Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 5053 mainline packages:

3proxy netcdf-c py-typed-ast
abduco netcdf-cxx py-typesentry
abi-compliance-checker netcdf-cxx4 py-typing
abi-dumper netcdf-fortran py-typing-extensions
abinit netdata py-tzlocal
abseil-cpp netgauge py-ujson
abyss netgen py-umalqurra
accfft netkit-ftp py-umi-tools
acct netlib-lapack py-uncertainties
accumulo netlib-scalapack py-unicycler
ace netlib-xblas py-unidecode
ack netperf py-unittest2
acl nettle py-unittest2py3k
acpica-tools neuron py-update-checker
acpid newt py-uproot4
activeharmony nextflow py-uritemplate
activemq nfft py-urllib3
acts nfs-ganesha py-urwid
addrwatch nfs-utils py-us
adept-utils nghttp2 py-usgs
adf nginx py-utils
adiak ngmerge py-uvloop
adios ngmlr py-uvw
adios2 nicstat py-uwsgi
adlbx nim py-vcf-kit
admixtools ninja py-vcversioner
adol-c ninja-fortran py-vermin
advancecomp nix py-versioneer
aegean njet py-vine
aeskeyfind nlcglib py-virtualenv
aespipe nlohmann-json py-virtualenv-clone
agrep nlohmann-json-schema-validator py-virtualenvwrapper
aida nlopt py-visdom
akantu nmap py-voluptuous
alan nn-c py-vsc-base
albany nnvm py-vsc-install
albert node-js py-vsts
alglib notmuch py-vsts-cd-manager
allpaths-lg npb py-walinuxagent
alluxio npm py-wand
alps npth py-wandb
alquimia nrm py-warlock
alsa-lib ns-3-dev py-wasabi
aluminum nseg py-watchdog
ambari nsimd py-wcsaxes
amber nspr py-wcwidth
amdblis ntirpc py-weave
amdfftw ntpoly py-webencodings
amdlibflame numactl py-webkit-server
amdscalapack numamma py-weblogo
amg numap py-websocket-client
amg2013 numdiff py-websockets
amgx nut py-werkzeug
aml nvdimmsim py-whatshap
amp nvhpc py-wheel
ampliconnoise nvptx-tools py-whichcraft
amrex nwchem py-widgetsnbextension
amrvis nyancat py-workload-automation
anaconda2 ocaml py-wradlib
anaconda3 occa py-wrapt
andi oce py-wub
angsd oci-systemd-hook py-wxmplot
ant ocl-icd py-wxpython
antimony oclgrind py-xarray
antlr oclint py-xattr
ants oclock py-xdot
aocc octave py-xenv
aoflagger octave-optim py-xlrd
aom octave-splines py-xlsxwriter
aomp octave-struct py-xlwt
apachetop octopus py-xmlrunner
apcomp of-catalyst py-xmltodict
ape of-precice py-xopen
aperture-photometry omega-h py-xpyb
apex ompss py-xvfbwrapper
apple-libunwind ompt-openmp py-yahmm
applewmproto onednn py-yajl
appres oniguruma py-yamlreader
apr ont-albacore py-yapf
apr-util opa-psm2 py-yarl
aragorn opam py-yolk3k
arbor opari2 py-youtube-dl
arborx open-iscsi py-yt
archer open-isns py-ytopt
argobots openbabel py-zarr
argon2 openblas py-zc-buildout
argp-standalone opencascade py-zc-lockfile
argtable opencl-c-headers py-zict
aria2 opencl-clhpp py-zipp
arm-forge opencl-headers py-zope-event
armadillo opencoarrays py-zope-interface
arpack-ng opencv py-zxcvbn
arrayfire opendx pythia6
arrow openexr pythia8
asagi openfast python
ascent openfdtd q-e-sirius
asciidoc openfoam qbank
asciidoc-py3 openfoam-org qbox
asdcplib openfst qca
asdf-cxx opengl qcachegrind
aspa openglu qd
aspcud openimageio qemu
aspect openipmi qgis
aspell openjdk qgraf
aspell6-de openjpeg qhull
aspell6-en openkim-models qjson
aspell6-es openldap qmcpack
aspera-cli openloops qmd-progress
assimp openmc qnnpack
astra openmm qorts
astral openmolcas qperf
astyle openmpi qrupdate
at-spi2-atk openmx qscintilla
at-spi2-core opennurbs qt
atf openpa qt-creator
athena openpbs qtgraph
atk openpmd-api qthreads
atlas openresty qtkeychain
atmi openscenegraph quantum-espresso
atom-dft openslide quartz
atompaw openslp quicksilver
atop openspeedshop quinoa
attr openspeedshop-utils quota
audacious openssh qwt
audacity openssl qwtpolar
audit-userspace openstf r
augustus opensubdiv r-a4
authd opentsdb r-a4base
authselect openwsman r-a4classif
autoconf opium r-a4core
autoconf-archive optional-lite r-a4preproc
autodock-gpu optipng r-a4reporting
autodock-vina opus r-abadata
autofact orbit2 r-abaenrichment
autogen orc r-abind
automaded orca r-absseq
automake orfm r-acde
avizo orientdb r-acepack
aws-parallelcluster orthofiller r-acgh
awscli orthofinder r-acme
axel orthomcl r-ada
axl osi r-adabag
axom osmctools r-ade4
babelflow osqp r-adegenet
babeltrace osu-micro-benchmarks r-adegraphics
backupninja otf r-adephylo
bam-readcount otf2 r-adespatial
bamaddrg p11-kit r-adgoftest
bamdst p3dfft3 r-adsplit
bamtools p4est r-aer
bamutil p7zip r-affxparser
bannergrab pacbio-daligner r-affy
barrnap pacbio-damasker r-affycomp
bart pacbio-dazz-db r-affycompatible
bash pacbio-dextractor r-affycontam
bash-completion packmol r-affycoretools
bashtop pacvim r-affydata
bat pagit r-affyexpress
batctl pagmo r-affyilm
bats pal r-affyio
bazel paml r-affypdnn
bbcp panda r-affyplm
bbmap pandaseq r-affyqcreport
bc pandoc r-affyrnadegradation
bcache pango r-agdex
bcftools pangomm r-agilp
bcl2fastq2 papi r-agimicrorna
bdftopcf papyrus r-aims
bdii paradiseo r-aldex2
bdw-gc parallel r-allelicimbalance
beagle parallel-netcdf r-alpine
beakerlib parallelmergetree r-als
bear paraver r-alsace
beast-tracer paraview r-altcdfenvs
beast1 parmetis r-amap
beast2 parmgridgen r-ampliqueso
bedops parquet-cpp r-analysispageserver
bedtools2 parquet-format r-anaquin
beforelight parsimonator r-aneufinder
benchmark parsplice r-aneufinderdata
berkeley-db partitionfinder r-animation
bertini pasta r-annaffy
bgpdump patch r-annotate
bib2xhtml patchelf r-annotationdbi
bigreqsproto patchutils r-annotationfilter
bind9 pathfinder r-annotationforge
binutils pax-utils r-annotationhub
bioawk pbbam r-aod
biobloom pbmpi r-ape
biopieces pbsuite r-argparse
bird pciutils r-aroma-light
bismark pcma r-askpass
bison pcre r-assertthat
bitlbee pcre2 r-backports
bitmap pdf2svg r-bamsignals
bitsery pdftk r-base64
blaspp pdsh r-base64enc
blasr pdt r-bayesm
blasr-libcpp pegtl r-bbmisc
blast-legacy pennant r-beachmat
blast-plus percept r-beanplot
blast2go percona-server r-beeswarm
blat perfstubs r-bfast
blaze perl r-bfastspatial
blis perl-acme-damn r-bglr
bliss perl-algorithm-diff r-bh
blitz perl-alien-build r-biasedurn
blktrace perl-alien-libxml2 r-bibtex
blogbench perl-app-cmd r-bigalgebra
blt perl-array-utils r-bigmemory
bmake perl-b-hooks-endofscope r-bigmemory-sri
bmi perl-bio-searchio-hmmer r-bindr
bml perl-bioperl r-bindrcpp
bohrium perl-bit-vector r-bio3d
boinc-client perl-cairo r-biobase
bolt perl-capture-tiny r-biocfilecache
bonniepp perl-carp-clan r-biocgenerics
bookleaf-cpp perl-cgi r-biocinstaller
boost perl-class-data-inheritable r-biocmanager
boostmplcartesianproduct perl-class-inspector r-biocneighbors
botan perl-class-load r-biocparallel
bowtie perl-class-load-xs r-biocsingular
bowtie2 perl-clone r-biocstyle
boxlib perl-clone-choose r-biom-utils
bpp-core perl-compress-raw-bzip2 r-biomart
bpp-phyl perl-compress-raw-zlib r-biomartr
bpp-phyl-omics perl-config-general r-biomformat
bpp-seq perl-contextual-return r-biostrings
bpp-seq-omics perl-cpan-meta-check r-biovizbase
bpp-suite perl-data-dumper r-bit
bracken perl-data-optlist r-bit64
braker perl-data-stag r-bitops
branson perl-date-manip r-blob
breakdancer perl-db-file r-blockmodeling
bref3 perl-dbd-mysql r-bmp
breseq perl-dbd-pg r-bookdown
bridger perl-dbd-sqlite r-boot
brigand perl-dbi r-boruta
brltty perl-devel-cycle r-brew
brotli perl-devel-globaldestruction r-broom
brpc perl-devel-overloadinfo r-bsgenome
bsseeker2 perl-devel-stacktrace r-bsgenome-hsapiens-ucsc-hg19
bubblewrap perl-devel-symdump r-bsseq
bucky perl-digest-md5 r-bumphunter
buddy perl-dist-checkconflicts r-c50
bumpversion perl-encode-locale r-cairo
busco perl-error r-callr
busybox perl-eval-closure r-car
butter perl-exception-class r-caracas
butterflypack perl-exporter-tiny r-cardata
bwa perl-extutils-config r-caret
bwtool perl-extutils-depends r-caroline
byacc perl-extutils-helpers r-category
byobu perl-extutils-installpaths r-catools
byte-unixbench perl-extutils-makemaker r-cdcfluview
byteman perl-extutils-pkgconfig r-cellranger
bzip2 perl-ffi-checklib r-checkmate
c perl-file-chdir r-checkpoint
c-ares perl-file-copy-recursive r-chemometrics
c-blosc perl-file-homedir r-chron
c-blosc2 perl-file-listing r-circlize
c-lime perl-file-pushd r-class
cabana perl-file-sharedir-install r-classint
cachefilesd perl-file-slurp r-cli
caffe perl-file-slurp-tiny r-clipr
cairo perl-file-slurper r-clisymbols
cairomm perl-file-which r-clue
caliper perl-font-ttf r-cluster
callpath perl-forks r-clustergeneration
camellia perl-gd r-clusterprofiler
camp perl-gdgraph r-cner
camx perl-gdgraph-histogram r-coda
canal perl-gdtextutil r-codetools
candle-benchmarks perl-graph r-codex
cantera perl-graph-readwrite r-coin
canu perl-hash-merge r-colorspace
cap3 perl-html-parser r-combinat
capnproto perl-html-tagset r-commonmark
capstone perl-http-cookies r-complexheatmap
cardioid perl-http-daemon r-compositions
casacore perl-http-date r-condop
cask perl-http-message r-construct
casper perl-http-negotiate r-convevol
cassandra perl-inline r-copula
catalyst perl-inline-c r-corhmm
catch2 perl-io-all r-corpcor
cbc perl-io-compress r-corrplot
cbench perl-io-html r-countrycode
cblas perl-io-prompt r-covr
cbtf perl-io-sessiondata r-cowplot
cbtf-argonavis perl-io-socket-ssl r-crayon
cbtf-argonavis-gui perl-io-string r-crosstalk
cbtf-krell perl-io-stringy r-crul
cbtf-lanl perl-io-tty r-ctc
cc65 perl-ipc-run r-cubature
ccache perl-json r-cubist
ccfits perl-libwww-perl r-curl
ccs-qcd perl-libxml-perl r-dada2
cctools perl-list-moreutils r-data-table
cdbfasta perl-list-moreutils-xs r-dbi
cdd perl-log-log4perl r-dbplyr
cddlib perl-logger-simple r-debugme
cdecimal perl-lwp-mediatypes r-decipher
cdhit perl-lwp-protocol-https r-delayedarray
cdo perl-mailtools r-delayedmatrixstats
ceed perl-math-bezier r-deldir
cereal perl-math-cdf r-dendextend
ceres-solver perl-math-cephes r-deoptim
cfitsio perl-math-matrixreal r-deoptimr
cgal perl-math-round r-desc
cgdb perl-math-vecstat r-deseq
cgdcbxd perl-module-build r-deseq2
cget perl-module-build-tiny r-desolve
cgl perl-module-implementation r-devtools
cgm perl-module-runtime r-diagrammer
cgns perl-module-runtime-conflicts r-dicekriging
chai perl-moose r-dichromat
changa perl-mozilla-ca r-diffusionmap
channelflow perl-mro-compat r-digest
chapel perl-namespace-clean r-diptest
charliecloud perl-net-http r-dirichletmultinomial
charmpp perl-net-scp-expect r-dismo
chatterbug perl-net-ssleay r-diversitree
check perl-number-format r-dnacopy
chgcentre perl-object-insideout r-do-db
chill perl-package-deprecationmanager r-domc
chlorop perl-package-stash r-doparallel
chombo perl-package-stash-xs r-dorng
chrony perl-padwalker r-dose
chrpath perl-parallel-forkmanager r-dosnow
cinch perl-params-util r-dotcall64
circos perl-params-validate r-downloader
cistem perl-parse-recdescent r-dplyr
citcoms perl-path-tiny r-dqrng
cityhash perl-pdf-api2 r-dss
ck perl-pegex r-dt
clamav perl-perl-unsafe-signals r-dtw
clamr perl-perl-version r-dygraphs
clapack perl-perl4-corelibs r-dynamictreecut
clara perl-perl6-slurp r-e1071
claw perl-perlio-gzip r-earth
cleaveland4 perl-perlio-utf8-strict r-ecp
cleverleaf perl-readonly r-edger
clfft perl-regexp-common r-ellipse
clhep perl-scalar-list-utils r-ellipsis
clinfo perl-scalar-util-numeric r-emmli
clingo perl-set-intervaltree r-energy
cln perl-set-intspan r-enrichplot
cloc perl-set-scalar r-ensembldb
cloog perl-soap-lite r-envstats
cloverleaf perl-star-fusion r-ergm
cloverleaf3d perl-statistics-basic r-europepmc
clp perl-statistics-descriptive r-evaluate
clustal-omega perl-statistics-pca r-evd
clustalw perl-sub-exporter r-exactextractr
cmake perl-sub-exporter-progressive r-exomecopy
cmaq perl-sub-identify r-exomedepth
cmark perl-sub-install r-expint
cminpack perl-sub-name r-expm
cmocka perl-sub-uplevel r-factoextra
cmockery perl-svg r-factominer
cmor perl-swissknife r-fansi
cnmem perl-sys-sigaction r-farver
cnpy perl-task-weaken r-fastcluster
cntk perl-term-readline-gnu r-fastmatch
cntk1bitsgd perl-termreadkey r-fdb-infiniummethylation-hg18
cnvnator perl-test-cleannamespaces r-fdb-infiniummethylation-hg19
codar-cheetah perl-test-deep r-ff
code-server perl-test-differences r-fftwtools
codec2 perl-test-exception r-fgsea
codes perl-test-fatal r-fields
coevp perl-test-memory-cycle r-filehash
cohmm perl-test-most r-findpython
coin3d perl-test-needs r-fit-models
coinhsl perl-test-requires r-fitdistrplus
coinutils perl-test-requiresinternet r-flashclust
collectd perl-test-warn r-flexclust
collier perl-test-warnings r-flexmix
colm perl-text-csv r-fnn
colordiff perl-text-diff r-forcats
comd perl-text-format r-foreach
comgr perl-text-simpletable r-forecast
commons-lang perl-text-soundex r-foreign
commons-lang3 perl-text-unidecode r-formatr
commons-logging perl-time-hires r-formula
compiz perl-time-piece r-fpc
compositeproto perl-timedate r-fracdiff
conda4aarch64 perl-try-tiny r-fs
conduit perl-uri r-futile-logger
connect-proxy perl-want r-futile-options
conserver perl-www-robotrules r-future
console-bridge perl-xml-dom r-future-apply
constype perl-xml-dom-xpath r-gamlss
consul perl-xml-filter-buffertext r-gamlss-data
converge perl-xml-libxml r-gamlss-dist
corenlp perl-xml-libxslt r-gbm
coreutils perl-xml-namespacesupport r-gbrd
corset perl-xml-parser r-gcrma
cosbench perl-xml-parser-lite r-gdalutils
cosma perl-xml-quote r-gdata
cosmoflow-benchmark perl-xml-regexp r-gdsfmt
cosmomc perl-xml-sax r-geiger
cosp2 perl-xml-sax-base r-genefilter
cotter perl-xml-sax-writer r-genelendatabase
couchdb perl-xml-simple r-genemeta
cowsay perl-xml-twig r-geneplotter
