraphics
dyninst py-azure-mgmt-datalake-analytics r-gsa
dysco py-azure-mgmt-datalake-store r-gsalib
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ea-utils py-azure-mgmt-deploymentmanager r-gsl
eagle py-azure-mgmt-devtestlabs r-gsodr
earlyoom py-azure-mgmt-dns r-gss
easi py-azure-mgmt-eventgrid r-gstat
easybuild py-azure-mgmt-eventhub r-gsubfn
ebms py-azure-mgmt-hdinsight r-gtable
ecbuild py-azure-mgmt-imagebuilder r-gtools
eccodes py-azure-mgmt-iotcentral r-gtrellis
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ecflow py-azure-mgmt-iothubprovisioningservices r-gwmodel
eckit py-azure-mgmt-keyvault r-hardhat
eclipse-gcj-parser py-azure-mgmt-kusto r-haven
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ecoslim py-azure-mgmt-managedservices r-hdf5r
ecp-data-vis-sdk py-azure-mgmt-managementgroups r-hdrcde
ecp-proxy-apps py-azure-mgmt-maps r-here
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editline py-azure-mgmt-media r-hh
editres py-azure-mgmt-monitor r-highr
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eem py-azure-mgmt-netapp r-hms
efivar py-azure-mgmt-network r-hoardr
eigen py-azure-mgmt-nspkg r-htmltable
eigenexa py-azure-mgmt-policyinsights r-htmltools
elasticsearch py-azure-mgmt-privatedns r-htmlwidgets
elemental py-azure-mgmt-rdbms r-httpcode
elfio py-azure-mgmt-recoveryservices r-httpuv
elfutils py-azure-mgmt-recoveryservicesbackup r-httr
elk py-azure-mgmt-redhatopenshift r-hwriter
elmerfem py-azure-mgmt-redis r-hypergraph
elpa py-azure-mgmt-relay r-ica
elsd py-azure-mgmt-reservations r-ids
elsdc py-azure-mgmt-resource r-igraph
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emboss py-azure-mgmt-servicefabric r-illuminahumanmethylationepicanno-ilm10b4-hg19
embree py-azure-mgmt-signalr r-illuminahumanmethylationepicmanifest
enca py-azure-mgmt-sql r-illuminaio
enchant py-azure-mgmt-sqlvirtualmachine r-imager
energyplus py-azure-mgmt-storage r-impute
entrezdirect py-azure-mgmt-trafficmanager r-influencer
entt py-azure-mgmt-web r-ini
environment-modules py-azure-multiapi-storage r-inline
enzo py-azure-nspkg r-insight
enzyme py-azure-storage-blob r-interactivedisplaybase
eospac py-azure-storage-common r-intervals
eq-r py-azure-storage-nspkg r-inum
er py-azureml-automl-core r-ipred
erfa py-azureml-core r-iranges
erlang py-azureml-dataprep r-irdisplay
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erne py-azureml-dataprep-rslex r-irlba
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esmf py-azureml-pipeline r-islr
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essl py-azureml-pipeline-steps r-isoband
esys-particle py-azureml-sdk r-isva
etcd py-azureml-telemetry r-iterators
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etsf-io py-azureml-train-core r-jaspar2018
eve py-azureml-train-restclients-hyperdrive r-jomo
evemu py-babel r-jpeg
everytrace py-backcall r-jquerylib
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evieext py-backports-entry-points-selectable r-jsonlite
evtgen py-backports-functools-lru-cache r-kegg-db
exa py-backports-lzma r-kegggraph
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exago py-backports-shutil-get-terminal-size r-kernlab
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exodusii py-bcolz r-laplacesdemon
exonerate py-bcrypt r-lars
exonerate-gff3 py-beancount r-later
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expect py-beniget r-latticeextra
express py-bids-validator r-lava
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eztrace py-billiard r-ldheatmap
f2c py-binaryornot r-leafem
f3d py-bintrees r-leaflet
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f90cache py-biom-format r-leafpop
fabtests py-biomine r-leaps
fairlogger py-biopandas r-learnbayes
faiss py-biopython r-leiden
fakechroot py-bitarray r-lfe
fakexrandr py-bitstring r-lhs
falcon py-black r-libcoin
fann py-bleach r-lifecycle
faodel py-blessed r-limma
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fastmath py-boost-histogram r-loo
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fastp py-boto3 r-lpsolveapi
fastphase py-botocore r-lsei
fastq-screen py-bottle r-lubridate
fastqc py-bottleneck r-lumi
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fasttransforms py-brian r-magick
fasttree py-brian2 r-magrittr
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faust py-bsddb3 r-maldiquant
fbgemm py-build r-manipulatewidget
fca py-bx-python r-mapplots
fcgi py-bz2file r-mapproj
fd-find py-cachecontrol r-maps
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fenics-ufcx py-cartopy r-matlab
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ferret py-cdo r-matrixstats
ffb py-cdsapi r-mclust
ffmpeg py-cekit r-mcmc
ffr py-celery r-mcmcglmm
ffsb py-cerberus r-mcmcpack
ffte py-certifi r-mco
fftw py-certipy r-mda
fftx py-cf-units r-memoise
fgsl py-cffconvert r-memuse
fides py-cffi r-mergemaid
figlet py-cfgrib r-metap
figtree py-cfgv r-methylumi
file py-cftime r-mgcv
filebench py-chai r-mgraster
filo py-chainer r-mice
filtlong py-chainmap r-microbenchmark
fimpute py-chalice r-mime
find-circ py-chardet r-minfi
findbugs py-charm4py r-miniui
findutils py-charset-normalizer r-minqa
fio py-checkm-genome r-misc3d
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fish py-cheetah3 r-mitml
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fj py-cherrypy r-mixtools
fjcontrib py-chronyk r-mlbench
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flac py-ci-sdr r-mlr
flann py-cinema-lib r-mlrmbo
flap py-cinemasci r-mmwrweek
flash py-citeproc-py r-mnormt
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fltk py-cmocean r-mzid
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folly py-colored r-nfactors
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form py-colormath r-nmof
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fortran py-colorspacious r-nnls
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foundationdb py-configobj r-nortest
fox py-configparser r-np
fp16 py-configspace r-npsurv
fpc py-connectionpool r-numderiv
fpchecker py-constantly r-oligoclasses
fping py-contextily r-openssl
fplll py-contextlib2 r-openxlsx
fpm py-contextvars r-optimx
fpocket py-control r-optparse
fqtrim py-convertdate r-ordinal
fr-hit py-convokit r-org-hs-eg-db
fraggenescan py-cookiecutter r-organismdbi
freebayes py-cookies r-packrat
freefem py-copulas r-pacman
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freeimage py-counter r-pamr
freeipmi py-cov-core r-pan
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fribidi py-cppheaderparser r-paramhelpers
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ftgl py-cssselect r-pbkrtest
ftjam py-csvkit r-pcamethods
ftk py-ctgan r-pcapp
ftobjectlibrary py-cudf r-pegas
ftxui py-cuml r-permute
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fujitsu-ssl2 py-cvxopt r-pheatmap
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g2 py-cyvcf2 r-pinfsc50
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g2o py-dadi r-pkgbuild
g2tmpl py-damask r-pkgcache
g4abla py-dask r-pkgconfig
g4emlow py-dask-glm r-pkgdepends
g4ensdfstate py-dask-ml r-pkgload
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g4ndl py-dataclasses r-plogr
g4neutronxs py-datacube r-plot3d
g4particlexs py-datalad r-plotly
g4photonevaporation py-datalad-container r-plotmo
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g4radioactivedecay py-datalad-metalad r-pls
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ganglia py-dbf r-polyclip
gapbs py-dbfread r-polynom
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gapfiller py-debtcollector r-poorman
garfieldpp py-debugpy r-popgenome
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gawk py-descartes r-processx
gbl py-devlib r-prodlim
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gcc py-dh-scikit-optimize r-progressr
gccmakedep py-dictdiffer r-proj
gccxml py-dill r-proj4
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gconf py-discover r-promises
gcta py-diskcache r-protgenerics
gdal py-distance r-proto
gdb py-distlib r-proxy
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gdl py-django r-pscbs
gdrcopy py-dlcpar r-pspline
geant4 py-dm-tree r-psych
geant4-data py-dnaio r-ptw
geant4-vmc py-docker r-purrr
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gemmlowp py-docopt r-qs
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genesis py-docutils-stubs r-quadprog
genfit py-dominate r-quantmod
gengeo py-dotnetcore2 r-quantreg
gengetopt py-downhill r-quantro
genie py-doxypy r-questionr
genomefinisher py-doxypypy r-quickplot
genometools py-dp-gp-cluster r-qvalue
genomeworks py-dpath r-r-cache
genrich py-drmaa r-r-methodss3
geode py-dryscrape r-r-oo
geoip py-duecredit r-r-utils
geoip-api-c py-dulwich r-r6
geopm py-dvc r-rainbow
geos py-dxchange r-randomfields
gettext py-dxfile r-randomfieldsutils
gflags py-earthengine-api r-randomforest
gfsio py-easybuild-easyblocks r-randomglm
gh py-easybuild-easyconfigs r-ranger
ghost py-easybuild-framework r-rann
ghostscript py-eccodes r-rapidjsonr
ghostscript-fonts py-ecdsa r-rapiserialize
giblib py-ecos r-rappdirs
giflib py-edffile r-raster
ginac py-editdistance r-rbgl
ginkgo py-efficientnet-pytorch r-rbibutils
