Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 5969 mainline packages:

3dtk nvptx-tools py-tomlkit
3proxy nvshmem py-tomopy
abduco nvtop py-toolz
abi-compliance-checker nwchem py-torch
abi-dumper nyancat py-torch-cluster
abinit ocaml py-torch-geometric
abseil-cpp ocamlbuild py-torch-nvidia-apex
abyss occa py-torch-scatter
accfft oce py-torch-sparse
acct oci-systemd-hook py-torch-spline-conv
accumulo ocl-icd py-torchaudio
ace oclgrind py-torchfile
ack oclint py-torchgeo
acl oclock py-torchmeta
acpica-tools octave py-torchmetrics
acpid octave-arduino py-torchsummary
activeharmony octave-control py-torchtext
activemq octave-gsl py-torchvision
acts octave-instrctl py-tornado
addrwatch octave-io py-tox
adept-utils octave-optim py-tpot
adf octave-quaternion py-tqdm
adiak octave-signal py-traceback2
adios octave-splines py-traitlets
adios2 octave-statistics py-traits
adlbx octave-struct py-traitsui
admixtools octave-symbolic py-transformers
adms octopus py-transforms3d
adol-c odc py-treehash
advancecomp of-catalyst py-triangle
adwaita-icon-theme of-precice py-tuiview
aegean omega-h py-twine
aeskeyfind ompss py-twisted
aespipe ompt-openmp py-typed-ast
agrep onednn py-typeguard
aida oniguruma py-typesentry
akantu onnx py-typing
alan ont-albacore py-typing-extensions
albany opa-psm2 py-tzlocal
albert opam py-ucsf-pyem
alembic opari2 py-ucx-py
alglib open-iscsi py-ujson
allpaths-lg open-isns py-umalqurra
alluxio openal-soft py-umi-tools
alpaka openbabel py-uncertainties
alpgen openblas py-unicycler
alps opencarp py-unidecode
alquimia opencascade py-unittest2
alsa-lib opencl-c-headers py-unittest2py3k
aluminum opencl-clhpp py-unshare
ambari opencl-headers py-update-checker
amber opencoarrays py-uproot
amdblis opencv py-uproot3
amdfftw opendx py-uproot3-methods
amdlibflame openexr py-uproot4
amdlibm openfast py-uritemplate
amdscalapack openfdtd py-urllib3
amg openfoam py-urwid
amg2013 openfoam-org py-us
amgx openfst py-usgs
aml opengl py-utils
amp openglu py-uvloop
ampl openimageio py-uvw
ampliconnoise openipmi py-uwsgi
amr-wind openjdk py-vcf-kit
amrex openjpeg py-vcrpy
amrvis openkim-models py-vcstool
anaconda2 openldap py-vcstools
anaconda3 openloops py-vcversioner
andi openmc py-vermin
angsd openmm py-versioneer
ant openmolcas py-vine
antimony openmpi py-virtualenv
antlr openmx py-virtualenv-clone
ants opennurbs py-virtualenvwrapper
aocc openpa py-visdom
aocl-sparse openpbs py-voluptuous
aoflagger openpmd-api py-vsc-base
aom openrasmol py-vsc-install
aomp openresty py-vsts
apachetop openscenegraph py-vsts-cd-manager
apcomp openslide py-walinuxagent
ape openslp py-wand
aperture-photometry openspeedshop py-wandb
apex openspeedshop-utils py-warlock
apfel openssh py-warpx
apple-libunwind openssl py-wasabi
apple-libuuid openstf py-watchdog
applewmproto opensubdiv py-wcsaxes
appres opentsdb py-wcwidth
apr openvdb py-weave
apr-util openvslam py-webencodings
aragorn openwsman py-webkit-server
arbor opium py-weblogo
arborx optional-lite py-webob
archer optipng py-websocket-client
argobots opus py-websockets
argon2 oracle-instant-client py-werkzeug
argp-standalone orbit2 py-wget
args orc py-whatshap
argtable orca py-wheel
aria2 orfm py-whichcraft
arm orientdb py-whoosh
arm-forge orthofiller py-widgetsnbextension
armadillo orthofinder py-wincertstore
arpack-ng orthomcl py-word2number
arrayfire osi py-workload-automation
arrow osmctools py-wradlib
asagi osqp py-wrapt
ascent ossp-uuid py-wstool
asciidoc osu-micro-benchmarks py-wub
asciidoc-py3 otf py-wxmplot
asdcplib otf2 py-wxpython
asdf-cxx p11-kit py-xarray
asio p3dfft3 py-xattr
aspa p4est py-xdot
aspcud p7zip py-xenv
aspect pacbio-daligner py-xgboost
aspell pacbio-damasker py-xlrd
aspell6-de pacbio-dazz-db py-xlsxwriter
aspell6-en pacbio-dextractor py-xlwt
aspell6-es pacifica-cli py-xmlrunner
aspera-cli packmol py-xmltodict
assimp pacparser py-xopen
astra pacvim py-xpyb
astral pagit py-xvfbwrapper
astyle pagmo py-xxhash
at-spi2-atk pajeng py-yacs
at-spi2-core pal py-yahmm
atf paml py-yajl
athena panda py-yamlreader
atk pandaseq py-yapf
atlas pandoc py-yarl
atmi pango py-yolk3k
atom-dft pangolin py-youtube-dl
atompaw pangomm py-yt
atop papi py-ytopt
attr papyrus py-zarr
audacious paradiseo py-zc-buildout
audacity parallel py-zc-lockfile
audit-userspace parallel-netcdf py-zict
augustus parallelio py-zipp
authd parallelmergetree py-zope-event
authselect paraver py-zope-interface
autoconf paraview py-zxcvbn
autoconf-archive parflow pythia6
autodock-gpu parmetis pythia8
autodock-vina parmgridgen python
autofact parmmg q-e-sirius
autogen parquet-cpp qbank
automaded parquet-format qbox
automake parsec qca
avizo parsimonator qcachegrind
aws-parallelcluster parsplice qd
awscli partitionfinder qemu
axel pasta qgis
axl patch qgraf
axom patchelf qhull
babelflow patchutils qjson
babeltrace pathfinder qmcpack
bacio pax-utils qmd-progress
backupninja pbbam qnnpack
bam-readcount pbmpi qorts
bamaddrg pbsuite qperf
bamdst pciutils qrupdate
bamtools pcl qscintilla
bamutil pcma qt
bannergrab pcre qt-creator
barrnap pcre2 qtgraph
bart pdc qthreads
barvinok pdf2svg qtkeychain
bash pdftk qualimap
bash-completion pdsh quantum-espresso
bashtop pdt quartz
bat pegtl qucs
batctl pennant quicksilver
bats percept quinoa
bazel percona-server quota
bbcp perfstubs qwt
bbmap perl qwtpolar
bc perl-acme-damn r
bcache perl-algorithm-diff r-a4
bcftools perl-alien-build r-a4base
bcl2fastq2 perl-alien-libxml2 r-a4classif
bdftopcf perl-alien-svn r-a4core
bdii perl-app-cmd r-a4preproc
bdw-gc perl-array-utils r-a4reporting
beagle perl-b-hooks-endofscope r-abadata
beakerlib perl-bio-searchio-hmmer r-abaenrichment
bear perl-bioperl r-abind
beast-tracer perl-bit-vector r-absseq
beast1 perl-cairo r-acde
beast2 perl-capture-tiny r-acepack
bedops perl-carp-clan r-acgh
bedtools2 perl-cgi r-acme
beforelight perl-class-data-inheritable r-ada
benchmark perl-class-inspector r-adabag
berkeley-db perl-class-load r-ade4
berkeleygw perl-class-load-xs r-adegenet
bertini perl-clone r-adegraphics
bgpdump perl-clone-choose r-adephylo
bib2xhtml perl-compress-raw-bzip2 r-adespatial
bigreqsproto perl-compress-raw-zlib r-adgoftest
bind9 perl-config-general r-adsplit
binutils perl-contextual-return r-aer
bioawk perl-cpan-meta-check r-afex
biobambam2 perl-data-dumper r-affxparser
biobloom perl-data-optlist r-affy
biopieces perl-data-stag r-affycomp
bird perl-date-manip r-affycompatible
bismark perl-db-file r-affycontam
bison perl-dbd-mysql r-affycoretools
bitlbee perl-dbd-pg r-affydata
bitmap perl-dbd-sqlite r-affyexpress
bitsery perl-dbi r-affyilm
blaspp perl-devel-cycle r-affyio
blasr perl-devel-globaldestruction r-affypdnn
blasr-libcpp perl-devel-overloadinfo r-affyplm
blast-legacy perl-devel-stacktrace r-affyqcreport
blast-plus perl-devel-symdump r-affyrnadegradation
blast2go perl-digest-md5 r-agdex
blat perl-dist-checkconflicts r-agilp
blaze perl-encode-locale r-agimicrorna
blis perl-error r-aims
bliss perl-eval-closure r-aldex2
blitz perl-exception-class r-allelicimbalance
blktrace perl-exporter-lite r-alpine
bloaty perl-exporter-tiny r-als
blogbench perl-extutils-config r-alsace
blt perl-extutils-depends r-altcdfenvs
bmake perl-extutils-helpers r-amap
bmi perl-extutils-installpaths r-amelia
bml perl-extutils-makemaker r-ampliqueso
bohrium perl-extutils-pkgconfig r-analysispageserver
boinc-client perl-ffi-checklib r-anaquin
bolt perl-file-chdir r-aneufinder
bonniepp perl-file-copy-recursive r-aneufinderdata
bookleaf-cpp perl-file-homedir r-animation
boost perl-file-listing r-annaffy
boostmplcartesianproduct perl-file-pushd r-annotate
botan perl-file-sharedir-install r-annotationdbi
bowtie perl-file-slurp r-annotationfilter
bowtie2 perl-file-slurp-tiny r-annotationforge
boxlib perl-file-slurper r-annotationhub
bpp-core perl-file-which r-anytime
bpp-phyl perl-font-ttf r-aod
bpp-phyl-omics perl-forks r-ape
bpp-seq perl-fth r-argparse
bpp-seq-omics perl-gd r-aroma-light
bpp-suite perl-gdgraph r-askpass
bracken perl-gdgraph-histogram r-assertive
braker perl-gdtextutil r-assertive-base
branson perl-getopt-tabular r-assertive-code
breakdancer perl-graph r-assertive-data
bref3 perl-graph-readwrite r-assertive-data-uk
breseq perl-hash-merge r-assertive-data-us
bridger perl-html-parser r-assertive-datetimes
brigand perl-html-tagset r-assertive-files
brltty perl-http-cookies r-assertive-matrices
brotli perl-http-daemon r-assertive-models
brpc perl-http-date r-assertive-numbers
brynet perl-http-message r-assertive-properties
bsseeker2 perl-http-negotiate r-assertive-reflection
bubblewrap perl-inline r-assertive-sets
bucky perl-inline-c r-assertive-strings
buddy perl-io-all r-assertive-types
bufr perl-io-compress r-assertthat
bumpversion perl-io-html r-backports
busco perl-io-prompt r-bamsignals
busybox perl-io-sessiondata r-base64
butter perl-io-socket-ssl r-base64enc
butterflypack perl-io-string r-bayesm
bwa perl-io-stringy r-bayesplot
bwtool perl-io-tty r-bbmisc
byacc perl-ipc-run r-beachmat
byobu perl-json r-beanplot
byte-unixbench perl-libwww-perl r-beeswarm
byteman perl-libxml-perl r-bfast
bzip2 perl-list-moreutils r-bfastspatial
c perl-list-moreutils-xs r-bglr
c-ares perl-log-log4perl r-bh
c-blosc perl-logger-simple r-biasedurn
c-blosc2 perl-lwp-mediatypes r-bibtex
c-lime perl-lwp-protocol-https r-bigalgebra
c3d perl-mailtools r-bigmemory
ca-certificates-mozilla perl-math-bezier r-bigmemory-sri
cabana perl-math-cdf r-bindr
cachefilesd perl-math-cephes r-bindrcpp
caffe perl-math-matrixreal r-bio3d
cairo perl-math-round r-biobase
cairomm perl-math-vecstat r-biocfilecache
caliper perl-mce r-biocgenerics
callflow perl-module-build r-biocinstaller
callpath perl-module-build-tiny r-biocmanager
camellia perl-module-implementation r-biocneighbors
camp perl-module-runtime r-biocparallel
camx perl-module-runtime-conflicts r-biocsingular
canal perl-moose r-biocstyle
candle-benchmarks perl-mozilla-ca r-biocversion
cantera perl-mro-compat r-biom-utils
canu perl-namespace-clean r-biomart
cap3 perl-net-http r-biomartr
capnproto perl-net-scp-expect r-biomformat
capstone perl-net-ssleay r-biostrings
cardioid perl-number-format r-biovizbase
care perl-object-insideout r-bit
casacore perl-package-deprecationmanager r-bit64
cask perl-package-stash r-bitops
casper perl-package-stash-xs r-blavaan
cassandra perl-padwalker r-blob
catalyst perl-parallel-forkmanager r-blockmodeling
catch2 perl-params-util r-bmp
cbc perl-params-validate r-bookdown
cbench perl-parse-recdescent r-boot
cbflib perl-path-tiny r-boruta
cblas perl-pdf-api2 r-brew
cbtf perl-pegex r-bridgesampling
cbtf-argonavis perl-perl-unsafe-signals r-brio
cbtf-argonavis-gui perl-perl-version r-brms
cbtf-krell perl-perl4-corelibs r-brobdingnag
cbtf-lanl perl-perl6-slurp r-broom
cc65 perl-perlio-gzip r-bsgenome
ccache perl-perlio-utf8-strict r-bsgenome-hsapiens-ucsc-hg19
ccfits perl-readonly r-bsseq
ccls perl-regexp-common r-bumphunter
ccs-qcd perl-scalar-list-utils r-c50
cctools perl-scalar-util-numeric r-ca
cdbfasta perl-set-intervaltree r-cairo
cdd perl-set-intspan r-callr
cddlib perl-set-scalar r-car
cdecimal perl-soap-lite r-caracas
cdhit perl-star-fusion r-cardata
cdo perl-statistics-basic r-caret
ceed perl-statistics-descriptive r-caretensemble
cereal perl-statistics-pca r-caroline
ceres-solver perl-sub-exporter r-category
cfitsio perl-sub-exporter-progressive r-catools
cgal perl-sub-identify r-cdcfluview
cgdb perl-sub-install r-cellranger
cgdcbxd perl-sub-name r-champ
cget perl-sub-uplevel r-champdata
cgl perl-svg r-checkmate
cgm perl-swissknife r-checkpoint
cgns perl-sys-sigaction r-chemometrics
chai perl-task-weaken r-chipseq
changa perl-term-readline-gnu r-chron
channelflow perl-termreadkey r-circlize
chapel perl-test-cleannamespaces r-circstats
chaplin perl-test-deep r-class
charliecloud perl-test-differences r-classint
charmpp perl-test-exception r-cli
chatterbug perl-test-fatal r-clipr