cp2k perl-xml-writer r-generics
cpio perl-xml-xpathengine r-genetics
cpp-httplib perl-yaml r-genie3
cppad perl-yaml-libyaml r-genomeinfodb
cppcheck pestpp r-genomeinfodbdata
cppgsl petsc r-genomicalignments
cpprestsdk pexsi r-genomicfeatures
cppunit pfft r-genomicranges
cppzmq pflask r-gensa
cpu-features pflotran r-geomorph
cpuinfo pfunit r-geonames
cquery pgdspider r-geoquery
cracklib pgi r-geor
cradl phantompeakqualtools r-geosphere
cram phast r-getopt
cray-libsci phasta r-getoptlong
cromwell phist r-ggally
cromwell-womtool phoenix r-ggbeeswarm
cronie photos r-ggbio
cryptopp php r-ggdendro
cryptsetup phrap-crossmatch-swat r-ggforce
csa-c phred r-ggjoy
cscope phylip r-ggmap
csdp phylobayesmpi r-ggplot2
ctffind phyluce r-ggplotify
ctpl picard r-ggpubr
ctre picsar r-ggraph
cub picsarlite r-ggrepel
cube pidx r-ggridges
cubelib pig r-ggsci
cubew pigz r-ggsignif
cubist pilon r-ggvis
cuda pindel r-gh
cuda-memtest pinentry r-gistr
cudnn pinfo r-git2r
cufflinks pipework r-glimma
cunit piranha r-glmnet
cups pism r-globaloptions
curl pixman r-globals
cusz pixz r-glue
cvs pkg-config r-gmodels
cxx pkgconf r-gmp
cxxopts pktools r-go-db
cyrus-sasl planck-likelihood r-goftest
czmq plasma r-gofuncr
dakota platypus r-googlevis
daligner plink r-goplot
damageproto plink-ng r-gosemsim
damaris plplot r-goseq
damselfly plumed r-gostats
darshan-runtime pmdk r-gower
darshan-util pmgr-collective r-gplots
dash pmix r-graph
datamash pmlib r-graphlayouts
dataspaces pnfft r-grbase
datatransferkit pngquant r-gridbase
date pngwriter r-gridextra
dateutils pnmpi r-gridgraphics
davix poamsa r-gsa
dbcsr pocl r-gsalib
dbus podio r-gseabase
dbus-glib polymake r-gsl
dbxtool poplddecay r-gsodr
dcap poppler r-gss
dcmtk poppler-data r-gstat
dd4hep popt r-gsubfn
ddd porta r-gtable
dealii portage r-gtools
dealii-parameter-gui portcullis r-gtrellis
debbuild postgis r-gviz
decentralized-internet postgresql r-gwmodel
deconseq-standalone powerapi r-haven
dejagnu powertop r-hdf5array
delly2 ppl r-hdf5r
delphes pplacer r-hexbin
delta ppopen-appl-amr-fdm r-hh
denovogear ppopen-appl-bem r-highr
dftbplus ppopen-appl-bem-at r-hmisc
dftd3-lib ppopen-appl-dem-util r-hms
dftfe ppopen-appl-fdm r-hoardr
dhpmm-f ppopen-appl-fdm-at r-htmltable
dhtest ppopen-appl-fem r-htmltools
dia ppopen-appl-fvm r-htmlwidgets
dialign ppopen-at r-httpcode
dialign-tx ppopen-math-mp r-httpuv
diamond ppopen-math-vis r-httr
diffmark prank r-hwriter
diffsplice precice r-hypergraph
diffutils predixy r-ica
dihydrogen premake-core r-igraph
dimemas presentproto r-illuminahumanmethylation450kanno-ilmn12-hg19
ding-libs preseq r-illuminaio
dire presto r-imager
direnv price r-impute
discovar primer3 r-influencer
discovardenovo prinseq-lite r-ini
disktype printproto r-inline
dislin prism r-interactivedisplaybase
distcc prmon r-intervals
diy prng r-inum
dlpack probconsrna r-ipred
dmd procps r-iranges
dmidecode procps-ng r-irdisplay
dmlc-core prodigal r-irkernel
dmtcp profugusmc r-irlba
dmxproto proj r-isdparser
dnsmap prokka r-iso
dnsmasq prometheus r-iterators
dnstop protobuf r-janitor
dnstracer protobuf-c r-jaspar2018
docbook-xml proxymngr r-jomo
docbook-xsl prrte r-jpeg
dock pruners-ninja r-jsonlite
dos2unix ps-lite r-kegg-db
dosfstools psi4 r-kegggraph
dotconf pslib r-keggrest
dotnet-core-sdk psm r-kernlab
double-conversion psmc r-kernsmooth
doxygen pstreams r-kknn
dpdk pugixml r-knitr
draco pulseaudio r-ks
dracut pumi r-labeling
dramsim2 pv r-lambda-r
dray pvm r-laplacesdemon
dri2proto pxz r-lars
dri3proto py-3to2 r-later
drill py-4suite-xml r-lattice
dropwatch py-abipy r-latticeextra
druid py-absl-py r-lava
ds py-accimage r-lazyeval
dsdp py-acme-tiny r-ldheatmap
dsrc py-adal r-leaflet
dssp py-adb-enhanced r-leaps
dtcmp py-addict r-learnbayes
duperemove py-adios r-leiden
dyninst py-advancedhtmlparser r-lfe
dysco py-aenum r-lhs
e2fsprogs py-affine r-libcoin
ea-utils py-agate r-limma
eagle py-agate-dbf r-listenv
earlyoom py-agate-excel r-lme4
easybuild py-agate-sql r-lmtest
ebms py-aiofiles r-locfit
eccodes py-aiohttp r-log4r
ecdsautils py-aioredis r-loo
ecflow py-alabaster r-lpsolve
eclipse-gcj-parser py-alembic r-lsei
ecos py-altgraph r-lubridate
ecp-io-sdk py-amqp r-lumi
ecp-proxy-apps py-ansible r-magic
ecp-viz-sdk py-antlr4-python3-runtime r-magick
ed py-apache-beam r-magrittr
editline py-apache-libcloud r-makecdfenv
editres py-apex r-maldiquant
eem py-apipkg r-manipulatewidget
efivar py-appdirs r-mapplots
eigen py-applicationinsights r-mapproj
elasticsearch py-appnope r-maps
elemental py-apptools r-maptools
elfutils py-apscheduler r-markdown
elk py-archspec r-mass
elmerfem py-argcomplete r-matlab
elpa py-argon2-cffi r-matr
elsd py-argparse r-matrix
elsdc py-args r-matrixmodels
elsi py-arrow r-matrixstats
emacs py-arviz r-mclust
ember py-asciitree r-mcmcglmm
emboss py-asdf r-mco
embree py-ase r-mda
enca py-asgiref r-memoise
enchant py-asn1crypto r-mergemaid
energyplus py-aspy-yaml r-metap
entrezdirect py-asserts r-methylumi
entt py-asteval r-mgcv
environment-modules py-astor r-mgraster
eospac py-astpretty r-mice
eq-r py-astroid r-mime
er py-astropy r-minfi
erfa py-astropy-healpix r-miniui
erlang py-astropy-helpers r-minqa
ermod py-astunparse r-misc3d
erne py-async-generator r-mitml
es-shell py-async-timeout r-mitools
esmf py-asyncio r-mixtools
espanso py-atomicwrites r-mlbench
essl py-atropos r-mlinterfaces
etcd py-attrs r-mlr
ethminer py-audioread r-mlrmbo
ethtool py-autograd r-mmwrweek
etsf-io py-autograd-gamma r-mnormt
evemu py-autopep8 r-modelmetrics
everytrace py-auxlib r-modelr
everytrace-example py-avro r-modeltools
evieext py-avro-json-serializer r-mpm
evtgen py-avro-python3 r-msnbase
exa py-awesome-slugify r-multcomp
exabayes py-awkward1 r-multicool
examinimd py-azote r-multitaper
examl py-azure-batch r-multtest
exampm py-azure-cli r-munsell
exasp2 py-azure-cli-command-modules-nspkg r-mvtnorm
exiv2 py-azure-cli-core r-mzid
exmcutils py-azure-cli-nspkg r-mzr
exodusii py-azure-cli-telemetry r-nanotime
exonerate py-azure-common r-ncbit
exonerate-gff3 py-azure-core r-ncdf4
expat py-azure-cosmos r-network
expect py-azure-datalake-store r-networkd3
express py-azure-functions-devops-build r-nimble
extrae py-azure-graphrbac r-nleqslv
exuberant-ctags py-azure-identity r-nlme
eztrace py-azure-keyvault r-nloptr
f2c py-azure-keyvault-certificates r-nmf
f77-zmq py-azure-keyvault-keys r-nmof
f90cache py-azure-keyvault-nspkg r-nnet
fabtests py-azure-keyvault-secrets r-nnls
fairlogger py-azure-loganalytics r-nor1mix
faiss py-azure-mgmt-advisor r-nortest
fakechroot py-azure-mgmt-apimanagement r-np
falcon py-azure-mgmt-appconfiguration r-npsurv
fann py-azure-mgmt-applicationinsights r-numderiv
faodel py-azure-mgmt-authorization r-oligoclasses
fast-global-file-status py-azure-mgmt-batch r-openssl
fasta py-azure-mgmt-batchai r-openxlsx
fastdb py-azure-mgmt-billing r-optparse
fastdfs py-azure-mgmt-botservice r-ordinal
fastjar py-azure-mgmt-cdn r-org-hs-eg-db
fastjet py-azure-mgmt-cognitiveservices r-organismdbi
fastjson py-azure-mgmt-compute r-packrat
fastmath py-azure-mgmt-consumption r-pacman
fastme py-azure-mgmt-containerinstance r-paleotree
fastp py-azure-mgmt-containerregistry r-pamr
fastphase py-azure-mgmt-containerservice r-pan
fastq-screen py-azure-mgmt-core r-parallelmap
fastqc py-azure-mgmt-cosmosdb r-paramhelpers
fastqvalidator py-azure-mgmt-datalake-analytics r-party
fasttext py-azure-mgmt-datalake-store r-partykit
fasttransforms py-azure-mgmt-datamigration r-pathview
fasttree py-azure-mgmt-deploymentmanager r-pbapply
fastx-toolkit py-azure-mgmt-devtestlabs r-pbdzmq
faust py-azure-mgmt-dns r-pbkrtest
fca py-azure-mgmt-eventgrid r-pcamethods
fcgi py-azure-mgmt-eventhub r-pcapp
fd-find py-azure-mgmt-hdinsight r-permute
fdupes py-azure-mgmt-imagebuilder r-pfam-db
feh py-azure-mgmt-iotcentral r-phangorn
fenics py-azure-mgmt-iothub r-phantompeakqualtools
fenics-dolfinx py-azure-mgmt-iothubprovisioningservices r-philentropy
feq-parse py-azure-mgmt-keyvault r-phylobase
fermi py-azure-mgmt-kusto r-phyloseq
fermikit py-azure-mgmt-loganalytics r-phylostratr
fermisciencetools py-azure-mgmt-managedservices r-phytools
ferret py-azure-mgmt-managementgroups r-picante
ffb py-azure-mgmt-maps r-pillar
ffmpeg py-azure-mgmt-marketplaceordering r-pkgbuild
ffr py-azure-mgmt-media r-pkgconfig
ffsb py-azure-mgmt-monitor r-pkgload
fftw py-azure-mgmt-msi r-pkgmaker
fgsl py-azure-mgmt-netapp r-plogr
figlet py-azure-mgmt-network r-plot3d
figtree py-azure-mgmt-nspkg r-plotly
file py-azure-mgmt-policyinsights r-plotmo
filebench py-azure-mgmt-privatedns r-plotrix
filo py-azure-mgmt-rdbms r-pls
filtlong py-azure-mgmt-recoveryservices r-plyr
fimpute py-azure-mgmt-recoveryservicesbackup r-pmcmr
find-circ py-azure-mgmt-redhatopenshift r-png
findbugs py-azure-mgmt-redis r-polspline
findutils py-azure-mgmt-relay r-polyclip
fio py-azure-mgmt-reservations r-polynom
fipscheck py-azure-mgmt-resource r-popgenome
fish py-azure-mgmt-search r-popvar
fixesproto py-azure-mgmt-security r-powerlaw
fj py-azure-mgmt-servicebus r-prabclus
fjcontrib py-azure-mgmt-servicefabric r-praise
fl py-azure-mgmt-signalr r-preprocesscore
flac py-azure-mgmt-sql r-prettyunits
flann py-azure-mgmt-sqlvirtualmachine r-processx
flash py-azure-mgmt-storage r-prodlim
flatbuffers py-azure-mgmt-trafficmanager r-progress
flatcc py-azure-mgmt-web r-proj
flcl py-azure-multiapi-storage r-proj4
flecsale py-azure-nspkg r-promises
flecsi py-azure-storage-common r-protgenerics
flecsph py-azure-storage-nspkg r-proto
flex py-azureml-automl-core r-proxy
flexiblas py-azureml-core r-pryr
flibcpp py-azureml-dataprep r-ps
flink py-azureml-dataprep-native r-pscbs
flint py-azureml-dataset-runtime r-pspline
flit py-azureml-pipeline r-psych
fltk py-azureml-pipeline-core r-ptw
flume py-azureml-pipeline-steps r-purrr
flux-core py-azureml-sdk r-qtl
flux-sched py-azureml-telemetry r-quadprog
fluxbox py-azureml-train r-quantmod
fmt py-azureml-train-automl-client r-quantreg
foam-extend py-azureml-train-core r-quantro
folly py-azureml-train-restclients-hyperdrive r-qvalue
font-util py-babel r-r-cache
fontcacheproto py-backcall r-r-methodss3
fontconfig py-backports-abc r-r-oo
fontsproto py-backports-functools-lru-cache r-r-utils
fonttosfnt py-backports-lzma r-r6
form py-backports-shutil-get-terminal-size r-randomfields
fortran py-backports-ssl-match-hostname r-randomfieldsutils
fortrilinos py-backports-tempfile r-randomforest
foundationdb py-backports-weakref r-randomglm
fox py-basemap r-ranger
fp16 py-basis-set-exchange r-rann
fpc py-bcbio-gff r-rappdirs
fping py-bcolz r-raster
fpocket py-bcrypt r-rbgl
fqtrim py-beautifulsoup4 r-rbokeh
fr-hit py-billiard r-rcmdcheck
fraggenescan py-binaryornot r-rcolorbrewer
freebayes py-bintrees r-rcpp
freeglut py-binwalk r-rcppannoy
freeimage py-biom-format r-rcpparmadillo
freeipmi py-biomine r-rcppblaze
freetype py-biopandas r-rcppcctz
freexl py-biopython r-rcppcnpy
fribidi py-bitarray r-rcppeigen
frontistr py-bitstring r-rcpphnsw
fseq py-black r-rcppparallel
fsl py-bleach r-rcppprogress
fslsfonts py-blessed r-rcurl
fstobdf py-blessings r-rda
fstrack py-blinker r-rdpack
ftgl py-blis r-readbitmap
fujitsu-mpi py-blosc r-readr
fujitsu-ssl2 py-bmap-tools r-readxl
funhpc py-bokeh r-recipes
fuse-overlayfs py-boltons r-registry
fyba py-boom-boot-manager r-rematch
fzf py-boto r-rematch2
g4abla py-boto3 r-remotes
g4emlow py-botocore r-reordercluster
g4ensdfstate py-bottle r-reportingtools
g4incl py-bottleneck r-repr
g4ndl py-breakseq2 r-reprex
g4neutronxs py-breathe r-reshape
g4particlexs py-brian r-reshape2
g4photonevaporation py-brian2 r-reticulate
g4pii py-brotlipy r-rex
g4radioactivedecay py-bsddb3 r-rferns
g4realsurface py-bx-python r-rgdal
g4saiddata py-bz2file r-rgenoud
g4tendl py-cached-property r-rgeos
gamess-ri-mp2-miniapp py-cachetools r-rgexf
gams py-cairocffi r-rgl
ganglia py-cantoolz r-rgooglemaps
gapbs py-cartopy r-rgraphviz
gapcloser py-catalogue r-rhdf5
gapfiller py-cclib r-rhdf5lib
gasnet py-cdat-lite r-rhmmer
gate py-cdo r-rhtslib
gatepet2stir py-cdsapi r-rinside
gatk py-cekit r-rio
gaudi py-celery r-rjags
gaussian py-certifi r-rjava
gaussian-src py-certipy r-rjson
gaussian-view py-cf-units r-rjsonio
gawk py-cffi r-rlang
gblocks py-cfgv r-rmariadb
gcc py-cftime r-rmarkdown
gccmakedep py-chai r-rminer
gccxml py-chainer r-rmpfr
gconf py-chainmap r-rmpi
gcta py-chalice r-rms
gdal py-chardet r-rmutil
gdb py-charm4py r-rmysql
gdbm py-checkm-genome r-rnaseqmap
gdk-pixbuf py-cheetah r-rncl
gdl py-cheroot r-rnexml
gdrcopy py-cherrypy r-rngtools
geant4 py-chronyk r-rnoaa
geant4-data py-cinema-lib r-robust
geant4-vmc py-click r-robustbase
gearshifft py-click-didyoumean r-roc
gemmlowp py-click-plugins r-rocr
genemark-et py-click-repl r-rodbc
gengetopt py-cligj r-rook
genomefinisher py-clint r-rots
genometools py-clipboard r-roxygen2
genomeworks py-cloudpickle r-rpart
genrich py-clustershell r-rpart-plot
geode py-cmake r-rpostgresql
geoip py-cmake-format r-rprojroot
geoip-api-c py-cmocean r-rrblup
geopm py-cnvkit r-rrcov
geos py-coapthon3 r-rrpp
gettext py-codecov r-rsamtools
gflags py-cogent r-rsnns
ghost py-coilmq r-rsolnp
ghostscript py-colorama r-rspectra
ghostscript-fonts py-coloredlogs r-rsqlite
giflib py-colorful r-rstan
ginac py-colorlog r-rstantools
ginkgo py-colormath r-rstudioapi
giraph py-colorpy r-rsvd
git py-colorspacious r-rtracklayer
git-fat-git py-commonmark r-rtsne
git-imerge py-configargparse r-runit