giraph py-eg r-rbokeh
git py-einops r-rcmdcheck
git-annex py-elasticsearch r-rcolorbrewer
git-fat-git py-elephant r-rcpp
git-imerge py-emcee r-rcppannoy
git-lfs py-emoji r-rcpparmadillo
gitconddb py-empy r-rcppblaze
gl2ps py-entrypoints r-rcppcctz
glew py-enum34 r-rcppcnpy
glfmultiples py-envisage r-rcppdate
glfw py-ephem r-rcppde
glib py-epydoc r-rcppeigen
glib-networking py-espresso r-rcppgsl
glibmm py-espressopp r-rcpphnsw
glimmer py-et-xmlfile r-rcppparallel
glm py-etelemetry r-rcppprogress
global py-eventlet r-rcpptoml
globalarrays py-execnet r-rcppziggurat
glog py-executing r-rcurl
gloo py-exifread r-rda
glpk py-exodus-bundler r-rdpack
glproto py-extension-helpers r-readbitmap
gluegen py-extras r-readr
glusterfs py-ez-setup r-readxl
glvis py-f90wrap r-reams
gmake py-fabric r-recipes
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gmime py-falcon r-rematch
gmodel py-fallocate r-rematch2
gmp py-fastai r-remotes
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gmtsar py-fastcache r-reportingtools
gnat py-fastcluster r-repr
gnds py-fastcore r-reprex
gnome-common py-fastcov r-reproducible
gnuconfig py-fastdownload r-require
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gnuplot py-fasteners r-reshape2
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go py-fastrlock r-rex
go-bootstrap py-faststructure r-rfast
go-md2man py-fava r-rferns
gobject-introspection py-fenics-basix r-rgdal
goblin-hmc-sim py-fenics-dijitso r-rgenoud
goma py-fenics-dolfinx r-rgeos
google-crc32c py-fenics-ffc r-rgexf
googletest py-fenics-ffcx r-rgl
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goshimmer py-fenics-instant r-rgraphviz
gotcha py-fenics-ufl r-rhdf5
gource py-filelock r-rhdf5filters
gpdb py-filemagic r-rhdf5lib
gperf py-filterpy r-rhmmer
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gpi-2 py-fire r-rio
gpi-space py-fiscalyear r-rjags
gplates py-fisher r-rjava
gprolog py-fits-tools r-rjson
gptl py-fixtures r-rjsonio
gptune py-flake8 r-rlang
gpu-burn py-flake8-import-order r-rle
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gr-osmosdr py-flameprof r-rmarkdown
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grace py-flask-babel r-rmpfr
grackle py-flask-compress r-rmpi
gradle py-flask-cors r-rms
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grafana py-flask-socketio r-rmysql
grandr py-flatbuffers r-rnaseqmap
graph500 py-flatten-dict r-rncl
graphblast py-flawfinder r-rnexml
graphicsmagick py-flexmock r-rngtools
graphite2 py-flexx r-rnoaa
graphlib py-flit r-robust
graphmap py-flit-core r-robustbase
graphviz py-flufl-lock r-roc
grass py-flye r-rocr
graylog2-server py-fn-py r-rodbc
grep py-fonttools r-rook
grib-api py-formatizer r-rots
grib-util py-formulaic r-roxygen2
gridlab-d py-fortran-language-server r-rpart
grnboost py-fortranformat r-rpart-plot
groff py-fparser r-rpmm
gromacs py-fprettify r-rpostgres
gromacs-chain-coordinate py-fracridge r-rpostgresql
gromacs-swaxs py-freezegun r-rprojroot
grpc py-frozenlist r-rpsychi
gsettings-desktop-schemas py-fs r-rrblup
gsl py-fsspec r-rrcov
gslib py-ftfy r-rrpp
gtk-doc py-funcsigs r-rsamtools
gtkmm py-functools32 r-rsconnect
gtkorvo-atl py-funcy r-rsnns
gtkorvo-cercs-env py-fury r-rsolnp
gtkorvo-dill py-fusepy r-rspectra
gtkorvo-enet py-future r-rsqlite
gtkplus py-futures r-rstan
gtksourceview py-fuzzywuzzy r-rstantools
gts py-fypp r-rstatix
guacamole-client py-gast r-rstudioapi
guacamole-server py-gcovr r-rsvd
guidance py-gcs-oauth2-boto-plugin r-rtracklayer
guile py-gdbgui r-rtsne
gunrock py-gdc-client r-runit
gurobi py-gee-asset-manager r-runjags
gxsview py-geeadd r-ruv
gzip py-geeup r-rvcheck
h2database py-gemini r-rversions
h5bench py-genders r-rvest
h5cpp py-geneimpacts r-rviennacl
h5hut py-genshi r-rzmq
h5part py-gensim r-s2
h5utils py-geoalchemy2 r-s4vectors
h5z-zfp py-geocube r-samr
hacckernels py-geographiclib r-sandwich
hackrf-host py-geopandas r-sass
hadoop py-geoplot r-satellite
hadoop-xrootd py-geopy r-scaledmatrix
hal py-getorganelle r-scales
halc py-gevent r-scater
half py-gf256 r-scattermore
hama py-gffutils r-scatterpie
hapcut2 py-gimmik r-scatterplot3d
hapdip py-gin-config r-scrime
haploview py-git-review r-sctransform
haproxy py-gitdb r-scuttle
hardlink py-gitpython r-sdmtools
harfbuzz py-glmnet r-segmented
harminv py-glob2 r-selectr
hashcat py-globus-sdk r-seqinr
haveged py-gluoncv r-seqlogo
hazelcast py-gnuplot r-servr
hbase py-goatools r-sessioninfo
hbm-dramsim2 py-gooey r-seurat
hc py-google r-seuratobject
hcoll py-google-api-core r-sf
hdf py-google-api-python-client r-sfheaders
hdf-eos2 py-google-apitools r-sfsmisc
hdf-eos5 py-google-auth r-shadowtext
hdf5 py-google-auth-httplib2 r-shape
hdf5-blosc py-google-auth-oauthlib r-shiny
hdf5-vfd-gds py-google-cloud-core r-shinydashboard
hdf5-vol-async py-google-cloud-storage r-shinyfiles
hdf5-vol-external-passthrough py-google-crc32c r-shinyjs
hdf5-vol-log py-google-pasta r-shinystan
hdfview py-google-resumable-media r-shinythemes
healpix-cxx py-googleapis-common-protos r-shortread
heaptrack py-googledrivedownloader r-siggenes
heasoft py-gosam r-simpleaffy
heffte py-gpaw r-singlecellexperiment
helib py-gpustat r-sitmo
helics py-gputil r-sm
help2man py-gpy r-smoof
henson py-gpyopt r-sn
hepmc py-gpytorch r-snakecase
hepmc3 py-gql r-snow
hepmcanalysis py-grandalf r-snowfall
heppdt py-graphql-core r-snprelate
heputils py-graphviz r-snpstats
hercules py-greenlet r-som
hermes py-grequests r-somaticsignatures
herwig3 py-griddataformats r-sourcetools
herwigpp py-grpcio r-sp
hevea py-grpcio-tools r-spacetime
hibench py-gsd r-spades
hic-pro py-gsi r-spades-addins
hicolor-icon-theme py-gsutil r-spades-core
hicops py-guidata r-spades-tools
highfive py-guiqwt r-spam
highwayhash py-gym r-sparsem
hiop py-h11 r-sparsematrixstats
hip py-h2 r-spatial
hip-rocclr py-h5glance r-spatialeco
hipace py-h5netcdf r-spatialpack
hipblas py-h5py r-spatialreg
hipcub py-h5sh r-spatstat
hipfft py-hacking r-spatstat-core
hipfort py-haphpipe r-spatstat-data
hipify-clang py-hatchet r-spatstat-geom
hipsolver py-hdbscan r-spatstat-linnet
hipsparse py-hdfs r-spatstat-sparse
hipsycl py-healpy r-spatstat-utils
hiredis py-heapdict r-spdata
hisat2 py-hep-ml r-spdep
hisea py-hepdata-converter r-speedglm
hive py-hepdata-lib r-spem
hivex py-hepdata-validator r-splancs
hmmer py-hepunits r-splitstackshape
hohqmesh py-hieroglyph r-sqldf
homer py-hiredis r-squarem
hoomd-blue py-hist r-squash
hoppet py-histbook r-sseq
hotspot py-histogrammar r-stabledist
hpcc py-histoprint r-stanheaders
hpccg py-holland-backup r-stargazer
hpcg py-horovod r-statmod
hpctoolkit py-hpack r-statnet-common
hpcviewer py-hpbandster r-stringfish
hpcx-mpi py-hpcbench r-stringi
hpddm py-hpccm r-stringr
hpgmg py-hstspreload r-strucchange
hping py-html2text r-strucchangercpp
hpl py-html5lib r-styler
hpx py-htmlgen r-subplex
hpx-kokkos py-htseq r-summarizedexperiment
hpx5 py-httpbin r-suppdists
hsa-rocr-dev py-httpcore r-survey
hsakmt py-httplib2 r-survival
hsakmt-roct py-httpretty r-sva
hsf-cmaketools py-httpstan r-svglite
hssp py-httptools r-sys
hstr py-httpx r-systemfonts
hto4l py-huggingface-hub r-tarifx
htop py-humanfriendly r-taxizedb
htslib py-humanize r-tclust
http-get py-hvac r-teachingdemos
http-load py-hypercorn r-tensor
http-parser py-hyperframe r-tensora
http-ping py-hyperlink r-terra
http-post py-hyperopt r-tester
httpd py-hypothesis r-testit
httperf py-ibm-cloud-sdk-core r-testthat
httpie py-ibm-watson r-tfbstools
httping py-ics r-tfisher
httpress py-identify r-tfmpvalue
hub py-idna r-th-data
hudi py-idna-ssl r-threejs
hugo py-illumina-utils r-tibble
hunspell py-ilmbase r-tictoc
hw-probe py-imageio r-tidycensus
hwdata py-imageio-ffmpeg r-tidygraph
hwloc py-imagesize r-tidyr
hybpiper py-imgaug r-tidyselect
hybrid-lambda py-iminuit r-tidytree
hybridsim py-immutables r-tidyverse
hydra py-importlib r-tiff
hydrogen py-importlib-metadata r-tigris
hyperfine py-importlib-resources r-timedate
hyperscan py-incremental r-tinytex
hyphen py-inference-schema r-tmixclust
hyphy py-inheritance r-tmvnsim
hypre py-iniconfig r-topgo
hypre-cmake py-iniparse r-treeio
hztool py-installer r-triebeard
i3 py-intel-openmp r-trimcluster
ibm-databroker py-intensity-normalization r-truncdist
ibm-java py-interface-meta r-truncnorm
ibmisc py-intervaltree r-trust
icarus py-invoke r-tseries
iceauth py-iocapture r-tsne
icedtea py-ipaddress r-ttr
icet py-ipdb r-tweenr
ico py-ipycanvas r-txdb-hsapiens-ucsc-hg18-knowngene
icu4c py-ipyevents r-txdb-hsapiens-ucsc-hg19-knowngene
id3lib py-ipykernel r-tximport
idba py-ipympl r-tximportdata
idl py-ipyparallel r-tzdb
iegenlib py-ipython r-ucminf
ignite py-ipython-cluster-helper r-udunits2
igprof py-ipython-genutils r-units
igraph py-ipyvtk-simple r-upsetr
igv py-ipywidgets r-urca
igvtools py-irpf90 r-urltools
ike-scan py-iso8601 r-usethis
ilmbase py-isodate r-utf8
ima-evm-utils py-isort r-uuid
imagemagick py-itk r-uwot
imake py-itsdangerous r-v8
imgui py-jaconv r-variantannotation
imlib2 py-jamo r-varselrf
imp py-jaraco-functools r-vcd
impalajit-llvm py-javaproperties r-vcfr
impute2 py-jdatetime r-vctrs
infernal py-jdcal r-vegan
influxdb py-jedi r-vfs
iniparser py-jeepney r-vgam
inputproto py-jellyfish r-vioplot