check perl-test-memory-cycle r-clisymbols
chgcentre perl-test-more r-clue
chill perl-test-most r-cluster
chlorop perl-test-needs r-clustergeneration
chombo perl-test-output r-clusterprofiler
chrony perl-test-requires r-cner
chrpath perl-test-requiresinternet r-coda
cinch perl-test-warn r-codetools
circos perl-test-warnings r-codex
cistem perl-text-csv r-coin
citcoms perl-text-diff r-colorspace
cityhash perl-text-format r-colourpicker
ck perl-text-simpletable r-combinat
clamav perl-text-soundex r-commonmark
clamr perl-text-unidecode r-complexheatmap
clapack perl-thread-queue r-compositions
clara perl-threads r-compquadform
claw perl-time-hires r-condop
cleaveland4 perl-time-piece r-conquer
cleverleaf perl-timedate r-construct
clfft perl-tk r-convevol
clhep perl-try-tiny r-copula
cli11 perl-uri r-corhmm
clinfo perl-want r-corpcor
clingo perl-www-robotrules r-corrplot
clingo-bootstrap perl-xml-dom r-countrycode
cln perl-xml-dom-xpath r-covr
cloc perl-xml-filter-buffertext r-cowplot
cloog perl-xml-libxml r-cpp11
cloverleaf perl-xml-libxslt r-crayon
cloverleaf3d perl-xml-namespacesupport r-credentials
clp perl-xml-parser r-crosstalk
clustal-omega perl-xml-parser-lite r-crul
clustalw perl-xml-quote r-ctc
cmake perl-xml-regexp r-cubature
cmaq perl-xml-sax r-cubist
cmark perl-xml-sax-base r-curl
cminpack perl-xml-sax-writer r-dada2
cmocka perl-xml-simple r-data-table
cmockery perl-xml-twig r-dbi
cmor perl-xml-writer r-dbplyr
cnmem perl-xml-xpathengine r-debugme
cnpy perl-yaml r-decipher
cntk perl-yaml-libyaml r-delayedarray
cntk1bitsgd pestpp r-delayedmatrixstats
cnvnator petsc r-deldir
codar-cheetah pexsi r-dendextend
code-server pfapack r-deoptim
codec2 pfft r-deoptimr
codes pflask r-deriv
coevp pflotran r-desc
cohmm pfunit r-deseq
coin3d pgdspider r-deseq2
coinhsl pgi r-desolve
coinutils pgplot r-devtools
collectd phantompeakqualtools r-dexseq
collier phast r-diagrammer
colm phasta r-dicekriging
colordiff phist r-dichromat
comd phoenix r-diffobj
comgr photos r-diffusionmap
commons-lang photos-f r-digest
commons-lang3 php r-diptest
commons-logging phrap-crossmatch-swat r-dirichletmultinomial
compadre phred r-dismo
compiz phylip r-distributional
compositeproto phylobayesmpi r-diversitree
conda4aarch64 phyluce r-dmrcate
conduit picard r-dnacopy
connect-proxy picsar r-do-db
conserver picsarlite r-domc
console-bridge pidx r-doparallel
constype pig r-dorng
consul pigz r-dose
converge pilon r-dosnow
cool pindel r-dotcall64
coral pinentry r-downloader
corenlp pinfo r-dplyr
coreutils pipework r-dqrng
corset piranha r-dss
cosbench pism r-dt
cosma pixman r-dtplyr
cosmoflow-benchmark pixz r-dtw
cosmomc pkg-config r-dygraphs
cosp2 pkgconf r-dynamictreecut
cotter pktools r-e1071
couchdb planck-likelihood r-earth
cowsay plasma r-ecp
cp2k platypus r-edger
cpio plink r-effects
cpmd plink-ng r-elemstatlearn
cpp-argparse plplot r-ellipse
cpp-httplib plumed r-ellipsis
cpp-termcolor ply r-emmeans
cppad pmdk r-emmli
cppcheck pmemkv r-energy
cppgsl pmerge r-enrichplot
cpprestsdk pmgr-collective r-ensembldb
cppunit pmix r-envstats
cppzmq pmlib r-ergm
cpu-features pnfft r-estimability
cpuinfo pngquant r-europepmc
cqrlib pngwriter r-evaluate
cquery pnmpi r-evd
cracklib poamsa r-exactextractr
cradl pocl r-exomecopy
cram podio r-exomedepth
cray-fftw poke r-experimenthub
cray-libsci polymake r-expint
cray-mpich poplddecay r-expm
cray-mvapich2 poppler r-factoextra
creduce poppler-data r-factominer
cromwell popt r-fansi
cromwell-womtool porta r-farver
cronie portage r-fastcluster
crtm portcullis r-fastdigest
cryptopp postgis r-fastica
cryptsetup postgresql r-fastmap
csa-c povray r-fastmatch
cscope powerapi r-fastmatrix
csdp powertop r-fdb-infiniummethylation-hg18
ctffind ppl r-fdb-infiniummethylation-hg19
ctpl pplacer r-ff
ctre ppopen-appl-amr-fdm r-fftwtools
cub ppopen-appl-bem r-fgsea
cube ppopen-appl-bem-at r-fields
cube-blade ppopen-appl-dem-util r-filehash
cubelib ppopen-appl-fdm r-findpython
cubew ppopen-appl-fdm-at r-fit-models
cubist ppopen-appl-fem r-fitdistrplus
cuda ppopen-appl-fvm r-flashclust
cuda-memtest ppopen-at r-flexclust
cudnn ppopen-math-mp r-flexmix
cufflinks ppopen-math-vis r-fnn
cunit prank r-forcats
cupla precice r-foreach
cups predixy r-forecast
curl premake-core r-foreign
cusz presentproto r-formatr
cvector preseq r-formula
cvs presto r-fpc
cxx price r-fpcompare
cxxopts primer3 r-fracdiff
cxxtest prinseq-lite r-fs
cyrus-sasl printproto r-futile-logger
czmq prism r-futile-options
dakota prmon r-future
daligner prng r-future-apply
dalton probconsrna r-gamlss
damageproto procenv r-gamlss-data
damaris process-in-process r-gamlss-dist
damask procps r-gamm4
damask-grid procps-ng r-gargle
damask-mesh prod-util r-gbm
damselfly prodigal r-gbrd
darshan-runtime professor r-gcrma
darshan-util profugusmc r-gdalutils
dash proj r-gdata
datamash prokka r-gdsfmt
dataspaces prometheus r-geiger
datatransferkit protobuf r-genefilter
date protobuf-c r-genelendatabase
dateutils proxymngr r-genemeta
davix prrte r-geneplotter
dbcsr pruners-ninja r-generics
dbow2 ps-lite r-genetics
dbus psi4 r-genie3
dbus-glib psimd r-genomeinfodb
dbxtool pslib r-genomeinfodbdata
dcap psm r-genomicalignments
dcm2niix psmc r-genomicfeatures
dcmtk pstreams r-genomicranges
dd4hep pthreadpool r-gensa
ddd pugixml r-geomorph
dealii pulseaudio r-geonames
dealii-parameter-gui pumi r-geoquery
debbuild pv r-geor
debugedit pvm r-geosphere
decentralized-internet pxz r-gert
deconseq-standalone py-3to2 r-getopt
dejagnu py-4suite-xml r-getoptlong
delly2 py-abcpy r-ggally
delphes py-abipy r-ggbeeswarm
delta py-absl-py r-ggbio
denovogear py-accimage r-ggdendro
dftbplus py-acme-tiny r-ggforce
dftd3-lib py-adal r-ggjoy
dftd4 py-adb-enhanced r-ggmap
dftfe py-addict r-ggplot2
dhpmm-f py-adios r-ggplotify
dhtest py-advancedhtmlparser r-ggpubr
dia py-aenum r-ggraph
dialign py-affine r-ggrepel
dialign-tx py-agate r-ggridges
diamond py-agate-dbf r-ggsci
dicom3tools py-agate-excel r-ggsignif
diffmark py-agate-sql r-ggthemes
diffsplice py-aiobotocore r-ggvis
diffutils py-aiodns r-gh
dihydrogen py-aiofiles r-gistr
dimemas py-aiohttp r-git2r
ding-libs py-aiohttp-cors r-gitcreds
dire py-aioitertools r-glimma
direnv py-aioredis r-glmnet
discovar py-alabaster r-globaloptions
discovardenovo py-alembic r-globals
disktype py-altgraph r-globaltest
dislin py-amqp r-glue
distcc py-angel r-gmodels
diy py-aniso8601 r-gmp
dlib py-annexremote r-go-db
dlpack py-ansi2html r-goftest
dmd py-ansible r-gofuncr
dmidecode py-antlr4-python3-runtime r-googledrive
dmlc-core py-anuga r-googlesheets4
dmtcp py-anyio r-googlevis
dmxproto py-anytree r-goplot
dnsmap py-apache-beam r-gosemsim
dnsmasq py-apache-libcloud r-goseq
dnstop py-apex r-gostats
dnstracer py-apipkg r-gower
docbook-xml py-appdirs r-gparotation
docbook-xsl py-applicationinsights r-gplots
dock py-appnope r-graph
dos2unix py-apptools r-graphlayouts
dosfstools py-apscheduler r-grbase
dotconf py-arcgis r-gridbase
dotnet-core-sdk py-archspec r-gridextra
double-conversion py-argcomplete r-gridgraphics
doxygen py-argh r-gsa
dpdk py-argon2-cffi r-gsalib
draco py-argparse r-gseabase
dracut py-args r-gsl
dramsim2 py-arrow r-gsodr
dramsim3 py-arviz r-gss
dray py-asciitree r-gstat
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dri3proto py-ase r-gtable
drill py-asgiref r-gtools
dropwatch py-asn1crypto r-gtrellis
druid py-aspy-yaml r-gviz
ds py-asserts r-gwmodel
dsdp py-asteval r-haven
dsqss py-astor r-hdf5array
dsrc py-astpretty r-hdf5r
dssp py-astroid r-hexbin
dtc py-astropy r-hh
dtcmp py-astropy-healpix r-highr
dtf py-astropy-helpers r-hmisc
duperemove py-astunparse r-hms
dyninst py-async-generator r-hoardr
dysco py-async-lru r-htmltable
e2fsprogs py-async-timeout r-htmltools
ea-utils py-asyncio r-htmlwidgets
eagle py-atomicwrites r-httpcode
earlyoom py-atpublic r-httpuv
easybuild py-atropos r-httr
ebms py-attrs r-hwriter
ecbuild py-audioread r-hypergraph
eccodes py-autograd r-ica
ecdsautils py-autograd-gamma r-ids
ecflow py-autopep8 r-igraph
eckit py-auxlib r-illumina450probevariants-db
eclipse-gcj-parser py-avro r-illuminahumanmethylation450kanno-ilmn12-hg19
ecos py-avro-json-serializer r-illuminahumanmethylation450kmanifest
ecoslim py-avro-python3 r-illuminahumanmethylationepicanno-ilm10b4-hg19
ecp-data-vis-sdk py-awesome-slugify r-illuminahumanmethylationepicmanifest
ecp-proxy-apps py-awkward r-illuminaio
ed py-awkward0 r-imager
editline py-awkward1 r-impute
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edm4hep py-azure-batch r-ini
eem py-azure-cli r-inline
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eigen py-azure-cli-core r-interactivedisplaybase
eigenexa py-azure-cli-nspkg r-intervals
elasticsearch py-azure-cli-telemetry r-inum
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elfutils py-azure-cosmos r-irdisplay
elk py-azure-datalake-store r-irkernel
elmerfem py-azure-functions-devops-build r-irlba
elpa py-azure-graphrbac r-isdparser
elsd py-azure-identity r-islr
elsdc py-azure-keyvault r-iso
elsi py-azure-keyvault-certificates r-isoband
emacs py-azure-keyvault-keys r-isva
ember py-azure-keyvault-nspkg r-iterators
emboss py-azure-keyvault-secrets r-jade
embree py-azure-loganalytics r-janitor
enca py-azure-mgmt-advisor r-jaspar2018
enchant py-azure-mgmt-apimanagement r-jomo
energyplus py-azure-mgmt-appconfiguration r-jpeg
entrezdirect py-azure-mgmt-applicationinsights r-jsonlite
entt py-azure-mgmt-authorization r-kegg-db
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enzo py-azure-mgmt-batchai r-keggrest
enzyme py-azure-mgmt-billing r-kernlab
eospac py-azure-mgmt-botservice r-kernsmooth
eq-r py-azure-mgmt-cdn r-kknn
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erlang py-azure-mgmt-consumption r-kpmt
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es-shell py-azure-mgmt-containerservice r-labelled
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essl py-azure-mgmt-datalake-analytics r-lars
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evemu py-azure-mgmt-eventgrid r-lazyeval
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expat py-azure-mgmt-privatedns r-log4r
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express py-azure-mgmt-recoveryservices r-lpsolve
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eztrace py-azure-mgmt-redis r-lumi
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fabtests py-azure-mgmt-search r-magrittr
fairlogger py-azure-mgmt-security r-makecdfenv
faiss py-azure-mgmt-servicebus r-maldiquant
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falcon py-azure-mgmt-sql r-mapproj
fann py-azure-mgmt-sqlvirtualmachine r-maps
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feh py-backports-lzma r-mime
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ffr py-bcbio-gff r-mlr
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ffte py-bcrypt r-mmwrweek
fftw py-beancount r-mnormt
fgsl py-beautifulsoup4 r-mockery
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figlet py-bids-validator r-modelr
figtree py-bigfloat r-modeltools
file py-billiard r-mpm
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findbugs py-biopandas r-munsell
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fish py-black r-mzr
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fj py-blessed r-nanotime
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flac py-blis r-network
flann py-blosc r-networkd3
flap py-bmap-tools r-neuralnet
flash py-bokeh r-nfactors
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flatcc py-boto r-nlme
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flux-core py-cairocffi r-optimx
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fmt py-catalogue r-organismdbi
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form py-certifi r-paramhelpers
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fortran py-cf-units r-partykit