git-lfs py-configobj r-rvcheck
gitconddb py-configparser r-rversions
gl2ps py-contextlib2 r-rvest
glew py-contextvars r-rzmq
glfmultiples py-convertdate r-s4vectors
glfw py-cookiecutter r-samr
glib py-counter r-sandwich
glib-networking py-cov-core r-scales
glibmm py-coverage r-scater
glimmer py-cppheaderparser r-scatterplot3d
glm py-crcmod r-scrime
global py-crispresso r-sctransform
globalarrays py-crossmap r-sdmtools
glog py-cryptography r-segmented
gloo py-cssselect r-selectr
glpk py-csvkit r-seqinr
glproto py-cudf r-seqlogo
glusterfs py-cuml r-sessioninfo
glvis py-cupy r-seurat
gmake py-current r-sf
gmap-gsnap py-cutadapt r-sfsmisc
gmime py-cvxopt r-shape
gmodel py-cvxpy r-shiny
gmp py-cycler r-shinydashboard
gmsh py-cymem r-shinyfiles
gmt py-cyordereddict r-shortread
gmtsar py-cython r-siggenes
gnat py-cyvcf2 r-simpleaffy
gnome-common py-d2to1 r-singlecellexperiment
gnupg py-dask r-sitmo
gnuplot py-dataclasses r-sm
gnuradio py-dateparser r-smoof
gnutls py-dbf r-sn
go py-dbfread r-snakecase
go-bootstrap py-deap r-snow
go-md2man py-decorator r-snowfall
gobject-introspection py-deeptools r-snprelate
goblin-hmc-sim py-deeptoolsintervals r-snpstats
googletest py-defusedxml r-som
gosam-contrib py-dendropy r-somaticsignatures
gotcha py-deprecated r-sourcetools
gource py-deprecation r-sp
gpdb py-descartes r-spacetime
gperf py-devlib r-spam
gperftools py-dgl r-sparsem
gpgme py-dill r-spatial
gpi-2 py-discover r-spatialeco
gplates py-diskcache r-spatialpack
gprolog py-distributed r-spatialreg
gpu-burn py-distro r-spatstat
gqrx py-django r-spatstat-data
gr-osmosdr py-dlcpar r-spatstat-utils
grackle py-dnaio r-spdata
gradle py-docker r-spdep
grads py-dockerpy-creds r-speedglm
grafana py-docopt r-spem
grandr py-docutils r-splancs
graph500 py-docutils-stubs r-splitstackshape
graphblast py-dominate r-sqldf
graphicsmagick py-dotnetcore2 r-squarem
graphite2 py-doxypy r-squash
graphlib py-doxypypy r-sseq
graphmap py-dp-gp-cluster r-stabledist
graphviz py-drmaa r-stanheaders
grass py-dryscrape r-stargazer
graylog2-server py-dxchange r-statmod
grep py-dxfile r-statnet-common
grib-api py-earthengine-api r-stringi
gridlab-d py-easybuild-easyblocks r-stringr
grnboost py-easybuild-easyconfigs r-strucchange
groff py-easybuild-framework r-subplex
gromacs py-ecdsa r-summarizedexperiment
grpc py-ecos r-suppdists
gsettings-desktop-schemas py-edffile r-survey
gsl py-editdistance r-survival
gslib py-eg r-sva
gtk-doc py-elasticsearch r-sys
gtkmm py-elephant r-tarifx
gtkorvo-atl py-emcee r-taxizedb
gtkorvo-cercs-env py-empy r-tclust
gtkorvo-dill py-entrypoints r-teachingdemos
gtkorvo-enet py-enum34 r-tensor
gtkplus py-envisage r-tensora
gtksourceview py-ephem r-testit
gts py-epydoc r-testthat
guacamole-client py-espresso r-tfbstools
guacamole-server py-espressopp r-tfmpvalue
guidance py-et-xmlfile r-th-data
guile py-eventlet r-threejs
gunrock py-execnet r-tibble
gurobi py-exodus-bundler r-tidycensus
gzip py-extension-helpers r-tidygraph
h2database py-extras r-tidyr
h5cpp py-fabric r-tidyselect
h5hut py-falcon r-tidyverse
h5part py-fallocate r-tiff
h5utils py-fastaindex r-tigris
h5z-zfp py-fastavro r-timedate
hacckernels py-fastcache r-tinytex
hackrf-host py-fastcluster r-tmixclust
hadoop py-fastdtw r-topgo
hal py-fasteners r-triebeard
halc py-fastrlock r-trimcluster
half py-faststructure r-truncdist
hama py-fenics-dijitso r-truncnorm
hapcut2 py-fenics-dolfinx r-trust
hapdip py-fenics-ffcx r-tseries
haploview py-fenics-fiat r-tsne
haproxy py-fenics-ufl r-ttr
hardlink py-filelock r-tweenr
harfbuzz py-filemagic r-txdb-hsapiens-ucsc-hg18-knowngene
harminv py-fiona r-txdb-hsapiens-ucsc-hg19-knowngene
hashcat py-fiscalyear r-tximport
hazelcast py-fisher r-tximportdata
hbase py-fits-tools r-ucminf
hbm-dramsim2 py-fixtures r-udunits2
hc py-flake8 r-units
hcol py-flake8-import-order r-upsetr
hcoll py-flake8-polyfill r-urca
hdf py-flask r-urltools
hdf5 py-flask-compress r-usethis
hdf5-blosc py-flask-socketio r-utf8
hdfview py-flexx r-uuid
healpix-cxx py-flye r-uwot
heaptrack py-fn-py r-variantannotation
heffte py-fortran-language-server r-varselrf
helics py-fortranformat r-vcd
help2man py-fparser r-vctrs
henson py-fprettify r-vegan
hepmc py-freezegun r-vfs
hepmc3 py-fsspec r-vgam
hepmcanalysis py-funcsigs r-vioplot
heppdt py-functools32 r-vipor
heputils py-fusepy r-viridis
hercules py-future r-viridislite
herwig3 py-futures r-visnetwork
herwigpp py-fypp r-vsn
hibench py-gast r-watermelon
hic-pro py-gcovr r-webshot
highfive py-gdbgui r-wgcna
highwayhash py-gdc-client r-whisker
hiop py-gee-asset-manager r-withr
hip py-geeadd r-xde
hip-rocclr py-geeup r-xfun
hipblas py-genders r-xgboost
hipcub py-geneimpacts r-xlconnect
hipfort py-genshi r-xlconnectjars
hipify-clang py-gensim r-xlsx
hipsparse py-geoalchemy2 r-xlsxjars
hipsycl py-geopandas r-xmapbridge
hiredis py-gevent r-xml
hisat2 py-gf256 r-xml2
hisea py-git-review r-xnomial
hive py-gitdb r-xopen
hmmer py-gitpython r-xtable
homer py-gluoncv r-xts
hoomd-blue py-gnuplot r-xvector
hotspot py-goatools r-yaimpute
hpcc py-google r-yaml
hpccg py-google-api-core r-yapsa
hpcg py-google-api-python-client r-yaqcaffy
hpctoolkit py-google-auth r-yarn
hpcviewer py-google-auth-httplib2 r-zeallot
hpgmg py-google-auth-oauthlib r-zip
hping py-google-cloud-core r-zlibbioc
hpl py-google-cloud-storage r-zoo
hpx py-google-pasta r3d
hpx5 py-google-resumable-media rabbitmq
hsa-rocr-dev py-googleapis-common-protos racon
hsakmt py-googledrivedownloader raft
hsakmt-roct py-gosam ragel
hsf-cmaketools py-gpaw raja
hssp py-gpustat ramulator
hstr py-gputil randfold
htop py-gpy random123
htslib py-gpytorch randrproto
http-get py-gql range-v3
http-load py-graphql-core rankstr
http-parser py-graphviz rapidjson
http-ping py-greenlet rasdaemon
http-post py-grequests ravel
httpd py-griddataformats raxml
httperf py-grpcio ray
httpie py-gsd rccl
httping py-gsi rclone
httpress py-guidata rdc
hub py-guiqwt rdma-core
hudi py-h11 rdp-classifier
hugo py-h2 rdptools
hunspell py-h5glance re2
hwloc py-h5py re2c
hybpiper py-h5sh readfq
hybridsim py-hacking readline
hydra py-hatchet recon
hydrogen py-hdbscan recorder
hyperscan py-hdfs recordproto
hyphy py-healpy redis
hypre py-heapdict reditools
i3 py-hepdata-validator redset
ibm-databroker py-hepunits redundans
ibm-java py-hieroglyph reframe
ibmisc py-hiredis regcm
icarus py-horovod relax
iceauth py-hpack relion
icedtea py-hpcbench remhos
icet py-hpccm rempi
ico py-hstspreload rename
icu4c py-html2text rendercheck
id3lib py-html5lib renderproto
idba py-htmlgen repeatmasker
idl py-htseq repeatmodeler
iegenlib py-httpbin repeatscout
ignite py-httpcore resourceproto
igraph py-httplib2 revbayes
igv py-httptools revocap-coupler
igvtools py-httpx revocap-refiner
ilmbase py-humanfriendly rgb
imagemagick py-humanize rhash
imake py-hvac rinetd
imlib2 py-hyperframe ripgrep
imp py-hypothesis rivet
impute2 py-ics rlwrap
infernal py-identify rmats
influxdb py-idna rmlab
iniparser py-idna-ssl rna-seqc
inputproto py-illumina-utils rnaz
intel py-imageio rng-tools
intel-daal py-imagesize rngstreams
intel-gpu-tools py-iminuit rocalution
intel-ipp py-immutables rocblas
intel-llvm py-importlib rocfft
intel-mkl py-importlib-metadata rocketmq
intel-mpi py-importlib-resources rocksdb
intel-mpi-benchmarks py-inference-schema rockstar
intel-parallel-studio py-inheritance rocm-bandwidth-test
intel-pin py-iniparse rocm-clang-ocl
intel-tbb py-intervaltree rocm-cmake
intel-xed py-invoke rocm-dbgapi
interproscan py-ipaddress rocm-debug-agent
intltool py-ipdb rocm-device-libs
ioapi py-ipykernel rocm-gdb
ior py-ipyparallel rocm-opencl
iozone py-ipython rocm-smi
ipcalc py-ipython-cluster-helper rocm-smi-lib
iperf2 py-ipython-genutils rocm-tensile
iperf3 py-ipywidgets rocm-validation-suite
ipopt py-irpf90 rocminfo
iproute2 py-isodate rocprim
iq-tree py-isort rocprofiler-dev
isaac py-itsdangerous rocrand
isaac-server py-jaraco-functools rocsolver
isc-dhcp py-javaproperties rocsparse
isescan py-jdatetime rocthrust
isl py-jdcal roctracer-dev
iso-codes py-jedi rodinia
ispc py-jeepney root
istio py-jellyfish rose
itk py-jinja2 ross
itstool py-jinja2-time routino
itsx py-jmespath rpcsvc-proto
iwyu py-joblib rr
jackcess py-jplephem rrdtool
jafka py-jprops rsbench
jags py-jpype1 rsem
jali py-jsmin rstart
jansi py-json-get rsync
jansi-native py-json5 rsyslog
jansson py-jsondiff rt-tests
jasper py-jsonpatch rtags
jbigkit py-jsonpickle rtax
jblob py-jsonpointer ruby
jchronoss py-jsonref ruby-asciidoctor
jdk py-jsonschema ruby-erubis
jellyfish py-junit-xml ruby-gnuplot
jemalloc py-jupyter ruby-hpricot
jetty-project py-jupyter-client ruby-mustache
jhpcn-df py-jupyter-console ruby-narray
jimtcl py-jupyter-core ruby-rake
jline3 py-jupyterhub ruby-rdiscount
jmol py-jupyterlab ruby-ronn
jose py-jupyterlab-pygments ruby-rubyinline
jpegoptim py-jupyterlab-server ruby-svn2git
jq py-keras ruby-terminal-table
json-c py-keras-applications ruby-thor
json-cwx py-keras-preprocessing ruby-tmuxinator
json-fortran py-kerberos ruby-unicode-display-width
json-glib py-kitchen ruby-xdg
jsoncpp py-kiwisolver ruby-zentest
jstorm py-kmodes rust
jube py-knack rust-bindgen
judy py-kombu sabre
julea py-labours saga-gis
julia py-lark-parser sailfish
junit4 py-latexcodec salmon
k8 py-lazy sambamba
kafka py-lazy-object-proxy samblaster
kahip py-lazy-property samrai
kaiju py-lazyarray samtools
kaks-calculator py-leather sandbox
kaldi py-libconf satsuma2
kallisto py-libensemble savanna
karma py-librosa saws
kassiopeia py-lifelines sblim-sfcc
kbd py-ligo-segments sbml
kbproto py-line-profiler sbt
kcov py-linecache2 scala
kdiff3 py-lit scalasca
kea py-llvmlite scallop
kealib py-lmfit scalpel
keepalived py-lmodule scan-for-matches
kentutils py-localcider scantailor
keyutils py-locket scipoptsuite
kibana py-lockfile scons
kim-api py-logilab-common scorec-core
kinesis py-louie scorep
kitty py-lru-dict scotch
kmergenie py-lscsoft-glue scr
kmod py-luigi screen
knem py-lxml scripts
kokkos py-lz4 scrnsaverproto
kokkos-kernels py-lzstring scs
kokkos-kernels-legacy py-m2r sctk
kokkos-legacy py-macholib sdl2
kokkos-nvcc-wrapper py-machotools sdl2-image
kraken py-macs2 sdsl-lite
kraken2 py-maestrowf seacas
krb5 py-magic sed
krims py-mako sensei
kripke py-markdown sentencepiece
kubernetes py-markovify sentieon-genomics
kvasir-mpl py-markupsafe seqan
kvtree py-matplotlib seqkit
kylin py-mayavi seqprep
ladot py-mccabe seqtk
laghos py-mdanalysis serf
lame py-mechanize sessreg
lammps py-memory-profiler setserial
lapackpp py-merlin setxkbmap
last py-metasv sfcgal
lastz py-methylcode sga
laszip py-mg-rast-tools sgpp
latte py-mido shadow
launchmon py-minrpc shapeit
lazyten py-misopy shapeit4
lbann py-mistune shapelib
lbxproxy py-mixedhtseq shared-mime-info
lbzip2 py-mlperf-logging shark
lcals py-mlxtend shc
lcio py-mmcv shengbte
lcms py-mmtf-python shiny-server
lcov py-mo-pack shiro
ldak py-mock shocklibs
ldc py-modred shoremap
ldc-bootstrap py-moltemplate shortbred
legion py-monotonic shortstack
lemon py-monty showfont
leptonica py-more-itertools shtools
less py-mpi4py shuffile
lesstif py-mpld3 sickle
leveldb py-mpmath siesta
lftp py-msal signalp
lhapdf py-msal-extensions signify
lhapdf5 py-msgpack silo
libaec py-msrest simgrid
libaio py-msrestazure simmetrix-simmodsuite
libapplewm py-multi-key-dict simplemoc
libarchive py-multidict simul
libassuan py-multiprocess simulationio
libatasmart py-multiqc singularity
libatomic-ops py-munch singularity-legacy
libbacktrace py-murmurhash sio
libbeagle py-mx sirius
libbeato py-myhdl skilion-onedrive
libbinio py-mypy skopeo
libbsd py-mypy-extensions sl
libbson py-mysql-connector-python slang
libbytesize py-mysqlclient slate
libc py-mysqldb1 sleef
libcanberra py-natsort slepc
libcap py-nbclient slf4j
libcap-ng py-nbconvert slider
libceed py-nbformat sloccount
libcerf py-nc-time-axis slurm
libcgroup py-ndg-httpsclient smalt
libcint py-neo smartdenovo
libcircle py-neobolt smartmontools
libconfig py-neotime smof
libconfuse py-nest-asyncio smproxy
libcroco py-nestle snakemake
libctl py-netcdf4 snap
libcudf py-netifaces snap-berkeley
libcuml py-netket snap-korf
libcumlprims py-networkit snappy
libdaemon py-networkx snbone
libdap4 py-nltk sniffles
libdatrie py-nodeenv snpeff
libdivsufsort py-nose snphylo
libdmx py-nose-cov snptest
libdrm py-nose2 soapdenovo-trans
libdwarf py-nosexcover soapdenovo2
libeatmydata py-notebook soci
libedit py-numba sofa-c
libelf py-numcodecs sollve
libemos py-numexpr solr
libepoxy py-numexpr3 somatic-sniper
libestr py-numpy sonlib
libev py-numpydoc sortmerna
libevdev py-nvidia-ml-py sosflow
libevent py-nvidia-ml-py3 source-highlight
libevpath py-oauth2client sowing
libexif py-oauthlib sox
libfabric py-olefile spades
libfastcommon py-onnx span-lite
libfastjson py-ont-fast5-api spark
libffi py-opencensus sparse
libffs py-opencensus-context sparsehash
libfive py-openpmd-validator sparta
libflame py-openpyxl spath
libfontenc py-openslide-python spdlog
libfs py-opentuner spectrum-mpi
libfuse py-opppy speex
libgcrypt py-opt-einsum speexdsp
libgd py-or-tools spfft
libgeotiff py-ordereddict spglib
libgit2 py-oset sph2pipe
libgpg-error py-osqp spherepack
libgpuarray py-overpy spindle
libgridxc py-owslib spiral
libgssglue py-packaging spla
libgtextutils py-palettable spm
libharu py-pamela spot
libhbaapi py-pandas sprng
libhio py-pandocfilters sqlite
libhugetlbfs py-parameterized sqlite-jdbc
libiberty py-paramiko sqlitebrowser