intel py-jinja2 r-vipor
intel-daal py-jinja2-time r-viridis
intel-gpu-tools py-jmespath r-viridislite
intel-gtpin py-joblib r-visnetwork
intel-ipp py-jplephem r-vroom
intel-llvm py-jprops r-vsn
intel-mkl py-jpype1 r-waldo
intel-mpi py-jsmin r-watermelon
intel-mpi-benchmarks py-json-get r-webshot
intel-oneapi-advisor py-json5 r-wgcna
intel-oneapi-ccl py-jsondiff r-whisker
intel-oneapi-compilers py-jsonpatch r-withr
intel-oneapi-dal py-jsonpath-ng r-wk
intel-oneapi-dnn py-jsonpickle r-xde
intel-oneapi-dpl py-jsonpointer r-xfun
intel-oneapi-inspector py-jsonref r-xgboost
intel-oneapi-ipp py-jsonschema r-xlconnect
intel-oneapi-ippcp py-junit-xml r-xlconnectjars
intel-oneapi-mkl py-jupyter r-xlsx
intel-oneapi-mpi py-jupyter-client r-xlsxjars
intel-oneapi-tbb py-jupyter-console r-xmapbridge
intel-oneapi-vpl py-jupyter-core r-xml
intel-oneapi-vtune py-jupyter-packaging r-xml2
intel-parallel-studio py-jupyter-packaging11 r-xnomial
intel-pin py-jupyter-packaging7 r-xopen
intel-tbb py-jupyter-server r-xtable
intel-xed py-jupyter-server-mathjax r-xts
interproscan py-jupyter-telemetry r-xvector
intltool py-jupyterhub r-yaimpute
ioapi py-jupyterlab r-yaml
ior py-jupyterlab-pygments r-yapsa
iozone py-jupyterlab-server r-yaqcaffy
ip py-jupyterlab-widgets r-yarn
ip2 py-jupytext r-yulab-utils
ipcalc py-kaggle r-zcompositions
iperf2 py-kaldiio r-zeallot
iperf3 py-keras r-zip
ipopt py-keras-applications r-zlibbioc
iproute2 py-keras-preprocessing r-zoo
iptraf-ng py-keras2onnx r3d
iq-tree py-kerberos rabbitmq
irep py-keyboard racket
isaac py-keyring racon
isaac-server py-keyrings-alt raft
isc-dhcp py-keystoneauth1 ragel
isescan py-kitchen raja
isl py-kiwisolver ramulator
iso-codes py-kmodes randfold
ispc py-knack random123
istio py-kombu randrproto
itensor py-kornia range-v3
itk py-kosh rankstr
itstool py-kubernetes rapidjson
itsx py-labours raptor2
iwyu py-lap rasdaemon
jackcess py-lark-parser rasqal
jafka py-laspy ratel
jags py-latexcodec ravel
jali py-law raxml
jansi py-lazy raxml-ng
jansi-native py-lazy-object-proxy ray
jansson py-lazy-property rccl
jasper py-lazyarray rclone
jbigkit py-leather rdc
jblob py-lerc rdkit
jchronoss py-lhsmdu rdma-core
jdk py-liac-arff rdp-classifier
jellyfish py-libclang rdptools
jemalloc py-libconf re2
jetty-project py-libensemble re2c
jhpcn-df py-liblas readfq
jimtcl py-librosa readline
jline3 py-lifelines recola
jmol py-lightgbm recola-sm
jogl py-ligo-segments recon
jose py-line-profiler recorder
jpegoptim py-linecache2 recordproto
jq py-lineenhancer redis
json-c py-lit reditools
json-cwx py-lizard redland
json-fortran py-llnl-sina redland-bindings
json-glib py-llvmlite redset
jsoncpp py-lmdb redundans
jsonnet py-lmfit reframe
jstorm py-lmodule regcm
jube py-localcider relax
judy py-locket relion
julea py-lockfile remhos
julia py-logilab-common rempi
junit4 py-louie rename
k8 py-lru-dict rendercheck
kadath py-lscsoft-glue renderproto
kafka py-luigi repeatmasker
kahip py-lws repeatmodeler
kaiju py-lxml repeatscout
kakoune py-lz4 reprimand
kaks-calculator py-lzstring resourceproto
kaldi py-m2r restic
kallisto py-macholib revbayes
karma py-machotools revocap-coupler
kassiopeia py-macs2 revocap-refiner
kbd py-maestrowf rgb
kbproto py-magic rhash
kcov py-mailchecker rinetd
kdiff3 py-make ripgrep
kea py-mako rivet
kealib py-mapclassify rkt-base
keepalived py-markdown rkt-cext-lib
keepassxc py-markdown-it-py rkt-compiler-lib
kentutils py-markdown2 rkt-dynext-lib
keyutils py-markovify rkt-rackunit-lib
kibana py-markupsafe rkt-scheme-lib
kicad py-marshmallow rkt-testing-util-lib
kim-api py-matplotlib rkt-zo-lib
kinesis py-matplotlib-inline rlwrap
kineto py-mayavi rmats
kitty py-mccabe rmgdft
kmergenie py-mdanalysis rmlab
kmod py-mdit-py-plugins rna-seqc
knem py-mechanize rnaquast
kokkos py-meldmd rnaz
kokkos-kernels py-memory-profiler rng-tools
kokkos-kernels-legacy py-memprof rngstreams
kokkos-legacy py-mercantile rnpletal
kokkos-nvcc-wrapper py-merlin rocalution
kraken py-meshio rocblas
kraken2 py-metasv rocfft
krb5 py-methylcode rocketmq
krims py-metpy rocksdb
kripke py-mffpy rockstar
kubernetes py-mg-rast-tools rocm-bandwidth-test
kvasir-mpl py-mido rocm-clang-ocl
kvtree py-mikado rocm-cmake
kylin py-minio rocm-dbgapi
ladot py-minrpc rocm-debug-agent
laghos py-misopy rocm-device-libs
lame py-mistune rocm-gdb
lammps py-mixedhtseq rocm-opencl
landsfcutil py-mizani rocm-openmp-extras
lanl-cmake-modules py-ml-collections rocm-smi
lapackpp py-mlperf-logging rocm-smi-lib
last py-mlxtend rocm-tensile
lastz py-mmcv rocm-validation-suite
laszip py-mmtf-python rocminfo
latex2html py-mne rocprim
latte py-mo-pack rocprofiler-dev
launchmon py-mock rocrand
lazyten py-modred rocsolver
lbann py-moltemplate rocsparse
lbxproxy py-monotonic rocthrust
lbzip2 py-monty roctracer-dev
lcals py-more-itertools roctracer-dev-api
lcgenv py-motmetrics rodinia
lcio py-motor roms
lcms py-mouseinfo root
lcov py-moviepy rose
ldak py-mpi4py ross
ldc py-mpld3 routino
ldc-bootstrap py-mplhep rpcsvc-proto
legion py-mplhep-data rpm
lemon py-mpmath rr
leptonica py-mrcfile rrdtool
lerc py-msal rsbench
less py-msal-extensions rsem
lesstif py-msgpack rstart
leveldb py-msgpack-numpy rstudio
lftp py-msrest rsync
lhapdf py-msrestazure rsyslog
lhapdf5 py-multi-key-dict rt-tests
lhapdfsets py-multidict rtags
libabigail py-multipledispatch rtax
libaec py-multiprocess ruby
libaio py-multiqc ruby-asciidoctor
libao py-munch ruby-erubis
libapplewm py-murmurhash ruby-gnuplot
libapreq2 py-mutagen ruby-hpricot
libarchive py-mx ruby-mustache
libasr py-mxfold2 ruby-narray
libassuan py-myhdl ruby-rake
libatasmart py-mypy ruby-rdiscount
libatomic-ops py-mypy-extensions ruby-ronn
libbacktrace py-mysql-connector-python ruby-rubyinline
libbeagle py-mysqlclient ruby-svn2git
libbeato py-mysqldb1 ruby-terminal-table
libbinio py-nanotime ruby-thor
libblastrampoline py-nara-wpe ruby-tmuxinator
libbsd py-natsort ruby-unicode-display-width
libbson py-nbclassic ruby-xdg
libbytesize py-nbclient ruby-zentest
libc py-nbconvert runc
libcanberra py-nbdime rust
libcap py-nbformat rust-bindgen
libcap-ng py-nbmake sabre
libcatalyst py-nbsphinx saga-gis
libceed py-nc-time-axis sailfish
libcerf py-ndg-httpsclient salmon
libcgroup py-neo salmon-tddft
libcint py-neobolt salome-configuration
libcircle py-neotime salome-med
libconfig py-neovim-remote salome-medcoupling
libconfuse py-nest-asyncio sambamba
libcroco py-nestle samblaster
libctl py-netaddr samrai
libcudf py-netcdf4 samtools
libcuml py-netifaces sandbox
libcumlprims py-netket sarus
libcxxwrap-julia py-networkit satsuma2
libcyaml py-networkx savanna
libdaemon py-neurokit2 saws
libdap4 py-neurolab sblim-sfcc
libdatrie py-neurora sbml
libdc1394 py-nibabel sbp
libdeflate py-nibetaseries sbt
libdivsufsort py-nilearn scala
libdmx py-ninja scalasca
libdrm py-nipype scale
libdwarf py-nistats scallop
libeatmydata py-nitransforms scalpel
libecpint py-niworkflows scan-for-matches
libedit py-nltk scantailor
libefence py-nodeenv scipoptsuite
libelf py-nose scitokens-cpp
libemos py-nose-cov scons
libepoxy py-nose2 scorec-core
libestr py-nosexcover scorep
libev py-notebook scorpio
libevdev py-npx scotch
libevent py-ntlm-auth scr
libevpath py-ntplib screen
libexif py-num2words scripts
libfabric py-numba scrnsaverproto
libfastcommon py-numcodecs scrot
libfastjson py-numexpr scs
libffi py-numexpr3 sctk
libffs py-numpy sdl2
libfive py-numpydoc sdl2-image
libflame py-nvidia-ml-py sdsl-lite
libfms py-nvidia-ml-py3 seacas
libfontenc py-oauth2client seal
libfs py-oauthlib sed
libfuse py-odc-geo sensei
libfyaml py-olefile sentencepiece
libgain py-omegaconf sentieon-genomics
libgcrypt py-onnx seqan
libgd py-onnx-runtime seqkit
libgeotiff py-onnxconverter-common seqprep
libgff py-onnxmltools seqtk
libgit2 py-ont-fast5-api serf
libgpg-error py-opcodes serialbox
libgpuarray py-opencensus sessreg
libgridxc py-opencensus-context setserial
libgssglue py-openidc-client setxkbmap
libgtextutils py-openmc sfcgal
libharu py-openpmd-validator sfcio
libhbaapi py-openpmd-viewer sga
libhio py-openpyxl sgpp
libhugetlbfs py-openslide-python shadow
libiberty py-opentuner shapeit
libibumad py-opppy shapeit4
libical py-opt-einsum shapelib
libice py-or-tools shared-mime-info
libiconv py-ordered-set shark
libid3tag py-ordereddict shc
libidl py-os-service-types shengbte
libidn2 py-oset sherpa
libimagequant py-oslo-config shiny-server
libimobiledevice py-oslo-i18n shiro
libinih py-oslo-serialization shocklibs
libint py-oslo-utils shoremap
libisal py-osqp shortbred
libiscsi py-overpy shortstack
libjpeg py-owslib showfont
libjpeg-turbo py-pacifica-downloader shtools
libjson py-pacifica-namespace shuffile
libjwt py-pacifica-uploader sickle
libkcapi py-packaging sicm
libkml py-pager siesta
libksba py-palettable sigcpp
liblas py-pamela sigio
liblbfgs py-pandas signalp
liblbxutil py-pandocfilters signify
liblockfile py-param silo
liblognorm py-parameterized simde
liblouis py-paramiko simgrid
libluv py-paramz simmetrix-simmodsuite
liblzf py-parmed simplemoc
libmacaroons py-parse simsipm
libmad py-parsedatetime simul
libmatheval py-parsimonious simulationio
libmaus2 py-parsl sina
libmaxminddb py-parso singularity
libmbim py-partd singularity-legacy
libmcrypt py-particle singularityce
libmd py-pastel sio