fortrilinos py-cffi r-patchwork
foundationdb py-cfgrib r-pathview
fox py-cfgv r-pbapply
fp16 py-cftime r-pbdzmq
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fpchecker py-chainer r-pbkrtest
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fpocket py-charm4py r-permute
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freebayes py-cheetah3 r-pheatmap
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fullock py-cnvkit r-pmcmr
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fxdiv py-cogent r-polyclip
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g4photonevaporation py-configobj r-processx
g4pii py-configparser r-prodlim
g4radioactivedecay py-contextily r-progress
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gams py-cookiecutter r-protgenerics
ganglia py-cookies r-proto
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gcc py-cupy r-questionr
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gccxml py-cutadapt r-qvalue
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geant4-data py-damask r-rann
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genomeworks py-datalad-neuroimaging r-rcppblaze
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geode py-datasets r-rcppcnpy
geoip py-dateparser r-rcppdate
geoip-api-c py-dbf r-rcppeigen
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geos py-deap r-rcppparallel
gettext py-debtcollector r-rcppprogress
gflags py-debugpy r-rcurl
gfsio py-decorator r-rda
gh py-deeptools r-rdpack
ghost py-deeptoolsintervals r-readbitmap
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gitconddb py-distributed r-reprex
gl2ps py-distro r-reproducible
glew py-django r-require
glfmultiples py-dlcpar r-reshape
glfw py-dm-tree r-reshape2
glib py-dnaio r-reticulate
glib-networking py-docker r-rex
glibmm py-dockerpy-creds r-rferns
glimmer py-docopt r-rgdal
glm py-docutils r-rgenoud
global py-docutils-stubs r-rgeos
globalarrays py-dominate r-rgexf
glog py-dotnetcore2 r-rgl
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glpk py-doxypypy r-rgraphviz
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gmime py-dulwich r-rinside
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gnome-common py-eccodes r-rmariadb
gnuconfig py-ecdsa r-rmarkdown
gnupg py-ecos r-rminer
gnuplot py-edffile r-rmpfr
gnuradio py-editdistance r-rmpi
gnutls py-efficientnet-pytorch r-rms
go py-eg r-rmutil
go-bootstrap py-einops r-rmysql
go-md2man py-elasticsearch r-rnaseqmap
gobject-introspection py-elephant r-rncl
goblin-hmc-sim py-emcee r-rnexml
googletest py-emoji r-rngtools
gosam-contrib py-empy r-rnoaa
gotcha py-entrypoints r-robust
gource py-enum34 r-robustbase
gpdb py-envisage r-roc
gperf py-ephem r-rocr
gperftools py-epydoc r-rodbc
gpgme py-espresso r-rook
gpi-2 py-espressopp r-rots
gplates py-et-xmlfile r-roxygen2
gprolog py-etelemetry r-rpart
gptl py-eventlet r-rpart-plot
gpu-burn py-execnet r-rpmm
gqrx py-exifread r-rpostgres
gr-osmosdr py-exodus-bundler r-rpostgresql
grabix py-extension-helpers r-rprojroot
grace py-extras r-rrblup
grackle py-ez-setup r-rrcov
gradle py-f90wrap r-rrpp
grads py-fabric r-rsamtools
grafana py-falcon r-rsconnect
grandr py-fallocate r-rsnns
graph500 py-fastaindex r-rsolnp
graphblast py-fastavro r-rspectra
graphicsmagick py-fastcache r-rsqlite
graphite2 py-fastcluster r-rstan
graphlib py-fastcov r-rstantools
graphmap py-fastdtw r-rstatix
graphviz py-fasteners r-rstudioapi
grass py-fastrlock r-rsvd
graylog2-server py-faststructure r-rtracklayer
grep py-fava r-rtsne
grib-api py-fenics-basix r-runit
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gridlab-d py-fenics-dolfinx r-ruv
grnboost py-fenics-ffc r-rvcheck
groff py-fenics-ffcx r-rversions
gromacs py-fenics-fiat r-rvest
gromacs-chain-coordinate py-fenics-instant r-rviennacl
grpc py-fenics-ufl r-rzmq
gsettings-desktop-schemas py-filelock r-s2
gsl py-filemagic r-s4vectors
gslib py-filterpy r-samr
gtk-doc py-findlibs r-sandwich
gtkmm py-fiona r-satellite
gtkorvo-atl py-fiscalyear r-scales
gtkorvo-cercs-env py-fisher r-scater
gtkorvo-dill py-fits-tools r-scattermore
gtkorvo-enet py-fixtures r-scatterpie
gtkplus py-flake8 r-scatterplot3d
gtksourceview py-flake8-import-order r-scrime
gts py-flake8-polyfill r-sctransform
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guacamole-server py-flask r-sdmtools
guidance py-flask-babel r-segmented
guile py-flask-compress r-selectr
gunrock py-flask-cors r-seqinr
gurobi py-flask-restful r-seqlogo
gxsview py-flask-socketio r-servr
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h2database py-flatten-dict r-seurat
h5bench py-flexmock r-sf
h5cpp py-flexx r-sfsmisc
h5hut py-flit r-shadowtext
h5part py-flit-core r-shape
h5utils py-flufl-lock r-shiny
h5z-zfp py-flye r-shinydashboard
hacckernels py-fn-py r-shinyfiles
hackrf-host py-fortran-language-server r-shinyjs
hadoop py-fortranformat r-shinystan
hal py-fparser r-shinythemes
halc py-fprettify r-shortread
half py-freezegun r-siggenes
hama py-fsspec r-simpleaffy
hapcut2 py-ftfy r-singlecellexperiment
hapdip py-funcsigs r-sitmo
haploview py-functools32 r-sm
haproxy py-funcy r-smoof
hardlink py-fury r-sn
harfbuzz py-fusepy r-snakecase
harminv py-future r-snow
hashcat py-futures r-snowfall
haveged py-fuzzywuzzy r-snprelate
hazelcast py-fypp r-snpstats
hbase py-gast r-som
hbm-dramsim2 py-gcovr r-somaticsignatures
hc py-gcs-oauth2-boto-plugin r-sourcetools
hcol py-gdbgui r-sp
hcoll py-gdc-client r-spacetime
hdf py-gee-asset-manager r-spades
hdf-eos2 py-geeadd r-spades-addins
hdf-eos5 py-geeup r-spades-core
hdf5 py-gemini r-spades-tools
hdf5-blosc py-genders r-spam
hdf5-vol-log py-geneimpacts r-sparsem
hdfview py-genshi r-sparsematrixstats
healpix-cxx py-gensim r-spatial
heaptrack py-geoalchemy2 r-spatialeco
heffte py-geocube r-spatialpack
helics py-geographiclib r-spatialreg
help2man py-geopandas r-spatstat
henson py-geoplot r-spatstat-data
hepmc py-geopy r-spatstat-utils
hepmc3 py-getorganelle r-spdata
hepmcanalysis py-gevent r-spdep
heppdt py-gf256 r-speedglm
heputils py-gffutils r-spem
hercules py-git-review r-splancs
herwig3 py-gitdb r-splitstackshape
herwigpp py-gitpython r-sqldf
hevea py-glmnet r-squarem
hibench py-globus-sdk r-squash
hic-pro py-gluoncv r-sseq
hicolor-icon-theme py-gnuplot r-stabledist
highfive py-goatools r-stanheaders
highwayhash py-gooey r-stargazer
hiop py-google r-statmod
hip py-google-api-core r-statnet-common
hip-rocclr py-google-api-python-client r-stringfish
hipace py-google-apitools r-stringi
hipblas py-google-auth r-stringr
hipcub py-google-auth-httplib2 r-strucchange
hipfft py-google-auth-oauthlib r-styler
hipfort py-google-cloud-core r-subplex
hipify-clang py-google-cloud-storage r-summarizedexperiment
hipsparse py-google-pasta r-suppdists
hipsycl py-google-resumable-media r-survey
hiredis py-googleapis-common-protos r-survival
hisat2 py-googledrivedownloader r-sva
hisea py-gosam r-svglite
hive py-gpaw r-sys
hivex py-gpustat r-systemfonts
hmmer py-gputil r-tarifx
hohqmesh py-gpy r-taxizedb
homer py-gpyopt r-tclust
hoomd-blue py-gpytorch r-teachingdemos
hoppet py-gql r-tensor
hotspot py-grandalf r-tensora
hpcc py-graphql-core r-tester
hpccg py-graphviz r-testit
hpcg py-greenlet r-testthat
hpctoolkit py-grequests r-tfbstools
hpcviewer py-griddataformats r-tfisher
hpcx-mpi py-grpcio r-tfmpvalue
hpddm py-gsd r-th-data
hpgmg py-gsi r-threejs
hping py-gsutil r-tibble
hpl py-guidata r-tictoc
hpx py-guiqwt r-tidycensus
hpx5 py-gym r-tidygraph
hsa-rocr-dev py-h11 r-tidyr
hsakmt py-h2 r-tidyselect
hsakmt-roct py-h5glance r-tidyverse
hsf-cmaketools py-h5netcdf r-tiff
hssp py-h5py r-tigris
hstr py-h5sh r-timedate
htop py-hacking r-tinytex
htslib py-haphpipe r-tmixclust
http-get py-hatchet r-tmvnsim
http-load py-hdbscan r-topgo
http-parser py-hdfs r-triebeard
http-ping py-healpy r-trimcluster
http-post py-heapdict r-truncdist
httpd py-hepdata-validator r-truncnorm
httperf py-hepunits r-trust
httpie py-hieroglyph r-tseries
httping py-hiredis r-tsne
httpress py-holland-backup r-ttr
hub py-horovod r-tweenr
hudi py-hpack r-txdb-hsapiens-ucsc-hg18-knowngene
hugo py-hpcbench r-txdb-hsapiens-ucsc-hg19-knowngene
hunspell py-hpccm r-tximport
hw-probe py-hstspreload r-tximportdata
hwdata py-html2text r-tzdb
hwloc py-html5lib r-ucminf
hybpiper py-htmlgen r-udunits2
hybrid-lambda py-htseq r-units
hybridsim py-httpbin r-upsetr
hydra py-httpcore r-urca
hydrogen py-httplib2 r-urltools
hyperfine py-httpretty r-usethis
hyperscan py-httptools r-utf8
hyphen py-httpx r-uuid
hyphy py-huggingface-hub r-uwot
hypre py-humanfriendly r-v8
hypre-cmake py-humanize r-variantannotation
i3 py-hvac r-varselrf
ibm-databroker py-hyperframe r-vcd
ibm-java py-hyperopt r-vcfr
ibmisc py-hypothesis r-vctrs
icarus py-ibm-cloud-sdk-core r-vegan
iceauth py-ibm-watson r-vfs
icedtea py-ics r-vgam
icet py-identify r-vioplot
ico py-idna r-vipor
icu4c py-idna-ssl r-viridis
id3lib py-illumina-utils r-viridislite
idba py-ilmbase r-visnetwork
idl py-imageio r-vroom
iegenlib py-imageio-ffmpeg r-vsn
ignite py-imagesize r-waldo
igprof py-imgaug r-watermelon
igraph py-iminuit r-webshot
igv py-immutables r-wgcna
igvtools py-importlib r-whisker
ike-scan py-importlib-metadata r-withr
ilmbase py-importlib-resources r-wk
ima-evm-utils py-inference-schema r-xde
imagemagick py-inheritance r-xfun
imake py-iniconfig r-xgboost
imlib2 py-iniparse r-xlconnect
imp py-intel-openmp r-xlconnectjars
impute2 py-intervaltree r-xlsx
infernal py-invoke r-xlsxjars
influxdb py-iocapture r-xmapbridge
iniparser py-ipaddress r-xml
inputproto py-ipdb r-xml2
intel py-ipycanvas r-xnomial
intel-daal py-ipyevents r-xopen
intel-gpu-tools py-ipykernel r-xtable
intel-ipp py-ipyparallel r-xts
intel-llvm py-ipython r-xvector
intel-mkl py-ipython-cluster-helper r-yaimpute
intel-mpi py-ipython-genutils r-yaml
intel-mpi-benchmarks py-ipyvtk-simple r-yapsa
intel-oneapi-advisor py-ipywidgets r-yaqcaffy
intel-oneapi-ccl py-irpf90 r-yarn
intel-oneapi-compilers py-iso8601 r-zcompositions
intel-oneapi-dal py-isodate r-zeallot
intel-oneapi-dnn py-isort r-zip
intel-oneapi-dpl py-itk r-zlibbioc
intel-oneapi-inspector py-itsdangerous r-zoo
intel-oneapi-ipp py-jaraco-functools r3d
intel-oneapi-ippcp py-javaproperties rabbitmq
intel-oneapi-mkl py-jdatetime racon
intel-oneapi-mpi py-jdcal raft
intel-oneapi-tbb py-jedi ragel
intel-oneapi-vpl py-jeepney raja
intel-oneapi-vtune py-jellyfish ramulator
intel-parallel-studio py-jinja2 randfold
intel-pin py-jinja2-time random123
intel-tbb py-jmespath randrproto
intel-xed py-joblib range-v3
interproscan py-jplephem rankstr
intltool py-jprops rapidjson
ioapi py-jpype1 raptor2
ior py-jsmin rasdaemon
iozone py-json-get rasqal
ip py-json5 ravel
ip2 py-jsondiff raxml
ipcalc py-jsonpatch raxml-ng
iperf2 py-jsonpath-ng ray
iperf3 py-jsonpickle rccl
ipopt py-jsonpointer rclone
iproute2 py-jsonref rdc
iptraf-ng py-jsonschema rdkit
iq-tree py-junit-xml rdma-core
irep py-jupyter rdp-classifier
isaac py-jupyter-client rdptools
isaac-server py-jupyter-console re2
isc-dhcp py-jupyter-core re2c
isescan py-jupyter-packaging readfq
isl py-jupyter-server readline
iso-codes py-jupyter-telemetry recola
ispc py-jupyterhub recola-sm
istio py-jupyterlab recon
itensor py-jupyterlab-pygments recorder
itk py-jupyterlab-server recordproto
itstool py-jupyterlab-widgets redis
itsx py-jupytext reditools
iwyu py-keras redland
jackcess py-keras-applications redland-bindings
jafka py-keras-preprocessing redset
jags py-kerberos redundans
jali py-keyboard reframe
jansi py-keyring regcm
jansi-native py-keyrings-alt relax
jansson py-keystoneauth1 relion
jasper py-kitchen remhos
jbigkit py-kiwisolver rempi
jblob py-kmodes rename
jchronoss py-knack rendercheck
jdk py-kombu renderproto
jellyfish py-kornia repeatmasker
jemalloc py-kubernetes repeatmodeler
jetty-project py-labours repeatscout
jhpcn-df py-lap reprimand
