Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 6752 mainline packages:

3dtk opencascade py-stevedore
3proxy opencl-c-headers py-stomp-py
7zip opencl-clhpp py-stopit
abacus opencl-headers py-storm
abduco opencoarrays py-stratify
abi-compliance-checker opencv py-stsci-distutils
abi-dumper opendatadetector py-submitit
abinit opendx py-subprocess32
abseil-cpp openexr py-subrosa
abyss openfast py-svgpathtools
accfft openfdtd py-svgutils
acct openfoam py-svgwrite
accumulo openfoam-org py-symengine
ace openfst py-symfit
acfl opengl py-sympy
ack openglu py-syned
acl openimageio py-systemd-python
acpica-tools openipmi py-tables
acpid openjdk py-tabulate
activeharmony openjpeg py-tap-py
activemq openkim-models py-tatsu
acts openldap py-tblib
acts-dd4hep openlibm py-tbparse
actsvg openloops py-templateflow
addrwatch openmc py-tempora
adept-utils openmm py-tenacity
adf openmolcas py-tensorboard
adiak openmpi py-tensorboard-data-server
adios openmx py-tensorboard-plugin-wit
adios2 opennurbs py-tensorboardx
adlbx openpa py-tensorflow
admixtools openpbs py-tensorflow-datasets
adms openpmd-api py-tensorflow-estimator
adol-c openrasmol py-tensorflow-hub
advancecomp openresty py-tensorflow-metadata
adwaita-icon-theme openscenegraph py-tensorflow-probability
aegean openslide py-termcolor
aeskeyfind openslp py-terminado
aespipe openspeedshop py-terminaltables
agile openspeedshop-utils py-tern
agrep openssh py-testfixtures
aida openssl py-testinfra
akantu openstf py-testpath
alan opensubdiv py-testrepository
albany opentsdb py-testresources
albert openturns py-testscenarios
alembic openvdb py-testtools
alglib openwsman py-tetoolkit
allpaths-lg ophidia-analytics-framework py-text-unidecode
alluxio ophidia-io-server py-textblob
alpaka ophidia-primitives py-texttable
alpgen ophidia-server py-tfdlpack
alps opium py-theano
alquimia optional-lite py-thinc
alsa-lib optipng py-thirdorder
aluminum opus py-threadpoolctl
ambari or-tools py-tifffile
amber oracle-instant-client py-timm
amd-aocl oras py-tinyarray
amdblis orbit2 py-tinycss2
amdfftw orc py-tinydb
amdlibflame orca py-tokenize-rt
amdlibm orfm py-tokenizers
amdscalapack orientdb py-toml
amg orthofiller py-tomli
amg2013 orthofinder py-tomli-w
amgx orthomcl py-tomlkit
aml osi py-tomopy
amp osmctools py-toolz
ampl osmesa py-toposort
ampliconnoise osqp py-torch
ampt ossp-uuid py-torch-cluster
amr-wind osu-micro-benchmarks py-torch-geometric
amrex otf py-torch-nvidia-apex
amrfinder otf2 py-torch-scatter
amrvis ovito py-torch-sparse
anaconda2 p11-kit py-torch-spline-conv
anaconda3 p3dfft3 py-torchaudio
andi p4est py-torchdata
angsd p7zip py-torchfile
anicalculator pacbio-daligner py-torchgeo
ant pacbio-damasker py-torchmeta
antimony pacbio-dazz-db py-torchmetrics
antlr pacbio-dextractor py-torchsummary
ants pacifica-cli py-torchtext
any2fasta packmol py-torchvision
aocc pacparser py-tornado
aocl-sparse pacvim py-tox
aoflagger pagit py-tpot
aom pagmo py-tqdm
aomp pagmo2 py-traceback2
apachetop pajeng py-traitlets
apcomp pal py-traits
ape palisade-development py-traitsui
aperture-photometry paml py-transformers
apex panda py-transforms3d
apfel pandaseq py-treehash
apktool pandoc py-triangle
apple-gl pango py-trojanzoo-sphinx-theme
apple-glu pangolin py-tuiview
apple-libunwind pangomm py-tweedledum
apple-libuuid papi py-twine
applewmproto papyrus py-twisted
appres paradiseo py-typed-ast
apptainer parallel py-typeguard
apr parallel-netcdf py-types-python-dateutil
apr-util parallelio py-types-requests
aragorn parallelmergetree py-types-urllib3
arbor paraver py-typesentry
arborx paraview py-typing
arc parflow py-typing-extensions
archer parmetis py-tzlocal
argobots parmgridgen py-ucsf-pyem
argon2 parmmg py-ucx-py
argp-standalone parquet-cpp py-uhi
args parquet-format py-ujson
argtable parsec py-umalqurra
aria2 parsimonator py-umap-learn
arm-forge parsplice py-umi-tools
armadillo partitionfinder py-uncertainties
armpl-gcc pasta py-unicycler
arpack-ng pastix py-unidecode
arrayfire patch py-unittest2
arrow patchelf py-unittest2py3k
asagi patchutils py-unshare
ascent pathfinder py-update-checker
asciidoc pax-utils py-uproot
asciidoc-py3 pbbam py-uproot3
asdcplib pbmpi py-uproot3-methods
asdf-cxx pbsuite py-uproot4
asio pciutils py-uritemplate
aspa pcl py-urllib3
aspcud pcma py-urllib3-secure-extra
aspect pcre py-urwid
aspell pcre2 py-us
aspell6-de pcsclite py-usgs
aspell6-en pdc py-utils
aspell6-es pdf2svg py-uvloop
aspera-cli pdftk py-uvw
assimp pdsh py-uwsgi
astra pdt py-vcf-kit
astral pegtl py-vcrpy
astyle pennant py-vcstool
at-spi2-atk percept py-vcstools
at-spi2-core percona-server py-vcversioner
atf perfstubs py-vector
athena perl py-vector-quantize-pytorch
atk perl-acme-damn py-vermin
atlas perl-algorithm-diff py-versioneer
atmi perl-alien-build py-vine
atom-dft perl-alien-libxml2 py-virtualenv
atompaw perl-alien-svn py-virtualenv-clone
atop perl-app-cmd py-virtualenvwrapper
attr perl-array-utils py-visdom
audacious perl-b-hooks-endofscope py-voluptuous
audacity perl-bignum py-vsc-base
audit-userspace perl-bio-searchio-hmmer py-vsc-install
augustus perl-bioperl py-vsts
authd perl-bit-vector py-vsts-cd-manager
authselect perl-cairo py-walinuxagent
autoconf perl-capture-tiny py-wand
autoconf-archive perl-carp py-wandb
autodiff perl-carp-clan py-warlock
autodock-gpu perl-cgi py-warpx
autodock-vina perl-class-data-inheritable py-wasabi
autofact perl-class-inspector py-watchdog
autogen perl-class-load py-wcsaxes
automaded perl-class-load-xs py-wcwidth
automake perl-class-method-modifiers py-weave
avizo perl-clone py-webargs
aws-ofi-nccl perl-clone-choose py-webencodings
aws-ofi-rccl perl-compress-raw-bzip2 py-webkit-server
aws-parallelcluster perl-compress-raw-zlib py-weblogo
aws-sdk-cpp perl-config-general py-webob
awscli perl-contextual-return py-websocket-client
axel perl-cpan-meta-check py-websockets
axl perl-data-dumper py-werkzeug
axom perl-data-optlist py-wget
babelflow perl-data-stag py-whatshap
babeltrace perl-date-manip py-wheel
bacio perl-db-file py-whichcraft
backupninja perl-dbd-mysql py-whoosh
bam-readcount perl-dbd-pg py-widgetsnbextension
bamaddrg perl-dbd-sqlite py-win-unicode-console
bamdst perl-dbi py-wincertstore
bamtools perl-devel-cycle py-word2number
bamutil perl-devel-globaldestruction py-wordcloud
banner perl-devel-overloadinfo py-workload-automation
bannergrab perl-devel-stacktrace py-wradlib
barrnap perl-devel-symdump py-wrapt
bart perl-digest-md5 py-wsproto
barvinok perl-digest-md5-file py-wstool
bash perl-dist-checkconflicts py-wub
bash-completion perl-encode-locale py-wurlitzer
bashtop perl-error py-ww
bat perl-eval-closure py-wxmplot
batchedblas perl-exception-class py-wxpython
batctl perl-exporter-lite py-x21
bats perl-exporter-tiny py-xarray
baurmc perl-extutils-config py-xattr
bazel perl-extutils-depends py-xdot
bbcp perl-extutils-helpers py-xenv
bbmap perl-extutils-installpaths py-xgboost
bc perl-extutils-makemaker py-xlrd
bcache perl-extutils-pkgconfig py-xlsxwriter
bcftools perl-ffi-checklib py-xlwt
bcl2fastq2 perl-file-chdir py-xmlrunner
bdftopcf perl-file-copy-recursive py-xmltodict
bdii perl-file-find-rule py-xonsh
bdsim perl-file-grep py-xopen
bdw-gc perl-file-homedir py-xpyb
beagle perl-file-listing py-xrootdpyfs
beakerlib perl-file-pushd py-xvfbwrapper
bear perl-file-remove py-xxhash
beast-tracer perl-file-sharedir-install py-yacs
beast1 perl-file-slurp py-yahmm
beast2 perl-file-slurp-tiny py-yajl
bedops perl-file-slurper py-yamlreader
bedtools2 perl-file-which py-yapf
beforelight perl-font-ttf py-yarl
benchmark perl-forks py-yaspin
berkeley-db perl-fth py-yolk3k
berkeleygw perl-gd py-youtube-dl
bertini perl-gdgraph py-yq
bgpdump perl-gdgraph-histogram py-yt
bib2xhtml perl-gdtextutil py-ytopt
bigdft-atlab perl-getopt-tabular py-ytopt-autotune
bigdft-chess perl-graph py-zarr
bigdft-core perl-graph-readwrite py-zc-buildout
bigdft-futile perl-hash-merge py-zc-lockfile
bigdft-libabinit perl-html-parser py-zict
bigdft-psolver perl-html-tagset py-zipfile-deflate64
bigdft-spred perl-http-cookies py-zipp
bigdft-suite perl-http-daemon py-zope-event
bigreqsproto perl-http-date py-zope-interface
bind9 perl-http-message py-zxcvbn
binutils perl-http-negotiate pygmo
bioawk perl-inline pythia6
biobambam2 perl-inline-c pythia8
biobloom perl-io-all python
biopieces perl-io-compress q-e-sirius
bird perl-io-html qbank
bismark perl-io-prompt qbox
bison perl-io-sessiondata qca
bitgroomingz perl-io-socket-ssl qcachegrind
bitlbee perl-io-string qcat
bitmap perl-io-stringy qd
bitsery perl-io-tty qemu
blackhat perl-ipc-run qgis
blaspp perl-json qgraf
blasr perl-libwww-perl qhull
blasr-libcpp perl-libxml-perl qjson
blast-legacy perl-list-moreutils qmcpack
blast-plus perl-list-moreutils-xs qmd-progress
blast2go perl-log-log4perl qnnpack
blat perl-logger-simple qorts
blaze perl-lwp-mediatypes qoz
blis perl-lwp-protocol-https qperf
bliss perl-mailtools qrupdate
blitz perl-math-bezier qscintilla
blktrace perl-math-bigint qt
bloaty perl-math-bigrat qt-creator
blogbench perl-math-cdf qtgraph
blt perl-math-cephes qthreads
bmake perl-math-matrixreal qtkeychain
bmi perl-math-round qtltools
bml perl-math-vecstat qualimap
bohrium perl-mce quantum-espresso
boinc-client perl-mni-perllib quartz
bolt perl-module-build qucs
bonniepp perl-module-build-tiny quicksilver
bookleaf-cpp perl-module-corelist quinoa
boost perl-module-implementation quota
boostmplcartesianproduct perl-module-install qwt
botan perl-module-runtime qwtpolar
bowtie perl-module-runtime-conflicts r
bowtie2 perl-module-scandeps r-a4
boxlib perl-moo r-a4base
bpp-core perl-moose r-a4classif
bpp-phyl perl-mozilla-ca r-a4core
bpp-phyl-omics perl-mro-compat r-a4preproc
bpp-popgen perl-namespace-clean r-a4reporting
bpp-seq perl-net-http r-abadata
bpp-seq-omics perl-net-scp-expect r-abaenrichment
bpp-suite perl-net-ssleay r-abind
bracken perl-number-compare r-absseq
braker perl-number-format r-acde
branson perl-object-insideout r-acepack
breakdancer perl-package-deprecationmanager r-acgh
bref3 perl-package-stash r-acme
breseq perl-package-stash-xs r-ada
bricks perl-padwalker r-adabag
bridger perl-parallel-forkmanager r-ade4
brigand perl-params-util r-adegenet
brltty perl-params-validate r-adegraphics
brotli perl-parse-recdescent r-adephylo
brpc perl-path-tiny r-adespatial
brunsli perl-pdf-api2 r-adgoftest
brynet perl-pegex r-adsplit
bsseeker2 perl-perl-unsafe-signals r-aer
bubblewrap perl-perl-version r-afex
bucky perl-perl4-corelibs r-affxparser
buddy perl-perl6-slurp r-affy
bueno perl-perlio-gzip r-affycomp
bufr perl-perlio-utf8-strict r-affycompatible
bumpversion perl-readonly r-affycontam
busco perl-regexp-common r-affycoretools
busybox perl-role-tiny r-affydata
butter perl-scalar-list-utils r-affyexpress
butterflypack perl-scalar-util-numeric r-affyilm
bwa perl-set-intervaltree r-affyio
bwtool perl-set-intspan r-affypdnn
byacc perl-set-scalar r-affyplm
byobu perl-soap-lite r-affyqcreport
byte-unixbench perl-star-fusion r-affyrnadegradation
byteman perl-statistics-basic r-agdex
bzip2 perl-statistics-descriptive r-agilp
c perl-statistics-pca r-agimicrorna
c-ares perl-sub-exporter r-aims
c-blosc perl-sub-exporter-progressive r-aldex2
c-blosc2 perl-sub-identify r-allelicimbalance
c-lime perl-sub-install r-alpine
c3d perl-sub-name r-als
ca-certificates-mozilla perl-sub-quote r-alsace
cabana perl-sub-uplevel r-altcdfenvs
cachefilesd perl-svg r-amap
caffe perl-swissknife r-amelia
cairo perl-sys-sigaction r-ampliqueso
cairomm perl-task-weaken r-analysispageserver
caliper perl-term-readline-gnu r-anaquin
callflow perl-termreadkey r-aneufinder
callpath perl-test-cleannamespaces r-aneufinderdata
camellia perl-test-deep r-animation
camp perl-test-differences r-annaffy
camx perl-test-exception r-annotate
canal perl-test-fatal r-annotationdbi
candle-benchmarks perl-test-memory-cycle r-annotationfilter
cans perl-test-more r-annotationforge
cantera perl-test-most r-annotationhub
canu perl-test-needs r-anytime
cap3 perl-test-output r-aod
capnproto perl-test-requires r-ape
capstone perl-test-requiresinternet r-aplot
cardioid perl-test-warn r-argparse
care perl-test-warnings r-aroma-light
casacore perl-text-csv r-ash
cask perl-text-diff r-askpass
casper perl-text-format r-assertive