libmesh py-path-py sionlib
libmetalink py-pathlib sirius
libmicrodns py-pathlib2 skilion-onedrive
libmicrohttpd py-pathos skopeo
libmmtf-cpp py-pathspec sl
libmng py-pathtools slang
libmnl py-patool slate
libmo-unpack py-patsy sleef
libmodbus py-pauvre slepc
libmonitor py-pbr slf4j
libmpdclient py-peachpy slider
libnbc py-pem slirp4netns
libndp py-pep517 sloccount
libnet py-pep8 slurm
libnetfilter-conntrack py-pep8-naming slurm-drmaa
libnetfilter-cthelper py-performance smalt
libnetfilter-cttimeout py-periodictable smartdenovo
libnetfilter-queue py-petastorm smartmontools
libnetworkit py-petsc4py smof
libnfnetlink py-pexpect smproxy
libnfs py-phonenumbers snakemake
libnfsidmap py-phonopy snap
libnftnl py-pickle5 snap-berkeley
libnids py-pickleshare snap-korf
libnl py-picmistandard snappy
libnotify py-picrust snbone
libnova py-picrust2 sniffles
libnrm py-pid snpeff
libnsl py-pika snphylo
libogg py-pil snptest
liboldx py-pillow soapdenovo-trans
libopts py-pillow-simd soapdenovo2
libp11 py-pint soci
libpam py-pip sofa-c
libpaper py-pipits sollve
libpcap py-pispino sollya
libpciaccess py-pkgconfig solr
libpeas py-pkginfo somatic-sniper
libpfm4 py-plac sombrero
libpipeline py-planar sonlib
libplist py-planet sortmerna
libpmemobj-cpp py-platformdirs sos
libpng py-plotly sosflow
libproxy py-plotnine source-highlight
libpsl py-pluggy sowing
libpsml py-ply sox
libpthread-stubs py-pmw sp
libpulsar py-pmw-patched spack
libqglviewer py-pockets spades
libqrencode py-poetry span-lite
libquo py-poetry-core spark
libraw1394 py-pomegranate sparrow
librdkafka py-pooch sparse
librelp py-portalocker sparsehash
libristra py-portend sparskit
librmm py-poster sparta
librom py-pot spath
librsb py-pox spdlog
librsvg py-poyo specfem3d-globe
librtlsdr py-ppft spectra
librttopo py-pre-commit spectre
libsakura py-preshed spectrum-mpi
libsamplerate py-pretrainedmodels speex
libseccomp py-prettytable speexdsp
libsecret py-priority spfft
libsharp py-profilehooks spglib
libshm py-proglog sph2pipe
libsigcpp py-progress spherepack
libsignal-protocol-c py-progressbar2 spindle
libsigsegv py-projectq spiner
libslirp py-prometheus-client spiral-package-fftx
libsm py-promise spiral-package-hcol
libsndfile py-prompt-toolkit spiral-package-mpi
libsodium py-protobuf spiral-package-simt
libspatialindex py-prov spiral-software
libspatialite py-prwlock spla
libspiro py-pspamm spm
libsplash py-psutil spot
libssh py-psyclone sprng
libssh2 py-psycopg2 sqlcipher
libsvm py-ptyprocess sqlite
libszip py-pudb sqlite-jdbc
libtar py-pulp sqlitebrowser
libtasn1 py-pure-eval sqoop
libtermkey py-pure-sasl squashfs
libthai py-py squashfuse
libtheora py-py-cpuinfo squid
libtiff py-py-spy sratoolkit
libtirpc py-py2bit srilm
libtlx py-py2cairo sse2neon
libtomlc99 py-py2neo sshfs
libtommath py-py4j sshpass
libtool py-py6s ssht
libtorrent py-pyaestro ssmtp
libtree py-pyamg sspace-longread
libuecc py-pyaml sspace-standard
libunistring py-pyani sst-core
libunwind py-pyarrow sst-dumpi
libusb py-pyasn1 sst-elements
libusbmuxd py-pyasn1-modules sst-macro
libuser py-pyautogui sst-transports
libuuid py-pybedtools stacks
libuv py-pybids staden-io-lib
libvdwxc py-pybigwig star
libverto py-pybind11 star-ccm-plus
libvips py-pybind11-stubgen starlight
libvorbis py-pybobyqa starpu
libvori py-pybrain startup-notification
libvpx py-pybtex stat
libvterm py-pybtex-docutils stata
libwebp py-pycairo static-analysis-suite
libwebsockets py-pycares stc
libwhich py-pycbc steps
libwindowswm py-pychecker stinger
libx11 py-pycifrw storm
libxau py-pycmd stow
libxaw py-pycocotools strace
libxaw3d py-pycodestyle stream
libxc py-pycompadre strelka
libxcb py-pycortex stress
libxcomposite py-pycosat stress-ng
libxcrypt py-pycparser string-view-lite
libxcursor py-pycrypto stringtie
libxdamage py-pycuda stripack
libxdmcp py-pycurl structure
libxevie py-pydantic strumpack
libxext py-pydap su2
libxfixes py-pydatalog sublime-text
libxfont py-pydeprecate subread
libxfont2 py-pydeps subversion
libxfontcache py-pydicom suite-sparse
libxft py-pydispatcher sumaclust
libxi py-pydmd sumo
libxinerama py-pydocstyle sundials
libxkbcommon py-pydoe suntans
libxkbfile py-pydoe2 superchic
libxkbui py-pydot superlu
libxml2 py-pydot2 superlu-dist
libxmu py-pydotplus superlu-mt
libxp py-pydv supernova
libxpm py-pyeda survey
libxpresent py-pyelftools sw4lite
libxprintapputil py-pyem swan
libxprintutil py-pyepsg swap-assembler
libxrandr py-pyface swarm
libxrender py-pyfaidx swfft
libxres py-pyfasta swftools
libxscrnsaver py-pyfftw swiftsim
libxshmfence py-pyfiglet swig
libxslt py-pyfits swipl
libxsmm py-pyflakes symengine
libxstream py-pyfr symlinks
libxt py-pygdal sympol
libxtrap py-pygdbmi sys-sage
libxtst py-pygelf sysbench
libxv py-pygeos syscalc
libxvmc py-pygetwindow sysfsutils
libxxf86dga py-pygit2 sysget
libxxf86misc py-pygithub sysstat
libxxf86vm py-pyglet systemc
libyaml py-pygments systemtap
libyogrt py-pygments-pytest sz
libzip py-pygobject tabix
libzmq py-pygps tajo
liggghts py-pygpu talass
lighttpd py-pygraphviz talloc
ligra py-pygresql tamaas
likwid py-pygtk tangram
linkphase3 py-pygtrie tantan
linktest py-pyh5md tar
linsys-v py-pyheadtail targetp
linux-headers py-pyinstrument task
linux-pam py-pyinstrument-cext taskd
lis py-pyjnius taskflow
listres py-pyjwt tasmanian
lizard py-pyke tassel
lksctp-tools py-pykml tau
llvm py-pykokkos-base tauola
llvm-amdgpu py-pykwalify tbl2asn
llvm-doe py-pylev tcl
llvm-openmp py-pyliblzma tcl-itcl
llvm-openmp-ompt py-pylikwid tcl-tcllib
lm-sensors py-pylint tcl-tclxml
lmbench py-pylops tclap
lmdb py-pymatgen tcoffee
lmod py-pymc3 tcpdump
lndir py-pymeeus tcptrace
log4c py-pyminifier tcsh
log4cplus py-pymol tdengine
log4cpp py-pymongo tealeaf
log4cxx py-pymoo teckit
logrotate py-pymorph tecplot
logstash py-pympler telegraf
loki py-pymsgbox tempestremap
looptools py-pymumps templight
lordec py-pymysql templight-tools
lorene py-pynacl tengine
lp-solve py-pynio tensorflow-serving-client
lrslib py-pynisher tensorpipe
lrzip py-pynn termcap
lsf py-pynvim tesseract
lshw py-pynvml testdfsio
lsof py-pyodbc testu01
lsscsi py-pyomo tetgen
ltp py-pyopencl tethex
ltr-retriever py-pyopenssl texinfo
ltrace py-pypar texlive
lua py-pyparsing texstudio
lua-bit32 py-pypeflow textparser
lua-bitlib py-pypeg2 tfel
lua-ffi py-pyperclip the-platinum-searcher
lua-lpeg py-pyperf the-silver-searcher
lua-luafilesystem py-pypinyin thepeg
lua-luajit py-pyprecice thornado-mini
lua-luajit-openresty py-pyprof2html thrift
lua-luaposix py-pyproj thrust
lua-mpack py-pypulse tidy-html5
lua-sol2 py-pyqi tig
lucene py-pyqt-builder time
luit py-pyqt4 timedatex
lulesh py-pyqt5 timemory
lumpy-sv py-pyqt5-sip tini
lustre py-pyquaternion tinker
lvarray py-pyrad tinygltf
lvm2 py-pyrect tinyobjloader
lwgrp py-pyrfr tinyxml
lwm2 py-pyro4 tinyxml2
lwtnn py-pyrosar tioga
lxc py-pyrsistent tippecanoe
lynx py-pysam tiptop
lz4 py-pyscaf tix
lzma py-pyscf tixi
lzo py-pyscipopt tk
lzop py-pyscreeze tkrzw
m4 py-pyserial tldd
macfuse py-pyshp tmalign
macsio py-pyside tmhmm
mad-numdiff py-pyside2 tmux
madgraph5amc py-pysimdjson tomcat
madx py-pysmartdl toml11
mafft py-pysocks tophat
magics py-pysolar torque
magma py-pyspark totalview
mahout py-pyspellchecker tpm2-tss
makedepend py-pysqlite tppred
maker py-pysqlite3 tracer
mallocmc py-pystac tracy
maloc py-pystan tracy-client
man-db py-pysurfer tramonto
manta py-pytailf transabyss
mapnik py-pytaridx transdecoder
mapserver py-pytecplot transposome
mapsplice2 py-pytest transrate
maq py-pytest-arraydiff transset
margo py-pytest-benchmark trapproto
mariadb py-pytest-cache tree
mariadb-c-client py-pytest-check-links tree-sitter
mark py-pytest-cov treelite
masa py-pytest-cpp treesub
mash py-pytest-doctestplus trf
masurca py-pytest-flake8 triangle
mathematica py-pytest-flakes trident
matio py-pytest-forked trilinos
matlab py-pytest-html trilinos-catalyst-ioss-adapter
maven py-pytest-httpbin trimal
maverick py-pytest-isort trimgalore
mawk py-pytest-metadata trimmomatic
mbdyn py-pytest-mock trinity
mbedtls py-pytest-mypy trinotate
mc py-pytest-openfiles trnascan-se
mcl py-pytest-parallel truchas
mcpp py-pytest-pep8 tskit
mcutils py-pytest-qt tulip
mdsplus py-pytest-random-order turbine
mdtest py-pytest-runner turbomole
med py-pytest-timeout turnserver
meep py-pytest-xdist tut
mefit py-python-benedict twm
megadock py-python-box tycho2
megahit py-python-certifi-win32 typhon
melissa py-python-constraint typhonio
memaxes py-python-crfsuite uchardet
memcached py-python-daemon ucx
meme py-python-dateutil udunits
memkind py-python-docs-theme ufo-core
memsurfer py-python-dotenv ufo-filters
memtester py-python-editor ufs-utils
meraculous py-python-engineio ufs-weather-model
mercurial py-python-fmask uftrace
mercury py-python-fsutil umap
mesa py-python-gitlab umesimd
mesa-demos py-python-igraph umoci
mesa-glu py-python-jenkins umpire
mesa18 py-python-json-logger unblur
meshkit py-python-keystoneclient uncrustify
meshtool py-python-ldap unibilium
meson py-python-levenshtein unifdef
mesquite py-python-logstash unifyfs
metabat py-python-louvain unigen
metall py-python-lzo unison
metaphysicl py-python-magic units
metis py-python-mapnik unittest-cpp
metkit py-python-meep universal-ctags
mfem py-python-memcached unixodbc