jimtcl py-lark-parser resourceproto
jline3 py-latexcodec restic
jmol py-lazy revbayes
jose py-lazy-object-proxy revocap-coupler
jpegoptim py-lazy-property revocap-refiner
jq py-lazyarray rgb
json-c py-leather rhash
json-cwx py-lerc rinetd
json-fortran py-libconf ripgrep
json-glib py-libensemble rivet
jsoncpp py-librosa rlwrap
jstorm py-lifelines rmats
jube py-lightgbm rmgdft
judy py-ligo-segments rmlab
julea py-line-profiler rna-seqc
julia py-linecache2 rnaquast
junit4 py-lineenhancer rnaz
k8 py-lit rng-tools
kadath py-llvmlite rngstreams
kafka py-lmfit rnpletal
kahip py-lmodule rocalution
kaiju py-localcider rocblas
kaks-calculator py-locket rocfft
kaldi py-lockfile rocketmq
kallisto py-logilab-common rocksdb
karma py-louie rockstar
kassiopeia py-lru-dict rocm-bandwidth-test
kbd py-lscsoft-glue rocm-clang-ocl
kbproto py-luigi rocm-cmake
kcov py-lxml rocm-dbgapi
kdiff3 py-lz4 rocm-debug-agent
kea py-lzstring rocm-device-libs
kealib py-m2r rocm-gdb
keepalived py-macholib rocm-opencl
keepassxc py-machotools rocm-openmp-extras
kentutils py-macs2 rocm-smi
keyutils py-maestrowf rocm-smi-lib
kibana py-magic rocm-tensile
kicad py-mailchecker rocm-validation-suite
kim-api py-mako rocminfo
kinesis py-mapclassify rocprim
kineto py-markdown rocprofiler-dev
kitty py-markdown-it-py rocrand
kmergenie py-markdown2 rocsolver
kmod py-markovify rocsparse
knem py-markupsafe rocthrust
kokkos py-matplotlib roctracer-dev
kokkos-kernels py-matplotlib-inline roctracer-dev-api
kokkos-kernels-legacy py-mayavi rodinia
kokkos-legacy py-mccabe roms
kokkos-nvcc-wrapper py-mdanalysis root
kraken py-mdit-py-plugins rose
kraken2 py-mechanize ross
krb5 py-memory-profiler routino
krims py-memprof rpcsvc-proto
kripke py-mercantile rpm
kubernetes py-merlin rr
kvasir-mpl py-meshio rrdtool
kvtree py-metasv rsbench
kylin py-methylcode rsem
ladot py-metpy rstart
laghos py-mffpy rstudio
lame py-mg-rast-tools rsync
lammps py-mido rsyslog
landsfcutil py-mikado rt-tests
lapackpp py-minrpc rtags
last py-misopy rtax
lastz py-mistune ruby
laszip py-mixedhtseq ruby-asciidoctor
latex2html py-mlperf-logging ruby-erubis
latte py-mlxtend ruby-gnuplot
launchmon py-mmcv ruby-hpricot
lazyten py-mmtf-python ruby-mustache
lbann py-mne ruby-narray
lbxproxy py-mo-pack ruby-rake
lbzip2 py-mock ruby-rdiscount
lcals py-modred ruby-ronn
lcio py-moltemplate ruby-rubyinline
lcms py-monotonic ruby-svn2git
lcov py-monty ruby-terminal-table
ldak py-more-itertools ruby-thor
ldc py-motmetrics ruby-tmuxinator
ldc-bootstrap py-mouseinfo ruby-unicode-display-width
legion py-moviepy ruby-xdg
lemon py-mpi4py ruby-zentest
leptonica py-mpld3 rust
lerc py-mpmath rust-bindgen
less py-mrcfile sabre
lesstif py-msal saga-gis
leveldb py-msal-extensions sailfish
lftp py-msgpack salmon
lhapdf py-msgpack-numpy salmon-tddft
lhapdf5 py-msrest salome-configuration
libabigail py-msrestazure salome-med
libaec py-multi-key-dict salome-medcoupling
libaio py-multidict sambamba
libao py-multipledispatch samblaster
libapplewm py-multiprocess samrai
libapreq2 py-multiqc samtools
libarchive py-munch sandbox
libasr py-murmurhash satsuma2
libassuan py-mutagen savanna
libatasmart py-mx saws
libatomic-ops py-myhdl sblim-sfcc
libbacktrace py-mypy sbml
libbeagle py-mypy-extensions sbp
libbeato py-mysql-connector-python sbt
libbinio py-mysqlclient scala
libblastrampoline py-mysqldb1 scalasca
libbsd py-nanotime scallop
libbson py-natsort scalpel
libbytesize py-nbclassic scan-for-matches
libc py-nbclient scantailor
libcanberra py-nbconvert scipoptsuite
libcap py-nbformat scons
libcap-ng py-nbmake scorec-core
libcatalyst py-nbsphinx scorep
libceed py-nc-time-axis scotch
libcerf py-ndg-httpsclient scr
libcgroup py-neo screen
libcint py-neobolt scripts
libcircle py-neotime scrnsaverproto
libconfig py-nest-asyncio scrot
libconfuse py-nestle scs
libcroco py-netaddr sctk
libctl py-netcdf4 sdl2
libcudf py-netifaces sdl2-image
libcuml py-netket sdsl-lite
libcumlprims py-networkit seacas
libcxxwrap-julia py-networkx sed
libcyaml py-neurokit2 sensei
libdaemon py-neurora sentencepiece
libdap4 py-nibabel sentieon-genomics
libdatrie py-nibetaseries seqan
libdc1394 py-nilearn seqkit
libdeflate py-nipype seqprep
libdivsufsort py-nistats seqtk
libdmx py-nitransforms serf
libdrm py-niworkflows sessreg
libdwarf py-nltk setserial
libeatmydata py-nodeenv setxkbmap
libecpint py-nose sfcgal
libedit py-nose-cov sfcio
libelf py-nose2 sga
libemos py-nosexcover sgpp
libepoxy py-notebook shadow
libestr py-ntlm-auth shapeit
libev py-ntplib shapeit4
libevdev py-num2words shapelib
libevent py-numba shared-mime-info
libevpath py-numcodecs shark
libexif py-numexpr shc
libfabric py-numexpr3 shengbte
libfastcommon py-numpy shiny-server
libfastjson py-numpydoc shiro
libffi py-nvidia-ml-py shocklibs
libffs py-nvidia-ml-py3 shoremap
libfive py-oauth2client shortbred
libflame py-oauthlib shortstack
libfontenc py-olefile showfont
libfs py-omegaconf shtools
libfuse py-onnx shuffile
libfyaml py-ont-fast5-api sickle
libgcrypt py-opcodes siesta
libgd py-opencensus sigio
libgeotiff py-opencensus-context signalp
libgff py-openidc-client signify
libgit2 py-openmc silo
libgpg-error py-openpmd-validator simde
libgpuarray py-openpyxl simgrid
libgridxc py-openslide-python simmetrix-simmodsuite
libgssglue py-opentuner simplemoc
libgtextutils py-opppy simsipm
libharu py-opt-einsum simul
libhbaapi py-or-tools simulationio
libhio py-ordered-set sina
libhugetlbfs py-ordereddict singularity
libiberty py-os-service-types singularity-legacy
libibumad py-oset singularityce
libical py-oslo-config sio
libice py-oslo-i18n sionlib
libiconv py-oslo-serialization sirius
libid3tag py-oslo-utils skilion-onedrive
libidl py-osqp skopeo
libidn2 py-overpy sl
libimagequant py-owslib slang
libimobiledevice py-pacifica-downloader slate
libinih py-pacifica-namespace sleef
libint py-pacifica-uploader slepc
libisal py-packaging slf4j
libiscsi py-pager slider
libjpeg py-palettable sloccount
libjpeg-turbo py-pamela slurm
libjson py-pandas slurm-drmaa
libjwt py-pandocfilters smalt
libkcapi py-parameterized smartdenovo
libkml py-paramiko smartmontools
libksba py-paramz smof
liblas py-parse smproxy
liblbfgs py-parsedatetime snakemake
liblbxutil py-parsl snap
liblockfile py-parso snap-berkeley
liblognorm py-partd snap-korf
liblouis py-particle snappy
libluv py-path-py snbone
libmacaroons py-pathlib sniffles
libmad py-pathlib2 snpeff
libmatheval py-pathos snphylo
libmaus2 py-pathspec snptest
libmaxminddb py-pathtools soapdenovo-trans
libmbim py-patool soapdenovo2
libmcrypt py-patsy soci
libmd py-pauvre sofa-c
libmesh py-pbr sollve
libmetalink py-peachpy sollya
libmicrodns py-pem solr
libmicrohttpd py-pep8 somatic-sniper
libmmtf-cpp py-pep8-naming sombrero
libmng py-performance sonlib
libmnl py-periodictable sortmerna
libmo-unpack py-petastorm sos
libmodbus py-petsc4py sosflow
libmonitor py-pexpect source-highlight
libmpdclient py-phonenumbers sowing
libnbc py-phonopy sox
libndp py-pickleshare sp
libnet py-picmistandard spack
libnetfilter-conntrack py-picrust spades
libnetfilter-cthelper py-picrust2 span-lite
libnetfilter-cttimeout py-pid spark
libnetfilter-queue py-pika sparse
libnetworkit py-pil sparsehash
libnfnetlink py-pillow sparskit
libnfs py-pillow-simd sparta
libnfsidmap py-pint spath
libnftnl py-pip spdlog
libnids py-pipits specfem3d-globe
libnl py-pispino spectrum-mpi
libnotify py-pkgconfig speex
libnova py-pkginfo speexdsp
libnrm py-plac spfft
libnsl py-planar spglib
libogg py-planet sph2pipe
liboldx py-plotly spherepack
libopts py-pluggy spindle
libp11 py-ply spiral
libpam py-pmw spla
libpaper py-pockets spm
libpcap py-pomegranate spot
libpciaccess py-pooch sprng
libpeas py-portalocker sqlcipher
libpfm4 py-portend sqlite
libpipeline py-poster sqlite-jdbc
libplist py-pot sqlitebrowser
libpmemobj-cpp py-pox sqoop
libpng py-poyo squashfs
libproxy py-ppft squashfuse
libpsl py-pre-commit squid
libpsml py-preshed sratoolkit
libpthread-stubs py-pretrainedmodels srilm
libpulsar py-prettytable sse2neon
libqglviewer py-profilehooks sshfs
libqrencode py-proglog sshpass
libquo py-progress ssht
librdkafka py-progressbar2 ssmtp
librelp py-projectq sspace-longread
libristra py-prometheus-client sspace-standard
librmm py-promise sst-core
librom py-prompt-toolkit sst-dumpi
librsb py-protobuf sst-elements
librsvg py-prov sst-macro
librtlsdr py-psutil sst-transports
librttopo py-psyclone stacks
libsakura py-psycopg2 staden-io-lib
libsamplerate py-ptyprocess star
libseccomp py-pudb star-ccm-plus
libsecret py-pure-eval startup-notification
libsharp py-pure-sasl stat
libshm py-py stata
libsigcpp py-py-cpuinfo static-analysis-suite
libsignal-protocol-c py-py-spy stc
libsigsegv py-py2bit steps
libsm py-py2cairo stinger
libsndfile py-py2neo storm
libsodium py-py4j stow
libspatialindex py-py6s strace
libspatialite py-pyaestro stream
libspiro py-pyamg strelka
libsplash py-pyani stress
libssh py-pyarrow stress-ng
libssh2 py-pyasn1 string-view-lite
libsvm py-pyasn1-modules stringtie
libszip py-pyautogui stripack
libtar py-pybedtools structure
libtasn1 py-pybids strumpack
libtermkey py-pybigwig su2
libthai py-pybind11 sublime-text
libtheora py-pybind11-stubgen subread
libtiff py-pybtex subversion
libtirpc py-pybtex-docutils suite-sparse
libtlx py-pycairo sumaclust
libtomlc99 py-pycares sumo
libtommath py-pycbc sundials
libtool py-pychecker superchic
libtorrent py-pycifrw superlu
libtree py-pycmd superlu-dist
libuecc py-pycocotools superlu-mt
libunistring py-pycodestyle supernova
libunwind py-pycosat sw4lite
libusb py-pycparser swap-assembler
libusbmuxd py-pycrypto swarm
libuser py-pycuda swfft
libuuid py-pycurl swftools
libuv py-pydantic swiftsim
libvdwxc py-pydap swig
libverto py-pydatalog swipl
libvips py-pydeprecate symengine
libvorbis py-pydeps symlinks
libvori py-pydicom sympol
libvpx py-pydispatcher sysbench
libvterm py-pydmd syscalc
libwebp py-pydocstyle sysfsutils
libwebsockets py-pydoe sysget
libwhich py-pydoe2 sysstat
libwindowswm py-pydot systemc
libx11 py-pydot2 systemtap
libxau py-pydotplus sz
libxaw py-pydv tabix
libxaw3d py-pyeda tajo
libxc py-pyelftools talass
libxcb py-pyem talloc
libxcomposite py-pyepsg tangram
libxcrypt py-pyface tantan
libxcursor py-pyfaidx tar
libxdamage py-pyfasta targetp
libxdmcp py-pyfftw task
libxevie py-pyfiglet taskd
libxext py-pyfits taskflow
libxfixes py-pyflakes tasmanian
libxfont py-pygdal tassel
libxfont2 py-pygdbmi tau
libxfontcache py-pygelf tauola
libxft py-pygeos tbl2asn
libxi py-pygetwindow tcl
libxinerama py-pygit2 tcl-itcl
libxkbcommon py-pygithub tcl-tcllib
libxkbfile py-pyglet tcl-tclxml
libxkbui py-pygments tclap
libxml2 py-pygments-pytest tcoffee
libxmu py-pygobject tcpdump
libxp py-pygps tcptrace
libxpm py-pygpu tcsh
libxpresent py-pygresql tdengine
libxprintapputil py-pygtk tealeaf
libxprintutil py-pygtrie teckit
libxrandr py-pyh5md tecplot
libxrender py-pyheadtail telegraf
libxres py-pyinstrument tempestremap
libxscrnsaver py-pyinstrument-cext templight
libxshmfence py-pyjnius templight-tools
libxslt py-pyjwt tengine
libxsmm py-pyke tensorflow-serving-client
libxstream py-pykml tensorpipe
libxt py-pykokkos-base termcap
libxtrap py-pykwalify tesseract
libxtst py-pyliblzma testdfsio
libxv py-pylikwid tetgen
libxvmc py-pylint tethex
libxxf86dga py-pylops texinfo
libxxf86misc py-pymatgen texlive
libxxf86vm py-pymc3 texstudio
libyaml py-pymeeus textparser
libyogrt py-pyminifier tfel
libzip py-pymol the-platinum-searcher
libzmq py-pymongo the-silver-searcher
liggghts py-pymorph thepeg
lighttpd py-pympler thornado-mini
ligra py-pymsgbox thrift
likwid py-pymumps thrust
linkphase3 py-pymysql tidy-html5
linktest py-pynacl tig
linsys-v py-pynio time
linux-headers py-pynn timedatex
linux-pam py-pynvml timemory
lis py-pyodbc tinker
listres py-pyomo tinyxml
lizard py-pyopencl tinyxml2
lksctp-tools py-pyopenssl tioga
llvm py-pypar tippecanoe