cassandra perl-text-glob r-assertive-base
catalyst perl-text-simpletable r-assertive-code
catch2 perl-text-soundex r-assertive-data
cbc perl-text-unidecode r-assertive-data-uk
cbench perl-thread-queue r-assertive-data-us
cbflib perl-threads r-assertive-datetimes
cblas perl-time-hires r-assertive-files
cbtf perl-time-piece r-assertive-matrices
cbtf-argonavis perl-timedate r-assertive-models
cbtf-argonavis-gui perl-tk r-assertive-numbers
cbtf-krell perl-try-tiny r-assertive-properties
cbtf-lanl perl-uri r-assertive-reflection
cc65 perl-uri-encode r-assertive-sets
ccache perl-want r-assertive-strings
ccfits perl-www-robotrules r-assertive-types
ccls perl-xml-dom r-assertthat
ccs-qcd perl-xml-dom-xpath r-backports
cctools perl-xml-filter-buffertext r-bamsignals
cdbfasta perl-xml-libxml r-base64
cdd perl-xml-libxslt r-base64enc
cddlib perl-xml-namespacesupport r-bayesm
cdecimal perl-xml-parser r-bayesplot
cdhit perl-xml-parser-lite r-bbmisc
cdo perl-xml-quote r-beachmat
ceed perl-xml-regexp r-beanplot
celeritas perl-xml-sax r-beeswarm
cepgen perl-xml-sax-base r-bfast
cereal perl-xml-sax-writer r-bfastspatial
ceres-solver perl-xml-simple r-bglr
cfitsio perl-xml-twig r-bh
cgal perl-xml-writer r-biasedurn
cgdb perl-xml-xpathengine r-bibtex
cgdcbxd perl-yaml r-bigalgebra
cget perl-yaml-libyaml r-bigmemory
cgl perl-yaml-tiny r-bigmemory-sri
cgm pestpp r-bindr
cgns petaca r-bindrcpp
chaco petsc r-bio3d
chai pexsi r-biobase
chameleon pfapack r-biocfilecache
changa pfft r-biocgenerics
channelflow pflask r-biocinstaller
chaparral pflotran r-biocio
chapel pfunit r-biocmanager
chaplin pgdspider r-biocneighbors
charliecloud pgi r-biocparallel
charmpp pgplot r-biocsingular
chatterbug phantompeakqualtools r-biocstyle
check phast r-biocversion
chgcentre phasta r-biom-utils
chill phist r-biomart
chlorop phoenix r-biomartr
chombo photos r-biomformat
chrony photos-f r-biostrings
chrpath php r-biovizbase
cinch phrap-crossmatch-swat r-bit
circos phred r-bit64
cistem phylip r-bitops
citcoms phylobayesmpi r-blavaan
cityhash phyluce r-blob
cjson picard r-blockmodeling
ck picsar r-bluster
clamav picsarlite r-bmp
clamr pidx r-bookdown
clapack pig r-boot
clara pigz r-boruta
claw pika r-brew
clblast pilercr r-bridgesampling
cleaveland4 pilon r-brio
cleverleaf pindel r-brms
clfft pinentry r-brobdingnag
clhep pinfo r-broom
cli11 pipework r-bsgenome
clinfo piranha r-bsgenome-hsapiens-ucsc-hg19
clingo pism r-bslib
clingo-bootstrap pixman r-bsseq
cln pixz r-bumphunter
cloc pkg-config r-bwstest
cloog pkgconf r-c50
cloverleaf pktools r-ca
cloverleaf3d planck-likelihood r-cachem
clp plasma r-cairo
clustal-omega platypus r-callr
clustalw plink r-car
cmake plink-ng r-caracas
cmaq plplot r-cardata
cmark plumed r-caret
cmdstan ply r-caretensemble
cminpack pmdk r-caroline
cmocka pmemkv r-category
cmockery pmerge r-catools
cmor pmgr-collective r-cca
cni-plugins pmix r-ccp
cnmem pmlib r-cdcfluview
cnpy pnfft r-cellranger
cntk pngquant r-champ
cntk1bitsgd pngwriter r-champdata
cnvnator pnmpi r-checkmate
codar-cheetah poamsa r-checkpoint
code-server pocl r-chemometrics
codec2 podio r-chipseq
codes podman r-chron
coevp poke r-circlize
cohmm polymake r-circstats
coin3d polypolish r-class
coinhsl poplddecay r-classint
coinutils poppler r-cli
collectd poppler-data r-clipr
collier popt r-clisymbols
colm porta r-clue
colordiff portage r-cluster
comd portcullis r-clustergeneration
comgr ports-of-call r-clusterprofiler
commons-lang postgis r-cmdstanr
commons-lang3 postgresql r-cner
commons-logging povray r-coda
compadre powerapi r-codetools
compiz powertop r-codex
compose ppl r-coin
compositeproto pplacer r-colorspace
conda4aarch64 ppopen-appl-amr-fdm r-colourpicker
conduit ppopen-appl-bem r-combinat
conmon ppopen-appl-bem-at r-commonmark
connect-proxy ppopen-appl-dem-util r-complexheatmap
conserver ppopen-appl-fdm r-compositions
console-bridge ppopen-appl-fdm-at r-compquadform
constype ppopen-appl-fem r-condop
consul ppopen-appl-fvm r-conquer
converge ppopen-at r-construct
cool ppopen-math-mp r-convevol
coral ppopen-math-vis r-copula
corenlp prank r-corhmm
coreutils precice r-corpcor
corset predixy r-corrplot
cosbench premake-core r-countrycode
cosign presentproto r-covr
cosma preseq r-cowplot
cosmoflow-benchmark presto r-cpp11
cosmomc price r-crayon
cosp2 primer3 r-credentials
costa prinseq-lite r-crosstalk
cotter printproto r-crul
couchdb prism r-ctc
cowsay prmon r-cubature
cp2k prng r-cubist
cpio probconsrna r-curl
cplex procenv r-dada2
cpmd process-in-process r-data-table
cpp-argparse procps r-dbi
cpp-httplib procps-ng r-dbplyr
cpp-termcolor prod-util r-debugme
cppad prodigal r-decipher
cppcheck professor r-delayedarray
cppcodec profugusmc r-delayedmatrixstats
cppcoro proj r-deldir
cppgsl prokka r-dendextend
cpprestsdk prometheus r-deoptim
cppunit prophecy4f r-deoptimr
cppzmq protobuf r-deriv
cpu-features protobuf-c r-desc
cpuinfo proxymngr r-deseq
cqrlib prrte r-deseq2
cquery pruners-ninja r-desolve
cracklib ps-lite r-devtools
cradl pscmc r-dexseq
cram psi4 r-diagrammer
cray-fftw psimd r-dicekriging
cray-libsci pslib r-dichromat
cray-mpich psm r-diffobj
cray-mvapich2 psmc r-diffusionmap
cray-pmi pstreams r-digest
creduce pthreadpool r-diptest
crmc pugixml r-dirichletmultinomial
cromwell pulseaudio r-dismo
cromwell-womtool pumi r-distributional
cronie pv r-diversitree
crtm pvm r-dmrcate
crunch pwgen r-dnacopy
cryptopp pxz r-do-db
cryptsetup py-3to2 r-domc
csa-c py-4suite-xml r-doparallel
cscope py-abcpy r-dorng
csdp py-abipy r-dose
ctffind py-about-time r-dosnow
ctpl py-absl-py r-dotcall64
ctre py-accimage r-downlit
cub py-acme-tiny r-downloader
cuba py-adal r-dplyr
cube py-adb-enhanced r-dqrng
cube-blade py-addict r-dss
cubelib py-adios r-dt
cubew py-advancedhtmlparser r-dtplyr
cubist py-aenum r-dtw
cuda py-affine r-dygraphs
cuda-memtest py-agate r-dynamictreecut
cudnn py-agate-dbf r-e1071
cufflinks py-agate-excel r-earth
cunit py-agate-sql r-ecp
cupla py-aiobotocore r-edger
cups py-aiocontextvars r-effects
curl py-aiodns r-elemstatlearn
cusz py-aiofiles r-ellipse
cutensor py-aiohttp r-ellipsis
cutlang py-aiohttp-cors r-emmeans
cutlass py-aioitertools r-emmli
cvector py-aioredis r-energy
cvs py-aiosignal r-enrichplot
cxx py-aiosqlite r-ensembldb
cxxopts py-alabaster r-envstats
cxxtest py-alembic r-ergm
cyrus-sasl py-alive-progress r-estimability
czmq py-alphafold r-europepmc
dakota py-altair r-evaluate
daligner py-altgraph r-evd
dalton py-amqp r-exactextractr
damageproto py-amrex r-exomecopy
damaris py-angel r-exomedepth
damask py-aniso8601 r-experimenthub
damask-grid py-anndata r-expint
damask-mesh py-annexremote r-expm
damselfly py-ansi2html r-factoextra
darshan-runtime py-ansible r-factominer
darshan-util py-antlr4-python3-runtime r-fansi
dash py-anuga r-farver
datamash py-anyio r-fastcluster
dataspaces py-anytree r-fastdigest
datatransferkit py-apache-beam r-fastica
date py-apache-libcloud r-fastmap
dateutils py-apex r-fastmatch
davix py-apipkg r-fastmatrix
dbcsr py-appdirs r-fda
dbow2 py-applicationinsights r-fdb-infiniummethylation-hg18
dbus py-appnope r-fdb-infiniummethylation-hg19
dbus-glib py-apptools r-fds
dbxtool py-apscheduler r-ff
dcap py-arcgis r-fftwtools
dcm2niix py-archspec r-fgsea
dcmtk py-argcomplete r-fields
dd4hep py-argh r-filehash
ddd py-argon2-cffi r-filelock
ddt py-argon2-cffi-bindings r-findpython
dealii py-argparse r-fit-models
dealii-parameter-gui py-args r-fitdistrplus
debbuild py-arm-pyart r-flashclust
debugedit py-arrow r-flexclust
decentralized-internet py-arviz r-flexmix
deconseq-standalone py-asciitree r-fnn
dejagnu py-asdf r-fontawesome
delly2 py-ase r-forcats
delphes py-asgiref r-foreach
delta py-asn1crypto r-forecast
denovogear py-aspy-yaml r-foreign
dftbplus py-asserts r-formatr
dftd3-lib py-asteval r-formula
dftd4 py-astor r-fpc
dftfe py-astpretty r-fpcompare
dhpmm-f py-astroid r-fracdiff
dhtest py-astropy r-fs
dia py-astropy-healpix r-futile-logger
dialign py-astropy-helpers r-futile-options
dialign-tx py-asttokens r-future
diamond py-astunparse r-future-apply
dicom3tools py-async-generator r-gamlss
diffmark py-async-lru r-gamlss-data
diffsplice py-async-timeout r-gamlss-dist
diffutils py-asyncio r-gamm4
digitrounding py-asynctest r-gargle
dihydrogen py-atomicwrites r-gbm
dimemas py-atpublic r-gbrd
ding-libs py-atropos r-gcrma
dire py-ats r-gdalutilities
direnv py-attrs r-gdalutils
discovar py-audioread r-gdata
discovardenovo py-auditwheel r-gdsfmt
disktype py-autograd r-geiger
dislin py-autograd-gamma r-genefilter
distbench py-automat r-genelendatabase
distcc py-autopep8 r-genemeta
diy py-auxlib r-geneplotter
dlib py-avro r-generics
dlpack py-avro-json-serializer r-genetics
dmd py-avro-python3 r-genie3
dmidecode py-awesome-slugify r-genomeinfodb
dmlc-core py-awkward r-genomeinfodbdata
dmtcp py-awkward0 r-genomicalignments
dmxproto py-awkward1 r-genomicfeatures
dnsmap py-azote r-genomicranges
dnsmasq py-azure-batch r-gensa
dnstop py-azure-cli r-geojsonsf
dnstracer py-azure-cli-command-modules-nspkg r-geometries
docbook-xml py-azure-cli-core r-geometry
docbook-xsl py-azure-cli-nspkg r-geomorph
dock py-azure-cli-telemetry r-geonames
dorian3d-dlib py-azure-common r-geoquery
dos2unix py-azure-core r-geor
dosfstools py-azure-cosmos r-geosphere
dotconf py-azure-datalake-store r-gert
dotnet-core-sdk py-azure-functions-devops-build r-getopt
double-conversion py-azure-graphrbac r-getoptlong
doxygen py-azure-identity r-ggally
dpcpp py-azure-keyvault r-ggbeeswarm
dpdk py-azure-keyvault-certificates r-ggbio
draco py-azure-keyvault-keys r-ggdendro
dracut py-azure-keyvault-nspkg r-ggforce
dramsim2 py-azure-keyvault-secrets r-ggfun
dramsim3 py-azure-loganalytics r-ggjoy
dray py-azure-mgmt-advisor r-ggmap
dri2proto py-azure-mgmt-apimanagement r-ggplot2
dri3proto py-azure-mgmt-appconfiguration r-ggplotify
drill py-azure-mgmt-applicationinsights r-ggpubr
dropwatch py-azure-mgmt-authorization r-ggraph
druid py-azure-mgmt-batch r-ggrepel
ds py-azure-mgmt-batchai r-ggridges
dsdp py-azure-mgmt-billing r-ggsci
dsfmt py-azure-mgmt-botservice r-ggsignif
dsqss py-azure-mgmt-cdn r-ggthemes
dsrc py-azure-mgmt-cognitiveservices r-ggtree
dssp py-azure-mgmt-compute r-ggvis
dtc py-azure-mgmt-consumption r-gh
dtcmp py-azure-mgmt-containerinstance r-gistr
dtf py-azure-mgmt-containerregistry r-git2r
duperemove py-azure-mgmt-containerservice r-gitcreds
dust py-azure-mgmt-core r-glimma
dwz py-azure-mgmt-cosmosdb r-glmgampoi
dxt-explorer py-azure-mgmt-datalake-analytics r-glmnet
dyninst py-azure-mgmt-datalake-store r-globaloptions
dysco py-azure-mgmt-datamigration r-globals
e2fsprogs py-azure-mgmt-deploymentmanager r-globaltest
e3sm-kernels py-azure-mgmt-devtestlabs r-glue
ea-utils py-azure-mgmt-dns r-gmodels
eagle py-azure-mgmt-eventgrid r-gmp
earlyoom py-azure-mgmt-eventhub r-go-db
easi py-azure-mgmt-hdinsight r-goftest
easybuild py-azure-mgmt-imagebuilder r-gofuncr
ebms py-azure-mgmt-iotcentral r-googledrive
ecbuild py-azure-mgmt-iothub r-googlesheets4
eccodes py-azure-mgmt-iothubprovisioningservices r-googlevis
ecdsautils py-azure-mgmt-keyvault r-goplot
ecflow py-azure-mgmt-kusto r-gosemsim
eckit py-azure-mgmt-loganalytics r-goseq
eclipse-gcj-parser py-azure-mgmt-managedservices r-gostats
ecos py-azure-mgmt-managementgroups r-gower
ecoslim py-azure-mgmt-maps r-gparotation
ecp-data-vis-sdk py-azure-mgmt-marketplaceordering r-gplots
ecp-proxy-apps py-azure-mgmt-media r-graph
ed py-azure-mgmt-monitor r-graphlayouts
editline py-azure-mgmt-msi r-grbase
editres py-azure-mgmt-netapp r-gridbase
edm4hep py-azure-mgmt-network r-gridextra
eem py-azure-mgmt-nspkg r-gridgraphics
efivar py-azure-mgmt-policyinsights r-gsa
eigen py-azure-mgmt-privatedns r-gsalib
eigenexa py-azure-mgmt-rdbms r-gseabase
elasticsearch py-azure-mgmt-recoveryservices r-gsl
elemental py-azure-mgmt-recoveryservicesbackup r-gsodr
elfio py-azure-mgmt-redhatopenshift r-gss
elfutils py-azure-mgmt-redis r-gstat
elk py-azure-mgmt-relay r-gsubfn
elmerfem py-azure-mgmt-reservations r-gtable
elpa py-azure-mgmt-resource r-gtools
elsd py-azure-mgmt-search r-gtrellis
elsdc py-azure-mgmt-security r-gviz
elsi py-azure-mgmt-servicebus r-gwmodel
emacs py-azure-mgmt-servicefabric r-hardhat
ember py-azure-mgmt-signalr r-haven
emboss py-azure-mgmt-sql r-hdf5array