mg py-python-oauth2 unqlite
mgis py-python-picard unrar
microbiomeutil py-python-rapidjson unuran
microsocks py-python-slugify unzip
migraphx py-python-socketio upcxx
migrate py-python-subunit upp
mii py-python-swiftclient uqtk
millepede py-python-utils uriparser
mimalloc py-python-xlib usbutils
minc-toolkit py-python-xmp-toolkit usearch
minced py-python3-xlib userspace-rcu
mindthegap py-pythonqwt utf8cpp
miniaero py-pythonsollya utf8proc
miniamr py-pythran util-linux
miniapp-ascent py-pytimeparse util-linux-uuid
miniasm py-pytoml util-macros
miniconda2 py-pytools uvw
miniconda3 py-pytorch-gradual-warmup-lr vacuumms
minife py-pytorch-lightning valgrind
miniforge3 py-pytorch-sphinx-theme vampirtrace
minigan py-pyts vapor
minighost py-pytweening vardictjava
minigmg py-pytz variorum
minimap2 py-pyudev varnish-cache
minimd py-pyugrid varscan
minio py-pyupgrade vasp
miniqmc py-pyusb vbfnlo
minisign py-pyutilib vc
minismac2d py-pyvcf vcftools
minitri py-pyvista vcsh
minivite py-pyvistaqt vdt
minixyce py-pywavelets veccore
minizip py-pywcs vecgeom
minuit py-pyworld veclibfort
miopen-hip py-pyyaml vecmem
miopen-opencl py-pyzmq vectorclass-version2
miopen-tensile py-qiskit-aer vegas2
miopengemm py-qiskit-terra veloc
mira py-qmtest velvet
miranda py-qpth velvetoptimiser
mirdeep2 py-qrcode verilator
mitofates py-qsymm verrou
mitos py-qtawesome vesta
mivisionx py-qtconsole vgm
mixcr py-qtpy videoproto
mkfontdir py-quantities viennarna
mkfontscale py-quart viewres
mlhka py-quast vifi
mlirmiopen py-quaternionic vigra
mlocate py-queryablelist vim
mlperf-deepcam py-questionary virtest
mmg py-radiant-mlhub virtualgl
mmv py-radical-entk virtuoso
moab py-radical-gtod visit
mochi-margo py-radical-pilot visit-cgns
mochi-thallium py-radical-saga visit-ffp
model-traits py-radical-utils visit-mfem
modeltest-ng py-ranger-fm visit-silo
modern-wheel py-rapidfuzz visit-unv
modylas py-rarfile vite
mofem-cephas py-rasterio vizglow
mofem-fracture-module py-ratelim vmatch
mofem-minimal-surface-equation py-ratelimiter vmc
mofem-users-modules py-raven vmd
mokutil py-ray volk
molcas py-rbtools voropp
molden py-rdflib votca
mongo-c-driver py-rdt votca-csg
mongo-cxx-driver py-readme-renderer votca-csg-tutorials
mongodb-async-driver py-recommonmark votca-csgapps
mono py-redis votca-ctp
montage py-regex votca-tools
moosefs py-reindent votca-xtp
moreutils py-reportlab vpfft
mosh py-repoze-lru vpic
mosquitto py-reproject vsearch
mothur py-requests vsftpd
motif py-requests-ftp vt
motioncor2 py-requests-futures vtable-dumper
mount-point-attributes py-requests-mock vtk
mozjs py-requests-ntlm vtk-h
mpark-variant py-requests-oauthlib vtk-m
mpas-model py-requests-toolbelt vvtest
mpc py-requests-unixsocket w3emc
mpdecimal py-resampy w3m
mpe2 py-responses w3nco
mpest py-restview wannier90
mpfi py-resultsfile warpx
mpfr py-retry watch
mpi-bash py-retry-decorator wayland
mpibind py-retrying wayland-protocols
mpich py-retworkx wcs
mpifileutils py-rfc3986 wcslib
mpilander py-rich webbench
mpileaks py-rios weechat
mpip py-rioxarray weighttp
mpir py-rise wget
mpitrampoline py-rmm wgrib2
mpiwrapper py-rnacocktail wgsim
mpix-launch-swift py-rnc2rng which
mpl py-robotframework whizard
mpt py-rope wi4mpi
mptensor py-rosdep windowswmproto
mrbayes py-rosdistro wiredtiger
mrbench py-rosinstall wireshark
mrchem py-rosinstall-generator wonton
mrcpp py-rospkg wordnet
mrnet py-rply workrave
mrtrix3 py-rpy2 wps
mscgen py-rq wrf
msgpack-c py-rsa wrf-io
mshadow py-rsatoolbox wrk
msmc py-rseqc wsmancli
msmc2 py-rst2pdf wt
mstk py-rtree wtdbg2
mt-metis py-ruamel-ordereddict wxparaver
mujoco py-ruamel-yaml wxpropgrid
multitail py-ruamel-yaml-clib wxwidgets
multitime py-rx x11perf
multiverso py-s3cmd x264
mumax py-s3fs xabclib
mummer py-s3transfer xapian-core
mummer4 py-sacremoses xauth
mumps py-saga-python xbacklight
munge py-salib xbiff
muparser py-sanic xbitmaps
muparserx py-scandir xbraid
muscle py-schema xcalc
muse py-scientificpython xcb-demo
music py-scikit-build xcb-proto
musl py-scikit-fmm xcb-util
muster py-scikit-fuzzy xcb-util-cursor
mutationpp py-scikit-image xcb-util-errors
mvapich2 py-scikit-learn xcb-util-image
mvapich2-gdr py-scikit-learn-extra xcb-util-keysyms
mvapich2x py-scikit-optimize xcb-util-renderutil
mxm py-scinum xcb-util-wm
mxml py-scipy xcb-util-xrm
mxnet py-scooby xcfun
mysql py-scoop xclip
mysqlpp py-scp xclipboard
n2p2 py-scs xclock
nacos py-sdmetrics xcmiscproto
nag py-sdv xcmsdb
nalu py-seaborn xcompmgr
nalu-wind py-secretstorage xconsole
namd py-segmentation-models-pytorch xcursor-themes
nano py-selectors34 xcursorgen
nanoflann py-selenium xdbedizzy
nanomsg py-semantic-version xdelta
nanopb py-semver xditview
nasm py-send2trash xdm
nauty py-sentencepiece xdmf3
nbdkit py-sentry-sdk xdotool
ncbi-magicblast py-seqeval xdpyinfo
ncbi-rmblastn py-seriate xdriinfo
ncbi-toolkit py-serpent xedit
nccl py-setproctitle xerces-c
nccl-tests py-setupmeta xeus
nccmp py-setuptools xev
ncdu py-setuptools-cpp xextproto
ncftp py-setuptools-git xeyes
ncio py-setuptools-rust xf86bigfontproto
ncl py-setuptools-scm xf86dga
nco py-setuptools-scm-git-archive xf86dgaproto
ncompress py-sfepy xf86driproto
ncurses py-sgp4 xf86miscproto
ncview py-sh xf86rushproto
ndiff py-shapely xf86vidmodeproto
neartree py-shellingham xfd
nek5000 py-shiboken xfindproxy
nekbone py-shiboken2 xfontsel
nekcem py-shortuuid xforms
neko py-shroud xfs
nekrs py-shtab xfsdump
nektar py-sierrapy xfsinfo
nektools py-simplegeneric xfsprogs
nemsio py-simplejson xfwp
nemsiogfs py-simplekml xgamma
neo4j py-singledispatch xgboost
neovim py-sip xgc
nest py-six xhmm
net-snmp py-skl2onnx xhost
netcdf-c py-slepc4py xineramaproto
netcdf-cxx py-slurm-pipeline xinit
netcdf-cxx4 py-smac xinput
netcdf-fortran py-smart-open xios
netdata py-smartypants xkbcomp
netgauge py-smmap xkbdata
netgen py-snappy xkbevd
netkit-ftp py-sncosmo xkbprint
netlib-lapack py-sniffio xkbutils
netlib-scalapack py-snowballstemmer xkeyboard-config
netlib-xblas py-snuggs xkill
netpbm py-sobol-seq xlc
netperf py-sonlib xlf
nettle py-sortedcollections xload
neuron py-sortedcontainers xlogo
newt py-soundfile xlsatoms
nextflow py-soupsieve xlsclients
nfft py-spacy xlsfonts
nfs-ganesha py-spacy-models-en-core-web-sm xmag
nfs-utils py-spacy-models-en-vectors-web-lg xman
nghttp2 py-sparse xmessage
nginx py-spatialist xmh
ngmerge py-spatialite xmlf90
ngmlr py-spdlog xmlrpc-c
ngspice py-spectra xmlto
nicstat py-spectral xmodmap
nim py-speech-recognition xmore
ninja py-spefile xnnpack
ninja-fortran py-spgl1 xorg-cf-files
nix py-spglib xorg-docs
njet py-spherical xorg-gtest
nlcglib py-sphinx xorg-server
nlohmann-json py-sphinx-argparse xorg-sgml-doctools
nlohmann-json-schema-validator py-sphinx-autodoc-typehints xphelloworld
nlopt py-sphinx-bootstrap-theme xplor-nih
nmap py-sphinx-copybutton xplsprinters
nn-c py-sphinx-gallery xpmem
nnpack py-sphinx-multiversion xpr
nnvm py-sphinx-rtd-theme xprehashprinterlist
node-js py-sphinx-tabs xprop
notmuch py-sphinxautomodapi xproperty
npb py-sphinxcontrib-applehelp xproto
npm py-sphinxcontrib-bibtex xproxymanagementprotocol
npth py-sphinxcontrib-devhelp xqilla
nrm py-sphinxcontrib-htmlhelp xrandr
ns-3-dev py-sphinxcontrib-issuetracker xrdb
nseg py-sphinxcontrib-jsmath xrefresh
nsimd py-sphinxcontrib-mermaid xrootd
nspr py-sphinxcontrib-napoleon xrx
nss py-sphinxcontrib-programoutput xsbench
ntirpc py-sphinxcontrib-qthelp xscope
ntl py-sphinxcontrib-serializinghtml xsd
ntpoly py-sphinxcontrib-trio xsdk
numactl py-sphinxcontrib-websupport xsdk-examples
numamma py-sphobjinv xset
numap py-spyder xsetmode
numdiff py-spykeutils xsetpointer
nut py-sqlalchemy xsetroot
nvdimmsim py-sqlalchemy-stubs xsimd
nvhpc py-sqlalchemy-utils xsm
nvptx-tools py-sqlparse xstdcmap
nvshmem py-srsly xtensor
nvtop py-sshtunnel xtensor-python
nwchem py-stack-data xterm
nyancat py-statsmodels xtl
ocaml py-stdlib-list xtrans
ocamlbuild py-stestr xtrap
occa py-stevedore xts
oce py-stomp-py xvidtune
oci-systemd-hook py-stopit xvinfo
ocl-icd py-storm xwd
oclgrind py-stratify xwidgets
oclint py-stsci-distutils xwininfo
oclock py-submitit xwud
octa py-subprocess32 xxd-standalone
octave py-subrosa xxhash
octave-arduino py-svgpathtools xyce
octave-control py-svgutils xz
octave-gsl py-svgwrite yajl
octave-instrctl py-symengine yaksa
octave-io py-symfit yambo
octave-optim py-sympy yaml-cpp
octave-quaternion py-syned yara
octave-signal py-systemd-python yarn
octave-splines py-tables yasm
octave-statistics py-tabulate ycsb
octave-struct py-tap-py yoda
octave-symbolic py-tatsu yorick
octopus py-tblib z-checker
odc py-templateflow z3
of-catalyst py-tempora zabbix
of-precice py-tenacity zfp
omega-h py-tensorboard zfs
ompss py-tensorboard-data-server zig
ompt-openmp py-tensorboard-plugin-wit zip
oneapi-level-zero py-tensorboardx zipkin
onednn py-tensorflow zlib
oniguruma py-tensorflow-datasets zlib-ng
onnx py-tensorflow-estimator zoltan
ont-albacore py-tensorflow-hub zookeeper
oommf py-tensorflow-metadata zookeeper-benchmark
op2-dsl py-tensorflow-probability zpares
opa-psm2 py-termcolor zsh
opam py-terminado zstd
opari2 py-terminaltables zstr
open-iscsi py-tern zziplib
open-isns py-testfixtures None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abacus