llvm-amdgpu py-pyparsing tiptop
llvm-doe py-pypeflow tix
llvm-openmp py-pypeg2 tixi
llvm-openmp-ompt py-pyperclip tk
lm-sensors py-pyperf tkrzw
lmbench py-pyprecice tldd
lmdb py-pyprof2html tmalign
lmod py-pyproj tmhmm
lndir py-pypulse tmux
log4c py-pyqi tomcat
log4cplus py-pyqt4 toml11
log4cpp py-pyqt5 tophat
log4cxx py-pyqt5-sip torque
logrotate py-pyquaternion totalview
logstash py-pyrad tpm2-tss
loki py-pyrect tppred
looptools py-pyrosar tracer
lordec py-pyrsistent tramonto
lorene py-pysam transabyss
lp-solve py-pyscaf transdecoder
lrslib py-pyscf transposome
lrzip py-pyscreeze transrate
lsf py-pyserial transset
lshw py-pyshp trapproto
lsof py-pyside tree
lsscsi py-pyside2 treelite
ltp py-pysmartdl treesub
ltr-retriever py-pysocks trf
ltrace py-pysolar triangle
lua py-pyspark trident
lua-bitlib py-pysqlite trilinos
lua-lpeg py-pystac trilinos-catalyst-ioss-adapter
lua-luafilesystem py-pysurfer trimal
lua-luajit py-pytailf trimgalore
lua-luaposix py-pytest trimmomatic
lua-mpack py-pytest-arraydiff trinity
lua-sol2 py-pytest-benchmark trinotate
lucene py-pytest-cache trnascan-se
luit py-pytest-check-links tskit
lulesh py-pytest-cov tulip
lumpy-sv py-pytest-cpp turbine
lustre py-pytest-doctestplus turbomole
lvarray py-pytest-flake8 turnserver
lvm2 py-pytest-flakes tut
lwgrp py-pytest-forked twm
lwm2 py-pytest-html tycho2
lxc py-pytest-httpbin typhon
lynx py-pytest-isort typhonio
lz4 py-pytest-metadata uchardet
lzma py-pytest-mock ucx
lzo py-pytest-mypy udunits
lzop py-pytest-openfiles ufo-core
m4 py-pytest-pep8 ufo-filters
macfuse py-pytest-qt ufs-utils
macsio py-pytest-random-order ufs-weather-model
mad-numdiff py-pytest-runner uftrace
madgraph5amc py-pytest-timeout umap
mafft py-pytest-xdist umesimd
magics py-python-benedict umoci
magma py-python-box umpire
mahout py-python-certifi-win32 unblur
makedepend py-python-daemon uncrustify
maker py-python-dateutil unibilium
mallocmc py-python-docs-theme unifdef
maloc py-python-editor unifyfs
man-db py-python-engineio unigen
manta py-python-fmask unison
mapnik py-python-fsutil units
mapserver py-python-gitlab unittest-cpp
mapsplice2 py-python-igraph universal-ctags
maq py-python-jenkins unixodbc
margo py-python-json-logger unqlite
mariadb py-python-keystoneclient unrar
mariadb-c-client py-python-ldap unuran
mark py-python-levenshtein unzip
masa py-python-logstash upcxx
mash py-python-louvain upp
masurca py-python-lzo uqtk
mathematica py-python-magic uriparser
matio py-python-mapnik usbutils
matlab py-python-meep usearch
maven py-python-memcached userspace-rcu
maverick py-python-oauth2 utf8proc
mawk py-python-picard util-linux
mbdyn py-python-rapidjson util-linux-uuid
mbedtls py-python-slugify util-macros
mc py-python-socketio uvw
mcl py-python-subunit vacuumms
mcpp py-python-swiftclient valgrind
mcutils py-python-utils vampirtrace
mdsplus py-python-xlib vapor
mdtest py-python-xmp-toolkit vardictjava
med py-python3-xlib variorum
meep py-pythonqwt varnish-cache
mefit py-pythonsollya varscan
megadock py-pythran vasp
megahit py-pytimeparse vbfnlo
melissa py-pytools vc
memaxes py-pytorch-gradual-warmup-lr vcftools
memcached py-pytorch-lightning vcsh
meme py-pytorch-sphinx-theme vdt
memkind py-pytweening veccore
memsurfer py-pytz vecgeom
memtester py-pyudev veclibfort
meraculous py-pyugrid vegas2
mercurial py-pyusb veloc
mercury py-pyutilib velvet
mesa py-pyvcf velvetoptimiser
mesa-demos py-pyvista verilator
mesa-glu py-pyvistaqt verrou
mesa18 py-pywavelets vesta
meshkit py-pywcs vgm
meshtool py-pyyaml videoproto
meson py-pyzmq viennarna
mesquite py-qsymm viewres
metabat py-qtawesome vifi
metall py-qtconsole vigra
metaphysicl py-qtpy vim
metis py-quantities virtest
metkit py-quast virtualgl
mfem py-queryablelist virtuoso
mg py-questionary visit
mgis py-radiant-mlhub visit-cgns
microbiomeutil py-radical-entk visit-ffp
migraphx py-radical-gtod visit-mfem
migrate py-radical-pilot visit-silo
mii py-radical-saga visit-unv
minc-toolkit py-radical-utils vizglow
minced py-ranger-fm vmatch
mindthegap py-rarfile vmc
miniaero py-rasterio vmd
miniamr py-ratelim volk
miniapp-ascent py-raven voropp
miniasm py-ray votca-csg
miniconda2 py-rbtools votca-csg-tutorials
miniconda3 py-rdflib votca-csgapps
minife py-readme-renderer votca-ctp
miniforge3 py-recommonmark votca-tools
minigan py-redis votca-xtp
minighost py-regex vpfft
minigmg py-reindent vpic
minimap2 py-reportlab vsearch
minimd py-repoze-lru vsftpd
minio py-reproject vt
miniqmc py-requests vtable-dumper
minisign py-requests-ftp vtk
minismac2d py-requests-futures vtk-h
minitri py-requests-mock vtk-m
minivite py-requests-ntlm vvtest
minixyce py-requests-oauthlib w3emc
minizip py-requests-toolbelt w3m
minuit py-requests-unixsocket w3nco
miopen-hip py-resampy wannier90
miopen-opencl py-responses warpx
miopengemm py-restview watch
mira py-resultsfile wayland
miranda py-retry-decorator wayland-protocols
mirdeep2 py-retrying wcs
mitofates py-rfc3986 wcslib
mitos py-rich webbench
mivisionx py-rios weechat
mixcr py-rioxarray weighttp
mkfontdir py-rise wget
mkfontscale py-rmm wgrib2
mlhka py-rnacocktail wgsim
mlocate py-rnc2rng which
mlperf-deepcam py-robotframework whizard
mmg py-rope windowswmproto
mmv py-rosdep wireshark
moab py-rosdistro wonton
mochi-margo py-rosinstall wordnet
model-traits py-rosinstall-generator workrave
modeltest-ng py-rospkg wps
modern-wheel py-rply wrf
modylas py-rpy2 wrf-io
mofem-cephas py-rq wrk
mofem-fracture-module py-rsa wsmancli
mofem-minimal-surface-equation py-rsatoolbox wt
mofem-users-modules py-rseqc wtdbg2
mokutil py-rtree wxparaver
molcas py-ruamel-ordereddict wxpropgrid
molden py-ruamel-yaml wxwidgets
mongo-c-driver py-ruamel-yaml-clib x11perf
mongo-cxx-driver py-rx xabclib
mongodb-async-driver py-s3cmd xapian-core
mono py-s3fs xauth
montage py-s3transfer xbacklight
moosefs py-sacremoses xbiff
moreutils py-saga-python xbitmaps
mosh py-salib xbraid
mothur py-sanic xcalc
motif py-scandir xcb-demo
motioncor2 py-scientificpython xcb-proto
mount-point-attributes py-scikit-build xcb-util
mozjs py-scikit-fmm xcb-util-cursor
mpark-variant py-scikit-image xcb-util-errors
mpas-model py-scikit-learn xcb-util-image
mpc py-scikit-optimize xcb-util-keysyms
mpdecimal py-scipy xcb-util-renderutil
mpe2 py-scooby xcb-util-wm
mpest py-scoop xcb-util-xrm
mpfi py-scp xcfun
mpfr py-scs xclip
mpi-bash py-seaborn xclipboard
mpibind py-secretstorage xclock
mpich py-segmentation-models-pytorch xcmiscproto
mpifileutils py-selenium xcmsdb
mpilander py-semantic-version xcompmgr
mpileaks py-semver xconsole
mpip py-send2trash xcursor-themes
mpir py-sentencepiece xcursorgen
mpitrampoline py-sentry-sdk xdbedizzy
mpix-launch-swift py-seqeval xdelta
mpl py-seriate xditview
mpt py-setproctitle xdm
mptensor py-setuptools xdmf3
mrbayes py-setuptools-git xdotool
mrbench py-setuptools-rust xdpyinfo
mrchem py-setuptools-scm xdriinfo
mrcpp py-setuptools-scm-git-archive xedit
mrnet py-sfepy xerces-c
mrtrix3 py-sgp4 xeus
mscgen py-sh xev
msgpack-c py-shapely xextproto
mshadow py-shiboken xeyes
msmc py-shiboken2 xf86bigfontproto
msmc2 py-shortuuid xf86dga
mstk py-shroud xf86dgaproto
mt-metis py-shtab xf86driproto
multitail py-sierrapy xf86miscproto
multitime py-simplegeneric xf86rushproto
multiverso py-simplejson xf86vidmodeproto
mumax py-simplekml xfd
mummer py-singledispatch xfindproxy
mummer4 py-sip xfontsel
mumps py-six xforms
munge py-slepc4py xfs
muparser py-slurm-pipeline xfsdump
muscle py-smart-open xfsinfo
muse py-smmap xfsprogs
musl py-snappy xfwp
muster py-sncosmo xgamma
mutationpp py-sniffio xgboost
mvapich2 py-snowballstemmer xgc
mvapich2-gdr py-snuggs xhmm
mvapich2x py-sobol-seq xhost
mxm py-sonlib xineramaproto
mxml py-sortedcollections xinit
mxnet py-sortedcontainers xinput
mysql py-soundfile xios
mysqlpp py-soupsieve xkbcomp
n2p2 py-spacy xkbdata
nacos py-spacy-models-en-core-web-sm xkbevd
nag py-spacy-models-en-vectors-web-lg xkbprint
nalu py-sparse xkbutils
nalu-wind py-spatialist xkeyboard-config
namd py-spatialite xkill
nano py-spdlog xlc
nanoflann py-spectra xlf
nanomsg py-speech-recognition xload
nanopb py-spefile xlogo
nasm py-spgl1 xlsatoms
nauty py-spglib xlsclients
nbdkit py-sphinx xlsfonts
ncbi-magicblast py-sphinx-autodoc-typehints xmag
ncbi-rmblastn py-sphinx-bootstrap-theme xman
ncbi-toolkit py-sphinx-copybutton xmessage
nccl py-sphinx-gallery xmh
nccl-tests py-sphinx-rtd-theme xmlf90
nccmp py-sphinxautomodapi xmlrpc-c
ncdu py-sphinxcontrib-applehelp xmlto
ncftp py-sphinxcontrib-bibtex xmodmap
ncio py-sphinxcontrib-devhelp xmore
ncl py-sphinxcontrib-htmlhelp xnnpack
nco py-sphinxcontrib-issuetracker xorg-cf-files
ncompress py-sphinxcontrib-jsmath xorg-docs
ncurses py-sphinxcontrib-mermaid xorg-gtest
ncview py-sphinxcontrib-napoleon xorg-server
ndiff py-sphinxcontrib-programoutput xorg-sgml-doctools
neartree py-sphinxcontrib-qthelp xphelloworld
nek5000 py-sphinxcontrib-serializinghtml xplor-nih
nekbone py-sphinxcontrib-trio xplsprinters
nekcem py-sphinxcontrib-websupport xpmem
nekrs py-sphobjinv xpr
nektar py-spyder xprehashprinterlist
nektools py-spykeutils xprop
nemsio py-sqlalchemy xproperty
nemsiogfs py-sqlalchemy-stubs xproto
neo4j py-sqlalchemy-utils xproxymanagementprotocol
neovim py-sqlparse xqilla
nest py-srsly xrandr
net-snmp py-sshtunnel xrdb
netcdf-c py-statsmodels xrefresh
netcdf-cxx py-stdlib-list xrootd
netcdf-cxx4 py-stestr xrx
netcdf-fortran py-stevedore xsbench
netdata py-stopit xscope
netgauge py-storm xsd
netgen py-stratify xsdk
netkit-ftp py-stsci-distutils xsdk-examples
netlib-lapack py-submitit xset
netlib-scalapack py-subprocess32 xsetmode
netlib-xblas py-subrosa xsetpointer
netpbm py-svgpathtools xsetroot
netperf py-svgutils xsimd
nettle py-svgwrite xsm
neuron py-symengine xstdcmap
newt py-symfit xtensor
nextflow py-sympy xtensor-python
nfft py-syned xterm
nfs-ganesha py-systemd-python xtl
nfs-utils py-tables xtrans
nghttp2 py-tabulate xtrap
nginx py-tap-py xts
ngmerge py-tatsu xvidtune
ngmlr py-tblib xvinfo
ngspice py-templateflow xwd
nicstat py-tempora xwidgets
nim py-tenacity xwininfo
ninja py-tensorboard xwud
ninja-fortran py-tensorboard-plugin-wit xxd-standalone
nix py-tensorboardx xxhash
njet py-tensorflow xyce
nlcglib py-tensorflow-estimator xz
nlohmann-json py-tensorflow-hub yajl
nlohmann-json-schema-validator py-tensorflow-probability yambo
nlopt py-termcolor yaml-cpp
nmap py-terminado yara
nn-c py-terminaltables yarn
nnpack py-testfixtures yasm
nnvm py-testinfra ycsb
node-js py-testpath yoda
notmuch py-testrepository yorick
npb py-testresources z-checker
npm py-testscenarios z3
npth py-testtools zabbix
nrm py-tetoolkit zfp
ns-3-dev py-text-unidecode zfs
nseg py-textblob zig
nsimd py-texttable zip
nspr py-tfdlpack zipkin
nss py-theano zlib
ntirpc py-thinc zlib-ng
ntpoly py-thirdorder zoltan
numactl py-threadpoolctl zookeeper
numamma py-tifffile zookeeper-benchmark
numap py-timm zsh
numdiff py-tinyarray zstd
nut py-tokenizers zstr
nvdimmsim py-toml zziplib
nvhpc py-tomli None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Build Dependencies:
gnuconfig
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 14.1.0, 14.0.0, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-pytest, root
Link Dependencies:
cuda, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-pytest, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.1, 0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
gnuconfig, bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
gnuconfig, automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gnuconfig, gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Build Dependencies:
gnuconfig
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
gnuconfig
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.7.0, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, boost
Link Dependencies:
cuda, cmake, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alpgen