libibumad py-paramz sqoop
libical py-parse squashfs
libice py-parsedatetime squid
libiconv py-parso sratoolkit
libid3tag py-partd sse2neon
libidl py-particle sshpass
libidn2 py-path-py ssht
libimagequant py-pathlib ssmtp
libimobiledevice py-pathlib2 sspace-longread
libint py-pathos sspace-standard
libisal py-pathspec sst-core
libiscsi py-patsy sst-dumpi
libjpeg py-pauvre sst-elements
libjpeg-turbo py-pbr sst-macro
libjson py-pep8 sst-transports
libjwt py-pep8-naming stacks
libkcapi py-performance staden-io-lib
libkml py-periodictable star
libksba py-petastorm star-ccm-plus
liblas py-petsc4py startup-notification
liblbxutil py-pexpect stat
liblockfile py-phonopy stata
libluv py-pickleshare static-analysis-suite
libmad py-picrust stc
libmatheval py-pid steps
libmaxminddb py-pil stinger
libmesh py-pillow storm
libmetalink py-pillow-simd stow
libmicrohttpd py-pint strace
libmmtf-cpp py-pip stream
libmng py-pipits strelka
libmnl py-pispino stress
libmo-unpack py-pkgconfig string-view-lite
libmodbus py-pkginfo stringtie
libmonitor py-plac structure
libnbc py-planar strumpack
libnet py-planet su2
libnetfilter-conntrack py-plotly sublime-text
libnetworkit py-pluggy subread
libnfnetlink py-ply subversion
libnftnl py-pmw suite-sparse
libnl py-pomegranate sumaclust
libnotify py-portalocker sumo
libnova py-portend sundials
libnrm py-poster superlu
libnsl py-pox superlu-dist
libogg py-poyo superlu-mt
liboldx py-ppft supernova
libopts py-pre-commit sw4lite
libp11 py-preshed swap-assembler
libpam py-prettytable swarm
libpaper py-profilehooks swfft
libpcap py-progress swftools
libpciaccess py-progressbar2 swiftsim
libpeas py-projectq swig
libpfm4 py-prometheus-client swipl
libpipeline py-prompt-toolkit symengine
libplist py-protobuf symlinks
libpmemobj-cpp py-psutil sympol
libpng py-psyclone sysbench
libproxy py-psycopg2 syscalc
libpsl py-ptyprocess sysfsutils
libpthread-stubs py-pudb sysget
libquo py-pure-eval sysstat
librdkafka py-pure-sasl systemtap
librelp py-py sz
librmm py-py-cpuinfo tabix
librom py-py-spy tajo
librsb py-py2bit talass
librsvg py-py2cairo talloc
librtlsdr py-py2neo tangram
libsamplerate py-py4j tantan
libseccomp py-py6s tar
libsecret py-pyani targetp
libsharp py-pyarrow task
libshm py-pyasn1 taskd
libsigcpp py-pyasn1-modules taskflow
libsigsegv py-pybedtools tasmanian
libsm py-pybigwig tassel
libsndfile py-pybind11 tau
libsodium py-pybtex tauola
libspatialindex py-pybtex-docutils tbl2asn
libspatialite py-pycairo tcl
libspiro py-pycares tcl-itcl
libsplash py-pycbc tcl-tcllib
libssh py-pychecker tcl-tclxml
libssh2 py-pycifrw tclap
libsvm py-pycmd tcoffee
libszip py-pycodestyle tcpdump
libtar py-pycosat tcptrace
libtasn1 py-pycparser tcsh
libtermkey py-pycrypto tdengine
libtheora py-pycuda tealeaf
libtiff py-pycurl teckit
libtirpc py-pydatalog tecplot
libtlx py-pydeps templight
libtomlc99 py-pydispatcher templight-tools
libtommath py-pydot tengine
libtool py-pydot2 tensorflow-serving-client
libtree py-pydotplus termcap
libuecc py-pydv tesseract
libunistring py-pyeda testdfsio
libunwind py-pyelftools tetgen
libusb py-pyepsg tethex
libusbmuxd py-pyface texinfo
libuser py-pyfaidx texlive
libuuid py-pyfasta texstudio
libuv py-pyfftw textparser
libvdwxc py-pyfits tfel
libverto py-pyflakes the-platinum-searcher
libvips py-pygdal the-silver-searcher
libvorbis py-pygdbmi thepeg
libvterm py-pygelf thornado-mini
libwebp py-pygit2 thrift
libwebsockets py-pyglet thrust
libwindowswm py-pygments tig
libx11 py-pygments-pytest time
libxau py-pygobject timedatex
libxaw py-pygps timemory
libxaw3d py-pygpu tinker
libxc py-pygresql tinyxml
libxcb py-pygtk tinyxml2
libxcomposite py-pyheadtail tioga
libxcrypt py-pyinstrument tippecanoe
libxcursor py-pyinstrument-cext tiptop
libxdamage py-pyjwt tix
libxdmcp py-pyke tixi
libxevie py-pykml tk
libxext py-pykwalify tldd
libxfixes py-pyliblzma tmalign
libxfont py-pylint tmhmm
libxfont2 py-pymatgen tmux
libxfontcache py-pymc3 tomcat
libxft py-pymeeus tophat
libxi py-pyminifier totalview
libxinerama py-pymol tpm2-tss
libxkbcommon py-pymongo tppred
libxkbfile py-pymorph tracer
libxkbui py-pympler transabyss
libxml2 py-pymysql transdecoder
libxmu py-pynacl transposome
libxp py-pynio transrate
libxpm py-pynn transset
libxpresent py-pyodbc trapproto
libxprintapputil py-pyomo tree
libxprintutil py-pyopencl treelite
libxrandr py-pyopenssl treesub
libxrender py-pypar trf
libxres py-pyparsing triangle
libxscrnsaver py-pypeflow trident
libxshmfence py-pypeg2 trilinos
libxslt py-pyperclip trilinos-catalyst-ioss-adapter
libxsmm py-pyperf trimal
libxstream py-pyprecice trimgalore
libxt py-pyprof2html trimmomatic
libxtrap py-pyproj trinity
libxtst py-pyqi trinotate
libxv py-pyqt4 trnascan-se
libxvmc py-pyqt5 tskit
libxxf86dga py-pyquaternion tulip
libxxf86misc py-pyrad turbine
libxxf86vm py-pyrosar turbomole
libyaml py-pyrsistent turnserver
libyogrt py-pysam tut
libzip py-pyscaf twm
libzmq py-pyscf tycho2
liggghts py-pyserial typhon
lighttpd py-pyshp typhonio
ligra py-pyside uchardet
likwid py-pyside2 ucx
linkphase3 py-pysmartdl udunits
linsys-v py-pysocks ufo-core
linux-headers py-pysolar ufo-filters
linux-pam py-pyspark umap
listres py-pysqlite umoci
lizard py-pytailf umpire
lksctp-tools py-pytest unblur
llvm py-pytest-cache uncrustify
llvm-amdgpu py-pytest-check-links unibilium
llvm-openmp py-pytest-cov unifdef
llvm-openmp-ompt py-pytest-flake8 unifyfs
lm-sensors py-pytest-forked unison
lmbench py-pytest-httpbin units
lmdb py-pytest-isort unittest-cpp
lmod py-pytest-mock universal-ctags
lndir py-pytest-mypy unixodbc
log4c py-pytest-pep8 unqlite
log4cplus py-pytest-runner unrar
log4cpp py-pytest-xdist unuran
log4cxx py-python-daemon unzip
logrotate py-python-dateutil upcxx
logstash py-python-docs-theme uqtk
loki py-python-editor uriparser
looptools py-python-engineio usbutils
lordec py-python-fmask usearch
lrslib py-python-gitlab userspace-rcu
lrzip py-python-igraph utf8proc
lsf py-python-jenkins util-linux
lshw py-python-json-logger util-macros
lsof py-python-ldap uuid
lsscsi py-python-levenshtein uvw
ltp py-python-logstash valgrind
ltr-retriever py-python-lzo vampirtrace
ltrace py-python-magic vardictjava
lua py-python-mapnik variorum
lua-bitlib py-python-meep varnish-cache
lua-lpeg py-python-memcached varscan
lua-luafilesystem py-python-oauth2 vasp
lua-luajit py-python-rapidjson vbfnlo
lua-luaposix py-python-slugify vc
lua-mpack py-python-socketio vcftools
lucene py-python-subunit vcsh
luit py-python-swiftclient vdt
lulesh py-python-utils veccore
lumpy-sv py-pythonqwt vecgeom
lustre py-pytimeparse veclibfort
lvarray py-pytools vegas2
lvm2 py-pytorch-gradual-warmup-lr veloc
lwgrp py-pytz velvet
lwm2 py-pyudev velvetoptimiser
lxc py-pyugrid verilator
lynx py-pyutilib verrou
lz4 py-pyvcf vesta
lzma py-pywavelets vgm
lzo py-pywcs videoproto
lzop py-pyyaml viennarna
m4 py-pyzmq viewres
macsio py-qtawesome vifi
mad-numdiff py-qtconsole vigra
madgraph5amc py-qtpy vim
mafft py-quantities virtualgl
magics py-quast visit
magma py-queryablelist vizglow
mahout py-radical-utils vmatch
makedepend py-ranger-fm vmc
maker py-rasterio vmd
mallocmc py-ratelim volk
maloc py-raven voropp
man-db py-ray votca-csg
manta py-rbtools votca-csg-tutorials
mapnik py-rdflib votca-csgapps
mapserver py-readme-renderer votca-ctp
maq py-recommonmark votca-tools
margo py-redis votca-xtp
mariadb py-regex vpfft
mariadb-c-client py-reportlab vpic
mark py-repoze-lru vsearch
masa py-reproject vsftpd
masurca py-requests vt
mathematica py-requests-futures vtable-dumper
matio py-requests-mock vtk
matlab py-requests-oauthlib vtk-h
maven py-requests-toolbelt vtk-m
maverick py-resampy vvtest
mawk py-restview wannier90
mbdyn py-resultsfile warpx
mbedtls py-retrying watch
mc py-rfc3986 wayland
mcl py-rios wcs
mcpp py-rise wcslib
mcutils py-rmm webbench
mdtest py-rnacocktail weechat
med py-robotframework weighttp
meep py-rope wget
mefit py-rpy2 wgsim
megadock py-rq which
megahit py-rsa whizard
memaxes py-rseqc windowswmproto
memcached py-rtree wireshark
meme py-ruamel-ordereddict wonton
memkind py-ruamel-yaml wordnet
memsurfer py-ruamel-yaml-clib workrave
memtester py-s3cmd wps
meraculous py-s3transfer wrf
mercurial py-sacremoses wrk
mercury py-saga-python wsmancli
mesa py-sanic wt
mesa-demos py-scandir wtdbg2
mesa-glu py-scientificpython wxpropgrid
mesa18 py-scikit-build wxwidgets
meshkit py-scikit-image x11perf
meson py-scikit-learn xabclib
mesquite py-scikit-optimize xapian-core
metabat py-scipy xauth
metall py-scoop xbacklight
metaphysicl py-scp xbiff
metis py-scs xbitmaps
mfem py-seaborn xbraid
mg py-secretstorage xcalc
mgis py-selenium xcb-demo
microbiomeutil py-semantic-version xcb-proto
migraphx py-semver xcb-util
migrate py-send2trash xcb-util-cursor
mii py-sentencepiece xcb-util-errors
minced py-sentry-sdk xcb-util-image
mindthegap py-seriate xcb-util-keysyms
miniaero py-setproctitle xcb-util-renderutil
miniamr py-setuptools xcb-util-wm
miniasm py-setuptools-git xcb-util-xrm
miniconda2 py-setuptools-rust xcfun
miniconda3 py-setuptools-scm xclip
minife py-setuptools-scm-git-archive xclipboard
miniforge3 py-sfepy xclock
minigan py-sgp4 xcmiscproto
minighost py-sh xcmsdb
minigmg py-shapely xcompmgr
minimap2 py-shiboken xconsole
minimd py-shortuuid xcursor-themes
minio py-shroud xcursorgen
miniqmc py-simplegeneric xdbedizzy
minisign py-simplejson xdelta
minismac2d py-simplekml xditview
minitri py-singledispatch xdm
minivite py-sip xdmf3
minixyce py-six xdotool
minizip py-slepc4py xdpyinfo
minuit py-slurm-pipeline xdriinfo
miopen-hip py-smart-open xedit
miopen-opencl py-smmap xerces-c
miopengemm py-snappy xeus
mira py-sncosmo xev
miranda py-sniffio xextproto
mirdeep2 py-snowballstemmer xeyes
mitofates py-snuggs xf86bigfontproto
mitos py-sonlib xf86dga
mivisionx py-sortedcontainers xf86dgaproto
mixcr py-soundfile xf86driproto
mkfontdir py-soupsieve xf86miscproto
mkfontscale py-spacy xf86rushproto
mlhka py-spacy-models-en-core-web-sm xf86vidmodeproto
mlocate py-spacy-models-en-vectors-web-lg xfd
mlperf-deepcam py-spatialist xfindproxy
mmg py-spatialite xfontsel
moab py-spdlog xfs
modern-wheel py-spectra xfsinfo
modylas py-spefile xfsprogs
mofem-cephas py-spglib xfwp
mofem-fracture-module py-sphinx xgamma
mofem-minimal-surface-equation py-sphinx-bootstrap-theme xgboost
mofem-users-modules py-sphinx-copybutton xgc
mokutil py-sphinx-gallery xhmm
molcas py-sphinx-rtd-theme xhost
molden py-sphinxautomodapi xineramaproto
mongo-c-driver py-sphinxcontrib-applehelp xinit
mongo-cxx-driver py-sphinxcontrib-bibtex xinput
mongodb-async-driver py-sphinxcontrib-devhelp xios
mono py-sphinxcontrib-htmlhelp xkbcomp
montage py-sphinxcontrib-issuetracker xkbdata
moosefs py-sphinxcontrib-jsmath xkbevd
moreutils py-sphinxcontrib-mermaid xkbprint
mosh py-sphinxcontrib-programoutput xkbutils
mothur py-sphinxcontrib-qthelp xkeyboard-config
motif py-sphinxcontrib-serializinghtml xkill
motioncor2 py-sphinxcontrib-trio xload
mount-point-attributes py-sphinxcontrib-websupport xlogo
mozjs py-spyder xlsatoms
mpark-variant py-spykeutils xlsclients
mpc py-sqlalchemy xlsfonts
mpdecimal py-sqlalchemy-utils xmag
mpe2 py-sqlparse xman
mpest py-srsly xmessage
mpfr py-sshtunnel xmh
mpi-bash py-statsmodels xmlf90
mpich py-stdlib-list xmlrpc-c
mpifileutils py-stestr xmlto
mpilander py-stevedore xmodmap
mpileaks py-stopit xmore
mpip py-storm xorg-cf-files
mpir py-stratify xorg-docs
mpix-launch-swift py-stsci-distutils xorg-gtest
mpt py-subprocess32 xorg-server
mrbayes py-subrosa xorg-sgml-doctools
mrbench py-svgpathtools xphelloworld
mrchem py-svgwrite xplor-nih
mrcpp py-symengine xplsprinters
mrnet py-symfit xpmem
mrtrix3 py-sympy xpr
mscgen py-syned xprehashprinterlist
msgpack-c py-systemd-python xprop
mshadow py-tables xproto
msmc py-tabulate xproxymanagementprotocol
msmc2 py-tap-py xqilla
mstk py-tatsu xrandr
mt-metis py-tblib xrdb
multitail py-tempora xrefresh
multitime py-tensorboard xrootd
multiverso py-tensorboard-plugin-wit xrx
mumax py-tensorboardx xsbench
mummer py-tensorflow xscope
mummer4 py-tensorflow-estimator xsd
mumps py-termcolor xsdk
munge py-terminado xsdk-examples
muparser py-testinfra xsdktrilinos
muscle py-testpath xset
muse py-testrepository xsetmode
musl py-testresources xsetpointer
muster py-testscenarios xsetroot
mutationpp py-testtools xsimd
mvapich2 py-tetoolkit xsm
mvapich2-gdr py-text-unidecode xstdcmap
mvapich2x py-textblob xtensor
mxm py-texttable xtensor-python
mxml py-tfdlpack xterm
mxnet py-theano xtl
mysql py-thinc xtrans
nacos py-thirdorder xtrap
nag py-threadpoolctl xts
nalu py-tifffile xvidtune
nalu-wind py-tinyarray xvinfo
namd py-tokenizers xwd
nano py-toml xwininfo
nanoflann py-tomlkit xwud
nanomsg py-tomopy xxhash
nanopb py-toolz xz
nasm py-torch yajl
nauty py-torch-cluster yambo
nbdkit py-torch-geometric yaml-cpp
ncbi-magicblast py-torch-nvidia-apex yara
ncbi-rmblastn py-torch-scatter yarn
ncbi-toolkit py-torch-sparse yasm
nccl py-torch-spline-conv ycsb
nccl-tests py-torchaudio yoda
nccmp py-torchfile yorick
ncdu py-torchsummary z-checker
ncftp py-torchtext z3
ncl py-torchvision zabbix
nco py-tornado zfp
ncompress py-tox zfs
ncurses py-tpot zip
ncview py-tqdm zipkin
ndiff py-traceback2 zlib
nek5000 py-traitlets zoltan
nekbone py-traits zookeeper
nekcem py-traitsui zookeeper-benchmark
nektar py-transformers zsh
nektools py-treehash zstd
neo4j py-tuiview zziplib
neovim py-twine None
nest py-twisted None

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
8.10.3, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Link Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.1.4, 2.0.2, 1.5.2
Build Dependencies:
autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
master, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Link Dependencies:
cuda, boost, dd4hep, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 0.9.2, 0.9.1
Build Dependencies:
exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, python, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0, xsdk-0.2.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
cuda, cmake, mpi, nccl, hwloc, cub, ninja
Link Dependencies:
cuda, mpi, nccl, hwloc, cub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-setuptools, py-coilmq
Link Dependencies:
python
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
18.20, 18.19, 16.16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. Note: The version number is composed of the Amber version (major) and the tools version (minor). A manual download is required for both Amber and Amber tools. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

amdblis

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
blas
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdscalapack

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
develop, master, 0.1.0
Build Dependencies:
numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Link Dependencies:
blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind. AMP can be used to build powerful and flexible multi-physics simulation algorithms from lightweight operator, solver, linear algebra, material database, discretization, and meshing components. The AMP design is meant to enable existing investments in application codes to be leveraged without having to adopt dramatically different data structures while developing new computational science applications. Application components are represented as discrete mathematical operators that only require a minimal interface and through operator composition the incremental development of complex parallel applications is enabled. AMP is meant to allow application domain scientists, computer scientists and mathematicians to simulate, collaborate, and conduct research on various aspects of massively parallel simulation algorithms.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amrex

Homepage:
Spack package:
Versions:
develop, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
cmake, mpi, sundials, cuda, python
Link Dependencies:
mpi, sundials, cuda
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
python, java
Link Dependencies:
python
Run Dependencies:
java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : http://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, mesa, py-setuptools, python, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, rocm-device-libs, hsakmt-roct, hsa-rocr-dev, comgr
Link Dependencies:
mesa, elfutils, libffi
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake, binutils, boost, activeharmony, ompt-openmp
Link Dependencies:
binutils, boost, activeharmony, ompt-openmp
Description:
Autonomic Performance Environment for eXascale (APEX).

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
0.4, 0.2
Build Dependencies:
cmake, cuda, mpi, libunwind, python, py-mpi4py, py-sphinx
Link Dependencies:
cuda, mpi, libunwind, python
Run Dependencies:
py-mpi4py
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.0
Build Dependencies:
m4, autoconf, automake, libtool, valgrind
Link Dependencies:
valgrind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

argtable

Homepage:
Spack package:
Versions:
2-13
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm-forge

Homepage:
Spack package:
Versions:
19.0.4-19.0.4-Ubuntu-16.04-x86_64, 19.0.4-Ubuntu-16.04-aarch64, 19.0.4-Ubuntu-14.04-x86_64, 19.0.4-Suse-15-x86_64, 19.0.4-Suse-12-x86_64, 19.0.4-Suse-12-aarch64, 19.0.4-Suse-11-x86_64, 19.0.4-Redhat-7.4-aarch64, 19.0.4-Redhat-7.2-ppc64le, 19.0.4-Redhat-7.0-x86_64, 19.0.4-Redhat-6.0-x86_64, 19.0.3-Ubuntu-16.04-x86_64, 19.0.3-Ubuntu-16.04-aarch64, 19.0.3-Ubuntu-14.04-x86_64, 19.0.3-Suse-12-x86_64, 19.0.3-Suse-12-aarch64, 19.0.3-Suse-11-x86_64, 19.0.3-Redhat-7.4-aarch64, 19.0.3-Redhat-7.2-ppc64le, 19.0.3-Redhat-7.0-x86_64, 19.0.3-Redhat-6.0-x86_64
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray
Run Dependencies:
py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
8.6.9
Build Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl
Link Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.0.3, 9.0.2
Build Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
aspell
Link Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
aspell
Link Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
aspell
Link Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
4.0.1
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake
Link Dependencies:
comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Run Dependencies:
perl
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.69, 2.62, 2.59, 2.13
Build Dependencies:
m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Link Dependencies:
python
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Link Dependencies:
python
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.16.1
Build Dependencies:
m4, autoconf, automake, libtool, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
glib, libuuid, popt
Link Dependencies:
glib, libuuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack, python
Run Dependencies:
py-numpy, py-matplotlib
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

bash

Homepage:
Spack package:
Versions:
5.0, 4.4, 4.3
Build Dependencies:
ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
util-linux, gettext, pkgconfig
Link Dependencies:
util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.0, 7.6.0, 7.4.4
Build Dependencies:
libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, python
Link Dependencies:
zlib
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Description:
Oracle Berkeley DB

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
autoconf, automake, libtool, m4, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
diffutils, m4, perl, help2man
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blaspp

Homepage:
Spack package:
Versions:
master, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
cuda, cmake, blas, openblas
Link Dependencies:
cuda, blas, openblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, zlib
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib
Run Dependencies:
py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Description:
A Binary Decision Diagram library.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-setuptools
Link Dependencies:
python
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
python, blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

cabana

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, kokkos-legacy, kokkos, mpi
Link Dependencies:
kokkos-legacy, kokkos, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cmake, boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
cairo, libsigcpp
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cmake, adiak, dyninst, papi, libpfm4, mpi, unwind, sosflow, python
Link Dependencies:
adiak, dyninst, papi, libpfm4, mpi, unwind, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
cuda, cmake, llvm-amdgpu, hip
Link Dependencies:
cuda, llvm-amdgpu, hip
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack, python, matlab
Run Dependencies:
py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.7.0
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

casacore

Homepage:
Spack package:
Versions:
3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0-alpha2, 4.0-alpha1, 3.11.6, 3.11.5
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ use case library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks.

catch2

Homepage:
Spack package:
Versions:
master, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elf, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains the Krell Institute contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package:
Versions:
3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
gperf, libxslt, zlib
Link Dependencies:
gperf, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.5, 2.4
Build Dependencies:
cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94h
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
1.9.9, 1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw, magics, libuuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw, magics, libuuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
3.0.0, 2.0.0, 1.0.0
Build Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
3.450, 3.420, 3.410, 3.370
Build Dependencies:
curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
0.7.0
Build Dependencies:
ncurses, readline
Link Dependencies:
ncurses, readline
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
autoconf, automake, libtool, m4, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cget

Homepage:
Spack package:
Versions:
0.1.9
Build Dependencies:
python, py-setuptools, py-six, py-click, py-subprocess32
Link Dependencies:
python
Run Dependencies:
python, py-six, py-click, py-subprocess32
Description:
Cmake package retrieval.

cgl

Homepage:
Spack package:
Versions:
0.60.3
Build Dependencies:
coinutils, osi, clp
Link Dependencies:
coinutils, osi, clp
Description:
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chai

Homepage:
Spack package:
Versions:
develop, master, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
cuda, cmake, umpire, raja
Link Dependencies:
cuda, umpire, raja
Description:
Copy-hiding array interface for data migration between memory spaces

changa

Homepage:
Spack package:
Versions:
master, 3.4
Build Dependencies:
charmpp
Link Dependencies:
charmpp
Description:
ChaNGa (Charm N-body GrAvity solver) is a code to perform collisionless N-body simulations. It can perform cosmological simulations with periodic boundary conditions in comoving coordinates or simulations of isolated stellar systems. It also can include hydrodynamics using the Smooth Particle Hydrodynamics (SPH) technique. It uses a Barnes-Hut tree to calculate gravity, with hexadecapole expansion of nodes and Ewald summation for periodic forces. Timestepping is done with a leapfrog integrator with individual timesteps for each particle.

channelflow

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, eigen, fftw, mpi, hdf5, netcdf-c, boost
Link Dependencies:
eigen, fftw, mpi, hdf5, netcdf-c, boost
Description:
Channelflow is a software system for numerical analysis of the incompressible fluid flow in channel geometries, written in C++.

chapel

Homepage:
Spack package:
Versions:
1.20.0, 1.19.0, 1.18.0
Description:
Chapel is a modern programming language that is parallel, productive, portable, scalable and open-source.

charliecloud

Homepage:
Spack package:
Versions:
master, 0.19, 0.18
Build Dependencies:
m4, autoconf, automake, libtool, rsync, py-sphinx, py-sphinx-rtd-theme
Run Dependencies:
python, py-lark-parser, py-requests
Test Dependencies:
bats
Description:
Lightweight user-defined software stacks for HPC.

charmpp

Homepage:
Spack package:
Versions:
develop, 6.10.2, 6.10.1, 6.10.0, 6.9.0, 6.8.2, 6.8.1, 6.8.0, 6.7.1, 6.7.0, 6.6.1, 6.6.0, 6.5.1
Build Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Link Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Description:
Charm++ is a parallel programming framework in C++ supported by an adaptive runtime system, which enhances user productivity and allows programs to run portably from small multicore computers (your laptop) to the largest supercomputers.

chatterbug

Homepage:
Spack package:
Versions:
develop, 1.0
Build Dependencies:
mpi, scorep
Link Dependencies:
mpi, scorep
Description:
A suite of communication-intensive proxy applications that mimic commonly found communication patterns in HPC codes. These codes can be used as synthetic codes for benchmarking, or for trace generation using Score-P / OTF2.

check

Homepage:
Spack package:
Versions:
0.12.0, 0.11.0, 0.10.0
Description:
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

chgcentre

Homepage:
Spack package:
Versions:
1.6
Build Dependencies:
cmake, casacore, gsl
Link Dependencies:
casacore, gsl
Description:
The chgcentre tool can be used to change the phase centre of a measurement set.

chill

Homepage:
Spack package:
Versions:
master, 0.3
Build Dependencies:
boost, rose, autoconf, automake, libtool, m4, iegenlib, bison, flex, python, isl, gmp
Link Dependencies:
python
Run Dependencies:
rose, iegenlib
Description:
A polyheadral compiler for autotuning

chlorop

Homepage:
Spack package:
Versions:
1.1
Run Dependencies:
awk
Description:
Chlorop predicts the presence of chloroplast transit peptides in protein sequences and the location of potential cTP cleavage sites. You will need to obtain the tarball by visiting the URL and completing the form. You can then either run spack install with the tarball in the directory, or add it to a mirror. You will need to set the CHLOROTMP environment variable to the full path of the directory you want chlorop to use as a temporary directory.

chombo

Homepage:
Spack package:
Versions:
develop, 3.2
Build Dependencies:
blas, lapack, gmake, mpi, hdf5
Link Dependencies:
blas, lapack, mpi, hdf5
Description:
The Chombo package provides a set of tools for implementing finite difference and finite-volume methods for the solution of partial differential equations on block-structured adaptively refined logically rectangular (i.e. Cartesian) grids.

chrony

Homepage:
Spack package:
Versions:
3.5.1, 3.5, 3.4, 3.3
Build Dependencies:
ruby-asciidoctor
Link Dependencies:
ruby-asciidoctor
Description:
chrony is a versatile implementation of the Network Time Protocol (NTP). It can synchronise the system clock with NTP servers, reference clocks(e.g. GPS receiver), and manual input using wristwatch and keyboard.

chrpath

Homepage:
Spack package:
Versions:
0.16
Description:
chrpath: Modifies the dynamic library load path (rpath and runpath) of compiled programs and libraries.

cinch

Homepage:
Spack package:
Versions:
master, 1.0
Description:
Cinch is a set of utilities and configuration options designed to make cmake builds easy to use and manage.

cistem

Homepage:
Spack package:
Versions:
1.0.0-beta
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

citcoms

Homepage:
Spack package:
Versions:
master, 3.3.1, 3.2.0
Build Dependencies:
mpi, zlib, automake, autoconf, libtool, m4, hc, cuda, hdf5
Link Dependencies:
mpi, zlib, hc, cuda, hdf5
Run Dependencies:
python
Description:
CitcomS is a finite element code designed to solve compressible thermochemical convection problems relevant to Earth's mantle.

cityhash

Homepage:
Spack package:
Versions:
master, 2013-07-31
Description:
CityHash, a family of hash functions for strings.

ck

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
CK calculates class-level and metric-level code metrics in Java projects by means of static analysis (i.e. no need for compiled code).

clamav

Homepage:
Spack package:
Versions:
0.101.2
Build Dependencies:
pkgconfig, json-c, openssl, pcre, yara, zlib, bzip2
Link Dependencies:
json-c, openssl, pcre, yara, zlib, bzip2, curl
Description:
Open source antivirus engine for detecting trojans, viruses, malware & other malicious threats.

clamr

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, mpi, mpe
Link Dependencies:
cmake, mpi, mpe
Description:
The CLAMR code is a cell-based adaptive mesh refinement (AMR) mini-app developed as a testbed for hybrid algorithm development using MPI and OpenCL GPU code.

clapack

Homepage:
Spack package:
Versions:
3.2.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CLAPACK is a f2c'ed version of LAPACK. The CLAPACK library was built using a Fortran to C conversion utility called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain C code, and then modified to improve readability. CLAPACK's goal is to provide LAPACK for someone who does not have access to a Fortran compiler.

clara

Homepage:
Spack package:
Versions:
1.1.5, 1.1.4, 1.1.3, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
A simple to use, composable, command line parser for C++ 11 and beyond.

claw

Homepage:
Spack package:
Versions:
master, 2.0.2, 2.0.1, 2.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0
Build Dependencies:
cmake, ant, bison, flex, java, libxml2
Link Dependencies:
java, libxml2
Description:
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran. From a single source code, it generates architecture specific code decorated with OpenMP or OpenACC

cleaveland4

Homepage:
Spack package:
Versions:
4.4
Build Dependencies:
perl, perl-math-cdf, bowtie, viennarna, r, samtools
Link Dependencies:
bowtie, viennarna, samtools
Run Dependencies:
perl, perl-math-cdf, r
Description:
CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

cleverleaf

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, samrai, hdf5, boost
Link Dependencies:
samrai, hdf5, boost
Description:
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National Laboratory. The primary goal of CleverLeaf is to evaluate the application of AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.

clfft

Homepage:
Spack package:
Versions:
2.12.2
Build Dependencies:
cmake, opencl, boost
Link Dependencies:
opencl, boost
Description:
a software library containing FFT functions written in OpenCL

clhep

Homepage:
Spack package:
Versions:
2.4.1.3, 2.4.1.2, 2.4.1.0, 2.4.0.4, 2.4.0.2, 2.4.0.1, 2.4.0.0, 2.3.4.6, 2.3.4.5, 2.3.4.4, 2.3.4.3, 2.3.4.2, 2.3.3.2, 2.3.3.1, 2.3.3.0, 2.3.2.2, 2.3.1.1, 2.3.1.0, 2.3.0.0, 2.2.0.8, 2.2.0.5, 2.2.0.4
Build Dependencies:
cmake
Description:
CLHEP is a C++ Class Library for High Energy Physics.

clinfo

Homepage:
Spack package:
Versions:
2.2.18.04.06
Build Dependencies:
opencl
Link Dependencies:
opencl
Description:
Print all known information about all available OpenCL platforms and devices in the system.

clingo

Homepage:
Spack package:
Versions:
master, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python
Link Dependencies:
python
Run Dependencies:
python
Description:
Clingo: A grounder and solver for logic programs Clingo is part of the Potassco project for Answer Set Programming (ASP). ASP offers a simple and powerful modeling language to describe combinatorial problems as logic programs. The clingo system then takes such a logic program and computes answer sets representing solutions to the given problem.

cln

Homepage:
Spack package:
Versions:
master, 1.3.6, 1.3.5, 1.3.4, 1.3.3, 1.3.2, 1.3.1, 1.3.0, 1.2.2, 1.2.1, 1.2.0
Build Dependencies:
autoconf, automake, libtool, m4, gmp, gettext
Link Dependencies:
gmp
Description:
CLN is a library for efficient computations with all kinds of numbers in arbitrary precision. It features number classes for unlimited length integers, rationals, arbitrary precision floating point numbers and much more.

cloc

Homepage:
Spack package:
Versions:
1.84, 1.80, 1.74
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Count, or compute differences of, physical lines of source code in the given files (may be archives such as compressed tarballs or zip files) and/or recursively below the given directories.

cloog

Homepage:
Spack package:
Versions:
0.18.1, 0.18.0, 0.17.0
Build Dependencies:
gmp, isl
Link Dependencies:
gmp, isl
Description:
CLooG is a free software and library to generate code for scanning Z-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that reaches each integral point of one or more parameterized polyhedra.

cloverleaf

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
mpi, cuda
Link Dependencies:
mpi, cuda
Description:
Proxy Application. CloverLeaf is a miniapp that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

cloverleaf3d

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CloverLeaf3D is 3D version of the CloverLeaf mini- app. CloverLeaf is a mini-app that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

clp

Homepage:
Spack package:
Versions:
1.17.6, 1.17.4, 1.16.11
Build Dependencies:
coinutils, osi
Link Dependencies:
coinutils, osi
Description:
Clp (Coin-or linear programming) is an open-source linear programming solver written in C++.

clustal-omega

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
argtable
Link Dependencies:
argtable
Description:
Clustal Omega: the last alignment program you'll ever need.

clustalw

Homepage:
Spack package:
Versions:
2.1
Description:
Multiple alignment of nucleic acid and protein sequences.

cmake

Homepage:
Spack package:
Versions:
3.18.4, 3.18.3, 3.18.2, 3.18.1, 3.18.0, 3.17.4, 3.17.3, 3.17.1, 3.17.0, 3.16.8, 3.16.7, 3.16.6, 3.16.5, 3.16.4, 3.16.3, 3.16.2, 3.16.1, 3.16.0, 3.15.7, 3.15.6, 3.15.5, 3.15.4, 3.15.3, 3.15.2, 3.15.1, 3.15.0, 3.14.7, 3.14.6, 3.14.5, 3.14.4, 3.14.3, 3.14.2, 3.14.1, 3.14.0, 3.13.5, 3.13.4, 3.13.3, 3.13.2, 3.13.1, 3.13.0, 3.12.4, 3.12.3, 3.12.2, 3.12.1, 3.12.0, 3.11.4, 3.11.3, 3.11.2, 3.11.1, 3.11.0, 3.10.3, 3.10.2, 3.10.1, 3.10.0, 3.9.6, 3.9.4, 3.9.2, 3.9.0, 3.8.2, 3.8.1, 3.8.0, 3.7.2, 3.7.1, 3.6.1, 3.6.0, 3.5.2, 3.5.1, 3.5.0, 3.4.3, 3.4.0, 3.3.1, 3.1.0, 3.0.2, 2.8.10.2
Build Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, python, py-sphinx, openssl, ncurses
Link Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, openssl, ncurses
Description:
A cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

cmaq

Homepage:
Spack package:
Versions:
5.3.1, 5.3
Description:
Code base for the U.S. EPA's Community Multiscale Air Quality Model (CMAQ).

cmark

Homepage:
Spack package:
Versions:
0.29.0, 0.28.3, 0.28.2, 0.28.1, 0.28.0, 0.27.1
Build Dependencies:
cmake
Description:
cmark is the C reference implementation of CommonMark, a rationalized version of Markdown syntax with a spec.

cminpack

Homepage:
Spack package:
Versions:
master, 1.3.6
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
This is a C version of the minpack minimization package. Minpack includes software for solving nonlinear equations and nonlinear least squares problems.

cmocka

Homepage:
Spack package:
Versions:
1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
Unit-testing framework in pure C

cmockery

Homepage:
Spack package:
Versions:
0.1.2, 0.1.1, 0.1.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
A lightweight library to simplify and generalize the process of writing unit tests for C applications.

cmor

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2
Build Dependencies:
uuid, netcdf-c, udunits, hdf5, python, py-numpy
Link Dependencies:
uuid, netcdf-c, udunits, hdf5, python
Run Dependencies:
py-numpy
Description:
Climate Model Output Rewriter is used to produce CF-compliant netCDF files. The structure of the files created by the library and the metadata they contain fulfill the requirements of many of the climate community's standard model experiments.

cnmem

Homepage:
Spack package:
Versions:
git
Build Dependencies:
cmake
Description:
CNMem mempool for CUDA devices

cnpy

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
cnpy: library to read/write .npy and .npz files in C/C++.

cntk

Homepage:
Spack package:
Versions:
master, 2.0
Build Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Link Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Description:
The Microsoft Cognitive Toolkit is a unified deep-learning toolkit that describes neural networks as a series of computational steps via a directed graph.

cntk1bitsgd

Homepage:
Spack package:
Versions:
master, c8b77d
Description:
CNTK1bitSGD is the header-only 1-bit stochastic gradient descent (1bit- SGD) library for the Computational Network Toolkit (CNTK).

cnvnator

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Link Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Description:
A tool for CNV discovery and genotyping from depth-of-coverage by mapped reads.

codar-cheetah

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0, 0.5
Build Dependencies:
python
Link Dependencies:
python
Run Dependencies:
python
Description:
CODAR Cheetah: The CODAR Experiment Harness for Exascale science applications.

code-server

Homepage:
Spack package:
Versions:
3.4.1, 3.1.1, 3.1.0
Build Dependencies:
git
Link Dependencies:
git
Description:
code-server is VS Code running on a remote server, accessible through the browser.

codec2

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
cmake
Description:
Open source speech codec designed for communications quality speech between 450 and 3200 bit/s. The main application is low bandwidth HF/VHF digital radio.

codes

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0
Build Dependencies:
autoconf, automake, libtool, m4, pkgconfig, bison, flex, mpi, ross, sst-dumpi
Link Dependencies:
mpi, ross, sst-dumpi
Description:
CO-Design of multi-layer Exascale Storage (CODES) simulation framework

coevp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
mpi, silo, flann, lapack
Link Dependencies:
mpi, silo, flann, lapack
Description:
CoEVP is a scale-bridging proxy application for embedded viscoplasticity applications. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. Due to the size and complexity of the studied models, as well as restrictions on distribution, the currently available LULESH proxy application provides the coarse-scale model implementation and the ASPA proxy application provides the adaptive sampling support.

cohmm

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
gnuplot
Link Dependencies:
gnuplot
Description:
An anticipated important use-case for next-generation supercomputing is multiscale modeling, in which continuum equations for large-scale material deformation are augmented with high-fidelity, fine-scale simulations that provide constitutive data on demand.

coin3d

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.0.0
Build Dependencies:
boost, doxygen, perl
Link Dependencies:
openglu, opengl, libsm, libxext, libice, libuuid, libxcb, libxau
Description:
Coin is an OpenGL-based, 3D graphics library that has its roots in the Open Inventor 2.1 API, which Coin still is compatible with.

coinhsl

Homepage:
Spack package:
Versions:
2019.05.21, 2015.06.23, 2014.01.17, 2014.01.10
Build Dependencies:
blas
Link Dependencies:
blas
Description:
CoinHSL is a collection of linear algebra libraries (KB22, MA27, MA28, MA54, MA57, MA64, MA77, MA86, MA97, MC19, MC34, MC64, MC68, MC69, MC78, MC80, OF01, ZB01, ZB11) bundled for use with IPOPT and other applications that use these HSL routines. Note: CoinHSL is licensed software. You will need to request a license from Research Councils UK and download a .tar.gz archive of CoinHSL yourself. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

coinutils

Homepage:
Spack package:
Versions:
2.11.4
Description:
CoinUtils is an open-source collection of classes and helper functions that are generally useful to multiple COIN-OR projects.

collectd

Homepage:
Spack package:
Versions:
5.11.0, 5.10.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
The system statistics collection daemon.

collier

Homepage:
Spack package:
Versions:
1.2.5, 1.2.4, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1, 1.0
Build Dependencies:
cmake
Description:
COLLIER: A Complex One-Loop LIbrary with Extended Regularizations

colm

Homepage:
Spack package:
Versions:
0.12.0
Description:
Colm Programming Language Colm is a programming language designed for the analysis and transformation of computer languages. Colm is influenced primarily by TXL. It is in the family of program transformation languages.

colordiff

Homepage:
Spack package:
Versions:
1.0.19, 1.0.18
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Colorful diff utility.

comd

Homepage:
Spack package:
Versions:
develop, 1.1
Build Dependencies:
mpi, graphviz
Link Dependencies:
mpi, graphviz
Description:
CoMD is a reference implementation of classical molecular dynamics algorithms and workloads as used in materials science. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. New versions of CoMD will be released to incorporate the lessons learned from the co-design process.

comgr

Homepage:
Spack package:
Versions:
3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, llvm-amdgpu, rocm-device-libs, rocm-cmake
Link Dependencies:
zlib, z3, ncurses
Description:
This provides various Lightning Compiler related services. It currently contains one library, the Code Object Manager (Comgr)

commons-lang

Homepage:
Spack package:
Versions:
2.6, 2.4
Build Dependencies:
jdk
Link Dependencies:
jdk
Run Dependencies:
java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-lang3

Homepage:
Spack package:
Versions:
3.7
Build Dependencies:
jdk
Link Dependencies:
jdk
Run Dependencies:
java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-logging

Homepage:
Spack package:
Versions:
1.2, 1.1.3, 1.1.1
Build Dependencies:
jdk
Link Dependencies:
jdk
Run Dependencies:
java
Description:
When writing a library it is very useful to log information. However there are many logging implementations out there, and a library cannot impose the use of a particular one on the overall application that the library is a part of. The Logging package is an ultra-thin bridge between different logging implementations. A library that uses the commons-logging API can be used with any logging implementation at runtime. Commons-logging comes with support for a number of popular logging implementations, and writing adapters for others is a reasonably simple task.

compiz

Homepage:
Spack package:
Versions:
0.7.8
Build Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Link Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Description:
compiz - OpenGL window and compositing manager. Compiz is an OpenGL compositing manager that use GLX_EXT_texture_from_pixmap for binding redirected top-level windows to texture objects. It has a flexible plug- in system and it is designed to run well on most graphics hardware.

compositeproto

Homepage:
Spack package:
Versions:
0.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Composite Extension. This package contains header files and documentation for the composite extension. Library and server implementations are separate.

conda4aarch64

Homepage:
Spack package:
Versions:
1.0.0
Description:
Conda for aarch64

conduit

Homepage:
Spack package:
Versions:
master, 0.5.1, 0.5.0, 0.4.0, 0.3.1, 0.3.0, 0.2.1, 0.2.0
Build Dependencies:
cmake, python, py-numpy, py-mpi4py, hdf5, silo, adios, zfp, mpi, py-sphinx, py-sphinx-rtd-theme, doxygen
Link Dependencies:
python, hdf5, silo, adios, zfp, mpi, doxygen
Run Dependencies:
py-numpy, py-mpi4py
Description:
Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. It is used for data coupling between packages in-core, serialization, and I/O tasks.

connect-proxy

Homepage:
Spack package:
Versions:
1.105
Description:
`connect.c` is a simple relaying command to make network connection via SOCKS and https proxy

conserver

Homepage:
Spack package:
Versions:
8.2.5, 8.2.4, 8.2.3, 8.2.2, 8.2.1
Description:
Conserver is an application that allows multiple users to watch a serial console at the same time.

console-bridge

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0, 0.5.1, 0.5.0, 0.4.4, 0.4.3
Build Dependencies:
cmake
Description:
console_bridge is a ROS-independent, pure CMake (i.e. non-catkin and non-rosbuild package) that provides logging calls that mirror those found in rosconsole, but for applications that are not necessarily using ROS.

constype

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
pkgconfig, util-macros
Description:
constype prints on the standard output the Sun code for the type of display that the specified device is. It was originally written for SunOS, but has been ported to other SPARC OS'es and to Solaris on both SPARC & x86.

consul

Homepage:
Spack package:
Versions:
1.8.1, 1.8.0, 1.7.6
Build Dependencies:
go
Link Dependencies:
go
Description:
Consul is a distributed, highly available, and data center aware solution to connect and configure applications across dynamic, distributed infrastructure.

converge

Homepage:
Spack package:
Versions:
2.4.10, 2.3.23, 2.2.0, 2.1.0, 2.0.0
Build Dependencies:
mpi, openmpi
Link Dependencies:
mpi, openmpi
Description:
CONVERGE is a revolutionary computational fluid dynamics (CFD) program that eliminates the grid generation bottleneck from the simulation process. CONVERGE was developed by engine simulation experts and is straightforward to use for both engine and non-engine simulations. Unlike many CFD programs, CONVERGE automatically generates a perfectly orthogonal, structured grid at runtime based on simple, user-defined grid control parameters. This grid generation method completely eliminates the need to manually generate a grid. In addition, CONVERGE offers many other features to expedite the setup process and to ensure that your simulations are as computationally efficient as possible.

corenlp

Homepage:
Spack package:
Versions:
4.0.0
Build Dependencies:
ant
Description:
Stanford CoreNLP provides a set of human language technology tools. It can give the base forms of words, their parts of speech, whether they are names of companies, people, etc., normalize dates, times, and numeric quantities, mark up the structure of sentences in terms of phrases and syntactic dependencies, indicate which noun phrases refer to the same entities, indicate sentiment, extract particular or open-class relations between entity mentions, get the quotes people said, etc.

coreutils

Homepage:
Spack package:
Versions:
8.31, 8.30, 8.29, 8.26, 8.23
Description:
The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system.

corset

Homepage:
Spack package:
Versions:
1.06
Description:
Corset is a command-line software program to go from a de novo transcriptome assembly to gene-level counts.

cosbench

Homepage:
Spack package:
Versions:
0.4.2, 0.4.1.0, 0.4.0.1
Run Dependencies:
java, curl
Description:
COSBench is a benchmarking tool to measure the performance of Cloud Object Storage services. Object storage is an emerging technology that is different from traditional file systems (e.g., NFS) or block device systems (e.g., iSCSI). Amazon S3 and Openstack* swift are well-known object storage solutions

cosma

Homepage:
Spack package:
Versions:
master, 2.2.0, 2.0.7, 2.0.2
Build Dependencies:
cuda, cmake, mpi, blas, scalapack
Link Dependencies:
cuda, mpi, blas, scalapack
Description:
Distributed Communication-Optimal Matrix-Matrix Multiplication Library

cosmoflow-benchmark

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cuda, python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Link Dependencies:
cuda
Run Dependencies:
python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Description:
This is a an implementation of the CosmoFlow 3D convolutional neural network for benchmarking. It is written in TensorFlow with the Keras API and uses Horovod for distributed training.

cosmomc

Homepage:
Spack package:
Versions:
2016.11, 2016.06
Build Dependencies:
python, mpi, planck-likelihood, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Link Dependencies:
python, mpi, planck-likelihood
Run Dependencies:
python, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Description:
CosmoMC is a Fortran 2008 Markov-Chain Monte-Carlo (MCMC) engine for exploring cosmological parameter space, together with Fortran and python code for analysing Monte-Carlo samples and importance sampling (plus a suite of scripts for building grids of runs, plotting and presenting results).

cosp2

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CoSP2 represents a sparse linear algebra parallel algorithm for calculating the density matrix in electronic tructure theory. The algorithm is based on a recursive second-order Fermi- Operator expansion method (SP2) and is tailored for density functional based tight-binding calculations of non-metallic systems.

cotter

Homepage:
Spack package:
Versions:
master, 20190205
Build Dependencies:
cmake, erfa, pal, aoflagger
Link Dependencies:
erfa, pal, aoflagger
Description:
Andre Offringa's cotter pre-processing pipeline.

couchdb

Homepage:
Spack package:
Versions:
3.1.0, 3.0.1, 3.0.0
Build Dependencies:
icu4c, openssl, curl, node-js, mozjs, gmake, help2man, python, erlang
Link Dependencies:
icu4c, openssl, curl, node-js, mozjs
Run Dependencies:
python, erlang
Description:
A CouchDB server hosts named databases, which store documents. Each document is uniquely named in the database, and CouchDB provides a RESTful HTTP API for reading and updating (add, edit, delete) database documents.

cowsay

Homepage:
Spack package:
Versions:
3.04
Run Dependencies:
perl
Description:
A program that generates ASCII pictures of a cow with a message.

cp2k

Homepage:
Spack package:
Versions:
master, 7.1, 6.1, 5.1, 4.1, 3.0
Build Dependencies:
cuda, python, blas, lapack, fftw-api, libxsmm, pkgconfig, libint, libxc, mpi, scalapack, cosma, elpa, plumed, pexsi, sirius, py-numpy, wannier90
Link Dependencies:
cuda, blas, lapack, fftw-api, libxsmm, libint, libxc, mpi, scalapack, cosma, elpa, plumed, pexsi, sirius
Description:
CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems

cpio

Homepage:
Spack package:
Versions:
2.13
Description:
GNU cpio copies files into or out of a cpio or tar archive. The archive can be another file on the disk, a magnetic tape, or a pipe.

cpp-httplib

Homepage:
Spack package:
Versions:
0.5.9, 0.5.8, 0.5.7, 0.5.6, 0.5.5, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.4.2, 0.3.3, 0.2.6, 0.2.1
Build Dependencies:
cmake
Description:
A C++ header-only HTTP/HTTPS server and client library.

cppad

Homepage:
Spack package:
Versions:
develop, 20170114
Build Dependencies:
cmake
Description:
A Package for Differentiation of C++ Algorithms.

cppcheck

Homepage:
Spack package:
Versions:
2.1, 1.87, 1.81, 1.78, 1.72, 1.68
Run Dependencies:
py-pygments
Description:
A tool for static C/C++ code analysis.

cppgsl

Homepage:
Spack package:
Versions:
master, 2.1.0, 2.0.0, 1.0.0
Build Dependencies:
cmake
Description:
C++ Guideline Support Library

cpprestsdk

Homepage:
Spack package:
Versions:
2.10.16, 2.9.1
Build Dependencies:
cmake, boost, openssl
Link Dependencies:
boost, openssl
Description:
The C++ REST SDK is a Microsoft project for cloud-based client-server communication in native code using a modern asynchronous C++ API design. This project aims to help C++ developers connect to and interact with services.

cppunit

Homepage:
Spack package:
Versions:
1.14.0, 1.13.2
Description:
Obsolete Unit testing framework for C++

cppzmq

Homepage:
Spack package:
Versions:
master, 4.6.0, 4.5.0, 4.4.1, 4.4.0, 4.3.0, 4.2.3, 4.2.2
Build Dependencies:
cmake, libzmq
Link Dependencies:
libzmq
Description:
C++ binding for 0MQ

cpu-features

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake
Description:
A cross platform C99 library to get cpu features at runtime.

cpuinfo

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Description:
cpuinfo is a library to detect essential for performance optimization information about host CPU.

cquery

Homepage:
Spack package:
Versions:
2018-08-23
Build Dependencies:
cmake, llvm
Link Dependencies:
llvm
Description:
a C++ header-only library for Nearest Neighbor (NN) search wih KD-trees.

cracklib

Homepage:
Spack package:
Versions:
2.9.7, 2.9.6, 2.9.5
Build Dependencies:
python, gettext, fmt, zlib
Link Dependencies:
gettext, fmt, zlib
Run Dependencies:
python
Description:
CrackLib tests passwords to determine whether they match certain security-oriented characteristics, with the purpose of stopping users from choosing passwords that are easy to guess.

cradl

Homepage:
Spack package:
Versions:
master
Build Dependencies:
py-pandas, py-torch, py-torchvision, py-apex, py-gputil, py-matplotlib, py-mpi4py
Link Dependencies:
py-pandas, py-torch, py-torchvision, py-apex, py-gputil, py-matplotlib, py-mpi4py
Description:
The CRADL proxy application captured performance metrics during inference on data from multiphysics codes, specifically ALE hydrodynamics codes.

cram

Homepage:
Spack package:
Versions:
1.0.1
Build Dependencies:
cmake, python, mpi
Link Dependencies:
python, mpi
Description:
Cram runs many small MPI jobs inside one large MPI job.

cray-libsci

Homepage:
Spack package:
Versions:
20.06.1, 19.06.1, 18.12.1, 18.11.1.2, 16.11.1, 16.09.1, 16.07.1, 16.06.1, 16.03.1
Description:
The Cray Scientific Libraries package, LibSci, is a collection of numerical routines optimized for best performance on Cray systems.

cromwell

Homepage:
Spack package:
Versions:
44
Run Dependencies:
java
Description:
Cromwell is a Workflow Management System geared towards scientific workflows.

cromwell-womtool

Homepage:
Spack package:
Versions:
44
Run Dependencies:
java
Description:
Command line utilities for interacting with the Workflow Object Model (WOM).

cronie

Homepage:
Spack package:
Versions:
1.5.5
Description:
Cronie contains the standard UNIX daemon crond that runs specified programs at scheduled times and related tools.

cryptopp

Homepage:
Spack package:
Versions:
7.0.0, 6.1.0, 6.0.0, 5.6.5, 5.6.4, 5.6.3, 5.6.2, 5.6.1
Build Dependencies:
gmake
Description:
Crypto++ is an open-source C++ library of cryptographic schemes. The library supports a number of different cryptography algorithms, including authenticated encryption schemes (GCM, CCM), hash functions (SHA-1, SHA2), public-key encryption (RSA, DSA), and a few obsolete/historical encryption algorithms (MD5, Panama).

cryptsetup

Homepage:
Spack package:
Versions:
2.3.1, 2.2.3, 2.2.2, 2.2.1
Build Dependencies:
libuuid, lvm2, popt, json-c, util-linux, gettext, pkgconfig, autoconf, automake, libtool, m4, openssl
Link Dependencies:
libuuid, lvm2, popt, json-c, util-linux, gettext, openssl
Description:
Cryptsetup and LUKS - open-source disk encryption.

csa-c

Homepage:
Spack package:
Versions:
master
Description:
csa: Cubic Spline Approximation. csa is a C code for cubic spline approximation of 2D scattered data. It provides a C library and a command line utility csabathy.

cscope

Homepage:
Spack package:
Versions:
15.9, 15.8b
Build Dependencies:
ncurses, flex, bison, pkgconfig
Link Dependencies:
ncurses
Description:
Cscope is a developer's tool for browsing source code.

csdp

Homepage:
Spack package:
Versions:
6.1.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CSDP is a library of routines that implements a predictor corrector variant of the semidefinite programming algorithm of Helmberg, Rendl, Vanderbei, and Wolkowicz

ctffind

Homepage:
Spack package:
Versions:
4.1.8
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
Fast and accurate defocus estimation from electron micrographs.

ctpl

Homepage:
Spack package:
Versions:
0.3
Build Dependencies:
autoconf, automake, libtool, m4, gtk-doc, glib
Link Dependencies:
gtk-doc, glib
Description:
CTPL is a template engine library written in C and distributed under the terms of the GNU GPL.

ctre

Homepage:
Spack package:
Versions:
master, 2.8.4, 2.8.3, 2.8.2, 2.8.1, 2.8, 2.7, 2.6.4, 2.6.3, 2.6.2, 2.6.1
Build Dependencies:
cmake
Description:
Compile time regular expressions for C++

cub

Homepage:
Spack package:
Versions:
1.9.10, 1.9.9, 1.9.8-1, 1.9.8, 1.8.0, 1.7.5, 1.7.4, 1.7.3, 1.7.2, 1.7.1
Description:
CUB is a C++ header library of cooperative threadblock primitives and other utilities for CUDA kernel programming.

cube

Homepage:
Spack package:
Versions:
4.5, 4.4.4, 4.4.3, 4.4.2, 4.4, 4.3.5, 4.3.4, 4.3.3, 4.2.3
Build Dependencies:
cubelib, pkgconfig, dbus, zlib, qt
Link Dependencies:
cubelib, dbus, zlib, qt
Description:
Cube the profile viewer for Score-P and Scalasca profiles. It displays a multi-dimensional performance space consisting of the dimensions: - performance metric - call path - system resource

cubelib

Homepage:
Spack package:
Versions:
4.5, 4.4.4, 4.4.3, 4.4.2, 4.4
Build Dependencies:
pkgconfig, zlib
Link Dependencies:
zlib
Description:
Component of CubeBundle: General purpose C++ library and tools

cubew

Homepage:
Spack package:
Versions:
4.5, 4.4.3, 4.4.2, 4.4.1, 4.4
Build Dependencies:
pkgconfig, zlib
Link Dependencies:
zlib
Description:
Component of CubeBundle: High performance C Writer library

cubist

Homepage:
Spack package:
Versions:
2.07
Description:
Cubist is a powerful tool for generating rule-based models that balance the need for accurate prediction against the requirements of intelligibility. Cubist models generally give better results than those produced by simple techniques such as multivariate linear regression, while also being easier to understand than neural networks.

cuda

Homepage:
Spack package:
Versions:
11.1.0, 11.0.2, 10.2.89, 10.1.243, 10.0.130, 9.2.88, 9.1.85, 9.0.176, 8.0.61, 8.0.44, 7.5.18, 6.5.14
Build Dependencies:
libxml2
Link Dependencies:
libxml2
Description:
CUDA is a parallel computing platform and programming model invented by NVIDIA. It enables dramatic increases in computing performance by harnessing the power of the graphics processing unit (GPU). Note: This package does not currently install the drivers necessary to run CUDA. These will need to be installed manually. See: https://docs.nvidia.com/cuda/ for details.

cuda-memtest

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, cuda
Link Dependencies:
cuda
Description:
Maintained and updated fork of cuda_memtest. original homepage: http://sourceforge.net/projects/cudagpumemtest . This software tests GPU memory for hardware errors and soft errors using CUDA or OpenCL.

cudnn

Homepage:
Spack package:
Versions:
8.0.4.30-11.1-linux-x64, 8.0.4.30-11.1-linux-ppc64le, 8.0.4.30-11.0-linux-x64, 8.0.4.30-11.0-linux-ppc64le, 8.0.4.30-10.2-linux-x64, 8.0.4.30-10.2-linux-ppc64le, 8.0.4.30-10.1-linux-x64, 8.0.4.30-10.1-linux-ppc64le, 8.0.3.33-11.0-linux-x64, 8.0.3.33-11.0-linux-ppc64le, 8.0.3.33-10.2-linux-x64, 8.0.3.33-10.2-linux-ppc64le, 8.0.3.33-10.1-linux-x64, 8.0.3.33-10.1-linux-ppc64le, 8.0.2.39-11.0-linux-x64, 8.0.2.39-11.0-linux-ppc64le, 8.0.2.39-10.2-linux-x64, 8.0.2.39-10.2-linux-ppc64le, 8.0.2.39-10.1-linux-x64, 8.0.2.39-10.1-linux-ppc64le, 8.0.0.180-11.0-linux-x64, 8.0.0.180-11.0-linux-ppc64le, 8.0.0.180-10.2-linux-x64, 8.0.0.180-10.2-linux-ppc64le, 7.6.5.32-10.2-linux-x64, 7.6.5.32-10.2-linux-ppc64le, 7.6.5.32-10.1-osx-x64, 7.6.5.32-10.1-linux-x64, 7.6.5.32-10.1-linux-ppc64le, 7.6.5.32-10.0-osx-x64, 7.6.5.32-10.0-linux-x64, 7.6.5.32-10.0-linux-ppc64le, 7.6.5.32-9.2-linux-x64, 7.6.5.32-9.2-linux-ppc64le, 7.6.5.32-9.0-linux-x64, 7.6.4.38-10.1-osx-x64, 7.6.4.38-10.1-linux-x64, 7.6.4.38-10.1-linux-ppc64le, 7.6.4.38-10.0-osx-x64, 7.6.4.38-10.0-linux-x64, 7.6.4.38-10.0-linux-ppc64le, 7.6.4.38-9.2-linux-x64, 7.6.4.38-9.2-linux-ppc64le, 7.6.4.38-9.0-linux-x64, 7.6.3.30-10.1-linux-x64, 7.6.3.30-10.1-linux-ppc64le, 7.5.1.10-10.1-linux-x64, 7.5.1.10-10.1-linux-ppc64le, 7.5.1.10-10.0-linux-x64, 7.5.1.10-10.0-linux-ppc64le, 7.5.0.56-10.1-linux-x64, 7.5.0.56-10.1-linux-ppc64le, 7.5.0.56-10.0-linux-x64, 7.5.0.56-10.0-linux-ppc64le, 7.3.0.29-9.0-linux-x64, 7.2.1.38-9.0-linux-x64, 7.1.3-9.1-linux-x64, 7.1.3-9.1-linux-ppc64le, 6.0-8.0-linux-x64, 5.1-8.0-linux-x64
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
NVIDIA cuDNN is a GPU-accelerated library of primitives for deep neural networks

cunit

Homepage:
Spack package:
Versions:
2.1-3
Build Dependencies:
autoconf, automake, libtool, m4
Description:
Automated testing framework for 'C'.

cups

Homepage:
Spack package:
Versions:
2.2.3
Build Dependencies:
gnutls
Link Dependencies:
gnutls
Description:
CUPS is the standards-based, open source printing system developed by Apple Inc. for macOS and other UNIX-like operating systems. CUPS uses the Internet Printing Protocol (IPP) to support printing to local and network printers. This provides the core CUPS libraries, not a complete CUPS install.

curl

Homepage:
Spack package:
Versions:
7.72.0, 7.71.0, 7.68.0, 7.63.0, 7.60.0, 7.59.0, 7.56.0, 7.54.0, 7.53.1, 7.52.1, 7.50.3, 7.50.2, 7.50.1, 7.49.1, 7.47.1, 7.46.0, 7.45.0, 7.44.0, 7.43.0, 7.42.1
Build Dependencies:
openssl, libidn2, zlib, nghttp2, libssh2, libssh, krb5
Link Dependencies:
openssl, libidn2, zlib, nghttp2, libssh2, libssh, krb5
Description:
cURL is an open source command line tool and library for transferring data with URL syntax

cusz

Homepage:
Spack package:
Versions:
master, 0.1.2
Description:
cuSZ is a CUDA-based error-bounded lossy compressor for scientific data (floating point and integers).

cvs

Homepage:
Spack package:
Versions:
1.12.13
Description:
CVS a very traditional source control system

cxx

Homepage:
Spack package:
Description:
Virtual package for the C++ language.

cxxopts

Homepage:
Spack package:
Versions:
2.2.0, 2.1.2, 2.1.1, 2.1.0, 2.0.0, 1.4.4, 1.4.3, 1.4.2, 1.4.1, 1.4.0
Build Dependencies:
cmake, icu4c
Link Dependencies:
icu4c
Description:
Lightweight C++ command line option parser

cyrus-sasl

Homepage:
Spack package:
Versions:
2.1.27, 2.1.26, 2.1.25, 2.1.24, 2.1.23
Build Dependencies:
m4, autoconf, automake, libtool
Description:
This is the Cyrus SASL API implementation. It can be used on the client or server side to provide authentication and authorization services.

czmq

Homepage:
Spack package:
Versions:
4.1.1, 4.0.2, 3.0.2
Build Dependencies:
libtool, automake, autoconf, pkgconfig, libuuid, libzmq
Link Dependencies:
libuuid, libzmq
Description:
A C interface to the ZMQ library

dakota

Homepage:
Spack package:
Versions:
6.12, 6.9, 6.3
Build Dependencies:
cmake, netlib-lapack, blas, mpi, python, boost
Link Dependencies:
netlib-lapack, blas, mpi, python, boost
Description:
The Dakota toolkit provides a flexible, extensible interface between analysis codes and iterative systems analysis methods. Dakota contains algorithms for: - optimization with gradient and non gradient-based methods; - uncertainty quantification with sampling, reliability, stochastic - expansion, and epistemic methods; - parameter estimation with nonlinear least squares methods; - sensitivity/variance analysis with design of experiments and - parameter study methods. These capabilities may be used on their own or as components within advanced strategies such as hybrid optimization, surrogate-based optimization, mixed integer nonlinear programming, or optimization under uncertainty.

daligner

Homepage:
Spack package:
Versions:
1.0
Description:
Daligner: The Dazzler "Overlap" Module.

damageproto

Homepage:
Spack package:
Versions:
1.2.1
Build Dependencies:
pkgconfig, util-macros
Description:
X Damage Extension. This package contains header files and documentation for the X Damage extension. Library and server implementations are separate.

damaris

Homepage:
Spack package:
Versions:
master, 1.3.1
Build Dependencies:
cmake, mpi, boost, xsd, xerces-c, hdf5, catalyst, visit
Link Dependencies:
mpi, boost, xsd, xerces-c, hdf5, catalyst, visit
Description:
Damaris is a middleware for I/O and in situ analytics targeting large- scale, MPI-based HPC simulations.

damselfly

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Damselfly is a model-based parallel network simulator.

darshan-runtime

Homepage:
Spack package:
Versions:
develop, 3.2.1, 3.2.0, 3.1.8, 3.1.7, 3.1.6, 3.1.0, 3.0.0
Build Dependencies:
mpi, zlib
Link Dependencies:
mpi, zlib
Description:
Darshan (runtime) is a scalable HPC I/O characterization tool designed to capture an accurate picture of application I/O behavior, including properties such as patterns of access within files, with minimum overhead. DarshanRuntime package should be installed on systems where you intend to instrument MPI applications.

darshan-util

Homepage:
Spack package:
Versions:
develop, 3.2.1, 3.2.0, 3.1.8, 3.1.7, 3.1.6, 3.1.0, 3.0.0
Build Dependencies:
zlib, bzip2
Link Dependencies:
zlib, bzip2
Run Dependencies:
bzip2
Description:
Darshan (util) is collection of tools for parsing and summarizing log files produced by Darshan (runtime) instrumentation. This package is typically installed on systems (front-end) where you intend to analyze log files produced by Darshan (runtime).

dash

Homepage:
Spack package:
Versions:
0.5.9.1
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
libedit
Description:
The Debian Almquist Shell.

datamash

Homepage:
Spack package:
Versions:
1.3, 1.1.0, 1.0.7, 1.0.6, 1.0.5
Description:
GNU datamash is a command-line program which performs basic numeric, textual and statistical operations on input textual data files.

dataspaces

Homepage:
Spack package:
Versions:
1.8.0, 1.6.2
Build Dependencies:
m4, automake, autoconf, libtool, mpi
Link Dependencies:
mpi
Description:
an extreme scale data management framework.

datatransferkit