Homepage:
Spack package:
Versions:
develop, 2.2.1, 2.2.0
Build Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Link Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Run Dependencies:
mpi
Description:
ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.6.1, 9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20211102.0, 20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Build Dependencies:
gnuconfig
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 19.0.0, 18.0.0, 17.1.0, 17.0.0, 16.0.0, 15.1.0, 15.0.1, 15.0.0, 14.1.0, 14.0.0, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, autodiff, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnx-runtime, py-pybind11, py-pytest, root
Link Dependencies:
cuda, autodiff, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnx-runtime, py-pybind11, py-pytest, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.1, 0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.8.0, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cuda, cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
cuda, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
gnuconfig, bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
gnuconfig, automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gnuconfig, gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Build Dependencies:
gnuconfig
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agile

Homepage:
Spack package:
Versions:
1.5.1
Build Dependencies:
gnuconfig, hepmc, boost
Link Dependencies:
hepmc, boost
Description:
AGILe is A Generator Interface Library (& executable), i.e. a uniform object oriented C++ interface for a variety of Fortran-based Monte Carlo event generators..

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
gnuconfig
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.7.2, 2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, boost
Link Dependencies:
cuda, cmake, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alpgen

Homepage:
Spack package:
Versions:
2.1.4
Build Dependencies:
cmake
Description:
A collection of codes for the generation of multi-parton processes in hadronic collisions.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, 1.0.9, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Build Dependencies:
gnuconfig
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0-lbann, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, parallel-netcdf, tcsh, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, parallel-netcdf, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amdblis