Homepage:
Spack package:
Versions:
2.1.4
Build Dependencies:
cmake
Description:
A collection of codes for the generation of multi-parton processes in hadronic collisions.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, 1.0.9, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Build Dependencies:
gnuconfig
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amdblis

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
gnuconfig, mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
gnuconfig, blas, python
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
gnuconfig, numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
cuda, cmake, mpi, amrex, hypre, netcdf-c, masa, openfast
Link Dependencies:
cuda, mpi, amrex, hypre, netcdf-c, masa, openfast
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 21.11, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand, rocprim
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.935, 0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
gnuconfig, python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.3.5, 2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : https://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, mesa18, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
mesa18, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.3, 0.0.2, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, zlib, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Link Dependencies:
zlib, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
gnuconfig, swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Build Dependencies:
gnuconfig
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.5.2, 0.5
Build Dependencies:
cuda, cmake, nlohmann-json, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, nlohmann-json, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy, py-pybind11
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.1, 1.0, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Build Dependencies:
gnuconfig
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Build Dependencies:
gnuconfig
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
21.0
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
21.1, 21.0.2, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, fides, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, fides, dray
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
Build Dependencies:
gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Build Dependencies:
gnuconfig
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.0.1, 4.0.1
Build Dependencies:
cmake, zlib, boost
Link Dependencies:
zlib, boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, rsync
Link Dependencies:
rsync, comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Build Dependencies:
gnuconfig
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59
Build Dependencies:
gnuconfig, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Build Dependencies:
gnuconfig
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
gnuconfig, pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
gnuconfig, autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.17.10, 2.16.1
Build Dependencies:
gnuconfig, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree, zlib
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, kvtree, dtcmp, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, kvtree, dtcmp, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.1.0, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
gnuconfig, glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

bacio

Homepage:
Spack package:
Versions:
2.5.0, 2.4.1
Build Dependencies:
cmake
Description:
The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gnuconfig, gmp, llvm, libyaml
Link Dependencies:
gmp, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.4, 4.3
Build Dependencies:
gnuconfig, ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
gnuconfig, automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
gnuconfig, ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gnuconfig, gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.6, 8.0.0, 7.6.0, 7.4.4
Build Dependencies:
gnuconfig, libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Build Dependencies:
gnuconfig
Description:
Oracle Berkeley DB

berkeleygw

Homepage:
Spack package:
Versions:
3.0.1, 3.0, 2.1
Build Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py, fftw, amdfftw, openblas, amdblis
Link Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, fftw, amdfftw, openblas, amdblis
Run Dependencies:
python, py-numpy, py-setuptools, py-h5py
Test Dependencies:
perl
Description:
BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
gnuconfig, flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
gnuconfig, pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
gnuconfig, zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
gnuconfig, boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
gnuconfig, diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
gnuconfig, glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blaspp

Homepage:
Spack package:
Versions:
master, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
gnuconfig, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
gnuconfig, python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Build Dependencies:
gnuconfig
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gnuconfig, autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, zlib
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Build Dependencies:
gnuconfig
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Build Dependencies:
gnuconfig
Description:
A Binary Decision Diagram library.

bufr

Homepage:
Spack package:
Versions:
11.5.0
Build Dependencies:
cmake
Description:
The NOAA bufr library contains subroutines, functions and other utilities that can be used to read (decode) and write (encode) data in BUFR, which is a WMO standard format for the exchange of meteorological data. This is part of the NCEPLIBS project.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig, libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
20210808
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
gnuconfig, tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Build Dependencies:
gnuconfig
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

c3d

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
cmake, itk
Link Dependencies:
itk
Description:
Image processing and conversion tool based on ITK.

ca-certificates-mozilla

Homepage:
Spack package:
Versions:
2021-07-05, 2021-05-25, 2021-04-13, 2021-01-19, 2020-12-08, 2020-10-14, 2020-07-22, 2020-06-24, 2020-01-01, 2019-11-27, 2019-10-16, 2019-08-28
Description:
The Mozilla CA certificate store in PEM format

cabana

Homepage:
Spack package:
Versions:
master, 0.4.0, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, kokkos-legacy, kokkos, arborx, heffte, hypre-cmake, mpi
Link Dependencies:
kokkos-legacy, kokkos, arborx, heffte, hypre-cmake, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cuda, cmake, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
cuda, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.4, 1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
gnuconfig, libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
gnuconfig, cairo, libsigcpp, pkgconfig
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cuda, cmake, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow, python
Link Dependencies:
cuda, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
main, 0.3.0, 0.2.3, 0.2.2, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, cub, blt
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cub, blt
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.5.1, 2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.8.0, 0.7.0
Build Dependencies:
gnuconfig
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai, cub
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0-alpha2, 4.0-alpha1, 3.11.6, 3.11.5
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks. For versions 5.7 and greater use the paraview package.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.0-preview3, 2.13.7, 2.13.6, 2.13.5, 2.13.4, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
gnuconfig, coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cbflib

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
m4
Description:
CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
rpcsvc-proto, libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elfutils, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains collector and runtime contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package:
Versions:
4.4.2, 4.4.1, 4.4, 4.3, 4.2.1, 4.2, 4.1, 4.0, 3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
cmake, zstd, gperf, hiredis, libxslt, zlib
Link Dependencies:
zstd, gperf, hiredis, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.6, 2.5, 2.4
Build Dependencies:
gnuconfig, cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccls

Homepage:
Spack package:
Versions:
0.20201025
Build Dependencies:
cmake, llvm, rapidjson
Link Dependencies:
llvm, rapidjson
Description:
C/C++ language server

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.2.10, 7.2.4, 7.2.3, 7.2.2, 7.2.1, 7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
gnuconfig, openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94m, 0.94h
Build Dependencies:
gnuconfig, gmp
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Build Dependencies:
gnuconfig
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
1.9.10, 1.9.9, 1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
gnuconfig, pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
4.0.0, 3.0.0, 2.0.0, 1.0.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, libceed, occa, nekrs, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, libceed, occa, nekrs, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
2.0.0, 1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
4.0.0, 3.49, 3.48, 3.47, 3.45, 3.42, 3.41, 3.37
Build Dependencies:
gnuconfig, curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
0.7.0
Build Dependencies:
gnuconfig, ncurses, readline, flex, bison, texinfo
Link Dependencies:
ncurses, readline
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, pkgconfig, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cget

Homepage:
Spack package:
Versions:
0.1.9
Build Dependencies:
python, py-setuptools, py-six, py-click, py-subprocess32
Run Dependencies:
python, py-six, py-click, py-subprocess32
Description:
Cmake package retrieval.

cgl

Homepage:
Spack package:
Versions:
0.60.3
Build Dependencies:
gnuconfig, coinutils, osi, clp
Link Dependencies:
coinutils, osi, clp
Description:
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
gnuconfig, mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.2.0, 4.1.2, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chai

Homepage:
Spack package:
Versions:
develop, main, 2.4.0, 2.3.0, 2.2.2, 2.2.1, 2.2.0, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, umpire, raja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, umpire, raja
Description:
Copy-hiding array interface for data migration between memory spaces

changa

Homepage:
Spack package:
Versions:
master, 3.4
Build Dependencies:
gnuconfig, charmpp
Link Dependencies:
charmpp
Description:
ChaNGa (Charm N-body GrAvity solver) is a code to perform collisionless N-body simulations. It can perform cosmological simulations with periodic boundary conditions in comoving coordinates or simulations of isolated stellar systems. It also can include hydrodynamics using the Smooth Particle Hydrodynamics (SPH) technique. It uses a Barnes-Hut tree to calculate gravity, with hexadecapole expansion of nodes and Ewald summation for periodic forces. Timestepping is done with a leapfrog integrator with individual timesteps for each particle.

channelflow

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, eigen, fftw, mpi, hdf5, netcdf-c, boost
Link Dependencies:
eigen, fftw, mpi, hdf5, netcdf-c, boost
Description:
Channelflow is a software system for numerical analysis of the incompressible fluid flow in channel geometries, written in C++.

chapel

Homepage:
Spack package:
Versions:
1.24.1, 1.24.0, 1.23.0, 1.22.1, 1.22.0, 1.21.0, 1.20.0, 1.19.0, 1.18.0
Build Dependencies:
gnuconfig
Description:
Chapel is a modern programming language that is parallel, productive, portable, scalable and open-source.

chaplin

Homepage:
Spack package:
Versions:
1.2
Build Dependencies:
gnuconfig
Description:
The FORTRAN library CHAPLIN enables you to numerically evaluate Harmonic polylogarithms up to weight 4 for any complex argument.

charliecloud

Homepage:
Spack package:
Versions:
master, 0.25, 0.24, 0.23, 0.22, 0.21, 0.19, 0.18
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, rsync, py-sphinx, py-sphinx-rtd-theme
Run Dependencies:
python, py-lark-parser, py-requests
Test Dependencies:
bats
Description:
Lightweight user-defined software stacks for HPC.

charmpp

Homepage:
Spack package:
Versions:
main, 7.0.0, 6.10.2, 6.10.1, 6.10.0, 6.9.0, 6.8.2, 6.8.1, 6.8.0, 6.7.1, 6.7.0, 6.6.1, 6.6.0, 6.5.1
Build Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Link Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Description:
Charm++ is a parallel programming framework in C++ supported by an adaptive runtime system, which enhances user productivity and allows programs to run portably from small multicore computers (your laptop) to the largest supercomputers.

chatterbug

Homepage:
Spack package:
Versions:
develop, 1.0
Build Dependencies:
mpi, scorep
Link Dependencies:
mpi, scorep
Description:
A suite of communication-intensive proxy applications that mimic commonly found communication patterns in HPC codes. These codes can be used as synthetic codes for benchmarking, or for trace generation using Score-P / OTF2.

check

Homepage:
Spack package:
Versions:
0.12.0, 0.11.0, 0.10.0
Build Dependencies:
gnuconfig
Description:
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

chgcentre

Homepage:
Spack package:
Versions:
1.6
Build Dependencies:
cmake, casacore, gsl
Link Dependencies:
casacore, gsl
Description:
The chgcentre tool can be used to change the phase centre of a measurement set.

chill

Homepage:
Spack package:
Versions:
master, 0.3
Build Dependencies:
gnuconfig, boost, rose, autoconf, automake, libtool, m4, iegenlib, bison, flex, python, isl, gmp
Link Dependencies:
python
Run Dependencies:
rose, iegenlib
Description:
A polyheadral compiler for autotuning

chlorop

Homepage:
Spack package:
Versions:
1.1
Run Dependencies:
awk
Description:
Chlorop predicts the presence of chloroplast transit peptides in protein sequences and the location of potential cTP cleavage sites. You will need to obtain the tarball by visiting the URL and completing the form. You can then either run spack install with the tarball in the directory, or add it to a mirror. You will need to set the CHLOROTMP environment variable to the full path of the directory you want chlorop to use as a temporary directory.

chombo

Homepage:
Spack package:
Versions:
develop, 3.2
Build Dependencies:
blas, lapack, gmake, tcsh, mpi, hdf5
Link Dependencies:
blas, lapack, mpi, hdf5
Description:
The Chombo package provides a set of tools for implementing finite difference and finite-volume methods for the solution of partial differential equations on block-structured adaptively refined logically rectangular (i.e. Cartesian) grids.

chrony

Homepage:
Spack package:
Versions:
3.5.1, 3.5, 3.4, 3.3
Build Dependencies:
gnuconfig, ruby-asciidoctor, bison
Link Dependencies:
ruby-asciidoctor
Description:
chrony is a versatile implementation of the Network Time Protocol (NTP). It can synchronise the system clock with NTP servers, reference clocks(e.g. GPS receiver), and manual input using wristwatch and keyboard.

chrpath

Homepage:
Spack package:
Versions:
0.16
Build Dependencies:
gnuconfig
Description:
chrpath: Modifies the dynamic library load path (rpath and runpath) of compiled programs and libraries.

cinch

Homepage:
Spack package:
Versions:
master, 1.0
Description:
Cinch is a set of utilities and configuration options designed to make cmake builds easy to use and manage.

cistem

Homepage:
Spack package:
Versions:
1.0.0-beta
Build Dependencies:
gnuconfig, wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

citcoms

Homepage:
Spack package:
Versions:
master, 3.3.1, 3.2.0
Build Dependencies:
gnuconfig, mpi, zlib, automake, autoconf, libtool, m4, hc, cuda, hdf5
Link Dependencies:
mpi, zlib, hc, cuda, hdf5
Run Dependencies:
python
Description:
CitcomS is a finite element code designed to solve compressible thermochemical convection problems relevant to Earth's mantle.

cityhash

Homepage:
Spack package:
Versions:
master, 2013-07-31
Build Dependencies:
gnuconfig
Description:
CityHash, a family of hash functions for strings.

ck

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
CK calculates class-level and metric-level code metrics in Java projects by means of static analysis (i.e. no need for compiled code).

clamav

Homepage:
Spack package:
Versions:
0.101.2
Build Dependencies:
gnuconfig, pkgconfig, json-c, openssl, pcre, yara, zlib, bzip2
Link Dependencies:
json-c, openssl, pcre, yara, zlib, bzip2, curl
Description:
Open source antivirus engine for detecting trojans, viruses, malware & other malicious threats.

clamr

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, mpi, mpe
Link Dependencies:
mpi, mpe
Description:
The CLAMR code is a cell-based adaptive mesh refinement (AMR) mini-app developed as a testbed for hybrid algorithm development using MPI and OpenCL GPU code.

clapack

Homepage:
Spack package:
Versions:
3.2.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CLAPACK is a f2c'ed version of LAPACK. The CLAPACK library was built using a Fortran to C conversion utility called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain C code, and then modified to improve readability. CLAPACK's goal is to provide LAPACK for someone who does not have access to a Fortran compiler.

clara

Homepage:
Spack package:
Versions:
1.1.5, 1.1.4, 1.1.3, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
A simple to use, composable, command line parser for C++ 11 and beyond.

claw

Homepage:
Spack package:
Versions:
2.0.3, 2.0.2, 2.0.1, 2.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0
Build Dependencies:
cmake, ant, bison, flex, java, libxml2
Link Dependencies:
java, libxml2
Description:
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran. From a single source code, it generates architecture specific code decorated with OpenMP or OpenACC

cleaveland4

Homepage:
Spack package:
Versions:
4.4
Build Dependencies:
perl, perl-math-cdf, bowtie, viennarna, r, samtools
Link Dependencies:
bowtie, viennarna, samtools
Run Dependencies:
perl, perl-math-cdf, r
Description:
CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

cleverleaf

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, samrai, hdf5, boost
Link Dependencies:
samrai, hdf5, boost
Description:
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National Laboratory. The primary goal of CleverLeaf is to evaluate the application of AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.

clfft

Homepage:
Spack package:
Versions:
2.12.2
Build Dependencies:
cmake, opencl, boost
Link Dependencies:
opencl, boost
Description:
a software library containing FFT functions written in OpenCL

clhep

Homepage:
Spack package:
Versions:
2.4.4.0, 2.4.1.3, 2.4.1.2, 2.4.1.0, 2.4.0.4, 2.4.0.2, 2.4.0.1, 2.4.0.0, 2.3.4.6, 2.3.4.5, 2.3.4.4, 2.3.4.3, 2.3.4.2, 2.3.3.2, 2.3.3.1, 2.3.3.0, 2.3.2.2, 2.3.1.1, 2.3.1.0, 2.3.0.0, 2.2.0.8, 2.2.0.5, 2.2.0.4
Build Dependencies:
cmake
Description:
CLHEP is a C++ Class Library for High Energy Physics.

cli11

Homepage:
Spack package:
Versions:
2.1.1, 2.1.0, 2.0.0, 1.9.1
Build Dependencies:
cmake
Description:
CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

clinfo

Homepage:
Spack package:
Versions:
2.2.18.04.06
Build Dependencies:
opencl
Link Dependencies:
opencl
Description:
Print all known information about all available OpenCL platforms and devices in the system.

clingo

Homepage:
Spack package:
Versions:
master, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python, py-cffi
Link Dependencies:
python
Run Dependencies:
python, py-cffi
Description:
Clingo: A grounder and solver for logic programs Clingo is part of the