embree py-azure-mgmt-sqlvirtualmachine r-hdf5r
enca py-azure-mgmt-storage r-hdrcde
enchant py-azure-mgmt-trafficmanager r-here
energyplus py-azure-mgmt-web r-hexbin
entrezdirect py-azure-multiapi-storage r-hh
entt py-azure-nspkg r-highr
environment-modules py-azure-storage-blob r-hmisc
enzo py-azure-storage-common r-hms
enzyme py-azure-storage-nspkg r-hoardr
eospac py-azureml-automl-core r-htmltable
epics-base py-azureml-core r-htmltools
epics-ca-gateway py-azureml-dataprep r-htmlwidgets
epics-pcas py-azureml-dataprep-native r-httpcode
epics-snmp py-azureml-dataprep-rslex r-httpuv
eq-r py-azureml-dataset-runtime r-httr
er py-azureml-pipeline r-hwriter
erfa py-azureml-pipeline-core r-hypergraph
erlang py-azureml-pipeline-steps r-ica
ermod py-azureml-sdk r-ids
erne py-azureml-telemetry r-igraph
es-shell py-azureml-train r-illumina450probevariants-db
esmf py-azureml-train-automl-client r-illuminahumanmethylation450kanno-ilmn12-hg19
espanso py-azureml-train-core r-illuminahumanmethylation450kmanifest
essl py-azureml-train-restclients-hyperdrive r-illuminahumanmethylationepicanno-ilm10b4-hg19
esys-particle py-babel r-illuminahumanmethylationepicmanifest
etcd py-backcall r-illuminaio
ethminer py-backports-abc r-imager
ethtool py-backports-cached-property r-impute
etsf-io py-backports-entry-points-selectable r-influencer
eve py-backports-functools-lru-cache r-ini
evemu py-backports-lzma r-inline
everytrace py-backports-os r-insight
everytrace-example py-backports-shutil-get-terminal-size r-interactivedisplaybase
evieext py-backports-ssl-match-hostname r-interp
evtgen py-backports-tempfile r-intervals
exa py-backports-weakref r-inum
exabayes py-bakta r-ipred
exaca py-bandit r-iranges
exago py-basemap r-irdisplay
examinimd py-bash-kernel r-irkernel
examl py-basis-set-exchange r-irlba
exampm py-batchspawner r-isdparser
exasp2 py-bayesian-optimization r-islr
exawind py-bcbio-gff r-iso
exaworks py-bcolz r-isoband
exciting py-bcrypt r-isva
exempi py-beancount r-iterators
exiv2 py-beautifulsoup4 r-jade
exmcutils py-beniget r-janitor
exodusii py-bids-validator r-jaspar2018
exonerate py-bigdft r-jomo
exonerate-gff3 py-bigfloat r-jpeg
expat py-billiard r-jquerylib
expect py-binaryornot r-jsonify
express py-bintrees r-jsonlite
extrae py-binwalk r-kegg-db
exuberant-ctags py-biom-format r-kegggraph
eztrace py-biomine r-keggrest
f2c py-biopandas r-kernlab
f3d py-biopython r-kernsmooth
f77-zmq py-bitarray r-kknn
f90cache py-bitshuffle r-klar
fabtests py-bitstring r-knitr
fairlogger py-black r-kpmt
faiss py-bleach r-ks
fakechroot py-blessed r-ksamples
fakexrandr py-blessings r-labeling
falcon py-blight r-labelled
fann py-blinker r-lambda-r
faodel py-blis r-laplacesdemon
fasd py-blosc r-lars
fast-global-file-status py-bmap-tools r-later
fasta py-bokeh r-lattice
fastani py-boltons r-latticeextra
fastdb py-boom-boot-manager r-lava
fastdfs py-boost-histogram r-lavaan
fastjar py-boto r-lazyeval
fastjet py-boto3 r-ldheatmap
fastjson py-botocore r-leafem
fastmath py-botorch r-leaflet
fastme py-bottle r-leaflet-providers
fastp py-bottleneck r-leafpop
fastphase py-breakseq2 r-leaps
fastq-screen py-breathe r-learnbayes
fastqc py-brian r-leiden
fastqvalidator py-brian2 r-lfe
fasttext py-brotlipy r-lhs
fasttransforms py-bsddb3 r-libcoin
fasttree py-build r-libpressio
fastx-toolkit py-bx-python r-lifecycle
faust py-bz2file r-limma
fbgemm py-cachecontrol r-limsolve
fca py-cached-property r-linprog
fcgi py-cachetools r-listenv
fd py-cachy r-lme4
fd-find py-cairocffi r-lmertest
fdb py-cantoolz r-lmtest
fdupes py-carputils r-lobstr
feh py-cartopy r-locfit
fenics py-catalogue r-log4r
fenics-basix py-catkin-pkg r-loo
fenics-dolfinx py-cclib r-lpsolve
fenics-ufcx py-cdat-lite r-lpsolveapi
feq-parse py-cdo r-lsei
fermi py-cdsapi r-lubridate
fermikit py-cekit r-lumi
fermisciencetools py-celery r-lwgeom
ferret py-cerberus r-magic
feynhiggs py-certifi r-magick
ffb py-certipy r-magrittr
ffmpeg py-cf-units r-makecdfenv
ffr py-cffconvert r-maldiquant
ffsb py-cffi r-manipulatewidget
ffte py-cfgrib r-mapplots
fftw py-cfgv r-mapproj
fftx py-cftime r-maps
fgsl py-cgen r-maptools
fides py-chai r-mapview
figlet py-chainer r-markdown
figtree py-chainmap r-marray
file py-chalice r-mass
filebench py-chardet r-mathjaxr
filo py-charm4py r-matlab
filtlong py-charset-normalizer r-matr
fimpute py-checkm-genome r-matrix
find-circ py-cheetah r-matrixgenerics
findbugs py-cheetah3 r-matrixmodels
findutils py-cheroot r-matrixstats
fio py-cherrypy r-mclust
fipscheck py-chex r-mcmc
fish py-chronyk r-mcmcglmm
fixesproto py-ci-info r-mcmcpack
fj py-ci-sdr r-mco
fjcontrib py-cinema-lib r-mda
fl py-cinemasci r-memoise
flac py-citeproc-py r-memuse
flamemaster py-clean-text r-mergemaid
flann py-cleo r-metap
flap py-click r-metapod
flash py-click-didyoumean r-methylumi
flashdimmsim py-click-plugins r-mgcv
flatbuffers py-click-repl r-mgraster
flatcc py-cligj r-mice
flcl py-clikit r-microbenchmark
flecsale py-climate r-mime
flecsi py-clint r-minfi
flecsph py-clipboard r-miniui
fleur py-cloudpickle r-minqa
flex py-clustershell r-misc3d
flexi py-cmake r-missmethyl
flexiblas py-cmake-format r-mitml
flibcpp py-cmocean r-mitools
flink py-cmseq r-mixtools
flint py-cmsml r-mlbench
flit py-cnvkit r-mlinterfaces
fltk py-coapthon3 r-mlr
flume py-codecov r-mlrmbo
flux-core py-codepy r-mmwrweek
flux-pmix py-cogent r-mnormt
flux-sched py-coilmq r-mockery
fluxbox py-colorama r-modelmetrics
fms py-colorcet r-modelr
fmt py-colorclass r-modeltools
foam-extend py-colored r-mpm
folly py-colored-traceback r-mscoreutils
font-util py-coloredlogs r-msnbase
fontcacheproto py-colorful r-multcomp
fontconfig py-colorio r-multcompview
fontsproto py-colorlog r-multicool
fonttosfnt py-colormath r-multitaper
form py-colorpy r-multtest
formetis py-colorspacious r-munsell
fortran py-colossalai r-mutoss
fortrilinos py-commonmark r-mvtnorm
fossil py-conan r-mzid
foundationdb py-configargparse r-mzr
fox py-configobj r-nada
fp16 py-configparser r-nanotime
fpc py-configspace r-ncbit
fpchecker py-connectionpool r-ncdf4
fping py-constantly r-network
fplll py-contextily r-networkd3
fplo py-contextlib2 r-neuralnet
fpm py-contexttimer r-nfactors
fpocket py-contextvars r-nimble
fpzip py-contourpy r-nleqslv
fqtrim py-control r-nlme
fr-hit py-convertdate r-nloptr
fraggenescan py-convokit r-nmf
freebayes py-cookiecutter r-nmof
freefem py-cookies r-nnet
freeglut py-copulas r-nnls
freeimage py-correctionlib r-nonnest2
freeipmi py-counter r-nor1mix
freesurfer py-cov-core r-nortest
freetype py-coverage r-np
freexl py-coveralls r-npsurv
fribidi py-cppheaderparser r-numderiv
frontier-client py-cppy r-oligoclasses
frontistr py-crashtest r-openssl
fseq py-crcmod r-openxlsx
fsl py-crispresso r-optimparallel
fslsfonts py-crossmap r-optimx
fstobdf py-cryolobm r-optparse
fstrack py-cryptography r-ordinal
ftgl py-cssselect r-org-hs-eg-db
ftjam py-csvkit r-organismdbi
ftk py-ctgan r-packrat
ftobjectlibrary py-cudf r-pacman
ftxui py-cuml r-paleotree
fujitsu-fftw py-cupy r-pamr
fujitsu-frontistr py-current r-pan
fujitsu-mpi py-cutadapt r-parallelly
fujitsu-ssl2 py-cvxopt r-parallelmap
fullock py-cvxpy r-paramhelpers
funhpc py-cx-oracle r-party
fuse-overlayfs py-cycler r-partykit
fxdiv py-cylp r-patchwork
fxt py-cymem r-pathview
fyba py-cyordereddict r-pbapply
fzf py-cython r-pbdzmq
g2 py-cython-bbox r-pbivnorm
g2c py-cyvcf2 r-pbkrtest
g2o py-d2to1 r-pcamethods
g2tmpl py-dadi r-pcapp
g4abla py-damask r-pegas
g4emlow py-darshan r-permute
g4ensdfstate py-dask r-pfam-db
g4incl py-dask-glm r-phangorn
g4ndl py-dask-ml r-phantompeakqualtools
g4neutronxs py-dask-sphinx-theme r-pheatmap
g4particlexs py-dataclasses r-philentropy
g4photonevaporation py-datacube r-phylobase
g4pii py-datalad r-phyloseq
g4radioactivedecay py-datalad-container r-phylostratr
g4realsurface py-datalad-hirni r-phytools
g4saiddata py-datalad-metadata-model r-picante
g4tendl py-datalad-metalad r-pillar
gamess-ri-mp2-miniapp py-datalad-neuroimaging r-pinfsc50
gams py-datalad-webapp r-pixmap
ganglia py-datasets r-pkgbuild
gapbs py-dateparser r-pkgcache
gapcloser py-datrie r-pkgconfig
gapfiller py-dbf r-pkgdepends
garfieldpp py-dbfread r-pkgdown
gasnet py-deap r-pkgload
gatb-core py-debtcollector r-pkgmaker
gate py-debugpy r-plogr
gatepet2stir py-decorator r-plot3d
gatetools py-deepdiff r-plotly
gatk py-deepecho r-plotmo
gaudi py-deephyper r-plotrix
gaussian py-deepsig r-pls
gaussian-src py-deepsig-biocomp r-plyr
gaussian-view py-deeptools r-pmcmr
gawk py-deeptoolsintervals r-pmcmrplus
gbl py-defusedxml r-png
gblocks py-demjson r-polspline
gcc py-dendropy r-polyclip
gccmakedep py-deprecated r-polynom
gccxml py-deprecation r-pool
gchp py-descartes r-poorman
gconf py-devito r-popgenome
gcta py-devlib r-popvar
gdal py-dgl r-posterior
gdb py-dh-scikit-optimize r-powerlaw
gdbm py-dictdiffer r-prabclus
gdk-pixbuf py-dill r-pracma
gdl py-dipy r-praise
gdrcopy py-discover r-preprocesscore
geant3 py-diskcache r-prettydoc
geant4 py-distance r-prettyunits
geant4-data py-distlib r-proc
geant4-vmc py-distributed r-processx
gearshifft py-distro r-prodlim
gegelati py-django r-profvis
gemma py-dlcpar r-progress
gemmlowp py-dm-haiku r-progressr
genemark-et py-dm-tree r-proj
genesis py-dnaio r-proj4
genfit py-docker r-projpred
gengeo py-dockerpy-creds r-promises
gengetopt py-docopt r-protgenerics
genie py-docutils r-proto
genomefinisher py-docutils-stubs r-proxy
genometools py-dominate r-pryr
genomeworks py-dotnetcore2 r-ps
genrich py-downhill r-pscbs
geode py-doxypy r-pspline
geoip py-doxypypy r-psych
geoip-api-c py-dp-gp-cluster r-ptw
geopm py-dpath r-purrr
geos py-drep r-pvclust
gettext py-drmaa r-qqconf
gflags py-dryscrape r-qs
gfsio py-duecredit r-qtl
gh py-dulwich r-quadprog
ghost py-dunamai r-quantmod
ghostscript py-dvc r-quantreg
ghostscript-fonts py-dxchange r-quantro
giblib py-dxfile r-questionr
giflib py-earthengine-api r-quickplot
ginac py-easybuild-easyblocks r-qvalue
ginkgo py-easybuild-easyconfigs r-r-cache
giraph py-easybuild-framework r-r-methodss3
git py-eccodes r-r-oo
git-annex py-ecdsa r-r-utils
git-fat-git py-ecos r-r6
git-imerge py-edffile r-ragg
git-lfs py-editables r-rainbow
gitconddb py-editdistance r-randomfields
gl2ps py-edlib r-randomfieldsutils
glab py-efficientnet-pytorch r-randomforest
glew py-eg r-randomglm
glfmultiples py-einops r-ranger
glfw py-elasticsearch r-rann
glib py-elephant r-rapidjsonr
glib-networking py-emcee r-rapiserialize
glibmm py-emoji r-rappdirs
glimmer py-empy r-raster
glm py-entrypoints r-rbgl
global py-enum34 r-rbibutils
globalarrays py-envisage r-rbokeh
glog py-ephem r-rcmdcheck
gloo py-epydoc r-rcolorbrewer
glpk py-espresso r-rcpp
glproto py-espressopp r-rcppannoy
gluegen py-et-xmlfile r-rcpparmadillo
glusterfs py-etelemetry r-rcppblaze
glvis py-eventlet r-rcppcctz
glx py-execnet r-rcppcnpy
gmake py-executing r-rcppdate
gmap-gsnap py-exhale r-rcppde
gmime py-exifread r-rcppeigen
gmodel py-exodus-bundler r-rcppgsl
gmp py-extension-helpers r-rcpphnsw
gmsh py-extras r-rcppml
gmt py-ez-setup r-rcppparallel
gmtsar py-f90nml r-rcppprogress
gnat py-f90wrap r-rcpproll
gnds py-fabric r-rcpptoml
gnome-common py-faker r-rcppziggurat
gnuconfig py-falcon r-rcurl
gnupg py-fallocate r-rda
gnuplot py-fastai r-rdpack
gnuradio py-fastaindex r-readbitmap
gnutls py-fastavro r-readr
go py-fastcache r-readxl
go-bootstrap py-fastcluster r-reams
go-md2man py-fastcore r-recipes
gobject-introspection py-fastcov r-registry
goblin-hmc-sim py-fastdownload r-rematch
goma py-fastdtw r-rematch2
google-crc32c py-fasteners r-remotes
googletest py-fastjsonschema r-renv
gosam-contrib py-fastprogress r-reordercluster
goshimmer py-fastrlock r-reportingtools
gotcha py-faststructure r-repr
gource py-fava r-reprex
gpcnet py-fenics-basix r-reproducible
gpdb py-fenics-dijitso r-require
gperf py-fenics-dolfinx r-reshape
gperftools py-fenics-ffc r-reshape2
gpgme py-fenics-ffcx r-restfulr
gpi-2 py-fenics-fiat r-reticulate
gpi-space py-fenics-instant r-rex
gplates py-fenics-ufl r-rfast
gprolog py-filelock r-rferns
gptl py-filemagic r-rgdal
gptune py-filterpy r-rgenoud
gpu-burn py-findlibs r-rgeos
gqrx py-fiona r-rgexf
gr-osmosdr py-fire r-rgl
grabix py-fiscalyear r-rgooglemaps
grace py-fisher r-rgraphviz
grackle py-fits-tools r-rhdf5
gradle py-fitter r-rhdf5filters
grads py-fixtures r-rhdf5lib
grafana py-flake8 r-rhmmer
grandr py-flake8-import-order r-rhtslib
graph500 py-flake8-polyfill r-rinside
graphblast py-flameprof r-rio
graphicsmagick py-flask r-rjags
graphite2 py-flask-babel r-rjava
graphlib py-flask-compress r-rjson
graphmap py-flask-cors r-rjsonio
graphviz py-flask-restful r-rlang
grass py-flask-socketio r-rle
graylog2-server py-flatbuffers r-rmariadb
grep py-flatten-dict r-rmarkdown
grib-api py-flawfinder r-rminer
grib-util py-flexmock r-rmpfr
grid py-flexx r-rmpi
gridlab-d py-flit r-rms
grnboost py-flit-core r-rmutil
groff py-flufl-lock r-rmysql
gromacs py-flye r-rnaseqmap
gromacs-chain-coordinate py-fn-py r-rncl
gromacs-swaxs py-fonttools r-rnexml
grpc py-ford r-rngtools
gsettings-desktop-schemas py-formatizer r-rnoaa
gsl py-formulaic r-robust
gslib py-fortran-language-server r-robustbase
gtk-doc py-fortranformat r-roc
gtkmm py-fparser r-rocr
gtkorvo-atl py-fprettify r-rodbc
gtkorvo-cercs-env py-fracridge r-rook
gtkorvo-dill py-freezegun r-rots
gtkorvo-enet py-frozenlist r-roxygen2
gtkplus py-fs r-rpart
gtksourceview py-fsspec r-rpart-plot
gts py-ftfy r-rpmm
guacamole-client py-funcsigs r-rpostgres
guacamole-server py-functools32 r-rpostgresql
guidance py-funcy r-rprojroot
guile py-fury r-rpsychi
gunrock py-fusepy r-rrblup
gurobi py-future r-rrcov
gxsview py-futures r-rrpp
gzip py-fuzzywuzzy r-rsamtools
h2database py-fypp r-rsconnect
h5bench py-gast r-rsnns
h5cpp py-gcovr r-rsolnp
h5hut py-gcs-oauth2-boto-plugin r-rspectra
h5part py-gdbgui r-rsqlite
h5utils py-gdc-client r-rstan
h5z-zfp py-gee-asset-manager r-rstantools
hacckernels py-geeadd r-rstatix
hackrf-host py-geeup r-rstudioapi
hadoop py-gemini r-rsvd
hadoop-xrootd py-genders r-rtracklayer
hal py-geneimpacts r-rtsne
halc py-genshi r-runit
half py-gensim r-runjags
hama py-geoalchemy2 r-ruv
hapcut2 py-geocube r-rvcheck
hapdip py-geographiclib r-rversions
haploview py-geopandas r-rvest
haproxy py-geoplot r-rviennacl
hardlink py-geopy r-rzmq
harfbuzz py-getorganelle r-s2
harminv py-gevent r-s4vectors
hashcat py-gf256 r-samr
haveged py-gffutils r-sandwich
hazelcast py-ghp-import r-sass
hbase py-gimmik r-satellite
hbm-dramsim2 py-gin-config r-scaledmatrix
hc py-git-review r-scales
hcoll py-gitdb r-scater
hdf py-gitpython r-scattermore
hdf-eos2 py-glmnet r-scatterpie
hdf-eos5 py-glmsingle r-scatterplot3d
hdf5 py-glob2 r-scdblfinder
hdf5-blosc py-globus-sdk r-scran
hdf5-vfd-gds py-gluoncv r-scrime
hdf5-vol-async py-glymur r-sctransform
hdf5-vol-cache py-gnuplot r-scuttle
hdf5-vol-external-passthrough py-goatools r-sdmtools
hdf5-vol-log py-gooey r-segmented
hdfview py-google r-selectr
healpix-cxx py-google-api-core r-seqinr
heaptrack py-google-api-python-client r-seqlogo
heasoft py-google-apitools r-servr
heffte py-google-auth r-sessioninfo
helib py-google-auth-httplib2 r-seurat
helics py-google-auth-oauthlib r-seuratobject
help2man py-google-cloud-core r-sf
henson py-google-cloud-storage r-sfheaders
hepmc py-google-crc32c r-sfsmisc
hepmc3 py-google-pasta r-sftime
hepmcanalysis py-google-resumable-media r-shadowtext
heppdt py-googleapis-common-protos r-shape
heputils py-googledrivedownloader r-shiny
hercules py-gosam r-shinydashboard
hermes py-gpaw r-shinyfiles
herwig3 py-gpustat r-shinyjs
herwigpp py-gputil r-shinystan
hevea py-gpy r-shinythemes
hh-suite py-gpyopt r-shortread
hibench py-gpytorch r-siggenes
hic-pro py-gql r-signac
hicolor-icon-theme py-grandalf r-simpleaffy
hicops py-grapheme r-singlecellexperiment
highfive py-graphlib-backport r-sitmo
highway py-graphql-core r-sm
highwayhash py-graphviz r-smoof
hiop py-greenlet r-sn
hip py-grequests r-snakecase
hip-rocclr py-griddataformats r-snow
hipace py-griffe r-snowfall
hipblas py-grpcio r-snprelate
hipcub py-grpcio-tools r-snpstats
hipfft py-gsd r-som
hipfort py-gsi r-somaticsignatures
hipify-clang py-gsutil r-sourcetools
hipsolver py-gtdbtk r-sp
hipsparse py-guidata r-spacetime
hipsycl py-guiqwt r-spades
hiredis py-gym r-spades-addins
hisat2 py-h11 r-spades-core
hisea py-h2 r-spades-tools
hive py-h5glance r-spam
hivex py-h5netcdf r-sparsem
hmmer py-h5py r-sparsematrixstats
hohqmesh py-h5sh r-spatial
homer py-hacking r-spatialeco
hoomd-blue py-haphpipe r-spatialpack
hoppet py-hatch-fancy-pypi-readme r-spatialreg
hotspot py-hatch-vcs r-spatstat
hpcc py-hatchet r-spatstat-core
hpccg py-hatchling r-spatstat-data
hpcg py-hclust2 r-spatstat-explore
hpctoolkit py-hdbscan r-spatstat-geom
hpcviewer py-hdfs r-spatstat-linnet
hpcx-mpi py-healpy r-spatstat-random
hpddm py-heapdict r-spatstat-sparse
hpgmg py-hep-ml r-spatstat-utils
hping py-hepdata-converter r-spdata
hpl py-hepdata-lib r-spdep
hpx py-hepdata-validator r-speedglm
hpx-kokkos py-hepunits r-spem
hpx5 py-hieroglyph r-splancs
hsa-rocr-dev py-hiredis r-splitstackshape
hsakmt py-hist r-sqldf
hsakmt-roct py-histbook r-squarem
hsf-cmaketools py-histogrammar r-squash
hssp py-histoprint r-sseq
hstr py-holland-backup r-stabledist
hto4l py-horovod r-stanheaders
htop py-hpack r-stargazer
htslib py-hpbandster r-stars
http-get py-hpcbench r-statmod
http-load py-hpccm r-statnet-common
http-parser py-hstspreload r-stringfish
http-ping py-html2text r-stringi
http-post py-html5lib r-stringr
httpd py-htmlgen r-strucchange
httperf py-htseq r-strucchangercpp
httpie py-httpbin r-styler
httping py-httpcore r-subplex
httpress py-httplib2 r-summarizedexperiment
hub py-httpretty r-suppdists
hudi py-httpstan r-survey
hugo py-httptools r-survival
hunspell py-httpx r-sva
hw-probe py-huggingface-hub r-svglite
hwdata py-humanfriendly r-sys
hwloc py-humanize r-systemfonts
hybpiper py-hvac r-tarifx
hybrid-lambda py-hypercorn r-taxizedb
hybridsim py-hyperframe r-tclust
hydra py-hyperlink r-teachingdemos
hydrogen py-hyperopt r-tensor
hypar py-hypothesis r-tensora
hyperfine py-ibm-cloud-sdk-core r-terra
hyperqueue py-ibm-watson r-tester
hyperscan py-ics r-testit
hyphen py-identify r-testthat
hyphy py-idna r-textshaping
hypre py-idna-ssl r-tfbstools
hypre-cmake py-illumina-utils r-tfisher
hztool py-ilmbase r-tfmpvalue
i3 py-imageio r-th-data
ibm-databroker py-imageio-ffmpeg r-threejs
ibm-java py-imagesize r-tibble
ibmisc py-imgaug r-tictoc
icarus py-iminuit r-tidycensus
iceauth py-immutabledict r-tidygraph
icedtea py-immutables r-tidyr
icet py-importlib r-tidyselect
ico py-importlib-metadata r-tidytree
icu4c py-importlib-resources r-tidyverse
id3lib py-incremental r-tiff
idba py-inference-schema r-tigris
idl py-inheritance r-timechange
iegenlib py-iniconfig r-timedate
ignite py-iniparse r-tinytex
igprof py-installer r-tmixclust
igraph py-instrain r-tmvnsim
igv py-intbitset r-topgo
igvtools py-intel-openmp r-treeio
ike-scan py-intensity-normalization r-triebeard
ilmbase py-interface-meta r-trimcluster
ima-evm-utils py-intervaltree r-truncdist
imagemagick py-invoke r-truncnorm
imake py-iocapture r-trust
imath py-ipaddress r-tseries
imgui py-ipdb r-tsne
imlib2 py-ipycanvas r-ttr
imp py-ipyevents r-tweenr
impalajit-llvm py-ipykernel r-txdb-hsapiens-ucsc-hg18-knowngene
improved-rdock py-ipympl r-txdb-hsapiens-ucsc-hg19-knowngene
impute2 py-ipyparallel r-tximport
infernal py-ipython r-tximportdata
influxdb py-ipython-cluster-helper r-tzdb
iniparser py-ipython-genutils r-ucminf
inputproto py-ipyvtk-simple r-udunits2
intel py-ipywidgets r-units
intel-daal py-irpf90 r-upsetr
intel-gpu-tools py-isal r-urca
intel-gtpin py-iso8601 r-urlchecker
intel-ipp py-isodate r-urltools
intel-llvm py-isort r-usethis
intel-mkl py-itk r-utf8
intel-mpi py-itsdangerous r-uuid
intel-mpi-benchmarks py-jaconv r-uwot
intel-oneapi-advisor py-jamo r-v8
intel-oneapi-ccl py-jaraco-classes r-variantannotation
intel-oneapi-compilers py-jaraco-functools r-varselrf
intel-oneapi-compilers-classic py-javaproperties r-vcd
intel-oneapi-dal py-jax r-vcfr
intel-oneapi-dnn py-jaxlib r-vctrs
intel-oneapi-dpct py-jdatetime r-vegan
intel-oneapi-dpl py-jdcal r-vfs
intel-oneapi-inspector py-jedi r-vgam
intel-oneapi-ipp py-jeepney r-vioplot
intel-oneapi-ippcp py-jellyfish r-vipor
intel-oneapi-itac py-jinja2 r-viridis
intel-oneapi-mkl py-jinja2-time r-viridislite
intel-oneapi-mpi py-jmespath r-visnetwork
intel-oneapi-tbb py-jmp r-vroom
intel-oneapi-vpl py-joblib r-vsn
intel-oneapi-vtune py-jplephem r-waldo
intel-parallel-studio py-jprops r-watermelon
intel-pin py-jpype1 r-webshot
intel-tbb py-jsmin r-wgcna
intel-xed py-json-get r-whisker
interproscan py-json5 r-withr
intltool py-jsondiff r-wk
ioapi py-jsonpatch r-xde
ior py-jsonpath-ng r-xfun
iozone py-jsonpickle r-xgboost
ip py-jsonpointer r-xlconnect
ip2 py-jsonref r-xlconnectjars
ipcalc py-jsonschema r-xlsx
iperf2 py-junit-xml r-xlsxjars
iperf3 py-jupyter r-xmapbridge
ipopt py-jupyter-client r-xml
iproute2 py-jupyter-console r-xml2
iptraf-ng py-jupyter-core r-xnomial
iq-tree py-jupyter-packaging r-xopen
iqtree2 py-jupyter-packaging11 r-xtable
irep py-jupyter-packaging7 r-xts
isaac py-jupyter-server r-xvector
isaac-server py-jupyter-server-mathjax r-yaimpute
isc-dhcp py-jupyter-telemetry r-yaml
isescan py-jupyterhub r-yapsa
isl py-jupyterlab r-yaqcaffy
iso-codes py-jupyterlab-pygments r-yarn
ispc py-jupyterlab-server r-yulab-utils
istio py-jupyterlab-widgets r-zcompositions
itensor py-jupytext r-zeallot
itk py-kaggle r-zip
itstool py-kaldiio r-zlibbioc
itsx py-keras r-zoo
iwyu py-keras-applications r3d
jackcess py-keras-preprocessing rabbitmq
jafka py-keras2onnx racket
jags py-kerberos racon
jali py-keyboard raft
jansi py-keyring ragel
jansi-native py-keyrings-alt raja
jansson py-keystoneauth1 ramulator
jasper py-kitchen randfold
jbigkit py-kiwisolver random123
jblob py-kmodes randrproto
jchronoss py-knack range-v3
jdk py-kombu rankstr
jellyfish py-kornia rapidjson
jemalloc py-kosh raptor2
jetty-project py-kubernetes rasdaemon
jhpcn-df py-labours rasqal
jimtcl py-lap ratel
jline3 py-lark ravel
jmol py-lark-parser raxml
jogl py-laspy raxml-ng
jose py-latexcodec ray
jpegoptim py-law rccl
jq py-lazy rccl-tests
json-c py-lazy-object-proxy rclone
json-cwx py-lazy-property rdc
json-fortran py-lazyarray rdkit
json-glib py-leather rdma-core
jsoncpp py-lerc rdp-classifier
jsonnet py-lhsmdu rdptools
jstorm py-liac-arff re2
jube py-libclang re2c
judy py-libconf readfq
julea py-libensemble readline
julia py-liblas recola
junit4 py-librosa recola-sm
justbuild py-lifelines recon
jxrlib-debian py-lightgbm recorder
k8 py-lightning-lite recordproto
kadath py-lightning-utilities redis
kafka py-ligo-segments redis-plus-plus
kahip py-line-profiler reditools
kaiju py-linear-operator redland
kakoune py-linecache2 redland-bindings
kaks-calculator py-lineenhancer redset
kaldi py-lit redundans
kalign py-lizard reframe
kallisto py-llnl-sina regcm
karma py-llvmlite relax
kassiopeia py-lmdb relion
kbd py-lmfit remhos
kbproto py-lmodule rempi
kcov py-localcider rename
kdiff3 py-locket rendercheck
kea py-lockfile renderproto
kealib py-logilab-common repeatmasker
keepalived py-loguru repeatmodeler
keepassxc py-louie repeatscout
kentutils py-lru-dict reprimand
keyutils py-lscsoft-glue resourceproto
kibana py-luigi restic
kicad py-lws revbayes
kim-api py-lxml revocap-coupler
kinesis py-lz4 revocap-refiner
kineto py-lzstring rgb
kitty py-m2r rhash
kmergenie py-macholib rinetd
kmod py-machotools ripgrep
knem py-macs2 riscv-gnu-toolchain
kokkos py-maestrowf rivet
kokkos-kernels py-magic rkt-base
kokkos-kernels-legacy py-mailchecker rkt-cext-lib
kokkos-legacy py-make rkt-compiler-lib
kokkos-nvcc-wrapper py-mako rkt-dynext-lib
kraken py-mapclassify rkt-rackunit-lib
kraken2 py-markdown rkt-scheme-lib
krakenuniq py-markdown-include rkt-testing-util-lib
krb5 py-markdown-it-py rkt-zo-lib
krims py-markdown2 rlwrap
kripke py-markovify rmats
kubernetes py-markupsafe rmgdft
kvasir-mpl py-marshmallow rmlab
kvtree py-matplotlib rna-seqc
kylin py-matplotlib-inline rnaquast
ladot py-mayavi rnaz
laghos py-mccabe rng-tools
lame py-md-environ rngstreams
lammps py-mdanalysis rnpletal
landsfcutil py-mdit-py-plugins roary
lanl-cmake-modules py-mechanize rocalution
lapackpp py-medaka rocblas
last py-meldmd rocfft
lastz py-memory-profiler rocketmq
laszip py-memprof rocksdb
latex2html py-memray rockstar
latte py-mercantile rocm-bandwidth-test
launchmon py-mergedeep rocm-clang-ocl
lazyten py-merlin rocm-cmake
lbann py-meshio rocm-dbgapi
lbxproxy py-meson-python rocm-debug-agent
lbzip2 py-metaphlan rocm-device-libs
lcals py-metasv rocm-gdb
lcgenv py-methylcode rocm-opencl
lcio py-metpy rocm-openmp-extras
lcms py-mffpy rocm-smi
lcov py-mg-rast-tools rocm-smi-lib
ldak py-mido rocm-tensile
ldc py-mikado rocm-validation-suite
ldc-bootstrap py-minio rocminfo
legion py-minrpc rocprim
lemon py-misopy rocprofiler-dev
leptonica py-mistune rocrand
lerc py-mixedhtseq rocsolver
less py-mizani rocsparse
lesstif py-mkdocs rocthrust
leveldb py-mkdocs-autorefs roctracer-dev
lftp py-mkdocs-jupyter roctracer-dev-api
lhapdf py-mkdocs-material rocwmma
lhapdf5 py-mkdocs-material-extensions rodinia
lhapdfsets py-mkdocstrings roms
libabigail py-mkdocstrings-python root
libaec py-ml-collections rose
libaio py-mlperf-logging ross
libao py-mlxtend routinator
libapplewm py-mmcv routino
libapreq2 py-mmtf-python rpcsvc-proto
libarchive py-mne rpm
libasr py-mo-pack rr
libassuan py-mock rrdtool
libatasmart py-modin rsbench
libatomic-ops py-modred rsem
libbacktrace py-moltemplate rsl
libbeagle py-monotonic rstart
libbeato py-monty rstudio
libbigwig py-more-itertools rsync
libbinio py-motmetrics rsyslog
libblastrampoline py-motor rt-tests
libbsd py-mouseinfo rtags
libbson py-moviepy rtax
libbytesize py-mpi4py ruby
libc py-mpld3 ruby-asciidoctor
libcanberra py-mplhep ruby-erubis
libcap py-mplhep-data ruby-gnuplot
libcap-ng py-mpmath ruby-hpricot
libcatalyst py-mrcfile ruby-mustache
libceed py-msal ruby-narray
libcerf py-msal-extensions ruby-rake
libcgroup py-msgpack ruby-rdiscount
libcint py-msgpack-numpy ruby-ronn
libcircle py-msrest ruby-rubyinline
libconfig py-msrestazure ruby-svn2git
libconfuse py-multi-key-dict ruby-terminal-table
libcroco py-multidict ruby-thor
libctl py-multipledispatch ruby-tmuxinator
libcudf py-multiprocess ruby-unicode-display-width
libcuml py-multiqc ruby-xdg
libcumlprims py-munch ruby-zentest
libcxxwrap-julia py-murmurhash runc
libcyaml py-mutagen rust
libdaemon py-mx rust-bindgen
libdap4 py-mxfold2 sabre
libdatrie py-myhdl saga-gis
libdc1394 py-mypy sailfish
libdeflate py-mypy-extensions salmon
libdistributed py-mysql-connector-python salmon-tddft
libdivsufsort py-mysqlclient salome-configuration
libdmx py-mysqldb1 salome-med
libdrm py-myst-parser salome-medcoupling
libdwarf py-nanotime sam2p
libeatmydata py-nara-wpe sambamba
libecpint py-natsort samblaster
libedit py-nbclassic samrai
libefence py-nbclient samtools
libelf py-nbconvert sandbox
libemos py-nbdime sarus
libepoxy py-nbformat satsuma2
libestr py-nbmake savanna
libev py-nbsphinx saws
libevdev py-nbval sblim-sfcc
libevent py-nc-time-axis sbml
libevpath py-ncbi-genome-download sbp
libexif py-ndg-httpsclient sbt
libfabric py-neo scala
libfastcommon py-neobolt scalasca
libfastjson py-neotime scale
libffi py-neovim-remote scallop
libffs py-nest-asyncio scalpel
libfive py-nestle scan-for-matches
libflame py-netaddr scantailor
libfms py-netcdf4 scipoptsuite
libfontenc py-netifaces scitokens-cpp
libfs py-netket scons
libfuse py-networkit scorec-core
libfyaml py-networkx scorep
libgain py-neurokit2 scorpio
libgcrypt py-neurolab scotch
libgd py-neurora scr
libgeotiff py-nibabel screen
libgff py-nibetaseries scripts
libgit2 py-nilearn scrnsaverproto
libgpg-error py-ninja scrot
libgpuarray py-nipype scs
libgridxc py-nistats sctk
libgssglue py-nitransforms sdl2
libgta py-niworkflows sdl2-image
libgtextutils py-nltk sdsl-lite
libharu py-node-semver seacas
libhbaapi py-nodeenv seal
libheif py-nose sed
libhio py-nose-cov sensei
libhugetlbfs py-nose2 sentencepiece
libiberty py-nosexcover sentieon-genomics
libibumad py-notebook sepp
libical py-npx seq-gen
libice py-ntlm-auth seqan
libiconv py-ntplib seqkit
libid3tag py-num2words seqprep
libidl py-numba seqtk
libidn2 py-numcodecs serf
libimagequant py-numexpr serialbox
libimobiledevice py-numexpr3 sessreg
libinih py-numpy setserial
libint py-numpy-quaternion setxkbmap
libisal py-numpydoc sfcgal
libiscsi py-nvidia-ml-py sfcio
libjpeg py-nvidia-ml-py3 sga
libjpeg-turbo py-oauth2client sgpp
libjson py-oauthlib shadow
libjwt py-ocp-models shapeit
libjxl py-odc-geo shapeit4
libkcapi py-olefile shapelib
libkml py-omegaconf shared-mime-info
libksba py-onnx shark
liblas py-onnx-runtime shc
liblbfgs py-onnxconverter-common shengbte
liblbxutil py-onnxmltools sherpa
liblockfile py-ont-fast5-api shiny-server
liblognorm py-opcodes shiro
liblouis py-opencensus shocklibs
libluv py-opencensus-context shoremap
liblzf py-openidc-client shortbred
libmacaroons py-openmc shortstack
libmad py-openpmd-validator showfont
libmatheval py-openpmd-viewer shtools
libmaus2 py-openpyxl shuffile
libmaxminddb py-openslide-python sickle
libmbim py-opentuner sicm
libmcrypt py-opppy siesta
libmd py-opt-einsum sigcpp
libmesh py-or-tools sigio
libmetalink py-ordered-set signalp
libmicrodns py-ordereddict signify
libmicrohttpd py-os-service-types silo
libmmtf-cpp py-oset simde
libmng py-oslo-config simgrid
libmnl py-oslo-i18n simmetrix-simmodsuite
libmo-unpack py-oslo-serialization simple-dftd3
libmodbus py-oslo-utils simplemoc
libmonitor py-osqp simsipm
libmpdclient py-overpy simul
libnbc py-owslib simulationio
libndp py-pacifica-downloader sina
libnet py-pacifica-namespace singularity
libnetfilter-conntrack py-pacifica-uploader singularity-eos
libnetfilter-cthelper py-packaging singularity-legacy
libnetfilter-cttimeout py-pager singularityce
libnetfilter-queue py-palettable sio
libnetworkit py-pamela sionlib
libnfnetlink py-panaroo sirius
libnfs py-pandas sjpeg
libnfsidmap py-pandocfilters skilion-onedrive
libnftnl py-param skopeo
libnids py-parameterized sl
libnl py-paramiko slang
libnotify py-paramz slate
libnova py-parasail sleef
libnrm py-parmed slepc
libnsl py-parse slf4j
libogg py-parsedatetime slider
liboldx py-parsimonious slirp4netns
libopts py-parsl sloccount
libp11 py-parso slurm
libpam py-partd slurm-drmaa
libpaper py-particle smalt
libpcap py-pastel smartdenovo
libpciaccess py-patch-ng smartmontools
libpeas py-path-py smof
libpfm4 py-pathlib smproxy
libpipeline py-pathlib2 snakemake
libplist py-pathml snap
libpmemobj-cpp py-pathos snap-berkeley
libpng py-pathspec snap-korf
libpressio py-pathtools snappy
libpressio-adios2 py-patool snbone
libpressio-errorinjector py-patsy sniffles
libpressio-nvcomp py-pauvre snpeff
libpressio-opt py-pbr snphylo
libpressio-rmetric py-pdbfixer snptest
libpressio-sperr py-pdm-pep517 soapdenovo-trans
libpressio-tools py-pdoc3 soapdenovo2
libpressio-tthresh py-peachpy socat
libproxy py-pem soci
libpsl py-pep517 sofa-c
libpsml py-pep8 sollve
libpthread-stubs py-pep8-naming sollya
libpulsar py-performance solr
libqglviewer py-periodictable somatic-sniper
libqrencode py-petastorm sombrero
libquo py-petname sonlib
libraqm py-petsc4py sortmerna
libraw1394 py-pexpect sos
librdkafka py-phonenumbers sosflow
librelp py-phonopy source-highlight
libressl py-phydms sowing
libristra py-phylophlan sox
librmm py-pickle5 sp
librom py-pickleshare spack
librsb py-picmistandard spades
librsvg py-picrust span-lite
librtlsdr py-picrust2 spark
librttopo py-pid sparrow
libsakura py-pika sparse
libsamplerate py-pil sparsehash
libseccomp py-pillow sparskit
libsecret py-pillow-simd sparta
libsharp py-pint spath
libshm py-pip spdlog
libsigcpp py-pipits specfem3d-globe
libsignal-protocol-c py-pispino spectra
libsigsegv py-pkgconfig spectre
libslirp py-pkginfo spectrum-mpi
libsm py-pkgutil-resolve-name speex
libsndfile py-plac speexdsp
libsodium py-planar sperr
libspatialindex py-planet spfft
libspatialite py-platformdirs spglib
libspiro py-plotly sph2pipe
libsplash py-plotnine spherepack
libspng py-pluggy spindle
libssh py-ply spiner
libssh2 py-pmw spiral-package-fftx
libstdcompat py-pmw-patched spiral-package-hcol
libsvm py-pockets spiral-package-mpi
libszip py-poetry spiral-package-simt
libtar py-poetry-core spiral-software
libtasn1 py-poetry-dynamic-versioning spla
libtermkey py-poetry-plugin-export spm
libthai py-pomegranate spot
libtheora py-pooch sprng
libtiff py-portalocker sqlcipher
libtirpc py-portend sqlite
libtlx py-poster sqlite-jdbc
libtomlc99 py-pot sqlitebrowser
libtommath py-pox sqoop
libtool py-poyo squashfs
libtorrent py-ppft squashfs-mount
libtree py-pprintpp squashfuse
libuecc py-pre-commit squid
libunistring py-preshed sra-tools
libunwind py-pretrainedmodels sratoolkit
libusb py-prettytable srilm
libusbmuxd py-priority sse2neon
libuser py-profilehooks sshfs
libuuid py-proglog sshpass
libuv py-progress ssht
libuv-julia py-progressbar2 ssmtp
libvdwxc py-progressbar33 sspace-longread
libverto py-projectq sspace-standard
libvips py-prometheus-client sst-core
libvorbis py-promise sst-dumpi
libvori py-prompt-toolkit sst-elements
libvpx py-protobuf sst-macro
libvterm py-prov sst-transports
libwebp py-prwlock stacks
libwebsockets py-pspamm staden-io-lib
libwhich py-psutil star
libwindowswm py-psyclone star-ccm-plus
libx11 py-psycopg2 starlight
libxau py-ptyprocess starpu
libxaw py-pudb startup-notification
libxaw3d py-pulp stat
libxc py-pure-eval stata
libxcb py-pure-sasl static-analysis-suite
libxcomposite py-py stc
libxcrypt py-py-cpuinfo stdexec
libxcursor py-py-spy steps
libxdamage py-py2bit stinger
libxdmcp py-py2cairo storm
libxevie py-py2neo stow
libxext py-py4j strace
libxfixes py-py6s stream
libxfont py-pyaestro strelka
libxfont2 py-pyamg stress
libxfontcache py-pyaml stress-ng
libxft py-pyani stressapptest
libxi py-pyarrow string-view-lite
libxinerama py-pyasn1 stringtie
libxkbcommon py-pyasn1-modules stripack
libxkbfile py-pyassimp structure
libxkbui py-pyautogui strumpack
libxml2 py-pybedtools su2
libxmu py-pybids sublime-text
libxp py-pybigwig subread
libxpm py-pybind11 subversion
libxpresent py-pybind11-stubgen suite-sparse
libxprintapputil py-pybobyqa sumaclust
libxprintutil py-pybrain sumo
libxrandr py-pybtex sundials
libxrender py-pybtex-docutils suntans
libxres py-pycairo superchic
libxscrnsaver py-pycares superlu
libxshmfence py-pycbc superlu-dist
libxslt py-pychecker superlu-mt
libxsmm py-pycifrw supernova
libxstream py-pycmd survey
libxt py-pycocotools sw4lite
libxtrap py-pycodestyle swan
libxtst py-pycompadre swap-assembler
libxv py-pycortex swarm
libxvmc py-pycosat swfft
libxxf86dga py-pycparser swftools
libxxf86misc py-pycrypto swiftsim
libxxf86vm py-pyct swig
libyaml py-pycuda swipl
libyogrt py-pycurl symengine
libzip py-pydantic symlinks
libzmq py-pydap sympol
liggghts py-pydatalog sys-sage
lighttpd py-pydeprecate sysbench
ligra py-pydeps syscalc
likwid py-pydicom sysfsutils
linkphase3 py-pydispatcher sysget
linktest py-pydmd sysstat
linsys-v py-pydocstyle systemc
linux-headers py-pydoe systemtap
linux-pam py-pydoe2 sz
lis py-pydot sz-cpp
listres py-pydot2 sz3
lizard py-pydotplus szauto
lksctp-tools py-pydv tabix
llvm py-pyeda tajo
llvm-amdgpu py-pyelftools talass
llvm-doe py-pyem talloc
llvm-openmp py-pyepsg tamaas
llvm-openmp-ompt py-pyface tangram
lm-sensors py-pyfaidx tantan
lmbench py-pyfasta tar
lmdb py-pyfftw targetp
lmod py-pyfiglet task
lndir py-pyfits taskd
lodepng py-pyflakes taskflow
log4c py-pyfr tasmanian
log4cplus py-pygdal tassel
log4cpp py-pygdbmi tau
log4cxx py-pygelf tauola
logrotate py-pygeos tbl2asn
logstash py-pygetwindow tcl
loki py-pygit2 tcl-itcl
looptools py-pygithub tcl-tcllib
lordec py-pyglet tcl-tclxml
lorene py-pygments tclap
lp-solve py-pygments-pytest tcoffee
lrslib py-pygobject tcpdump
lrzip py-pygps tcptrace
lsf py-pygpu tcsh
lshw py-pygraphviz tdengine
lsof py-pygresql tealeaf
lsscsi py-pygtk teckit
ltp py-pygtrie tecplot
ltr-retriever py-pyh5md telegraf
ltrace py-pyheadtail tempestremap
lua py-pyinstrument templight
lua-bit32 py-pyinstrument-cext templight-tools
lua-bitlib py-pyjnius tengine
lua-ffi py-pyjwt tensorflow-serving-client
lua-lpeg py-pyke tensorpipe
lua-luafilesystem py-pykml termcap
lua-luajit py-pykokkos-base tesseract
lua-luajit-openresty py-pykwalify testdfsio
lua-luaposix py-pylab-sdk testu01
lua-mpack py-pylatex tetgen
lua-sol2 py-pylev tethex
lucene py-pyliblzma texinfo
luit py-pylikwid texlive
lulesh py-pylint texstudio
lumpy-sv py-pylops textparser
lustre py-pymatgen tfel
lvarray py-pymc3 the-platinum-searcher
lvm2 py-pymdown-extensions the-silver-searcher
lwgrp py-pymeeus thepeg
lwm2 py-pyminifier thornado-mini
lwtnn py-pymol thrift
lxc py-pymongo thrust
lynx py-pymoo tidy-html5
lz4 py-pymorph tig
lzma py-pympler time
lzo py-pymsgbox timedatex
lzop py-pymumps timemory
m4 py-pymysql tini
macfuse py-pynacl tinker
macsio py-pynio tinygltf
mad-numdiff py-pynisher tinyobjloader
madgraph5amc py-pynn tinyxml
madx py-pynndescent tinyxml2
mafft py-pynvim tioga
magics py-pynvml tippecanoe
magma py-pyodbc tiptop
mahout py-pyomo tix
makedepend py-pyopencl tixi
maker py-pyopenssl tk
mallocmc py-pypar tkrzw
maloc py-pyparsing tldd
man-db py-pypdf2 tmalign
manta py-pypeflow tmhmm
mapnik py-pypeg2 tmux
mapserver py-pyperclip tomcat
mapsplice2 py-pyperf toml-f
maq py-pypinyin toml11
margo py-pyprecice tophat
mariadb py-pyprof2html torque
mariadb-c-client py-pyproj totalview
mark py-pyproject-metadata tower-agent
masa py-pypulse tower-cli
mash py-pyqi tpm2-tss
masurca py-pyqt-builder tppred
mathematica py-pyqt4 tracer
matio py-pyqt5 tracy
matlab py-pyqt5-sip tracy-client
maven py-pyquaternion tramonto
maverick py-pyrad transabyss
mawk py-pyrect transdecoder
mbdyn py-pyrevolve transposome
mbedtls py-pyrfr transrate
mc py-pyro-api transset
mcl py-pyro-ppl trapproto
mcpp py-pyro4 tree
mctc-lib py-pyrosar tree-sitter
mcutils py-pyrr treelite
mdsplus py-pyrsistent treesub
mdtest py-pysam trexio
med py-pyscaf trf
meep py-pyscf triangle
mefit py-pyscipopt trident
megadock py-pyscreeze trilinos
megahit py-pyserial trilinos-catalyst-ioss-adapter
melissa py-pyshp trimal
memaxes py-pyside trimgalore
memcached py-pyside2 trimmomatic
meme py-pysimdjson trinity
memkind py-pysmartdl trinotate
memsurfer py-pysocks trnascan-se
memtester py-pysolar truchas
meraculous py-pyspark tskit
mercurial py-pyspellchecker tulip
mercury py-pyspoa turbine
mesa py-pysqlite turbomole
mesa-demos py-pysqlite3 turnserver
mesa-glu py-pystac tut
mesa18 py-pystan twm
meshkit py-pysurfer tycho2
meshtool py-pytailf typhon
meson py-pytaridx typhonio
mesquite py-pytecplot uchardet
metabat py-pytesseract ucx
metaeuk py-pytest udunits
metall py-pytest-arraydiff ufo-core
metaphysicl py-pytest-asyncio ufo-filters
methyldackel py-pytest-benchmark ufs-utils
metis py-pytest-cache ufs-weather-model
metkit py-pytest-check-links uftrace
mfem py-pytest-cov umap
mg py-pytest-cpp umesimd
mgard py-pytest-doctestplus umoci
mgardx py-pytest-fail-slow umpire
mgcfd-op2 py-pytest-flake8 unblur
mgis py-pytest-flakes uncrustify
microbiomeutil py-pytest-forked unibilium
microsocks py-pytest-html unifdef
migraphx py-pytest-httpbin unifyfs
migrate py-pytest-isort unigen
mii py-pytest-metadata unison
millepede py-pytest-mock units
mimalloc py-pytest-mypy unittest-cpp
minc-toolkit py-pytest-openfiles universal-ctags
minced py-pytest-parallel unixodbc
mindthegap py-pytest-pep8 unqlite
miniaero py-pytest-qt unrar
miniamr py-pytest-random-order unuran
miniapp-ascent py-pytest-runner unzip
miniasm py-pytest-timeout upcxx
miniconda2 py-pytest-xdist upp
miniconda3 py-python-benedict uqtk
minife py-python-bioformats uriparser
miniforge3 py-python-box usbutils
minigan py-python-certifi-win32 usearch
minighost py-python-constraint userspace-rcu
minigmg py-python-crfsuite utf8cpp
minimap2 py-python-daemon utf8proc
minimd py-python-dateutil util-linux
minio py-python-docs-theme util-linux-uuid
miniqmc py-python-dotenv util-macros
minisign py-python-editor uvw
minismac2d py-python-engineio vacuumms
minitri py-python-fmask valgrind
minivite py-python-fsutil vampirtrace
minixyce py-python-gitlab vapor
minizip py-python-igraph vardictjava
minuit py-python-javabridge variorum
miopen-hip py-python-jenkins varnish-cache
miopen-opencl py-python-json-logger varscan
miopen-tensile py-python-keystoneclient vasp
miopengemm py-python-ldap vbfnlo
mira py-python-levenshtein vc
miranda py-python-logstash vcftools
mirdeep2 py-python-louvain vcsh
mitofates py-python-lzo vdt
mitos py-python-magic veccore
mivisionx py-python-mapnik vecgeom
mixcr py-python-markdown-math veclibfort
mkfontdir py-python-meep vecmem
mkfontscale py-python-memcached vectorclass-version2
mlhka py-python-oauth2 vegas2
mlirmiopen py-python-picard veloc
mlocate py-python-rapidjson velvet
mlperf-deepcam py-python-slugify velvetoptimiser
mlst py-python-socketio verilator
mmg py-python-subunit verrou
mmv py-python-swiftclient vesta
moab py-python-utils vgm
mochi-margo py-python-xlib videoproto
mochi-thallium py-python-xmp-toolkit viennarna
model-traits py-python3-xlib viewres
modeltest-ng py-pythonqwt vifi
modern-wheel py-pythonsollya vigra
modylas py-pythran vim
mofem-cephas py-pytimeparse virtest
mofem-fracture-module py-pytoml virtualgl
mofem-minimal-surface-equation py-pytools virtuoso
mofem-users-modules py-pytorch-gradual-warmup-lr visit
mokutil py-pytorch-lightning visit-cgns
molcas py-pytorch-sphinx-theme visit-ffp
molden py-pyts visit-mfem
mongo-c-driver py-pytweening visit-silo
mongo-cxx-driver py-pytz visit-unv
mongodb-async-driver py-pyudev vite
mono py-pyugrid vizglow
montage py-pyupgrade vmatch
moosefs py-pyusb vmc
moreutils py-pyutilib vmd
mosh py-pyvcf volk
mosquitto py-pyvista voropp
mothur py-pyvistaqt votca
motif py-pyvolve votca-csg
motioncor2 py-pywavelets votca-csg-tutorials
mount-point-attributes py-pywcs votca-csgapps
mozjs py-pyworld votca-ctp
mpark-variant py-pyyaml votca-tools
mpas-model py-pyyaml-env-tag votca-xtp
mpc py-pyzmq vpfft
mpdecimal py-qiskit-aer vpic
mpe2 py-qiskit-nature vsearch
mpest py-qiskit-terra vsftpd
mpfi py-qmtest vt
mpfr py-qpth vtable-dumper
mpi-bash py-qrcode vtk
mpi-serial py-qsymm vtk-h
mpibind py-qtawesome vtk-m
mpich py-qtconsole vvtest
mpifileutils py-qtpy w3emc
mpilander py-quantities w3m
mpileaks py-quart w3nco
mpip py-quast wannier90
mpir py-quaternionic warpx
mpitrampoline py-qudida watch
mpiwrapper py-queryablelist wayland
mpix-launch-swift py-questionary wayland-protocols
mpl py-radiant-mlhub wcs
mpt py-radical-entk wcslib
mptensor py-radical-gtod webbench
mrbayes py-radical-pilot weechat
mrbench py-radical-saga weighttp
mrchem py-radical-utils wget
mrcpp py-ranger-fm wgrib2
mrnet py-rapidfuzz wgsim
mrtrix3 py-rarfile which
mscgen py-rasterio whip
msgpack-c py-ratelim whizard
mshadow py-ratelimiter wi4mpi
msmc py-raven winbison
msmc2 py-ray windowswmproto
mstk py-rbtools wiredtiger
mt-metis py-rdflib wireshark
mujoco py-rdt wonton
multitail py-readme-renderer wordnet
multitime py-recommonmark workrave
multiverso py-redis wps
mumax py-regex wrf
mummer py-reindent wrf-io
mummer4 py-reportlab wrk
mumps py-repoze-lru wsmancli
munge py-reproject wt
muparser py-requests wtdbg2
muparserx py-requests-ftp wxparaver
muscle py-requests-futures wxpropgrid
muse py-requests-mock wxwidgets
music py-requests-ntlm x11perf
musl py-requests-oauthlib x264
must py-requests-toolbelt xabclib
muster py-requests-unixsocket xalan-c
mutationpp py-resampy xapian-core
mvapich2 py-responses xauth
mvapich2-gdr py-restview xbacklight
mvapich2x py-resultsfile xbiff
mxm py-retry xbitmaps
mxml py-retry-decorator xbraid
mxnet py-retrying xcalc
mysql py-retworkx xcb-demo
mysqlpp py-rfc3986 xcb-proto
n2p2 py-rich xcb-util
nacos py-rich-click xcb-util-cursor
nag py-rios xcb-util-errors
nalu py-rioxarray xcb-util-image
nalu-wind py-rise xcb-util-keysyms
namd py-river xcb-util-renderutil
nano py-rmm xcb-util-wm
nanoflann py-rnacocktail xcb-util-xrm
nanomsg py-rnc2rng xcfun
nanopb py-robotframework xclip
nasm py-rope xclipboard
nauty py-rosdep xclock
navi py-rosdistro xcmiscproto
nbdkit py-rosinstall xcmsdb
ncbi-magicblast py-rosinstall-generator xcompmgr
ncbi-rmblastn py-rospkg xconsole
ncbi-toolkit py-rply xcursor-themes
ncbi-vdb py-rpy2 xcursorgen
nccl py-rq xdbedizzy
nccl-tests py-rsa xdelta
nccmp py-rsatoolbox xditview
ncdu py-rseqc xdm
ncftp py-rst2pdf xdmf3
ncio py-rtree xdotool
ncl py-ruamel-ordereddict xdpyinfo
nco py-ruamel-yaml xdriinfo
ncompress py-ruamel-yaml-clib xedit
ncurses py-rx xerces-c
ncview py-s3cmd xeus
ndiff py-s3fs xev
ndzip py-s3transfer xextproto
neartree py-sacremoses xeyes
nek5000 py-saga-python xf86bigfontproto
nekbone py-salib xf86dga
nekcem py-sanic xf86dgaproto
neko py-scandir xf86driproto
nekrs py-scanpy xf86miscproto
nektar py-schema xf86rushproto
nektools py-scientificpython xf86vidmodeproto
nemsio py-scikit-build xfd
nemsiogfs py-scikit-fmm xfindproxy
neo4j py-scikit-fuzzy xfontsel
neovim py-scikit-image xforms
nest py-scikit-learn xfs
net-snmp py-scikit-learn-extra xfsdump
netcdf-c py-scikit-optimize xfsinfo
netcdf-cxx py-scinum xfsprogs
netcdf-cxx4 py-scipy xfwp
netcdf-fortran py-scooby xgamma
netdata py-scoop xgboost
netgauge py-scp xgc
netgen py-scs xhmm
netkit-ftp py-sdmetrics xhost
netlib-lapack py-sdv xineramaproto
netlib-scalapack py-seaborn xinit
netlib-xblas py-secretstorage xinput
netpbm py-segmentation-models-pytorch xios
netperf py-selectors34 xkbcomp
nettle py-selenium xkbdata
neuron py-semantic-version xkbevd
newt py-semver xkbprint
nextflow py-send2trash xkbutils
nfft py-sentencepiece xkeyboard-config
nfs-ganesha py-sentry-sdk xkill
nfs-utils py-seqeval xlc
nghttp2 py-seriate xlf
nginx py-serpent xload
ngmerge py-session-info xlogo
ngmlr py-setproctitle xlsatoms
ngspice py-setupmeta xlsclients
nicstat py-setuptools xlsfonts
nim py-setuptools-cpp xmag
ninja py-setuptools-git xman
ninja-fortran py-setuptools-rust xmessage
nix py-setuptools-scm xmh
njet py-setuptools-scm-git-archive xmlf90
nlcglib py-sfepy xmlrpc-c
nlohmann-json py-sgp4 xmlto
nlohmann-json-schema-validator py-sh xmodmap
nlopt py-shapely xmore
nmap py-shellingham xnnpack
nn-c py-shiboken xorg-cf-files
nnpack py-shiboken2 xorg-docs
nnvm py-shortbred xorg-gtest
node-js py-shortuuid xorg-server
notmuch py-shroud xorg-sgml-doctools
npb py-shtab xphelloworld
npm py-sierrapy xplor-nih
npth py-simpleeval xplsprinters
nrm py-simplegeneric xpmem
ns-3-dev py-simplejson xpr
nseg py-simplekml xprehashprinterlist
nsimd py-singledispatch xprop
nspr py-sip xproperty
nss py-six xproto
ntirpc py-skl2onnx xproxymanagementprotocol
ntl py-slepc4py xqilla
ntpoly py-slurm-pipeline xrandr
numactl py-smac xrdb
numamma py-smart-open xrdcl-record
numap py-smartypants xrefresh
numdiff py-smmap xrootd
nut py-snappy xrx
nvcomp py-sncosmo xsbench
nvdimmsim py-sniffio xscope
nvhpc py-snowballstemmer xsd
nvptx-tools py-snuggs xsdk
nvshmem py-sobol-seq xsdk-examples
nvtop py-sonlib xset
nwchem py-sortedcollections xsetmode
nyancat py-sortedcontainers xsetpointer
ocaml py-soundfile xsetroot
ocamlbuild py-soupsieve xsimd
occa py-spacy xsm
oce py-spacy-models-en-core-web-sm xstdcmap
oci-systemd-hook py-spacy-models-en-vectors-web-lg xtensor
ocl-icd py-sparse xtensor-blas
oclgrind py-spatialist xtensor-python
oclint py-spatialite xterm
oclock py-spdlog xtl
octa py-spectra xtrans
octave py-spectral xtrap
octave-arduino py-speech-recognition xts
octave-control py-spefile xvidtune
octave-gsl py-spgl1 xvinfo
octave-instrctl py-spglib xwd
octave-io py-spherical xwidgets
octave-optim py-sphinx xwininfo
octave-quaternion py-sphinx-argparse xwud
octave-signal py-sphinx-autodoc-typehints xxd-standalone
octave-splines py-sphinx-bootstrap-theme xxhash
octave-statistics py-sphinx-copybutton xyce
octave-struct py-sphinx-design xz
octave-symbolic py-sphinx-gallery yajl
octopus py-sphinx-multiversion yaksa
odc py-sphinx-rtd-theme yambo
of-catalyst py-sphinx-tabs yaml-cpp
of-precice py-sphinxautomodapi yara
ome-common-cpp py-sphinxcontrib-applehelp yarn
ome-files-cpp py-sphinxcontrib-bibtex yasm
ome-model py-sphinxcontrib-devhelp ycruncher
omega-h py-sphinxcontrib-htmlhelp ycsb
omnitrace py-sphinxcontrib-issuetracker yoda
ompss py-sphinxcontrib-jsmath yorick
ompt-openmp py-sphinxcontrib-mermaid z-checker
oneapi-igc py-sphinxcontrib-napoleon z3
oneapi-level-zero py-sphinxcontrib-programoutput zabbix
onednn py-sphinxcontrib-qthelp zfp
oniguruma py-sphinxcontrib-serializinghtml zfs
onnx py-sphinxcontrib-trio zig
ont-albacore py-sphinxcontrib-websupport zip
ont-guppy py-sphobjinv zipkin
oommf py-spyder zlib
op2-dsl py-spykeutils zlib-ng
opa-psm2 py-sqlalchemy zoltan
opam py-sqlalchemy-stubs zookeeper
opari2 py-sqlalchemy-utils zookeeper-benchmark
open-iscsi py-sqlparse zopfli
open-isns py-srsly zpares
open3d py-sshtunnel zsh
openal-soft py-stack-data zstd
openbabel py-statsmodels zstr
openblas py-stdlib-list zziplib
opencarp py-stestr None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

7zip

Homepage:
Spack package:
Versions:
21.07
Description:
7-Zip is a file archiver for Windows

abacus

Homepage:
Spack package:
Versions:
develop, 2.2.3, 2.2.2, 2.2.1, 2.2.0
Build Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Link Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Run Dependencies:
mpi
Description:
ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.6.1, 9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20220623.0, 20211102.0, 20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake, ninja
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, ninja, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Build Dependencies:
gnuconfig
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

acfl

Homepage:
Spack package:
Versions:
22.1, 22.0.2, 22.0.1
Build Dependencies:
ncurses
Link Dependencies:
ncurses
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 20.3.0, 20.2.0, 20.1.0, 20.0.0, 19.10.0, 19.9.0, 19.8.0, 19.7.0, 19.6.0, 19.5.0, 19.4.0, 19.3.0, 19.2.0, 19.1.0, 19.0.0, 18.0.0, 17.1.0, 17.0.0, 16.0.0, 15.1.0, 15.0.1, 15.0.0, 14.1.0, 14.0.0, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, ninja, acts-dd4hep, actsvg, autodiff, boost, dd4hep, edm4hep, eigen, geant4, gperftools, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnx-runtime, py-pybind11, py-pytest, root, sycl, vecmem
Link Dependencies:
cuda, acts-dd4hep, actsvg, autodiff, boost, dd4hep, edm4hep, eigen, geant4, gperftools, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnx-runtime, py-pybind11, py-pytest, root, sycl, vecmem
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

acts-dd4hep

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0
Build Dependencies:
cmake, ninja, dd4hep
Link Dependencies:
dd4hep
Description:
Glue library to connect Acts to DD4hep

actsvg

Homepage:
Spack package:
Versions:
0.4.26
Build Dependencies:
cmake, ninja, boost, googletest
Link Dependencies:
boost, googletest
Test Dependencies:
boost
Description:
An SVG based C++17 plotting library for ACTS detectors and surfaces.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, ninja, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.2, 0.2.1, 0.1.1
Build Dependencies:
cmake, ninja, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.8.3, 2.8.2, 2.8.1, 2.8.0, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cuda, cmake, ninja, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, libpressio, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
cuda, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, libpressio, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
gnuconfig, bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
gnuconfig, automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gnuconfig, gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Build Dependencies:
gnuconfig
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agile

Homepage:
Spack package:
Versions:
1.5.1
Build Dependencies:
gnuconfig, hepmc, boost
Link Dependencies:
hepmc, boost
Description:
AGILe is A Generator Interface Library (& executable), i.e. a uniform object oriented C++ interface for a variety of Fortran-based Monte Carlo event generators..

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, ninja, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, ninja, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, ninja, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
gnuconfig
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.7.2, 2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, ninja, boost
Link Dependencies:
cuda, cmake, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alpgen

Homepage:
Spack package:
Versions:
2.1.4
Build Dependencies:
cmake, ninja
Description:
A collection of codes for the generation of multi-parton processes in hadronic collisions.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, ninja, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, 1.0.10, 1.0.9, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0
Build Dependencies:
cmake, ninja, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Build Dependencies:
gnuconfig
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0-lbann, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, mpi, nccl, hwloc, cub, hipcub, rccl, aws-ofi-rccl, aws-ofi-nccl
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub, rccl, aws-ofi-rccl, aws-ofi-nccl
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, parallel-netcdf, tcsh, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, parallel-netcdf, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amd-aocl

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0, 2.2
Build Dependencies:
amdblis, amdfftw, amdlibflame, amdlibm, amdscalapack, aocl-sparse
Link Dependencies:
amdblis, amdfftw, amdlibflame, amdlibm, amdscalapack, aocl-sparse
Description:
AMD Optimizing CPU Libraries (AOCL) - AOCL is a set of numerical libraries tuned specifically for AMD EPYC processor family. They have a simple interface to take advantage of the latest hardware innovations. The tuned implementations of industry standard math libraries enable fast development of scientific and high performance computing projects

amdblis

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, blas, python
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0, 2.2
Build Dependencies:
cmake, ninja, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, ninja, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.2.0, 0.1.0
Build Dependencies:
gnuconfig, numactl, cuda, hip, oneapi-level-zero, hwloc, ocl-icd, m4, autoconf, automake, libtool, pkgconf, git
Link Dependencies:
numactl, cuda, hip, oneapi-level-zero, hwloc, ocl-icd
Description:
AML is a memory management library designed to ease the use of complex memory topologies and complex data layout optimizations for high- performance computing applications.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, ninja, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20220525, 20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

ampt

Homepage:
Spack package:
Versions:
2.26-t9b_atlas, 2.26-t9
Description:
A Multi-Phase Transport (AMPT) model is a Monte Carlo transport model for nuclear collisions at relativistic energies.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, hypre, masa, ascent, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, hypre, masa, ascent, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 22.11, 22.10, 22.09, 22.08, 22.07, 22.06, 22.05, 22.04, 22.03, 22.02, 22.01, 21.12, 21.11, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, mpi, sundials, python, hdf5, rocrand, rocprim, intel-oneapi-mkl
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc, intel-oneapi-mkl
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrfinder

Homepage:
Spack package:
Versions:
3.10.42, 3.10.30, 3.10.24
Build Dependencies:
blast-plus, hmmer, curl
Link Dependencies:
blast-plus, hmmer, curl
Description:
NCBI AMRFinderPlus: This software and the accompanying database identify acquired antimicrobial resistance genes in bacterial protein and/or assembled nucleotide sequences as well as known resistance-associated point mutations for several taxa. With AMRFinderPlus we added select members of additional classes of genes such as virulence factors, biocide, heat, acid, and metal resistance genes.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2022.05, 2021.11, 2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.14, 0.10
Build Dependencies:
gnuconfig, pkgconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.935, 0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

anicalculator

Homepage:
Spack package:
Versions:
1
Run Dependencies:
perl
Description:
This tool will calculate the bidirectional average nucleotide identity (gANI) and Alignment Fraction (AF) between two genomes. Note: A manual download is required for ANIcalculator. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, ninja, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
gnuconfig, python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
20220205, 2.4.0, 2.3.5, 2.2.0
Build Dependencies:
cmake, ninja
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

any2fasta

Homepage:
Spack package:
Versions:
0.4.2, 0.2.3, 0.1.2
Build Dependencies:
perl
Run Dependencies:
perl
Description:
any2fasta: Convert various sequence formats to FASTA

aocc

Homepage:
Spack package:
Versions:
3.2.0, 3.1.0, 3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : https://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0, 2.2
Build Dependencies:
cmake, ninja, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, ninja, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, ninja, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, gl, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
gl, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.4, 0.0.3, 0.0.2, 0.0.1
Build Dependencies:
cmake, mpi, llvm-openmp
Link Dependencies:
mpi, llvm-openmp
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
3.0.2, 2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, ninja, zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Link Dependencies:
zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
gnuconfig, swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apktool

Homepage:
Spack package:
Versions:
2.6.1, 2.6.0
Build Dependencies:
java
Run Dependencies:
java
Description:
A tool for reverse engineering 3rd party, closed, binary Android apps.

apple-gl

Homepage:
Spack package:
Versions:
4.1.0
Description:
Shim package for the core OpenGL library from Apple

apple-glu

Homepage:
    No homepage
Spack package:
Versions:
1.3.0
Description:
Shim package for Apple implementation of OpenGL Utility Libray (GLU)

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apptainer

Homepage:
Spack package:
Versions:
main, 1.0.2
Build Dependencies:
pkgconfig, go, uuid, libgpg-error, libseccomp, git, cryptsetup
Link Dependencies:
go, uuid, libgpg-error, libseccomp, git
Run Dependencies:
squashfs, shadow, cryptsetup
Description:
Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. Needs post-install chmod/chown steps to enable full functionality. See package definition or `spack-build- out.txt` build log for details, e.g.:: tail -15 $(spack location -i apptainer)/.spack/spack-build-out.txt

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Build Dependencies:
gnuconfig
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.7, 0.6, 0.5.2, 0.5
Build Dependencies:
cuda, cmake, ninja, fmt, nlohmann-json, random123, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, fmt, nlohmann-json, random123, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.3, 1.2, 1.1, 1.0, 0.9-beta
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, mpi, rocthrust, kokkos, trilinos
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, rocthrust, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

arc

Homepage:
Spack package:
Versions:
master, 2021-12-01
Build Dependencies:
cmake, ninja, libpressio
Link Dependencies:
libpressio
Description:
ARC is an automatic resiliency library designed to provide security to lossy compressed data or other uint8_t data arrays forked from: https://github.com/FTHPC/ARC to support Spack after developer left grad school

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, ninja, llvm, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Build Dependencies:
gnuconfig
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake, ninja
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Build Dependencies:
gnuconfig
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.36.0, 1.35.0, 1.34.0
Build Dependencies:
gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm-forge

Homepage:
Spack package:
Versions:
22.1.1, 22.1, 22.0.4, 22.0.3, 22.0.2, 22.0.1, 22.0, 21.1.3, 21.1.2, 21.1.1, 21.1, 21.0.3, 21.0.2, 21.0.1, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, ninja, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

armpl-gcc

Homepage:
Spack package:
Versions:
22.1_gcc-11.2, 22.1_gcc-10.2, 22.1_gcc-9.3, 22.1_gcc-8.2, 22.1_gcc-7.5, 22.0.2_gcc-11.2, 22.0.2_gcc-10.2, 22.0.2_gcc-9.3, 22.0.2_gcc-8.2, 22.0.2_gcc-7.5, 22.0.1_gcc-11.2, 22.0.1_gcc-10.2, 22.0.1_gcc-9.3, 22.0.1_gcc-8.2, 22.0.1_gcc-7.5
Description:
Arm Performance Libraries provides optimized standard core math libraries for high-performance computing applications on Arm processors.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
gnuconfig, cmake, ninja, blas, lapack, mpi, automake, autoconf, libtool, pkgconfig
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.8.1, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, ninja, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
9.0.0, 8.0.0, 7.0.0, 4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, ninja, boost, flatbuffers, llvm, lz4, openssl, orc, protobuf, py-numpy, python, rapidjson, re2, snappy, thrift, utf8proc, xsimd, zlib, zstd
Link Dependencies:
cuda, boost, flatbuffers, lz4, openssl, orc, protobuf, py-numpy, python, rapidjson, re2, snappy, thrift, utf8proc, xsimd, zlib, zstd
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, ninja, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, ninja, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python, autoconf, automake, libtool
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
Build Dependencies:
gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, ninja, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.21.0, 1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2, 1.18.1, 1.18.0, 1.17.0, 1.16.1, 1.16.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, ninja, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, ninja, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Build Dependencies:
gnuconfig
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.2.4, 5.2.3, 5.2.2, 5.2.1, 5.1.4, 5.1.3, 5.0.1, 4.0.1
Build Dependencies:
cmake, ninja, pkgconfig, zlib
Link Dependencies:
zlib
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.7.1, 5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
5.2.3, 5.2.1, 5.2.0, 5.1.3, 5.1.0, 5.0.2, 5.0.0, 4.5.2, 4.5.0, 4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, ninja, rsync
Link Dependencies:
rsync, comgr, hsa-rocr-dev, elf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.2.0.1, 4.2.0.0, 4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
gnuconfig, lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Build Dependencies:
gnuconfig
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, ninja, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59
Build Dependencies:
gnuconfig, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2022.02.11, 2019.01.06
Build Dependencies:
gnuconfig
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodiff

Homepage:
Spack package:
Versions:
0.6.4, 0.5.13
Build Dependencies:
cmake, ninja, eigen, py-pybind11
Link Dependencies:
eigen
Run Dependencies:
py-pybind11
Description:
autodiff is automatic differentiation made easier for C++.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
gnuconfig, pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, ninja, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.5, 1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
gnuconfig, autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-ofi-nccl

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, libfabric, cuda, nccl, mpi, autoconf, automake, libtool
Link Dependencies:
libfabric, cuda, nccl, mpi
Description:
AWS OFI NCCL is a plug-in which enables EC2 developers to use libfabric as a network provider while running NVIDIA's NCCL based applications.

aws-ofi-rccl

Homepage:
Spack package:
Versions:
master, cxi
Build Dependencies:
gnuconfig, libfabric, hip, rccl, mpi, autoconf, automake, libtool
Link Dependencies:
libfabric, hip, rccl, mpi
Description:
AWS OFI RCCL is a plug-in which enables EC2 developers to use libfabric as a network provider while running AMD's RCCL based applications.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.7, 2.11.6, 2.11.5, 2.11.4, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-pip, py-wheel, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

aws-sdk-cpp

Homepage:
Spack package:
Versions:
1.9.247
Build Dependencies:
cmake, ninja, zlib, curl
Link Dependencies:
zlib, curl
Description:
AWS SDK for C++. The AWS SDK for C++ provides a modern C++ (version C++ 11 or later) interface for Amazon Web Services (AWS). It is meant to be performant and fully functioning with low- and high-level SDKs, while minimizing dependencies and providing platform portability (Windows, OSX, Linux, and mobile).

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.17.10, 2.16.1
Build Dependencies:
gnuconfig, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.7.1, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, ninja, kvtree
Link Dependencies:
kvtree, zlib
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, blt, mpi, conduit, hdf5, lua, scr, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, conduit, hdf5, lua, scr, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.1.0, 1.0.1, 1.0.0
Build Dependencies:
cmake, ninja, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
gnuconfig, glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

bacio

Homepage:
Spack package:
Versions:
2.5.0, 2.4.1
Build Dependencies:
cmake, ninja
Description:
The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake, ninja
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.2, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake, ninja, jsoncpp
Link Dependencies:
zlib, jsoncpp
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.15, 1.0.13
Build Dependencies:
zlib, git
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gnuconfig, gmp, ntl, llvm, libyaml
Link Dependencies:
gmp, ntl, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.4, 4.3
Build Dependencies:
gnuconfig, ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
gnuconfig, automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.21.0, 0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batchedblas

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
blas
Link Dependencies:
blas
Description:
Batched BLAS is one of the new approaches for a task-based BLAS invocation, and it is defined as a new interface that allows users to execute multiple independent BLAS operations as a single subroutine call

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

baurmc

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig
Description:
Baur's Monte Carlo package for simulating W+ gamma production at hadron colliders provides full electroweak calculation upto O(alpha) and contains higher order QCD corrections as well.

bazel

Homepage:
Spack package:
Versions:
5.2.0, 5.1.1, 5.1.0, 5.0.0, 4.2.2, 4.2.1, 4.2.0, 4.1.0, 4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.0, 0.1.4, 0.1.1
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
gnuconfig, ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.14, 1.13, 1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gnuconfig, gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdsim

Homepage:
Spack package:
Versions:
develop, 1.6.0
Build Dependencies:
cmake, ninja, geant4, root, clhep, flex, bison
Link Dependencies:
cmake, geant4, root, clhep, flex, bison
Description:
Beam Delivery Simulation (BDSIM) is a C++ program that utilises the Geant4 toolkit to simulate both the transport of particles in an accelerator and their interaction with the accelerator material

bdw-gc

Homepage:
Spack package:
Versions:
8.2.2, 8.0.6, 8.0.0, 7.6.0, 7.4.4
Build Dependencies:
gnuconfig, libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.4, 5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
3.0.20, 3.0.19, 3.0.18, 3.0.0, 2.2.0, 2.0.4
Build Dependencies:
cmake, ninja, pkgconfig, fmt, grpc, nlohmann-json, spdlog, python
Link Dependencies:
pkgconfig, fmt, grpc, nlohmann-json, spdlog
Test Dependencies:
googletest
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
main, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, ninja
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Build Dependencies:
gnuconfig
Description:
Oracle Berkeley DB

berkeleygw

Homepage:
Spack package:
Versions:
3.0.1, 3.0, 2.1
Build Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py, fftw, amdfftw, openblas, amdblis
Link Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, fftw, amdfftw, openblas, amdblis
Run Dependencies:
python, py-numpy, py-setuptools, py-h5py
Test Dependencies:
perl
Description:
BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
gnuconfig, flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigdft-atlab

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3
Build Dependencies:
gnuconfig, mpi, openbabel, bigdft-futile
Link Dependencies:
mpi, openbabel, bigdft-futile
Description:
BigDFT-atlab: library for ATomic related operations.

bigdft-chess

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-CheSS: A module for performing Fermi Operator Expansions via Chebyshev Polynomials.

bigdft-core

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Link Dependencies:
cuda, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Run Dependencies:
python
Description:
BigDFT-core: the core components of BigDFT, an electronic structure calculation based on Daubechies wavelets.

bigdft-futile

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, libyaml, py-pyyaml, mpi
Link Dependencies:
cuda, blas, lapack, libyaml, py-pyyaml, mpi
Run Dependencies:
python
Description:
BigDFT-futile: a library handling most common FORTRAN low-level operations, like memory managment, profiling routines, I/O operations. It also supports yaml output and parsing for fortran programs. It also provides wrappers routines to MPI and linear algebra operations. This library is intensively used in BigDFT packages.

bigdft-libabinit

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, mpi, libxc, bigdft-futile
Link Dependencies:
mpi, libxc, bigdft-futile
Run Dependencies:
python
Description:
BigDFT-libABINIT: this is a subsection of files coming from ABINIT software package, to which BigDFT has been coupled since the early days. It handles different parts like symmetries, ewald corrections, PAW routines, density and potential mixing routines and some MD minimizers.

bigdft-psolver

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-Psolver: a flexible real-space Poisson Solver based on Interpolating Scaling Functions. It constitutes a fundamental building block of BigDFT code, and it can also be used separately and linked to other codes.

bigdft-spred

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Link Dependencies:
blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Run Dependencies:
python
Description:
BigDFT-spred: a library for structure prediction tools, that is compiled on top of BigDFT routines.

bigdft-suite

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Link Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Run Dependencies:
python
Description:
BigDFT-suite: the complete suite of BigDFT for electronic structure calculation based on Daubechies wavelets.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
gnuconfig, pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.38, 2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
gnuconfig, zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
gnuconfig, boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
gnuconfig, diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitgroomingz

Homepage:
Spack package:
Versions:
master, 2022-10-14
Build Dependencies:
cmake, ninja, zlib
Link Dependencies:
zlib
Description:
BGZ: Bit Grooming Compressor

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
gnuconfig, glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake, ninja
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blackhat

Homepage:
Spack package:
Versions:
0.9.9
Build Dependencies:
gnuconfig, qd, python
Link Dependencies:
qd, python
Run Dependencies:
python
Description:
Blackhat MC generator

blaspp

Homepage:
Spack package:
Versions:
master, 2022.07.00, 2022.05.00, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
gnuconfig, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
37, 35
Build Dependencies:
libpng, libuuid, mysql-client
Link Dependencies:
libpng, libuuid, mysql-client
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, ninja, blas, lapack, boost, hpx
Link Dependencies:
blas, lapack, boost, hpx
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
gnuconfig, python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake, ninja
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Build Dependencies:
gnuconfig
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.5.2, 0.5.1, 0.5.0, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20220330, 20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main, 2.8.1
Build Dependencies:
gnuconfig, autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, ninja, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, ninja, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, py-virtualenv, py-pip, py-wheel, zlib, libsigsegv
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib, libsigsegv
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, ninja, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Build Dependencies:
gnuconfig
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, ninja, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.80.0, 1.79.0, 1.78.0, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.19.1, 2.19.0, 2.18.2, 2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, ninja, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, ninja
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, ninja, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, ninja, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-popgen

Homepage:
Spack package:
Versions:
2.4.1
Build Dependencies:
cmake, ninja, bpp-seq
Link Dependencies:
bpp-seq
Description:
The Bio++ Population Genetics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, ninja, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, ninja, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, ninja, texinfo, bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
2.7
Run Dependencies:
python, kraken2
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, ninja, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, ninja, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bricks

Homepage:
Spack package:
Versions:
r0.1
Build Dependencies:
cmake, ninja, autoconf, automake, libtool, opencl-clhpp, cuda, mpi
Link Dependencies:
opencl-clhpp, cuda, mpi
Description:
Bricks is a data layout and code generation framework, enabling performance-portable stencil computations across a multitude of architectures.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost, ncurses
Link Dependencies:
boost, ncurses
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, ninja
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.9, 1.0.7
Build Dependencies:
cmake, ninja
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, ninja, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brunsli

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake, ninja
Description:
Brunsli is a lossless JPEG repacking library.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake, ninja
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.0, 0.4.1, 0.4.0, 0.3.3, 0.3.1
Build Dependencies:
gnuconfig, pkgconfig, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Build Dependencies:
gnuconfig
Description:
A Binary Decision Diagram library.

bueno

Homepage:
Spack package:
Versions:
master
Build Dependencies:
python, py-pip, py-wheel, py-pyyaml, py-lark, py-pika, py-setuptools
Run Dependencies:
python, py-pyyaml, py-lark, py-pika
Description:
Bueno: Well-Provenanced Benchmarking

bufr

Homepage:
Spack package:
Versions:
11.5.0
Build Dependencies:
cmake, ninja
Description:
The NOAA bufr library contains subroutines, functions and other utilities that can be used to read (decode) and write (encode) data in BUFR, which is a WMO standard format for the exchange of meteorological data. This is part of the NCEPLIBS project.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
5.4.3, 4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython, py-pandas, bbmap, prodigal, metaeuk, sepp
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 2.2.2, 2.2.1, 2.2.0, 2.1.1, 2.1.0, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, ninja, mpi, blas, lapack, scalapack, arpack-ng, sed
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig, libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
20210808
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
gnuconfig, tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake, ninja
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.1, 1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, ninja, snappy, zlib,