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, blas, python
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
gnuconfig, numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, hypre, masa, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, hypre, masa, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 22.05, 22.04, 22.03, 22.02, 22.01, 21.12, 21.11, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand, rocprim
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.14, 0.10
Build Dependencies:
gnuconfig, pkgconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.935, 0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
gnuconfig, python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
20220205, 2.3.5, 2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
3.2.0, 3.1.0, 3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : https://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, gl, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
gl, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.4, 0.0.3, 0.0.2, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
3.0.2, 2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, zlib, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Link Dependencies:
zlib, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
gnuconfig, swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apktool

Homepage:
Spack package:
Versions:
2.6.1, 2.6.0
Build Dependencies:
java
Run Dependencies:
java
Description:
A tool for reverse engineering 3rd party, closed, binary Android apps.

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apptainer

Homepage:
Spack package:
Versions:
main, 1.0.2
Build Dependencies:
pkgconfig, go, uuid, libgpg-error, libseccomp, git, cryptsetup
Link Dependencies:
go, uuid, libgpg-error, libseccomp, git
Run Dependencies:
squashfs, shadow, cryptsetup
Description:
Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. Needs post-install chmod/chown steps to enable full functionality. See package definition or `spack-build- out.txt` build log for details, e.g.:: tail -15 $(spack location -i apptainer)/.spack/spack-build-out.txt

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Build Dependencies:
gnuconfig
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.6, 0.5.2, 0.5
Build Dependencies:
cuda, cmake, fmt, nlohmann-json, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, fmt, nlohmann-json, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy, py-pybind11
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.2, 1.1, 1.0, 0.9-beta
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, rocthrust, kokkos, trilinos
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, rocthrust, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Build Dependencies:
gnuconfig
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Build Dependencies:
gnuconfig
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.36.0, 1.35.0, 1.34.0
Build Dependencies:
gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
22.0.1
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
22.0.1, 22.0, 21.1.3, 21.1.2, 21.1.1, 21.1, 21.0.3, 21.0.2, 21.0.1, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

armpl

Homepage:
Spack package:
Versions:
22.0.1_gcc-11.2, 22.0.1_gcc-10.2, 22.0.1_gcc-9.3, 22.0.1_gcc-8.2, 22.0.1_gcc-7.5
Description:
Arm Performance Libraries provides optimized standard core math libraries for high-performance computing applications on Arm processors.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.8.1, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
8.0.0, 7.0.0, 4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python, autoconf, automake, libtool
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
Build Dependencies:
gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.21.0, 1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2, 1.18.1, 1.18.0, 1.17.0, 1.16.1, 1.16.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Build Dependencies:
gnuconfig
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.2.3, 5.2.2, 5.2.1, 5.1.4, 5.1.3, 5.0.1, 4.0.1
Build Dependencies:
cmake, pkgconfig, zlib
Link Dependencies:
zlib
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.7.1, 5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
5.1.0, 5.0.2, 5.0.0, 4.5.2, 4.5.0, 4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, rsync
Link Dependencies:
rsync, comgr, hsa-rocr-dev, elf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.2.0.0, 4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
gnuconfig, lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Build Dependencies:
gnuconfig
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59
Build Dependencies:
gnuconfig, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2022.02.11, 2019.01.06
Build Dependencies:
gnuconfig
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodiff

Homepage:
Spack package:
Versions:
0.6.4, 0.5.13
Build Dependencies:
cmake, eigen, py-pybind11
Link Dependencies:
eigen
Run Dependencies:
py-pybind11
Description:
autodiff is automatic differentiation made easier for C++.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
gnuconfig, pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.5, 1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
gnuconfig, autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.7, 2.11.6, 2.11.5, 2.11.4, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-pip, py-wheel, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.17.10, 2.16.1
Build Dependencies:
gnuconfig, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree, zlib
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, lua, scr, kvtree, dtcmp, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, lua, scr, kvtree, dtcmp, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.1.0, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
gnuconfig, glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

bacio

Homepage:
Spack package:
Versions:
2.5.0, 2.4.1
Build Dependencies:
cmake
Description:
The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.2, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake, jsoncpp
Link Dependencies:
zlib, jsoncpp
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.15, 1.0.13
Build Dependencies:
zlib, git
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gnuconfig, gmp, ntl, llvm, libyaml
Link Dependencies:
gmp, ntl, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.4, 4.3
Build Dependencies:
gnuconfig, ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
gnuconfig, automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batchedblas

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
blas
Link Dependencies:
blas
Description:
Batched BLAS is one of the new approaches for a task-based BLAS invocation, and it is defined as a new interface that allows users to execute multiple independent BLAS operations as a single subroutine call

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

baurmc

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig
Description:
Baur's Monte Carlo package for simulating W+ gamma production at hadron colliders provides full electroweak calculation upto O(alpha) and contains higher order QCD corrections as well.

bazel

Homepage:
Spack package:
Versions:
4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.0, 0.1.4, 0.1.1
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
gnuconfig, ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.14, 1.13, 1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gnuconfig, gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.6, 8.0.0, 7.6.0, 7.4.4
Build Dependencies:
gnuconfig, libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.4, 5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Build Dependencies:
gnuconfig
Description:
Oracle Berkeley DB

berkeleygw

Homepage:
Spack package:
Versions:
3.0.1, 3.0, 2.1
Build Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py, fftw, amdfftw, openblas, amdblis
Link Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, fftw, amdfftw, openblas, amdblis
Run Dependencies:
python, py-numpy, py-setuptools, py-h5py
Test Dependencies:
perl
Description:
BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
gnuconfig, flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigdft-atlab

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3
Build Dependencies:
gnuconfig, mpi, openbabel, bigdft-futile
Link Dependencies:
mpi, openbabel, bigdft-futile
Description:
BigDFT-atlab: library for ATomic related operations.

bigdft-chess

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-CheSS: A module for performing Fermi Operator Expansions via Chebyshev Polynomials.

bigdft-core

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Link Dependencies:
cuda, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Run Dependencies:
python
Description:
BigDFT-core: the core components of BigDFT, an electronic structure calculation based on Daubechies wavelets.

bigdft-futile

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, libyaml, py-pyyaml, mpi
Link Dependencies:
cuda, blas, lapack, libyaml, py-pyyaml, mpi
Run Dependencies:
python
Description:
BigDFT-futile: a library handling most common FORTRAN low-level operations, like memory managment, profiling routines, I/O operations. It also supports yaml output and parsing for fortran programs. It also provides wrappers routines to MPI and linear algebra operations. This library is intensively used in BigDFT packages.

bigdft-libabinit

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, mpi, libxc, bigdft-futile
Link Dependencies:
mpi, libxc, bigdft-futile
Run Dependencies:
python
Description:
BigDFT-libABINIT: this is a subsection of files coming from ABINIT software package, to which BigDFT has been coupled since the early days. It handles different parts like symmetries, ewald corrections, PAW routines, density and potential mixing routines and some MD minimizers.

bigdft-psolver

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-Psolver: a flexible real-space Poisson Solver based on Interpolating Scaling Functions. It constitutes a fundamental building block of BigDFT code, and it can also be used separately and linked to other codes.

bigdft-spred

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Link Dependencies:
blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Run Dependencies:
python
Description:
BigDFT-spred: a library for structure prediction tools, that is compiled on top of BigDFT routines.

bigdft-suite

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Link Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Run Dependencies:
python
Description:
BigDFT-suite: the complete suite of BigDFT for electronic structure calculation based on Daubechies wavelets.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
gnuconfig, pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.38, 2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
gnuconfig, zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
gnuconfig, boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
gnuconfig, diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
gnuconfig, glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blackhat

Homepage:
Spack package:
Versions:
0.9.9
Build Dependencies:
gnuconfig, qd, python
Link Dependencies:
qd, python
Run Dependencies:
python
Description:
Blackhat MC generator

blaspp

Homepage:
Spack package:
Versions:
master, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
gnuconfig, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
37, 35
Build Dependencies:
libpng, libuuid, mysql-client
Link Dependencies:
libpng, libuuid, mysql-client
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas, lapack, boost, hpx
Link Dependencies:
blas, lapack, boost, hpx
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
gnuconfig, python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Build Dependencies:
gnuconfig
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.5.1, 0.5.0, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20220330, 20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main, 2.8.1
Build Dependencies:
gnuconfig, autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, py-virtualenv, py-pip, py-wheel, zlib, libsigsegv
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib, libsigsegv
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Build Dependencies:
gnuconfig
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.79.0, 1.78.0, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.19.1, 2.19.0, 2.18.2, 2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-popgen

Homepage:
Spack package:
Versions:
2.4.1
Build Dependencies:
cmake, bpp-seq
Link Dependencies:
bpp-seq
Description:
The Bio++ Population Genetics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.6.1, 0.6.0, 0.5.0, 0.4.1, 0.4.0, 0.3.3, 0.3.1
Build Dependencies:
gnuconfig, pkgconfig, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Build Dependencies:
gnuconfig
Description:
A Binary Decision Diagram library.

bufr

Homepage:
Spack package:
Versions:
11.5.0
Build Dependencies:
cmake
Description:
The NOAA bufr library contains subroutines, functions and other utilities that can be used to read (decode) and write (encode) data in BUFR, which is a WMO standard format for the exchange of meteorological data. This is part of the NCEPLIBS project.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 2.1.1, 2.1.0, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig, libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
20210808
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
gnuconfig, tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.1, 1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop, 2.0.4, 2.0.2, 2.0.1
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Build Dependencies:
gnuconfig
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

c3d

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
cmake, itk
Link Dependencies:
itk
Description:
Image processing and conversion tool based on ITK.

ca-certificates-mozilla

Homepage:
Spack package:
Versions:
2022-03-29, 2022-03-18, 2022-02-01, 2021-10-26, 2021-09-30, 2021-07-05, 2021-05-25, 2021-04-13, 2021-01-19, 2020-12-08, 2020-10-14, 2020-07-22, 2020-06-24, 2020-01-01, 2019-11-27, 2019-10-16, 2019-08-28
Description:
The Mozilla CA certificate store in PEM format

cabana

Homepage:
Spack package:
Versions:
master, 0.4.0, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, googletest, kokkos-legacy, kokkos, arborx, hypre-cmake, heffte, mpi
Link Dependencies:
kokkos-legacy, kokkos, arborx, hypre-cmake, heffte, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cuda, cmake, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
cuda, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.4, 1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
gnuconfig, libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
gnuconfig, cairo, libsigcpp, pkgconfig
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cuda, cmake, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow, python
Link Dependencies:
cuda, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
main, 2022.03.0, 0.3.0, 0.2.3, 0.2.2, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, cub, blt
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cub, blt
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1, 0.0
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cans

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2, 1.1.0
Build Dependencies:
mpi, fftw
Link Dependencies:
mpi, fftw
Description:
CaNS (Canonical Navier-Stokes) is a code for massively-parallel numerical simulations of fluid flows. It aims at solving any fluid flow of an incompressible, Newtonian fluid that can benefit from a FFT-based solver for the second-order finite-difference Poisson equation in a 3D Cartesian grid.

cantera

Homepage:
Spack package:
Versions:
2.5.1, 2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.8.0, 0.7.0
Build Dependencies:
gnuconfig
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai, cub
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0.1, 3.11.11, 3.11.6, 3.11.5, 2.2.19
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks. For versions 5.7 and greater use the paraview package.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.1, 3.0.0-preview4, 3.0.0-preview3, 2.13.8, 2.13.7, 2.13.6, 2.13.5, 2.13.4, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
gnuconfig, coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cbflib

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
m4
Description:
CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
rpcsvc-proto, libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elfutils, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains collector and runtime contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package: