Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 5329 mainline packages:

3dtk nfft py-torchfile
3proxy nfs-ganesha py-torchsummary
abduco nfs-utils py-torchtext
abi-compliance-checker nghttp2 py-torchvision
abi-dumper nginx py-tornado
abinit ngmerge py-tox
abseil-cpp ngmlr py-tpot
abyss ngspice py-tqdm
accfft nicstat py-traceback2
acct nim py-traitlets
accumulo ninja py-traits
ace ninja-fortran py-traitsui
ack nix py-transformers
acl njet py-treehash
acpica-tools nlcglib py-tuiview
acpid nlohmann-json py-twine
activeharmony nlohmann-json-schema-validator py-twisted
activemq nlopt py-typed-ast
acts nmap py-typesentry
addrwatch nn-c py-typing
adept-utils nnvm py-typing-extensions
adf node-js py-tzlocal
adiak notmuch py-ucx-py
adios npb py-ujson
adios2 npm py-umalqurra
adlbx npth py-umi-tools
admixtools nrm py-uncertainties
adol-c ns-3-dev py-unicycler
advancecomp nseg py-unidecode
adwaita-icon-theme nsimd py-unittest2
aegean nspr py-unittest2py3k
aeskeyfind ntirpc py-unshare
aespipe ntpoly py-update-checker
agrep numactl py-uproot4
aida numamma py-uritemplate
akantu numap py-urllib3
alan numdiff py-urwid
albany nut py-us
albert nvdimmsim py-usgs
alglib nvhpc py-utils
allpaths-lg nvptx-tools py-uvloop
alluxio nvshmem py-uvw
alps nvtop py-uwsgi
alquimia nwchem py-vcf-kit
alsa-lib nyancat py-vcstool
aluminum ocaml py-vcstools
ambari ocamlbuild py-vcversioner
amber occa py-vermin
amdblis oce py-versioneer
amdfftw oci-systemd-hook py-vine
amdlibflame ocl-icd py-virtualenv
amdlibm oclgrind py-virtualenv-clone
amdscalapack oclint py-virtualenvwrapper
amg oclock py-visdom
amg2013 octave py-voluptuous
amgx octave-arduino py-vsc-base
aml octave-control py-vsc-install
amp octave-gsl py-vsts
ampliconnoise octave-instrctl py-vsts-cd-manager
amrex octave-io py-walinuxagent
amrvis octave-optim py-wand
anaconda2 octave-quaternion py-wandb
anaconda3 octave-signal py-warlock
andi octave-splines py-wasabi
angsd octave-statistics py-watchdog
ant octave-struct py-wcsaxes
antimony octave-symbolic py-wcwidth
antlr octopus py-weave
ants of-catalyst py-webencodings
aocc of-precice py-webkit-server
aoflagger omega-h py-weblogo
aom ompss py-websocket-client
aomp ompt-openmp py-websockets
apachetop onednn py-werkzeug
apcomp oniguruma py-whatshap
ape ont-albacore py-wheel
aperture-photometry opa-psm2 py-whichcraft
apex opam py-widgetsnbextension
apfel opari2 py-workload-automation
apple-libunwind open-iscsi py-wradlib
apple-libuuid open-isns py-wrapt
applewmproto openbabel py-wstool
appres openblas py-wub
apr opencascade py-wxmplot
apr-util opencl-c-headers py-wxpython
aragorn opencl-clhpp py-xarray
arbor opencl-headers py-xattr
arborx opencoarrays py-xdot
archer opencv py-xenv
argobots opendx py-xgboost
argon2 openexr py-xlrd
argp-standalone openfast py-xlsxwriter
argtable openfdtd py-xlwt
aria2 openfoam py-xmlrunner
arm openfoam-org py-xmltodict
arm-forge openfst py-xopen
armadillo opengl py-xpyb
arpack-ng openglu py-xvfbwrapper
arrayfire openimageio py-yahmm
arrow openipmi py-yajl
asagi openjdk py-yamlreader
ascent openjpeg py-yapf
asciidoc openkim-models py-yarl
asciidoc-py3 openldap py-yolk3k
asdcplib openloops py-youtube-dl
asdf-cxx openmc py-yt
aspa openmm py-ytopt
aspcud openmolcas py-zarr
aspect openmpi py-zc-buildout
aspell openmx py-zc-lockfile
aspell6-de opennurbs py-zict
aspell6-en openpa py-zipp
aspell6-es openpbs py-zope-event
aspera-cli openpmd-api py-zope-interface
assimp openrasmol py-zxcvbn
astra openresty pythia6
astral openscenegraph pythia8
astyle openslide python
at-spi2-atk openslp q-e-sirius
at-spi2-core openspeedshop qbank
atf openspeedshop-utils qbox
athena openssh qca
atk openssl qcachegrind
atlas openstf qd
atmi opensubdiv qemu
atom-dft opentsdb qgis
atompaw openvslam qgraf
atop openwsman qhull
attr opium qjson
audacious optional-lite qmcpack
audacity optipng qmd-progress
audit-userspace opus qnnpack
augustus orbit2 qorts
authd orc qperf
authselect orca qrupdate
autoconf orfm qscintilla
autoconf-archive orientdb qt
autodock-gpu orthofiller qt-creator
autodock-vina orthofinder qtgraph
autofact orthomcl qthreads
autogen osi qtkeychain
automaded osmctools quantum-espresso
automake osqp quartz
avizo ossp-uuid quicksilver
aws-parallelcluster osu-micro-benchmarks quinoa
awscli otf quota
axel otf2 qwt
axl p11-kit qwtpolar
axom p3dfft3 r
babelflow p4est r-a4
babeltrace p7zip r-a4base
backupninja pacbio-daligner r-a4classif
bam-readcount pacbio-damasker r-a4core
bamaddrg pacbio-dazz-db r-a4preproc
bamdst pacbio-dextractor r-a4reporting
bamtools packmol r-abadata
bamutil pacparser r-abaenrichment
bannergrab pacvim r-abind
barrnap pagit r-absseq
bart pagmo r-acde
bash pal r-acepack
bash-completion paml r-acgh
bashtop panda r-acme
bat pandaseq r-ada
batctl pandoc r-adabag
bats pango r-ade4
bazel pangolin r-adegenet
bbcp pangomm r-adegraphics
bbmap papi r-adephylo
bc papyrus r-adespatial
bcache paradiseo r-adgoftest
bcftools parallel r-adsplit
bcl2fastq2 parallel-netcdf r-aer
bdftopcf parallelio r-affxparser
bdii parallelmergetree r-affy
bdw-gc paraver r-affycomp
beagle paraview r-affycompatible
beakerlib parmetis r-affycontam
bear parmgridgen r-affycoretools
beast-tracer parquet-cpp r-affydata
beast1 parquet-format r-affyexpress
beast2 parsec r-affyilm
bedops parsimonator r-affyio
bedtools2 parsplice r-affypdnn
beforelight partitionfinder r-affyplm
benchmark pasta r-affyqcreport
berkeley-db patch r-affyrnadegradation
bertini patchelf r-agdex
bgpdump patchutils r-agilp
bib2xhtml pathfinder r-agimicrorna
bigreqsproto pax-utils r-aims
bind9 pbbam r-aldex2
binutils pbmpi r-allelicimbalance
bioawk pbsuite r-alpine
biobambam2 pciutils r-als
biobloom pcl r-alsace
biopieces pcma r-altcdfenvs
bird pcre r-amap
bismark pcre2 r-ampliqueso
bison pdf2svg r-analysispageserver
bitlbee pdftk r-anaquin
bitmap pdsh r-aneufinder
bitsery pdt r-aneufinderdata
blaspp pegtl r-animation
blasr pennant r-annaffy
blasr-libcpp percept r-annotate
blast-legacy percona-server r-annotationdbi
blast-plus perfstubs r-annotationfilter
blast2go perl r-annotationforge
blat perl-acme-damn r-annotationhub
blaze perl-algorithm-diff r-aod
blis perl-alien-build r-ape
bliss perl-alien-libxml2 r-argparse
blitz perl-alien-svn r-aroma-light
blktrace perl-app-cmd r-askpass
bloaty perl-array-utils r-assertthat
blogbench perl-b-hooks-endofscope r-backports
blt perl-bio-searchio-hmmer r-bamsignals
bmake perl-bioperl r-base64
bmi perl-bit-vector r-base64enc
bml perl-cairo r-bayesm
bohrium perl-capture-tiny r-bbmisc
boinc-client perl-carp-clan r-beachmat
bolt perl-cgi r-beanplot
bonniepp perl-class-data-inheritable r-beeswarm
bookleaf-cpp perl-class-inspector r-bfast
boost perl-class-load r-bfastspatial
boostmplcartesianproduct perl-class-load-xs r-bglr
botan perl-clone r-bh
bowtie perl-clone-choose r-biasedurn
bowtie2 perl-compress-raw-bzip2 r-bibtex
boxlib perl-compress-raw-zlib r-bigalgebra
bpp-core perl-config-general r-bigmemory
bpp-phyl perl-contextual-return r-bigmemory-sri
bpp-phyl-omics perl-cpan-meta-check r-bindr
bpp-seq perl-data-dumper r-bindrcpp
bpp-seq-omics perl-data-optlist r-bio3d
bpp-suite perl-data-stag r-biobase
bracken perl-date-manip r-biocfilecache
braker perl-db-file r-biocgenerics
branson perl-dbd-mysql r-biocinstaller
breakdancer perl-dbd-pg r-biocmanager
bref3 perl-dbd-sqlite r-biocneighbors
breseq perl-dbi r-biocparallel
bridger perl-devel-cycle r-biocsingular
brigand perl-devel-globaldestruction r-biocstyle
brltty perl-devel-overloadinfo r-biocversion
brotli perl-devel-stacktrace r-biom-utils
brpc perl-devel-symdump r-biomart
bsseeker2 perl-digest-md5 r-biomartr
bubblewrap perl-dist-checkconflicts r-biomformat
bucky perl-encode-locale r-biostrings
buddy perl-error r-biovizbase
bumpversion perl-eval-closure r-bit
busco perl-exception-class r-bit64
busybox perl-exporter-tiny r-bitops
butter perl-extutils-config r-blob
butterflypack perl-extutils-depends r-blockmodeling
bwa perl-extutils-helpers r-bmp
bwtool perl-extutils-installpaths r-bookdown
byacc perl-extutils-makemaker r-boot
byobu perl-extutils-pkgconfig r-boruta
byte-unixbench perl-ffi-checklib r-brew
byteman perl-file-chdir r-brio
bzip2 perl-file-copy-recursive r-broom
c perl-file-homedir r-bsgenome
c-ares perl-file-listing r-bsgenome-hsapiens-ucsc-hg19
c-blosc perl-file-pushd r-bsseq
c-blosc2 perl-file-sharedir-install r-bumphunter
c-lime perl-file-slurp r-c50
cabana perl-file-slurp-tiny r-cairo
cachefilesd perl-file-slurper r-callr
caffe perl-file-which r-car
cairo perl-font-ttf r-caracas
cairomm perl-forks r-cardata
caliper perl-gd r-caret
callflow perl-gdgraph r-caroline
callpath perl-gdgraph-histogram r-category
camellia perl-gdtextutil r-catools
camp perl-graph r-cdcfluview
camx perl-graph-readwrite r-cellranger
canal perl-hash-merge r-checkmate
candle-benchmarks perl-html-parser r-checkpoint
cantera perl-html-tagset r-chemometrics
canu perl-http-cookies r-chipseq
cap3 perl-http-daemon r-chron
capnproto perl-http-date r-circlize
capstone perl-http-message r-circstat
cardioid perl-http-negotiate r-class
care perl-inline r-classint
casacore perl-inline-c r-cli
cask perl-io-all r-clipr
casper perl-io-compress r-clisymbols
cassandra perl-io-html r-clue
catalyst perl-io-prompt r-cluster
catch2 perl-io-sessiondata r-clustergeneration
cbc perl-io-socket-ssl r-clusterprofiler
cbench perl-io-string r-cner
cbflib perl-io-stringy r-coda
cblas perl-io-tty r-codetools
cbtf perl-ipc-run r-codex
cbtf-argonavis perl-json r-coin
cbtf-argonavis-gui perl-libwww-perl r-colorspace
cbtf-krell perl-libxml-perl r-combinat
cbtf-lanl perl-list-moreutils r-commonmark
cc65 perl-list-moreutils-xs r-complexheatmap
ccache perl-log-log4perl r-compositions
ccfits perl-logger-simple r-condop
ccls perl-lwp-mediatypes r-conquer
ccs-qcd perl-lwp-protocol-https r-construct
cctools perl-mailtools r-convevol
cdbfasta perl-math-bezier r-copula
cdd perl-math-cdf r-corhmm
cddlib perl-math-cephes r-corpcor
cdecimal perl-math-matrixreal r-corrplot
cdhit perl-math-round r-countrycode
cdo perl-math-vecstat r-covr
ceed perl-module-build r-cowplot
cereal perl-module-build-tiny r-cpp11
ceres-solver perl-module-implementation r-crayon
cfitsio perl-module-runtime r-credentials
cgal perl-module-runtime-conflicts r-crosstalk
cgdb perl-moose r-crul
cgdcbxd perl-mozilla-ca r-ctc
cget perl-mro-compat r-cubature
cgl perl-namespace-clean r-cubist
cgm perl-net-http r-curl
cgns perl-net-scp-expect r-dada2
chai perl-net-ssleay r-data-table
changa perl-number-format r-dbi
channelflow perl-object-insideout r-dbplyr
chapel perl-package-deprecationmanager r-debugme
charliecloud perl-package-stash r-decipher
charmpp perl-package-stash-xs r-delayedarray
chatterbug perl-padwalker r-delayedmatrixstats
check perl-parallel-forkmanager r-deldir
chgcentre perl-params-util r-dendextend
chill perl-params-validate r-deoptim
chlorop perl-parse-recdescent r-deoptimr
chombo perl-path-tiny r-desc
chrony perl-pdf-api2 r-deseq
chrpath perl-pegex r-deseq2
cinch perl-perl-unsafe-signals r-desolve
circos perl-perl-version r-devtools
cistem perl-perl4-corelibs r-diagrammer
citcoms perl-perl6-slurp r-dicekriging
cityhash perl-perlio-gzip r-dichromat
ck perl-perlio-utf8-strict r-diffobj
clamav perl-readonly r-diffusionmap
clamr perl-regexp-common r-digest
clapack perl-scalar-list-utils r-diptest
clara perl-scalar-util-numeric r-dirichletmultinomial
claw perl-set-intervaltree r-dismo
cleaveland4 perl-set-intspan r-diversitree
cleverleaf perl-set-scalar r-dnacopy
clfft perl-soap-lite r-do-db
clhep perl-star-fusion r-domc
cli11 perl-statistics-basic r-doparallel
clinfo perl-statistics-descriptive r-dorng
clingo perl-statistics-pca r-dose
clingo-bootstrap perl-sub-exporter r-dosnow
cln perl-sub-exporter-progressive r-dotcall64
cloc perl-sub-identify r-downloader
cloog perl-sub-install r-dplyr
cloverleaf perl-sub-name r-dqrng
cloverleaf3d perl-sub-uplevel r-dss
clp perl-svg r-dt
clustal-omega perl-swissknife r-dtw
clustalw perl-sys-sigaction r-dygraphs
cmake perl-task-weaken r-dynamictreecut
cmaq perl-term-readline-gnu r-e1071
cmark perl-termreadkey r-earth
cminpack perl-test-cleannamespaces r-ecp
cmocka perl-test-deep r-edger
cmockery perl-test-differences r-ellipse
cmor perl-test-exception r-ellipsis
cnmem perl-test-fatal r-emmli
cnpy perl-test-memory-cycle r-energy
cntk perl-test-most r-enrichplot
cntk1bitsgd perl-test-needs r-ensembldb
cnvnator perl-test-requires r-envstats
codar-cheetah perl-test-requiresinternet r-ergm
code-server perl-test-warn r-europepmc
codec2 perl-test-warnings r-evaluate
codes perl-text-csv r-evd
coevp perl-text-diff r-exactextractr
cohmm perl-text-format r-exomecopy
coin3d perl-text-simpletable r-exomedepth
coinhsl perl-text-soundex r-expint
coinutils perl-text-unidecode r-expm
collectd perl-time-hires r-factoextra
collier perl-time-piece r-factominer
colm perl-timedate r-fansi
colordiff perl-try-tiny r-farver
comd perl-uri r-fastcluster
comgr perl-want r-fastdigest
commons-lang perl-www-robotrules r-fastmap
commons-lang3 perl-xml-dom r-fastmatch
commons-logging perl-xml-dom-xpath r-fastmatrix
compiz perl-xml-filter-buffertext r-fdb-infiniummethylation-hg18
compositeproto perl-xml-libxml r-fdb-infiniummethylation-hg19
conda4aarch64 perl-xml-libxslt r-ff
conduit perl-xml-namespacesupport r-fftwtools
connect-proxy perl-xml-parser r-fgsea
conserver perl-xml-parser-lite r-fields
console-bridge perl-xml-quote r-filehash
constype perl-xml-regexp r-findpython
consul perl-xml-sax r-fit-models
converge perl-xml-sax-base r-fitdistrplus
corenlp perl-xml-sax-writer r-flashclust
coreutils perl-xml-simple r-flexclust
corset perl-xml-twig r-flexmix
cosbench perl-xml-writer r-fnn
cosma perl-xml-xpathengine r-forcats
cosmoflow-benchmark perl-yaml r-foreach
cosmomc perl-yaml-libyaml r-forecast
cosp2 pestpp r-foreign
cotter petsc r-formatr
couchdb pexsi r-formula
cowsay pfapack r-fpc
cp2k pfft r-fpcompare
cpio pflask r-fracdiff
cpmd pflotran r-fs
cpp-httplib pfunit r-futile-logger
cppad pgdspider r-futile-options
cppcheck pgi r-future
cppgsl phantompeakqualtools r-future-apply
cpprestsdk phast r-gamlss
cppunit phasta r-gamlss-data
cppzmq phist r-gamlss-dist
cpu-features phoenix r-gbm
cpuinfo photos r-gbrd
cqrlib php r-gcrma
cquery phrap-crossmatch-swat r-gdalutils
cracklib phred r-gdata
cradl phylip r-gdsfmt
cram phylobayesmpi r-geiger
cray-fftw phyluce r-genefilter
cray-libsci picard r-genelendatabase
cray-mpich picsar r-genemeta
cromwell picsarlite r-geneplotter
cromwell-womtool pidx r-generics
cronie pig r-genetics
cryptopp pigz r-genie3
cryptsetup pilon r-genomeinfodb
csa-c pindel r-genomeinfodbdata
cscope pinentry r-genomicalignments
csdp pinfo r-genomicfeatures
ctffind pipework r-genomicranges
ctpl piranha r-gensa
ctre pism r-geomorph
cub pixman r-geonames
cube pixz r-geoquery
cubelib pkg-config r-geor
cubew pkgconf r-geosphere
cubist pktools r-gert
cuda planck-likelihood r-getopt
cuda-memtest plasma r-getoptlong
cudnn platypus r-ggally
cufflinks plink r-ggbeeswarm
cunit plink-ng r-ggbio
cups plplot r-ggdendro
curl plumed r-ggforce
cusz ply r-ggjoy
cvector pmdk r-ggmap
cvs pmerge r-ggplot2
cxx pmgr-collective r-ggplotify
cxxopts pmix r-ggpubr
cxxtest pmlib r-ggraph
cyrus-sasl pnfft r-ggrepel
czmq pngquant r-ggridges
dakota pngwriter r-ggsci
daligner pnmpi r-ggsignif
dalton poamsa r-ggvis
damageproto pocl r-gh
damaris podio r-gistr
damselfly polymake r-git2r
darshan-runtime poplddecay r-gitcreds
darshan-util poppler r-glimma
dash poppler-data r-glmnet
datamash popt r-globaloptions
dataspaces porta r-globals
datatransferkit portage r-glue
date portcullis r-gmodels
dateutils postgis r-gmp
davix postgresql r-go-db
dbcsr povray r-goftest
dbow2 powerapi r-gofuncr
dbus powertop r-googlevis
dbus-glib ppl r-goplot
dbxtool pplacer r-gosemsim
dcap ppopen-appl-amr-fdm r-goseq
dcmtk ppopen-appl-bem r-gostats
dd4hep ppopen-appl-bem-at r-gower
ddd ppopen-appl-dem-util r-gplots
dealii ppopen-appl-fdm r-graph
dealii-parameter-gui ppopen-appl-fdm-at r-graphlayouts
debbuild ppopen-appl-fem r-grbase
decentralized-internet ppopen-appl-fvm r-gridbase
deconseq-standalone ppopen-at r-gridextra
dejagnu ppopen-math-mp r-gridgraphics
delly2 ppopen-math-vis r-gsa
delphes prank r-gsalib
delta precice r-gseabase
denovogear predixy r-gsl
dftbplus premake-core r-gsodr
dftd3-lib presentproto r-gss
dftfe preseq r-gstat
dhpmm-f presto r-gsubfn
dhtest price r-gtable
dia primer3 r-gtools
dialign prinseq-lite r-gtrellis
dialign-tx printproto r-gviz
diamond prism r-gwmodel
diffmark prmon r-haven
diffsplice prng r-hdf5array
diffutils probconsrna r-hdf5r
dihydrogen procenv r-hexbin
dimemas process-in-process r-hh
ding-libs procps r-highr
dire procps-ng r-hmisc
direnv prodigal r-hms
discovar profugusmc r-hoardr
discovardenovo proj r-htmltable
disktype prokka r-htmltools
dislin prometheus r-htmlwidgets
distcc protobuf r-httpcode
diy protobuf-c r-httpuv
dlib proxymngr r-httr
dlpack prrte r-hwriter
dmd pruners-ninja r-hypergraph
dmidecode ps-lite r-ica
dmlc-core psi4 r-igraph
dmtcp pslib r-illuminahumanmethylation450kanno-ilmn12-hg19
dmxproto psm r-illuminaio
dnsmap psmc r-imager
dnsmasq pstreams r-impute
dnstop pugixml r-influencer
dnstracer pulseaudio r-ini
docbook-xml pumi r-inline
docbook-xsl pv r-interactivedisplaybase
dock pvm r-intervals
dos2unix pxz r-inum
dosfstools py-3to2 r-ipred
dotconf py-4suite-xml r-iranges
dotnet-core-sdk py-abipy r-irdisplay
double-conversion py-absl-py r-irkernel
doxygen py-accimage r-irlba
dpdk py-acme-tiny r-isdparser
draco py-adal r-iso
dracut py-adb-enhanced r-isoband
dramsim2 py-addict r-iterators
dray py-adios r-janitor
dri2proto py-advancedhtmlparser r-jaspar2018
dri3proto py-aenum r-jomo
drill py-affine r-jpeg
dropwatch py-agate r-jsonlite
druid py-agate-dbf r-kegg-db
ds py-agate-excel r-kegggraph
dsdp py-agate-sql r-keggrest
dsqss py-aiofiles r-kernlab
dsrc py-aiohttp r-kernsmooth
dssp py-aiohttp-cors r-kknn
dtcmp py-aioredis r-knitr
duperemove py-alabaster r-ks
dyninst py-alembic r-labeling
dysco py-altgraph r-lambda-r
e2fsprogs py-amqp r-laplacesdemon
ea-utils py-angel r-lars
eagle py-ansible r-later
earlyoom py-antlr4-python3-runtime r-lattice
easybuild py-anuga r-latticeextra
ebms py-apache-beam r-lava
eccodes py-apache-libcloud r-lazyeval
ecdsautils py-apex r-ldheatmap
ecflow py-apipkg r-leaflet
eclipse-gcj-parser py-appdirs r-leaflet-providers
ecos py-applicationinsights r-leaps
ecp-data-vis-sdk py-appnope r-learnbayes
ecp-proxy-apps py-apptools r-leiden
ed py-apscheduler r-lfe
editline py-archspec r-lhs
editres py-argcomplete r-libcoin
edm4hep py-argon2-cffi r-lifecycle
eem py-argparse r-limma
efivar py-args r-limsolve
eigen py-arrow r-listenv
eigenexa py-arviz r-lme4
elasticsearch py-asciitree r-lmtest
elemental py-asdf r-locfit
elfutils py-ase r-log4r
elk py-asgiref r-loo
elmerfem py-asn1crypto r-lpsolve
elpa py-aspy-yaml r-lsei
elsd py-asserts r-lubridate
elsdc py-asteval r-lumi
elsi py-astor r-magic
emacs py-astpretty r-magick
ember py-astroid r-magrittr
emboss py-astropy r-makecdfenv
embree py-astropy-healpix r-maldiquant
enca py-astropy-helpers r-manipulatewidget
enchant py-astunparse r-mapplots
energyplus py-async-generator r-mapproj
entrezdirect py-async-timeout r-maps
entt py-asyncio r-maptools
environment-modules py-atomicwrites r-markdown
enzo py-atpublic r-mass
eospac py-atropos r-mathjaxr
eq-r py-attrs r-matlab
er py-audioread r-matr
erfa py-autograd r-matrix
erlang py-autograd-gamma r-matrixgenerics
ermod py-autopep8 r-matrixmodels
erne py-auxlib r-matrixstats
es-shell py-avro r-mclust
esmf py-avro-json-serializer r-mcmcglmm
espanso py-avro-python3 r-mco
essl py-awesome-slugify r-mda
etcd py-awkward1 r-memoise
ethminer py-azote r-mergemaid
ethtool py-azure-batch r-metap
etsf-io py-azure-cli r-methylumi
evemu py-azure-cli-command-modules-nspkg r-mgcv
everytrace py-azure-cli-core r-mgraster
everytrace-example py-azure-cli-nspkg r-mice
evieext py-azure-cli-telemetry r-mime
evtgen py-azure-common r-minfi
exa py-azure-core r-miniui
exabayes py-azure-cosmos r-minqa
examinimd py-azure-datalake-store r-misc3d
examl py-azure-functions-devops-build r-mitml
exampm py-azure-graphrbac r-mitools
exasp2 py-azure-identity r-mixtools
exciting py-azure-keyvault r-mlbench
exiv2 py-azure-keyvault-certificates r-mlinterfaces
exmcutils py-azure-keyvault-keys r-mlr
exodusii py-azure-keyvault-nspkg r-mlrmbo
exonerate py-azure-keyvault-secrets r-mmwrweek
exonerate-gff3 py-azure-loganalytics r-mnormt
expat py-azure-mgmt-advisor r-modelmetrics
expect py-azure-mgmt-apimanagement r-modelr
express py-azure-mgmt-appconfiguration r-modeltools
extrae py-azure-mgmt-applicationinsights r-mpm
exuberant-ctags py-azure-mgmt-authorization r-msnbase
eztrace py-azure-mgmt-batch r-multcomp
f2c py-azure-mgmt-batchai r-multicool
f77-zmq py-azure-mgmt-billing r-multitaper
f90cache py-azure-mgmt-botservice r-multtest
fabtests py-azure-mgmt-cdn r-munsell
fairlogger py-azure-mgmt-cognitiveservices r-mutoss
faiss py-azure-mgmt-compute r-mvtnorm
fakechroot py-azure-mgmt-consumption r-mzid
fakexrandr py-azure-mgmt-containerinstance r-mzr
falcon py-azure-mgmt-containerregistry r-nada
fann py-azure-mgmt-containerservice r-nanotime
faodel py-azure-mgmt-core r-ncbit
fast-global-file-status py-azure-mgmt-cosmosdb r-ncdf4
fasta py-azure-mgmt-datalake-analytics r-network
fastdb py-azure-mgmt-datalake-store r-networkd3
fastdfs py-azure-mgmt-datamigration r-nimble
fastjar py-azure-mgmt-deploymentmanager r-nleqslv
fastjet py-azure-mgmt-devtestlabs r-nlme
fastjson py-azure-mgmt-dns r-nloptr
fastmath py-azure-mgmt-eventgrid r-nmf
fastme py-azure-mgmt-eventhub r-nmof
fastp py-azure-mgmt-hdinsight r-nnet
fastphase py-azure-mgmt-imagebuilder r-nnls
fastq-screen py-azure-mgmt-iotcentral r-nor1mix
fastqc py-azure-mgmt-iothub r-nortest
fastqvalidator py-azure-mgmt-iothubprovisioningservices r-np
fasttext py-azure-mgmt-keyvault r-npsurv
fasttransforms py-azure-mgmt-kusto r-numderiv
fasttree py-azure-mgmt-loganalytics r-oligoclasses
fastx-toolkit py-azure-mgmt-managedservices r-openssl
faust py-azure-mgmt-managementgroups r-openxlsx
fca py-azure-mgmt-maps r-optparse
fcgi py-azure-mgmt-marketplaceordering r-ordinal
fd-find py-azure-mgmt-media r-org-hs-eg-db
fdupes py-azure-mgmt-monitor r-organismdbi
feh py-azure-mgmt-msi r-packrat
fenics py-azure-mgmt-netapp r-pacman
fenics-dolfinx py-azure-mgmt-network r-paleotree
feq-parse py-azure-mgmt-nspkg r-pamr
fermi py-azure-mgmt-policyinsights r-pan
fermikit py-azure-mgmt-privatedns r-parallelly
fermisciencetools py-azure-mgmt-rdbms r-parallelmap
ferret py-azure-mgmt-recoveryservices r-paramhelpers
ffb py-azure-mgmt-recoveryservicesbackup r-party
ffmpeg py-azure-mgmt-redhatopenshift r-partykit
ffr py-azure-mgmt-redis r-patchwork
ffsb py-azure-mgmt-relay r-pathview
fftw py-azure-mgmt-reservations r-pbapply
fgsl py-azure-mgmt-resource r-pbdzmq
figlet py-azure-mgmt-search r-pbkrtest
figtree py-azure-mgmt-security r-pcamethods
file py-azure-mgmt-servicebus r-pcapp
filebench py-azure-mgmt-servicefabric r-pegas
filo py-azure-mgmt-signalr r-permute
filtlong py-azure-mgmt-sql r-pfam-db
fimpute py-azure-mgmt-sqlvirtualmachine r-phangorn
find-circ py-azure-mgmt-storage r-phantompeakqualtools
findbugs py-azure-mgmt-trafficmanager r-philentropy
findutils py-azure-mgmt-web r-phylobase
fio py-azure-multiapi-storage r-phyloseq
fipscheck py-azure-nspkg r-phylostratr
fish py-azure-storage-common r-phytools
fixesproto py-azure-storage-nspkg r-picante
fj py-azureml-automl-core r-pillar
fjcontrib py-azureml-core r-pixmap
fl py-azureml-dataprep r-pkgbuild
flac py-azureml-dataprep-native r-pkgconfig
flann py-azureml-dataprep-rslex r-pkgload
flash py-azureml-dataset-runtime r-pkgmaker
flatbuffers py-azureml-pipeline r-plogr
flatcc py-azureml-pipeline-core r-plot3d
flcl py-azureml-pipeline-steps r-plotly
flecsale py-azureml-sdk r-plotmo
flecsi py-azureml-telemetry r-plotrix
flecsph py-azureml-train r-pls
flex py-azureml-train-automl-client r-plyr
flexi py-azureml-train-core r-pmcmr
flexiblas py-azureml-train-restclients-hyperdrive r-png
flibcpp py-babel r-polspline
flink py-backcall r-polyclip
flint py-backports-abc r-polynom
flit py-backports-functools-lru-cache r-popgenome
fltk py-backports-lzma r-popvar
flume py-backports-shutil-get-terminal-size r-powerlaw
flux-core py-backports-ssl-match-hostname r-prabclus
flux-sched py-backports-tempfile r-pracma
fluxbox py-backports-weakref r-praise
fmt py-basemap r-preprocesscore
foam-extend py-bash-kernel r-prettyunits
folly py-basis-set-exchange r-proc
font-util py-bayesian-optimization r-processx
fontcacheproto py-bcbio-gff r-prodlim
fontconfig py-bcolz r-progress
fontsproto py-bcrypt r-proj
fonttosfnt py-beancount r-proj4
form py-beautifulsoup4 r-promises
fortran py-bigfloat r-protgenerics
fortrilinos py-billiard r-proto
foundationdb py-binaryornot r-proxy
fox py-bintrees r-pryr
fp16 py-binwalk r-ps
fpc py-biom-format r-pscbs
fping py-biomine r-pspline
fplll py-biopandas r-psych
fpocket py-biopython r-ptw
fqtrim py-bitarray r-purrr
fr-hit py-bitstring r-qtl
fraggenescan py-black r-quadprog
freebayes py-bleach r-quantmod
freeglut py-blessed r-quantreg
freeimage py-blessings r-quantro
freeipmi py-blinker r-quickplot
freetype py-blis r-qvalue
freexl py-blosc r-r-cache
fribidi py-bmap-tools r-r-methodss3
frontier-client py-bokeh r-r-oo
frontistr py-boltons r-r-utils
fseq py-boom-boot-manager r-r6
fsl py-boto r-randomfields
fslsfonts py-boto3 r-randomfieldsutils
fstobdf py-botocore r-randomforest
fstrack py-bottle r-randomglm
ftgl py-bottleneck r-ranger
ftk py-breakseq2 r-rann
fujitsu-fftw py-breathe r-rapiserialize
fujitsu-mpi py-brian r-rappdirs
fujitsu-ssl2 py-brian2 r-raster
funhpc py-brotlipy r-rbgl
fuse-overlayfs py-bsddb3 r-rbibutils
fyba py-bx-python r-rbokeh
fzf py-bz2file r-rcmdcheck
g2o py-cached-property r-rcolorbrewer
g4abla py-cachetools r-rcpp
g4emlow py-cairocffi r-rcppannoy
g4ensdfstate py-cantoolz r-rcpparmadillo
g4incl py-cartopy r-rcppblaze
g4ndl py-catalogue r-rcppcctz
g4neutronxs py-catkin-pkg r-rcppcnpy
g4particlexs py-cclib r-rcppdate
g4photonevaporation py-cdat-lite r-rcppeigen
g4pii py-cdo r-rcpphnsw
g4radioactivedecay py-cdsapi r-rcppparallel
g4realsurface py-cekit r-rcppprogress
g4saiddata py-celery r-rcurl
g4tendl py-certifi r-rda
gamess-ri-mp2-miniapp py-certipy r-rdpack
gams py-cf-units r-readbitmap
ganglia py-cffi r-readr
gapbs py-cfgv r-readxl
gapcloser py-cftime r-recipes
gapfiller py-chai r-registry
gasnet py-chainer r-rematch
gate py-chainmap r-rematch2
gatepet2stir py-chalice r-remotes
gatk py-chardet r-reordercluster
gaudi py-charm4py r-reportingtools
gaussian py-checkm-genome r-repr
gaussian-src py-cheetah r-reprex
gaussian-view py-cheetah3 r-reproducible
gawk py-cheroot r-require
gblocks py-cherrypy r-reshape
gcc py-chronyk r-reshape2
gccmakedep py-cinema-lib r-reticulate
gccxml py-cinemasci r-rex
gchp py-click r-rferns
gconf py-click-didyoumean r-rgdal
gcta py-click-plugins r-rgenoud
gdal py-click-repl r-rgeos
gdb py-cligj r-rgexf
gdbm py-clint r-rgl
gdk-pixbuf py-clipboard r-rgooglemaps
gdl py-cloudpickle r-rgraphviz
gdrcopy py-clustershell r-rhdf5
geant4 py-cmake r-rhdf5filters
geant4-data py-cmake-format r-rhdf5lib
geant4-vmc py-cmocean r-rhmmer
gearshifft py-cnvkit r-rhtslib
gemmlowp py-coapthon3 r-rinside
genemark-et py-codecov r-rio
genesis py-cogent r-rjags
genfit py-coilmq r-rjava
gengetopt py-colorama r-rjson
genomefinisher py-colored-traceback r-rjsonio
genometools py-coloredlogs r-rlang
genomeworks py-colorful r-rle
genrich py-colorlog r-rmariadb
geode py-colormath r-rmarkdown
geoip py-colorpy r-rminer
geoip-api-c py-colorspacious r-rmpfr
geopm py-commonmark r-rmpi
geos py-configargparse r-rms
gettext py-configobj r-rmutil
gflags py-configparser r-rmysql
ghost py-contextily r-rnaseqmap
ghostscript py-contextlib2 r-rncl
ghostscript-fonts py-contextvars r-rnexml
giflib py-convertdate r-rngtools
ginac py-cookiecutter r-rnoaa
ginkgo py-counter r-robust
giraph py-cov-core r-robustbase
git py-coverage r-roc
git-fat-git py-cppheaderparser r-rocr
git-imerge py-crcmod r-rodbc
git-lfs py-crispresso r-rook
gitconddb py-crossmap r-rots
gl2ps py-cryptography r-roxygen2
glew py-cssselect r-rpart
glfmultiples py-csvkit r-rpart-plot
glfw py-cudf r-rpostgresql
glib py-cuml r-rprojroot
glib-networking py-cupy r-rrblup
glibmm py-current r-rrcov
glimmer py-cutadapt r-rrpp
glm py-cvxopt r-rsamtools
global py-cvxpy r-rsnns
globalarrays py-cycler r-rsolnp
glog py-cymem r-rspectra
gloo py-cyordereddict r-rsqlite
glpk py-cython r-rstan
glproto py-cyvcf2 r-rstantools
glusterfs py-d2to1 r-rstatix
glvis py-dadi r-rstudioapi
gmake py-dask r-rsvd
gmap-gsnap py-dask-glm r-rtracklayer
gmime py-dask-ml r-rtsne
gmodel py-dask-sphinx-theme r-runit
gmp py-dask-xgboost r-rvcheck
gmsh py-dataclasses r-rversions
gmt py-dateparser r-rvest
gmtsar py-dbf r-rzmq
gnat py-dbfread r-s4vectors
gnome-common py-deap r-samr
gnupg py-decorator r-sandwich
gnuplot py-deeptools r-scales
gnuradio py-deeptoolsintervals r-scater
gnutls py-defusedxml r-scattermore
go py-dendropy r-scatterpie
go-bootstrap py-deprecated r-scatterplot3d
go-md2man py-deprecation r-scrime
gobject-introspection py-descartes r-sctransform
goblin-hmc-sim py-devlib r-scuttle
googletest py-dgl r-sdmtools
gosam-contrib py-dictdiffer r-segmented
gotcha py-dill r-selectr
gource py-discover r-seqinr
gpdb py-diskcache r-seqlogo
gperf py-distributed r-servr
gperftools py-distro r-sessioninfo
gpgme py-django r-seurat
gpi-2 py-dlcpar r-sf
gplates py-dnaio r-sfsmisc
gprolog py-docker r-shadowtext
gpu-burn py-dockerpy-creds r-shape
gqrx py-docopt r-shiny
gr-osmosdr py-docutils r-shinydashboard
grabix py-docutils-stubs r-shinyfiles
grackle py-dominate r-shortread
gradle py-dotnetcore2 r-siggenes
grads py-doxypy r-simpleaffy
grafana py-doxypypy r-singlecellexperiment
grandr py-dp-gp-cluster r-sitmo
graph500 py-dpath r-sm
graphblast py-drmaa r-smoof
graphicsmagick py-dryscrape r-sn
graphite2 py-dulwich r-snakecase
graphlib py-dvc r-snow
graphmap py-dxchange r-snowfall
graphviz py-dxfile r-snprelate
grass py-earthengine-api r-snpstats
graylog2-server py-easybuild-easyblocks r-som
grep py-easybuild-easyconfigs r-somaticsignatures
grib-api py-easybuild-framework r-sourcetools
gridlab-d py-ecdsa r-sp
grnboost py-ecos r-spacetime
groff py-edffile r-spam
gromacs py-editdistance r-sparsem
grpc py-eg r-sparsematrixstats
gsettings-desktop-schemas py-elasticsearch r-spatial
gsl py-elephant r-spatialeco
gslib py-emcee r-spatialpack
gtk-doc py-empy r-spatialreg
gtkmm py-entrypoints r-spatstat
gtkorvo-atl py-enum34 r-spatstat-data
gtkorvo-cercs-env py-envisage r-spatstat-utils
gtkorvo-dill py-ephem r-spdata
gtkorvo-enet py-epydoc r-spdep
gtkplus py-espresso r-speedglm
gtksourceview py-espressopp r-spem
gts py-et-xmlfile r-splancs
guacamole-client py-eventlet r-splitstackshape
guacamole-server py-execnet r-sqldf
guidance py-exodus-bundler r-squarem
guile py-extension-helpers r-squash
gunrock py-extras r-sseq
gurobi py-ez-setup r-stabledist
gzip py-f90wrap r-stanheaders
h2database py-fabric r-stargazer
h5cpp py-falcon r-statmod
h5hut py-fallocate r-statnet-common
h5part py-fastaindex r-stringfish
h5utils py-fastavro r-stringi
h5z-zfp py-fastcache r-stringr
hacckernels py-fastcluster r-strucchange
hackrf-host py-fastdtw r-subplex
hadoop py-fasteners r-summarizedexperiment
hal py-fastrlock r-suppdists
halc py-faststructure r-survey
half py-fava r-survival
hama py-fenics-basix r-sva
hapcut2 py-fenics-dijitso r-sys
hapdip py-fenics-dolfinx r-tarifx
haploview py-fenics-ffc r-taxizedb
haproxy py-fenics-ffcx r-tclust
hardlink py-fenics-fiat r-teachingdemos
harfbuzz py-fenics-instant r-tensor
harminv py-fenics-ufl r-tensora
hashcat py-filelock r-testit
hazelcast py-filemagic r-testthat
hbase py-filterpy r-tfbstools
hbm-dramsim2 py-fiona r-tfisher
hc py-fiscalyear r-tfmpvalue
hcol py-fisher r-th-data
hcoll py-fits-tools r-threejs
hdf py-fixtures r-tibble
hdf-eos2 py-flake8 r-tidycensus
hdf-eos5 py-flake8-import-order r-tidygraph
hdf5 py-flake8-polyfill r-tidyr
hdf5-blosc py-flask r-tidyselect
hdfview py-flask-babel r-tidyverse
healpix-cxx py-flask-compress r-tiff
heaptrack py-flask-cors r-tigris
heffte py-flask-socketio r-timedate
helics py-flatten-dict r-tinytex
help2man py-flexx r-tmixclust
henson py-flufl-lock r-tmvnsim
hepmc py-flye r-topgo
hepmc3 py-fn-py r-triebeard
hepmcanalysis py-fortran-language-server r-trimcluster
heppdt py-fortranformat r-truncdist
heputils py-fparser r-truncnorm
hercules py-fprettify r-trust
herwig3 py-freezegun r-tseries
herwigpp py-fsspec r-tsne
hevea py-ftfy r-ttr
hibench py-funcsigs r-tweenr
hic-pro py-functools32 r-txdb-hsapiens-ucsc-hg18-knowngene
hicolor-icon-theme py-funcy r-txdb-hsapiens-ucsc-hg19-knowngene
highfive py-fusepy r-tximport
highwayhash py-future r-tximportdata
hiop py-futures r-ucminf
hip py-fypp r-udunits2
hip-rocclr py-gast r-units
hipblas py-gcovr r-upsetr
hipcub py-gdbgui r-urca
hipfort py-gdc-client r-urltools
hipify-clang py-gee-asset-manager r-usethis
hipsparse py-geeadd r-utf8
hipsycl py-geeup r-uuid
hiredis py-gemini r-uwot
hisat2 py-genders r-v8
hisea py-geneimpacts r-variantannotation
hive py-genshi r-varselrf
hmmer py-gensim r-vcd
homer py-geoalchemy2 r-vctrs
hoomd-blue py-geographiclib r-vegan
hotspot py-geopandas r-vfs
hpcc py-geoplot r-vgam
hpccg py-geopy r-vioplot
hpcg py-gevent r-vipor
hpctoolkit py-gf256 r-viridis
hpcviewer py-git-review r-viridislite
hpgmg py-gitdb r-visnetwork
hping py-gitpython r-vsn
hpl py-gluoncv r-waldo
hpx py-gnuplot r-watermelon
hpx5 py-goatools r-webshot
hsa-rocr-dev py-google r-wgcna
hsakmt py-google-api-core r-whisker
hsakmt-roct py-google-api-python-client r-withr
hsf-cmaketools py-google-auth r-xde
hssp py-google-auth-httplib2 r-xfun
hstr py-google-auth-oauthlib r-xgboost
htop py-google-cloud-core r-xlconnect
htslib py-google-cloud-storage r-xlconnectjars
http-get py-google-pasta r-xlsx
http-load py-google-resumable-media r-xlsxjars
http-parser py-googleapis-common-protos r-xmapbridge
http-ping py-googledrivedownloader r-xml
http-post py-gosam r-xml2
httpd py-gpaw r-xnomial
httperf py-gpustat r-xopen
httpie py-gputil r-xtable
httping py-gpy r-xts
httpress py-gpytorch r-xvector
hub py-gql r-yaimpute
hudi py-grandalf r-yaml
hugo py-graphql-core r-yapsa
hunspell py-graphviz r-yaqcaffy
hwloc py-greenlet r-yarn
hybpiper py-grequests r-zcompositions
hybrid-lambda py-griddataformats r-zeallot
hybridsim py-grpcio r-zip
hydra py-gsd r-zlibbioc
hydrogen py-gsi r-zoo
hyperscan py-guidata r3d
hyphy py-guiqwt rabbitmq
hypre py-h11 racon
i3 py-h2 raft
ibm-databroker py-h5glance ragel
ibm-java py-h5py raja
ibmisc py-h5sh ramulator
icarus py-hacking randfold
iceauth py-hatchet random123
icedtea py-hdbscan randrproto
icet py-hdfs range-v3
ico py-healpy rankstr
icu4c py-heapdict rapidjson
id3lib py-hepdata-validator raptor2
idba py-hepunits rasdaemon
idl py-hieroglyph rasqal
iegenlib py-hiredis ravel
ignite py-holland-backup raxml
igraph py-horovod raxml-ng
igv py-hpack ray
igvtools py-hpcbench rccl
ilmbase py-hpccm rclone
imagemagick py-hstspreload rdc
imake py-html2text rdma-core
imlib2 py-html5lib rdp-classifier
imp py-htmlgen rdptools
impute2 py-htseq re2
infernal py-httpbin re2c
influxdb py-httpcore readfq
iniparser py-httplib2 readline
inputproto py-httptools recon
intel py-httpx recorder
intel-daal py-humanfriendly recordproto
intel-gpu-tools py-humanize redis
intel-ipp py-hvac reditools
intel-llvm py-hyperframe redland
intel-mkl py-hyperopt redland-bindings
intel-mpi py-hypothesis redset
intel-mpi-benchmarks py-ics redundans
intel-oneapi-ccl py-identify reframe
intel-oneapi-compilers py-idna regcm
intel-oneapi-dal py-idna-ssl relax
intel-oneapi-dnn py-illumina-utils relion
intel-oneapi-ipp py-imageio remhos
intel-oneapi-ippcp py-imageio-ffmpeg rempi
intel-oneapi-mkl py-imagesize rename
intel-oneapi-mpi py-iminuit rendercheck
intel-oneapi-tbb py-immutables renderproto
intel-oneapi-vpl py-importlib repeatmasker
intel-parallel-studio py-importlib-metadata repeatmodeler
intel-pin py-importlib-resources repeatscout
intel-tbb py-inference-schema resourceproto
intel-xed py-inheritance revbayes
interproscan py-iniconfig revocap-coupler
intltool py-iniparse revocap-refiner
ioapi py-intel-openmp rgb
ior py-intervaltree rhash
iozone py-invoke rinetd
ipcalc py-ipaddress ripgrep
iperf2 py-ipdb rivet
iperf3 py-ipykernel rlwrap
ipopt py-ipyparallel rmats
iproute2 py-ipython rmlab
iq-tree py-ipython-cluster-helper rna-seqc
isaac py-ipython-genutils rnaz
isaac-server py-ipywidgets rng-tools
isc-dhcp py-irpf90 rngstreams
isescan py-isodate rocalution
isl py-isort rocblas
iso-codes py-itsdangerous rocfft
ispc py-jaraco-functools rocketmq
istio py-javaproperties rocksdb
itensor py-jdatetime rockstar
itk py-jdcal rocm-bandwidth-test
itstool py-jedi rocm-clang-ocl
itsx py-jeepney rocm-cmake
iwyu py-jellyfish rocm-dbgapi
jackcess py-jinja2 rocm-debug-agent
jafka py-jinja2-time rocm-device-libs
jags py-jmespath rocm-gdb
jali py-joblib rocm-opencl
jansi py-jplephem rocm-openmp-extras
jansi-native py-jprops rocm-smi
jansson py-jpype1 rocm-smi-lib
jasper py-jsmin rocm-tensile
jbigkit py-json-get rocm-validation-suite
jblob py-json5 rocminfo
jchronoss py-jsondiff rocprim
jdk py-jsonpatch rocprofiler-dev
jellyfish py-jsonpath-ng rocrand
jemalloc py-jsonpickle rocsolver
jetty-project py-jsonpointer rocsparse
jhpcn-df py-jsonref rocthrust
jimtcl py-jsonschema roctracer-dev
jline3 py-junit-xml rodinia
jmol py-jupyter root
jose py-jupyter-client rose
jpegoptim py-jupyter-console ross
jq py-jupyter-core routino
json-c py-jupyterhub rpcsvc-proto
json-cwx py-jupyterlab rr
json-fortran py-jupyterlab-pygments rrdtool
json-glib py-jupyterlab-server rsbench
jsoncpp py-keras rsem
jstorm py-keras-applications rstart
jube py-keras-preprocessing rsync
judy py-kerberos rsyslog
julea py-kitchen rt-tests
julia py-kiwisolver rtags
junit4 py-kmodes rtax
k8 py-knack ruby
kafka py-kombu ruby-asciidoctor
kahip py-labours ruby-erubis
kaiju py-lark-parser ruby-gnuplot
kaks-calculator py-latexcodec ruby-hpricot
kaldi py-lazy ruby-mustache
kallisto py-lazy-object-proxy ruby-narray
karma py-lazy-property ruby-rake
kassiopeia py-lazyarray ruby-rdiscount
kbd py-leather ruby-ronn
kbproto py-libconf ruby-rubyinline
kcov py-libensemble ruby-svn2git
kdiff3 py-librosa ruby-terminal-table
kea py-lifelines ruby-thor
kealib py-lightgbm ruby-tmuxinator
keepalived py-ligo-segments ruby-unicode-display-width
kentutils py-line-profiler ruby-xdg
keyutils py-linecache2 ruby-zentest
kibana py-lit rust
kicad py-llvmlite rust-bindgen
kim-api py-lmfit sabre
kinesis py-lmodule saga-gis
kitty py-localcider sailfish
kmergenie py-locket salmon
kmod py-lockfile salmon-tddft
knem py-logilab-common sambamba
kokkos py-louie samblaster
kokkos-kernels py-lru-dict samrai
kokkos-kernels-legacy py-lscsoft-glue samtools
kokkos-legacy py-luigi sandbox
kokkos-nvcc-wrapper py-lxml satsuma2
kraken py-lz4 savanna
kraken2 py-lzstring saws
krb5 py-m2r sblim-sfcc
krims py-macholib sbml
kripke py-machotools sbt
kubernetes py-macs2 scala
kvasir-mpl py-maestrowf scalasca
kvtree py-magic scallop
kylin py-mailchecker scalpel
ladot py-mako scan-for-matches
laghos py-mapclassify scantailor
lame py-markdown scipoptsuite
lammps py-markdown2 scons
lapackpp py-markovify scorec-core
last py-markupsafe scorep
lastz py-matplotlib scotch
laszip py-mayavi scr
latte py-mccabe screen
launchmon py-mdanalysis scripts
lazyten py-mechanize scrnsaverproto
lbann py-memory-profiler scs
lbxproxy py-memprof sctk
lbzip2 py-mercantile sdl2
lcals py-merlin sdl2-image
lcio py-metasv sdsl-lite
lcms py-methylcode seacas
lcov py-mg-rast-tools sed
ldak py-mido sensei
ldc py-mikado sentencepiece
ldc-bootstrap py-minrpc sentieon-genomics
legion py-misopy seqan
lemon py-mistune seqkit
leptonica py-mixedhtseq seqprep
less py-mlperf-logging seqtk
lesstif py-mlxtend serf
leveldb py-mmcv sessreg
lftp py-mmtf-python setserial
lhapdf py-mo-pack setxkbmap
lhapdf5 py-mock sfcgal
libaec py-modred sga
libaio py-moltemplate sgpp
libapplewm py-monotonic shadow
libarchive py-monty shapeit
libassuan py-more-itertools shapeit4
libatasmart py-moviepy shapelib
libatomic-ops py-mpi4py shared-mime-info
libbacktrace py-mpld3 shark
libbeagle py-mpmath shc
libbeato py-msal shengbte
libbinio py-msal-extensions shiny-server
libblastrampoline py-msgpack shiro
libbsd py-msgpack-numpy shocklibs
libbson py-msrest shoremap
libbytesize py-msrestazure shortbred
libc py-multi-key-dict shortstack
libcanberra py-multidict showfont
libcap py-multipledispatch shtools
libcap-ng py-multiprocess shuffile
libceed py-multiqc sickle
libcerf py-munch siesta
libcgroup py-murmurhash signalp
libcint py-mx signify
libcircle py-myhdl silo
libconfig py-mypy simde
libconfuse py-mypy-extensions simgrid
libcroco py-mysql-connector-python simmetrix-simmodsuite
libctl py-mysqlclient simplemoc
libcudf py-mysqldb1 simul
libcuml py-nanotime simulationio
libcumlprims py-natsort singularity
libcyaml py-nbclient singularity-legacy
libdaemon py-nbconvert sio
libdap4 py-nbformat sionlib
libdatrie py-nbsphinx sirius
libdivsufsort py-nc-time-axis skilion-onedrive
libdmx py-ndg-httpsclient skopeo
libdrm py-neo sl
libdwarf py-neobolt slang
libeatmydata py-neotime slate
libecpint py-nest-asyncio sleef
libedit py-nestle slepc
libelf py-netcdf4 slf4j
libemos py-netifaces slider
libepoxy py-netket sloccount
libestr py-networkit slurm
libev py-networkx smalt
libevdev py-nltk smartdenovo
libevent py-nodeenv smartmontools
libevpath py-nose smof
libexif py-nose-cov smproxy
libfabric py-nose2 snakemake
libfastcommon py-nosexcover snap
libfastjson py-notebook snap-berkeley
libffi py-numba snap-korf
libffs py-numcodecs snappy
libfive py-numexpr snbone
libflame py-numexpr3 sniffles
libfontenc py-numpy snpeff
libfs py-numpydoc snphylo
libfuse py-nvidia-ml-py snptest
libfyaml py-nvidia-ml-py3 soapdenovo-trans
libgcrypt py-oauth2client soapdenovo2
libgd py-oauthlib soci
libgeotiff py-olefile sofa-c
libgff py-onnx sollve
libgit2 py-ont-fast5-api sollya
libgpg-error py-opencensus solr
libgpuarray py-opencensus-context somatic-sniper
libgridxc py-openmc sonlib
libgssglue py-openpmd-validator sortmerna
libgtextutils py-openpyxl sosflow
libharu py-openslide-python source-highlight
libhbaapi py-opentuner sowing
libhio py-opppy sox
libhugetlbfs py-opt-einsum spades
libiberty py-or-tools span-lite
libibumad py-ordereddict spark
libical py-oset sparse
libice py-osqp sparsehash
libiconv py-overpy sparta
libid3tag py-owslib spath
libidl py-packaging spdlog
libidn2 py-palettable specfem3d-globe
libimagequant py-pamela spectrum-mpi
libimobiledevice py-pandas speex
libint py-pandocfilters speexdsp
libisal py-parameterized spfft
libiscsi py-paramiko spglib
libjpeg py-paramz sph2pipe
libjpeg-turbo py-parse spherepack
libjson py-parsedatetime spindle
libjwt py-parso spiral
libkcapi py-partd spla
libkml py-particle spm
libksba py-path-py spot
liblas py-pathlib sprng
liblbxutil py-pathlib2 sqlcipher
liblockfile py-pathos sqlite
libluv py-pathspec sqlite-jdbc
libmad py-patsy sqlitebrowser
libmatheval py-pauvre sqoop
libmaus2 py-pbr squashfs
libmaxminddb py-pem squid
libmesh py-pep8 sratoolkit
libmetalink py-pep8-naming sse2neon
libmicrohttpd py-performance sshpass
libmmtf-cpp py-periodictable ssht
libmng py-petastorm ssmtp
libmnl py-petsc4py sspace-longread
libmo-unpack py-pexpect sspace-standard
libmodbus py-phonenumbers sst-core
libmonitor py-phonopy sst-dumpi
libnbc py-pickleshare sst-elements
libnet py-picrust sst-macro
libnetfilter-conntrack py-picrust2 sst-transports
libnetworkit py-pid stacks
libnfnetlink py-pil staden-io-lib
libnftnl py-pillow star
libnl py-pillow-simd star-ccm-plus
libnotify py-pint startup-notification
libnova py-pip stat
libnrm py-pipits stata
libnsl py-pispino static-analysis-suite
libogg py-pkgconfig stc
liboldx py-pkginfo steps
libopts py-plac stinger
libp11 py-planar storm
libpam py-planet stow
libpaper py-plotly strace
libpcap py-pluggy stream
libpciaccess py-ply strelka
libpeas py-pmw stress
libpfm4 py-pomegranate string-view-lite
libpipeline py-portalocker stringtie
libplist py-portend structure
libpmemobj-cpp py-poster strumpack
libpng py-pox su2
libproxy py-poyo sublime-text
libpsl py-ppft subread
libpthread-stubs py-pre-commit subversion
libpulsar py-preshed suite-sparse
libqglviewer py-prettytable sumaclust
libqrencode py-profilehooks sumo
libquo py-proglog sundials
librdkafka py-progress superchic
librelp py-progressbar2 superlu
librmm py-projectq superlu-dist
librom py-prometheus-client superlu-mt
librsb py-prompt-toolkit supernova
librsvg py-protobuf sw4lite
librtlsdr py-psutil swap-assembler
libsamplerate py-psyclone swarm
libseccomp py-psycopg2 swfft
libsecret py-ptyprocess swftools
libsharp py-pudb swiftsim
libshm py-pure-eval swig
libsigcpp py-pure-sasl swipl
libsigsegv py-py symengine
libsm py-py-cpuinfo symlinks
libsndfile py-py-spy sympol
libsodium py-py2bit sysbench
libspatialindex py-py2cairo syscalc
libspatialite py-py2neo sysfsutils
libspiro py-py4j sysget
libsplash py-py6s sysstat
libssh py-pyamg systemtap
libssh2 py-pyani sz
libsvm py-pyarrow tabix
libszip py-pyasn1 tajo
libtar py-pyasn1-modules talass
libtasn1 py-pybedtools talloc
libtermkey py-pybigwig tangram
libthai py-pybind11 tantan
libtheora py-pybtex tar
libtiff py-pybtex-docutils targetp
libtirpc py-pycairo task
libtlx py-pycares taskd
libtomlc99 py-pycbc taskflow
libtommath py-pychecker tasmanian
libtool py-pycifrw tassel
libtree py-pycmd tau
libuecc py-pycodestyle tauola
libunistring py-pycosat tbl2asn
libunwind py-pycparser tcl
libusb py-pycrypto tcl-itcl
libusbmuxd py-pycuda tcl-tcllib
libuser py-pycurl tcl-tclxml
libuuid py-pydatalog tclap
libuv py-pydeps tcoffee
libvdwxc py-pydispatcher tcpdump
libverto py-pydmd tcptrace
libvips py-pydot tcsh
libvorbis py-pydot2 tdengine
libvori py-pydotplus tealeaf
libvterm py-pydv teckit
libwebp py-pyeda tecplot
libwebsockets py-pyelftools tempestremap
libwindowswm py-pyepsg templight
libx11 py-pyface templight-tools
libxau py-pyfaidx tengine
libxaw py-pyfasta tensorflow-serving-client
libxaw3d py-pyfftw termcap
libxc py-pyfiglet tesseract
libxcb py-pyfits testdfsio
libxcomposite py-pyflakes tetgen
libxcrypt py-pygdal tethex
libxcursor py-pygdbmi texinfo
libxdamage py-pygelf texlive
libxdmcp py-pygeos texstudio
libxevie py-pygit2 textparser
libxext py-pyglet tfel
libxfixes py-pygments the-platinum-searcher
libxfont py-pygments-pytest the-silver-searcher
libxfont2 py-pygobject thepeg
libxfontcache py-pygps thornado-mini
libxft py-pygpu thrift
libxi py-pygresql thrust
libxinerama py-pygtk tig
libxkbcommon py-pygtrie time
libxkbfile py-pyheadtail timedatex
libxkbui py-pyinstrument timemory
libxml2 py-pyinstrument-cext tinker
libxmu py-pyjnius tinyxml
libxp py-pyjwt tinyxml2
libxpm py-pyke tioga
libxpresent py-pykml tippecanoe
libxprintapputil py-pykwalify tiptop
libxprintutil py-pyliblzma tix
libxrandr py-pylikwid tixi
libxrender py-pylint tk
libxres py-pylops tldd
libxscrnsaver py-pymatgen tmalign
libxshmfence py-pymc3 tmhmm
libxslt py-pymeeus tmux
libxsmm py-pyminifier tomcat
libxstream py-pymol tophat
libxt py-pymongo totalview
libxtrap py-pymorph tpm2-tss
libxtst py-pympler tppred
libxv py-pymysql tracer
libxvmc py-pynacl transabyss
libxxf86dga py-pynio transdecoder
libxxf86misc py-pynn transposome
libxxf86vm py-pynvml transrate
libyaml py-pyodbc transset
libyogrt py-pyomo trapproto
libzip py-pyopencl tree
libzmq py-pyopenssl treelite
liggghts py-pypar treesub
lighttpd py-pyparsing trf
ligra py-pypeflow triangle
likwid py-pypeg2 trident
linkphase3 py-pyperclip trilinos
linktest py-pyperf trilinos-catalyst-ioss-adapter
linsys-v py-pyprecice trimal
linux-headers py-pyprof2html trimgalore
linux-pam py-pyproj trimmomatic
lis py-pyqi trinity
listres py-pyqt4 trinotate
lizard py-pyqt5 trnascan-se
lksctp-tools py-pyquaternion tskit
llvm py-pyrad tulip
llvm-amdgpu py-pyrosar turbine
llvm-doe py-pyrsistent turbomole
llvm-openmp py-pysam turnserver
llvm-openmp-ompt py-pyscaf tut
lm-sensors py-pyscf twm
lmbench py-pyserial tycho2
lmdb py-pyshp typhon
lmod py-pyside typhonio
lndir py-pyside2 uchardet
log4c py-pysmartdl ucx
log4cplus py-pysocks udunits
log4cpp py-pysolar ufo-core
log4cxx py-pyspark ufo-filters
logrotate py-pysqlite umap
logstash py-pytailf umesimd
loki py-pytest umoci
looptools py-pytest-arraydiff umpire
lordec py-pytest-benchmark unblur
lrslib py-pytest-cache uncrustify
lrzip py-pytest-check-links unibilium
lsf py-pytest-cov unifdef
lshw py-pytest-cpp unifyfs
lsof py-pytest-doctestplus unigen
lsscsi py-pytest-flake8 unison
ltp py-pytest-flakes units
ltr-retriever py-pytest-forked unittest-cpp
ltrace py-pytest-httpbin universal-ctags
lua py-pytest-isort unixodbc
lua-bitlib py-pytest-mock unqlite
lua-lpeg py-pytest-mypy unrar
lua-luafilesystem py-pytest-openfiles unuran
lua-luajit py-pytest-pep8 unzip
lua-luaposix py-pytest-runner upcxx
lua-mpack py-pytest-timeout uqtk
lucene py-pytest-xdist uriparser
luit py-python-benedict usbutils
lulesh py-python-daemon usearch
lumpy-sv py-python-dateutil userspace-rcu
lustre py-python-docs-theme utf8proc
lvarray py-python-editor util-linux
lvm2 py-python-engineio util-linux-uuid
lwgrp py-python-fmask util-macros
lwm2 py-python-fsutil uvw
lxc py-python-gitlab valgrind
lynx py-python-igraph vampirtrace
lz4 py-python-jenkins vardictjava
lzma py-python-json-logger variorum
lzo py-python-ldap varnish-cache
lzop py-python-levenshtein varscan
m4 py-python-logstash vasp
macsio py-python-lzo vbfnlo
mad-numdiff py-python-magic vc
madgraph5amc py-python-mapnik vcftools
mafft py-python-meep vcsh
magics py-python-memcached vdt
magma py-python-oauth2 veccore
mahout py-python-rapidjson vecgeom
makedepend py-python-slugify veclibfort
maker py-python-socketio vegas2
mallocmc py-python-subunit veloc
maloc py-python-swiftclient velvet
man-db py-python-utils velvetoptimiser
manta py-pythonqwt verilator
mapnik py-pythonsollya verrou
mapserver py-pytimeparse vesta
mapsplice2 py-pytools vgm
maq py-pytorch-gradual-warmup-lr videoproto
margo py-pytz viennarna
mariadb py-pyudev viewres
mariadb-c-client py-pyugrid vifi
mark py-pyutilib vigra
masa py-pyvcf vim
masurca py-pywavelets virtualgl
mathematica py-pywcs visit
matio py-pyyaml vizglow
matlab py-pyzmq vmatch
maven py-qsymm vmc
maverick py-qtawesome vmd
mawk py-qtconsole volk
mbdyn py-qtpy voropp
mbedtls py-quantities votca-csg
mc py-quast votca-csg-tutorials
mcl py-queryablelist votca-csgapps
mcpp py-questionary votca-ctp
mcutils py-radical-utils votca-tools
mdtest py-ranger-fm votca-xtp
med py-rasterio vpfft
meep py-ratelim vpic
mefit py-raven vsearch
megadock py-ray vsftpd
megahit py-rbtools vt
memaxes py-rdflib vtable-dumper
memcached py-readme-renderer vtk
meme py-recommonmark vtk-h
memkind py-redis vtk-m
memsurfer py-regex vvtest
memtester py-reportlab wannier90
meraculous py-repoze-lru warpx
mercurial py-reproject watch
mercury py-requests wayland
mesa py-requests-futures wcs
mesa-demos py-requests-mock wcslib
mesa-glu py-requests-oauthlib webbench
mesa18 py-requests-toolbelt weechat
meshkit py-resampy weighttp
meson py-restview wget
mesquite py-resultsfile wgsim
metabat py-retrying which
metall py-rfc3986 whizard
metaphysicl py-rich windowswmproto
metis py-rios wireshark
mfem py-rise wonton
mg py-rmm wordnet
mgis py-rnacocktail workrave
microbiomeutil py-robotframework wps
migraphx py-rope wrf
migrate py-rosdep wrk
mii py-rosdistro wsmancli
minced py-rosinstall wt
mindthegap py-rosinstall-generator wtdbg2
miniaero py-rospkg wxpropgrid
miniamr py-rpy2 wxwidgets
miniasm py-rq x11perf
miniconda2 py-rsa xabclib
miniconda3 py-rseqc xapian-core
minife py-rtree xauth
miniforge3 py-ruamel-ordereddict xbacklight
minigan py-ruamel-yaml xbiff
minighost py-ruamel-yaml-clib xbitmaps
minigmg py-s3cmd xbraid
minimap2 py-s3transfer xcalc
minimd py-sacremoses xcb-demo
minio py-saga-python xcb-proto
miniqmc py-sanic xcb-util
minisign py-scandir xcb-util-cursor
minismac2d py-scientificpython xcb-util-errors
minitri py-scikit-build xcb-util-image
minivite py-scikit-fmm xcb-util-keysyms
minixyce py-scikit-image xcb-util-renderutil
minizip py-scikit-learn xcb-util-wm
minuit py-scikit-optimize xcb-util-xrm
miopen-hip py-scipy xcfun
miopen-opencl py-scoop xclip
miopengemm py-scp xclipboard
mira py-scs xclock
miranda py-seaborn xcmiscproto
mirdeep2 py-secretstorage xcmsdb
mitofates py-selenium xcompmgr
mitos py-semantic-version xconsole
mivisionx py-semver xcursor-themes
mixcr py-send2trash xcursorgen
mkfontdir py-sentencepiece xdbedizzy
mkfontscale py-sentry-sdk xdelta
mlhka py-seriate xditview
mlocate py-setproctitle xdm
mlperf-deepcam py-setuptools xdmf3
mmg py-setuptools-git xdotool
moab py-setuptools-rust xdpyinfo
mochi-margo py-setuptools-scm xdriinfo
modern-wheel py-setuptools-scm-git-archive xedit
modylas py-sfepy xerces-c
mofem-cephas py-sgp4 xeus
mofem-fracture-module py-sh xev
mofem-minimal-surface-equation py-shapely xextproto
mofem-users-modules py-shiboken xeyes
mokutil py-shortuuid xf86bigfontproto
molcas py-shroud xf86dga
molden py-shtab xf86dgaproto
mongo-c-driver py-simplegeneric xf86driproto
mongo-cxx-driver py-simplejson xf86miscproto
mongodb-async-driver py-simplekml xf86rushproto
mono py-singledispatch xf86vidmodeproto
montage py-sip xfd
moosefs py-six xfindproxy
moreutils py-slepc4py xfontsel
mosh py-slurm-pipeline xforms
mothur py-smart-open xfs
motif py-smmap xfsdump
motioncor2 py-snappy xfsinfo
mount-point-attributes py-sncosmo xfsprogs
mozjs py-sniffio xfwp
mpark-variant py-snowballstemmer xgamma
mpas-model py-snuggs xgboost
mpc py-sonlib xgc
mpdecimal py-sortedcollections xhmm
mpe2 py-sortedcontainers xhost
mpest py-soundfile xineramaproto
mpfi py-soupsieve xinit
mpfr py-spacy xinput
mpi-bash py-spacy-models-en-core-web-sm xios
mpich py-spacy-models-en-vectors-web-lg xkbcomp
mpifileutils py-sparse xkbdata
mpilander py-spatialist xkbevd
mpileaks py-spatialite xkbprint
mpip py-spdlog xkbutils
mpir py-spectra xkeyboard-config
mpix-launch-swift py-spefile xkill
mpt py-spgl1 xlc
mptensor py-spglib xlf
mrbayes py-sphinx xload
mrbench py-sphinx-bootstrap-theme xlogo
mrchem py-sphinx-copybutton xlsatoms
mrcpp py-sphinx-gallery xlsclients
mrnet py-sphinx-rtd-theme xlsfonts
mrtrix3 py-sphinxautomodapi xmag
mscgen py-sphinxcontrib-applehelp xman
msgpack-c py-sphinxcontrib-bibtex xmessage
mshadow py-sphinxcontrib-devhelp xmh
msmc py-sphinxcontrib-htmlhelp xmlf90
msmc2 py-sphinxcontrib-issuetracker xmlrpc-c
mstk py-sphinxcontrib-jsmath xmlto
mt-metis py-sphinxcontrib-mermaid xmodmap
multitail py-sphinxcontrib-programoutput xmore
multitime py-sphinxcontrib-qthelp xorg-cf-files
multiverso py-sphinxcontrib-serializinghtml xorg-docs
mumax py-sphinxcontrib-trio xorg-gtest
mummer py-sphinxcontrib-websupport xorg-server
mummer4 py-spyder xorg-sgml-doctools
mumps py-spykeutils xphelloworld
munge py-sqlalchemy xplor-nih
muparser py-sqlalchemy-utils xplsprinters
muscle py-sqlparse xpmem
muse py-srsly xpr
musl py-sshtunnel xprehashprinterlist
muster py-statsmodels xprop
mutationpp py-stdlib-list xproto
mvapich2 py-stestr xproxymanagementprotocol
mvapich2-gdr py-stevedore xqilla
mvapich2x py-stopit xrandr
mxm py-storm xrdb
mxml py-stratify xrefresh
mxnet py-stsci-distutils xrootd
mysql py-subprocess32 xrx
n2p2 py-subrosa xsbench
nacos py-svgpathtools xscope
nag py-svgwrite xsd
nalu py-symengine xsdk
nalu-wind py-symfit xsdk-examples
namd py-sympy xsdktrilinos
nano py-syned xset
nanoflann py-systemd-python xsetmode
nanomsg py-tables xsetpointer
nanopb py-tabulate xsetroot
nasm py-tap-py xsimd
nauty py-tatsu xsm
nbdkit py-tblib xstdcmap
ncbi-magicblast py-tempora xtensor
ncbi-rmblastn py-tensorboard xtensor-python
ncbi-toolkit py-tensorboard-plugin-wit xterm
nccl py-tensorboardx xtl
nccl-tests py-tensorflow xtrans
nccmp py-tensorflow-estimator xtrap
ncdu py-termcolor xts
ncftp py-terminado xvidtune
ncl py-testfixtures xvinfo
nco py-testinfra xwd
ncompress py-testpath xwininfo
ncurses py-testrepository xwud
ncview py-testresources xxhash
ndiff py-testscenarios xz
neartree py-testtools yajl
nek5000 py-tetoolkit yambo
nekbone py-text-unidecode yaml-cpp
nekcem py-textblob yara
nektar py-texttable yarn
nektools py-tfdlpack yasm
neo4j py-theano ycsb
neovim py-thinc yoda
nest py-thirdorder yorick
netcdf-c py-threadpoolctl z-checker
netcdf-cxx py-tifffile z3
netcdf-cxx4 py-tinyarray zabbix
netcdf-fortran py-tokenizers zfp
netdata py-toml zfs
netgauge py-tomlkit zip
netgen py-tomopy zipkin
netkit-ftp py-toolz zlib
netlib-lapack py-torch zoltan
netlib-scalapack py-torch-cluster zookeeper
netlib-xblas py-torch-geometric zookeeper-benchmark
netperf py-torch-nvidia-apex zsh
nettle py-torch-scatter zstd
neuron py-torch-sparse zziplib
newt py-torch-spline-conv None
nextflow py-torchaudio None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Link Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.1.4, 2.0.2, 1.5.2
Build Dependencies:
autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
master, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Link Dependencies:
cuda, boost, dd4hep, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 0.9.2, 0.9.1
Build Dependencies:
exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0, xsdk-0.2.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
18.20, 18.19, 16.16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. Note: The version number is composed of the Amber version (major) and the tools version (minor). A manual download is required for both Amber and Amber tools. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

amdblis

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
blas
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
master, 20201104
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
develop, master, 0.1.0
Build Dependencies:
numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Link Dependencies:
blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind. AMP can be used to build powerful and flexible multi-physics simulation algorithms from lightweight operator, solver, linear algebra, material database, discretization, and meshing components. The AMP design is meant to enable existing investments in application codes to be leveraged without having to adopt dramatically different data structures while developing new computational science applications. Application components are represented as discrete mathematical operators that only require a minimal interface and through operator composition the incremental development of complex parallel applications is enabled. AMP is meant to allow application domain scientists, computer scientists and mathematicians to simulate, collaborate, and conduct research on various aspects of massively parallel simulation algorithms.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amrex

Homepage:
Spack package:
Versions:
develop, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : http://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, mesa18, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
mesa18, elfutils, libffi
Run Dependencies:
py-wheel, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, rocm-gdb
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake, binutils, boost, activeharmony, ompt-openmp
Link Dependencies:
binutils, boost, activeharmony, ompt-openmp
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.5
Build Dependencies:
cuda, cmake, nlohmann-json, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, nlohmann-json, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy, py-pybind11
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.0
Build Dependencies:
m4, autoconf, automake, libtool, valgrind
Link Dependencies:
valgrind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

argtable

Homepage:
Spack package:
Versions:
2-13
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
20.2.1
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
19.0.4-19.0.4-Ubuntu-16.04-x86_64, 19.0.4-Ubuntu-16.04-aarch64, 19.0.4-Ubuntu-14.04-x86_64, 19.0.4-Suse-15-x86_64, 19.0.4-Suse-12-x86_64, 19.0.4-Suse-12-aarch64, 19.0.4-Suse-11-x86_64, 19.0.4-Redhat-7.4-aarch64, 19.0.4-Redhat-7.2-ppc64le, 19.0.4-Redhat-7.0-x86_64, 19.0.4-Redhat-6.0-x86_64, 19.0.3-Ubuntu-16.04-x86_64, 19.0.3-Ubuntu-16.04-aarch64, 19.0.3-Ubuntu-14.04-x86_64, 19.0.3-Suse-12-x86_64, 19.0.3-Suse-12-aarch64, 19.0.3-Suse-11-x86_64, 19.0.3-Redhat-7.4-aarch64, 19.0.3-Redhat-7.2-ppc64le, 19.0.3-Redhat-7.0-x86_64, 19.0.3-Redhat-6.0-x86_64
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
8.6.9
Build Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl
Link Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.0.3, 9.0.2
Build Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.0.1, 4.0.1
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake
Link Dependencies:
comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Run Dependencies:
perl
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.70, 2.69, 2.62, 2.59, 2.13
Build Dependencies:
m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.16.1
Build Dependencies:
m4, autoconf, automake, libtool, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

bash

Homepage:
Spack package:
Versions:
5.0, 4.4, 4.3
Build Dependencies:
ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.0, 7.6.0, 7.4.4
Build Dependencies:
libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, python
Link Dependencies:
zlib
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Description:
Oracle Berkeley DB

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
diffutils, m4, perl, help2man
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blaspp

Homepage:
Spack package:
Versions:
master, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
cuda, cmake, blas
Link Dependencies:
cuda, blas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, zlib
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Description:
A Binary Decision Diagram library.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

cabana

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, kokkos-legacy, kokkos, mpi
Link Dependencies:
kokkos-legacy, kokkos, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cmake, boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
cairo, libsigcpp
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cmake, adiak, dyninst, papi, libpfm4, mpi, unwind, sosflow, python
Link Dependencies:
adiak, dyninst, papi, libpfm4, mpi, unwind, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.7.0
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0-alpha2, 4.0-alpha1, 3.11.6, 3.11.5
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ use case library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.0-preview3, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cbflib

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
m4
Description:
CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
rpcsvc-proto, libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elf, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
rpcsvc-proto, libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains the Krell Institute contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package:
Versions:
3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
gperf, libxslt, zlib
Link Dependencies:
gperf, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.5, 2.4
Build Dependencies:
cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccls

Homepage:
Spack package:
Versions:
0.20201025
Build Dependencies:
cmake, llvm, rapidjson
Link Dependencies:
llvm, rapidjson
Description:
C/C++ language server

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94h
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
1.9.10, 1.9.9, 1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
3.0.0, 2.0.0, 1.0.0
Build Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
2.0.0, 1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
3.49, 3.48, 3.47, 3.45, 3.42, 3.41, 3.37
Build Dependencies:
curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
0.7.0
Build Dependencies:
ncurses, readline, flex, bison, texinfo
Link Dependencies:
ncurses, readline
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
autoconf, automake, libtool, m4, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cget

Homepage:
Spack package:
Versions:
0.1.9
Build Dependencies:
python, py-setuptools, py-six, py-click, py-subprocess32
Run Dependencies:
python, py-six, py-click, py-subprocess32
Description:
Cmake package retrieval.

cgl

Homepage:
Spack package:
Versions:
0.60.3
Build Dependencies:
coinutils, osi, clp
Link Dependencies:
coinutils, osi, clp
Description:
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chai

Homepage:
Spack package:
Versions:
develop, master, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, umpire, raja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, umpire, raja
Description:
Copy-hiding array interface for data migration between memory spaces

changa

Homepage:
Spack package:
Versions:
master, 3.4
Build Dependencies:
charmpp
Link Dependencies:
charmpp
Description:
ChaNGa (Charm N-body GrAvity solver) is a code to perform collisionless N-body simulations. It can perform cosmological simulations with periodic boundary conditions in comoving coordinates or simulations of isolated stellar systems. It also can include hydrodynamics using the Smooth Particle Hydrodynamics (SPH) technique. It uses a Barnes-Hut tree to calculate gravity, with hexadecapole expansion of nodes and Ewald summation for periodic forces. Timestepping is done with a leapfrog integrator with individual timesteps for each particle.

channelflow

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, eigen, fftw, mpi, hdf5, netcdf-c, boost
Link Dependencies:
eigen, fftw, mpi, hdf5, netcdf-c, boost
Description:
Channelflow is a software system for numerical analysis of the incompressible fluid flow in channel geometries, written in C++.

chapel

Homepage:
Spack package:
Versions:
1.20.0, 1.19.0, 1.18.0
Description:
Chapel is a modern programming language that is parallel, productive, portable, scalable and open-source.

charliecloud

Homepage:
Spack package:
Versions:
master, 0.22, 0.21, 0.19, 0.18
Build Dependencies:
m4, autoconf, automake, libtool, rsync, py-sphinx, py-sphinx-rtd-theme
Run Dependencies:
python, py-lark-parser, py-requests
Test Dependencies:
bats
Description:
Lightweight user-defined software stacks for HPC.

charmpp

Homepage:
Spack package:
Versions:
master, 6.10.2, 6.10.1, 6.10.0, 6.9.0, 6.8.2, 6.8.1, 6.8.0, 6.7.1, 6.7.0, 6.6.1, 6.6.0, 6.5.1
Build Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Link Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Description:
Charm++ is a parallel programming framework in C++ supported by an adaptive runtime system, which enhances user productivity and allows programs to run portably from small multicore computers (your laptop) to the largest supercomputers.

chatterbug

Homepage:
Spack package:
Versions:
develop, 1.0
Build Dependencies:
mpi, scorep
Link Dependencies:
mpi, scorep
Description:
A suite of communication-intensive proxy applications that mimic commonly found communication patterns in HPC codes. These codes can be used as synthetic codes for benchmarking, or for trace generation using Score-P / OTF2.

check

Homepage:
Spack package:
Versions:
0.12.0, 0.11.0, 0.10.0
Description:
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

chgcentre

Homepage:
Spack package:
Versions:
1.6
Build Dependencies:
cmake, casacore, gsl
Link Dependencies:
casacore, gsl
Description:
The chgcentre tool can be used to change the phase centre of a measurement set.

chill

Homepage:
Spack package:
Versions:
master, 0.3
Build Dependencies:
boost, rose, autoconf, automake, libtool, m4, iegenlib, bison, flex, python, isl, gmp
Link Dependencies:
python
Run Dependencies:
rose, iegenlib
Description:
A polyheadral compiler for autotuning

chlorop

Homepage:
Spack package:
Versions:
1.1
Run Dependencies:
awk
Description:
Chlorop predicts the presence of chloroplast transit peptides in protein sequences and the location of potential cTP cleavage sites. You will need to obtain the tarball by visiting the URL and completing the form. You can then either run spack install with the tarball in the directory, or add it to a mirror. You will need to set the CHLOROTMP environment variable to the full path of the directory you want chlorop to use as a temporary directory.

chombo

Homepage:
Spack package:
Versions:
develop, 3.2
Build Dependencies:
blas, lapack, gmake, mpi, hdf5
Link Dependencies:
blas, lapack, mpi, hdf5
Description:
The Chombo package provides a set of tools for implementing finite difference and finite-volume methods for the solution of partial differential equations on block-structured adaptively refined logically rectangular (i.e. Cartesian) grids.

chrony

Homepage:
Spack package:
Versions:
3.5.1, 3.5, 3.4, 3.3
Build Dependencies:
ruby-asciidoctor, bison
Link Dependencies:
ruby-asciidoctor
Description:
chrony is a versatile implementation of the Network Time Protocol (NTP). It can synchronise the system clock with NTP servers, reference clocks(e.g. GPS receiver), and manual input using wristwatch and keyboard.

chrpath

Homepage:
Spack package:
Versions:
0.16
Description:
chrpath: Modifies the dynamic library load path (rpath and runpath) of compiled programs and libraries.

cinch

Homepage:
Spack package:
Versions:
master, 1.0
Description:
Cinch is a set of utilities and configuration options designed to make cmake builds easy to use and manage.

cistem

Homepage:
Spack package:
Versions:
1.0.0-beta
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

citcoms

Homepage:
Spack package:
Versions:
master, 3.3.1, 3.2.0
Build Dependencies:
mpi, zlib, automake, autoconf, libtool, m4, hc, cuda, hdf5
Link Dependencies:
mpi, zlib, hc, cuda, hdf5
Run Dependencies:
python
Description:
CitcomS is a finite element code designed to solve compressible thermochemical convection problems relevant to Earth's mantle.

cityhash

Homepage:
Spack package:
Versions:
master, 2013-07-31
Description:
CityHash, a family of hash functions for strings.

ck

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
CK calculates class-level and metric-level code metrics in Java projects by means of static analysis (i.e. no need for compiled code).

clamav

Homepage:
Spack package:
Versions:
0.101.2
Build Dependencies:
pkgconfig, json-c, openssl, pcre, yara, zlib, bzip2
Link Dependencies:
json-c, openssl, pcre, yara, zlib, bzip2, curl
Description:
Open source antivirus engine for detecting trojans, viruses, malware & other malicious threats.

clamr

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, mpi, mpe
Link Dependencies:
mpi, mpe
Description:
The CLAMR code is a cell-based adaptive mesh refinement (AMR) mini-app developed as a testbed for hybrid algorithm development using MPI and OpenCL GPU code.

clapack

Homepage:
Spack package:
Versions:
3.2.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CLAPACK is a f2c'ed version of LAPACK. The CLAPACK library was built using a Fortran to C conversion utility called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain C code, and then modified to improve readability. CLAPACK's goal is to provide LAPACK for someone who does not have access to a Fortran compiler.

clara

Homepage:
Spack package:
Versions:
1.1.5, 1.1.4, 1.1.3, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
A simple to use, composable, command line parser for C++ 11 and beyond.

claw

Homepage:
Spack package:
Versions:
master, 2.0.2, 2.0.1, 2.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0
Build Dependencies:
cmake, ant, bison, flex, java, libxml2
Link Dependencies:
java, libxml2
Description:
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran. From a single source code, it generates architecture specific code decorated with OpenMP or OpenACC

cleaveland4

Homepage:
Spack package:
Versions:
4.4
Build Dependencies:
perl, perl-math-cdf, bowtie, viennarna, r, samtools
Link Dependencies:
bowtie, viennarna, samtools
Run Dependencies:
perl, perl-math-cdf, r
Description:
CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

cleverleaf

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, samrai, hdf5, boost
Link Dependencies:
samrai, hdf5, boost
Description:
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National Laboratory. The primary goal of CleverLeaf is to evaluate the application of AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.

clfft

Homepage:
Spack package:
Versions:
2.12.2
Build Dependencies:
cmake, opencl, boost
Link Dependencies:
opencl, boost
Description:
a software library containing FFT functions written in OpenCL

clhep

Homepage:
Spack package:
Versions:
2.4.4.0, 2.4.1.3, 2.4.1.2, 2.4.1.0, 2.4.0.4, 2.4.0.2, 2.4.0.1, 2.4.0.0, 2.3.4.6, 2.3.4.5, 2.3.4.4, 2.3.4.3, 2.3.4.2, 2.3.3.2, 2.3.3.1, 2.3.3.0, 2.3.2.2, 2.3.1.1, 2.3.1.0, 2.3.0.0, 2.2.0.8, 2.2.0.5, 2.2.0.4
Build Dependencies:
cmake
Description:
CLHEP is a C++ Class Library for High Energy Physics.

cli11

Homepage:
Spack package:
Versions:
1.9.1
Build Dependencies:
cmake
Description:
CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

clinfo

Homepage:
Spack package:
Versions:
2.2.18.04.06
Build Dependencies:
opencl
Link Dependencies:
opencl
Description:
Print all known information about all available OpenCL platforms and devices in the system.

clingo

Homepage:
Spack package:
Versions:
master, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python
Link Dependencies:
python
Run Dependencies:
python
Description:
Clingo: A grounder and solver for logic programs Clingo is part of the Potassco project for Answer Set Programming (ASP). ASP offers a simple and powerful modeling language to describe combinatorial problems as logic programs. The clingo system then takes such a logic program and computes answer sets representing solutions to the given problem.

clingo-bootstrap

Homepage:
Spack package:
Versions:
master, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python
Link Dependencies:
python
Run Dependencies:
python
Description:
Clingo with some options used for bootstrapping

cln

Homepage:
Spack package:
Versions:
master, 1.3.6, 1.3.5, 1.3.4, 1.3.3, 1.3.2, 1.3.1, 1.3.0, 1.2.2, 1.2.1, 1.2.0
Build Dependencies:
autoconf, automake, libtool, m4, gmp, texinfo, gettext
Link Dependencies:
gmp
Description:
CLN is a library for efficient computations with all kinds of numbers in arbitrary precision. It features number classes for unlimited length integers, rationals, arbitrary precision floating point numbers and much more.

cloc

Homepage:
Spack package:
Versions:
1.84, 1.80, 1.74
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Count, or compute differences of, physical lines of source code in the given files (may be archives such as compressed tarballs or zip files) and/or recursively below the given directories.

cloog

Homepage:
Spack package:
Versions:
0.18.1, 0.18.0, 0.17.0
Build Dependencies:
gmp, isl
Link Dependencies:
gmp, isl
Description:
CLooG is a free software and library to generate code for scanning Z-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that reaches each integral point of one or more parameterized polyhedra.

cloverleaf

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
mpi, cuda
Link Dependencies:
mpi, cuda
Description:
Proxy Application. CloverLeaf is a miniapp that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

cloverleaf3d

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CloverLeaf3D is 3D version of the CloverLeaf mini- app. CloverLeaf is a mini-app that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

clp

Homepage:
Spack package:
Versions:
1.17.6, 1.17.4, 1.16.11
Build Dependencies:
coinutils, osi
Link Dependencies:
coinutils, osi
Description:
Clp (Coin-or linear programming) is an open-source linear programming solver written in C++.

clustal-omega

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
argtable
Link Dependencies:
argtable
Description:
Clustal Omega: the last alignment program you'll ever need.

clustalw

Homepage:
Spack package:
Versions:
2.1
Description:
Multiple alignment of nucleic acid and protein sequences.

cmake

Homepage:
Spack package:
Versions:
3.19.5, 3.19.4, 3.19.3, 3.19.2, 3.19.1, 3.19.0, 3.18.6, 3.18.5, 3.18.4, 3.18.3, 3.18.2, 3.18.1, 3.18.0, 3.17.5, 3.17.4, 3.17.3, 3.17.1, 3.17.0, 3.16.9, 3.16.8, 3.16.7, 3.16.6, 3.16.5, 3.16.4, 3.16.3, 3.16.2, 3.16.1, 3.16.0, 3.15.7, 3.15.6, 3.15.5, 3.15.4, 3.15.3, 3.15.2, 3.15.1, 3.15.0, 3.14.7, 3.14.6, 3.14.5, 3.14.4, 3.14.3, 3.14.2, 3.14.1, 3.14.0, 3.13.5, 3.13.4, 3.13.3, 3.13.2, 3.13.1, 3.13.0, 3.12.4, 3.12.3, 3.12.2, 3.12.1, 3.12.0, 3.11.4, 3.11.3, 3.11.2, 3.11.1, 3.11.0, 3.10.3, 3.10.2, 3.10.1, 3.10.0, 3.9.6, 3.9.4, 3.9.2, 3.9.0, 3.8.2, 3.8.1, 3.8.0, 3.7.2, 3.7.1, 3.6.1, 3.6.0, 3.5.2, 3.5.1, 3.5.0, 3.4.3, 3.4.0, 3.3.1, 3.1.0, 3.0.2, 2.8.10.2
Build Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, python, py-sphinx, openssl, ncurses
Link Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, openssl, ncurses
Description:
A cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

cmaq

Homepage:
Spack package:
Versions:
5.3.1, 5.3
Description:
Code base for the U.S. EPA's Community Multiscale Air Quality Model (CMAQ).

cmark

Homepage:
Spack package:
Versions:
0.29.0, 0.28.3, 0.28.2, 0.28.1, 0.28.0, 0.27.1
Build Dependencies:
cmake
Description:
cmark is the C reference implementation of CommonMark, a rationalized version of Markdown syntax with a spec.

cminpack

Homepage:
Spack package:
Versions:
master, 1.3.6
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
This is a C version of the minpack minimization package. Minpack includes software for solving nonlinear equations and nonlinear least squares problems.

cmocka

Homepage:
Spack package:
Versions:
1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
Unit-testing framework in pure C

cmockery

Homepage:
Spack package:
Versions:
0.1.2, 0.1.1, 0.1.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
A lightweight library to simplify and generalize the process of writing unit tests for C applications.

cmor

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2
Build Dependencies:
uuid, netcdf-c, udunits, hdf5, python, py-numpy
Link Dependencies:
uuid, netcdf-c, udunits, hdf5, python
Run Dependencies:
python, py-numpy
Description:
Climate Model Output Rewriter is used to produce CF-compliant netCDF files. The structure of the files created by the library and the metadata they contain fulfill the requirements of many of the climate community's standard model experiments.

cnmem

Homepage:
Spack package:
Versions:
git
Build Dependencies:
cmake
Description:
CNMem mempool for CUDA devices

cnpy

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
cnpy: library to read/write .npy and .npz files in C/C++.

cntk

Homepage:
Spack package:
Versions:
master, 2.0
Build Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Link Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Description:
The Microsoft Cognitive Toolkit is a unified deep-learning toolkit that describes neural networks as a series of computational steps via a directed graph.

cntk1bitsgd

Homepage:
Spack package:
Versions:
master, c8b77d
Description:
CNTK1bitSGD is the header-only 1-bit stochastic gradient descent (1bit- SGD) library for the Computational Network Toolkit (CNTK).

cnvnator

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Link Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Description:
A tool for CNV discovery and genotyping from depth-of-coverage by mapped reads.

codar-cheetah

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0, 0.5
Build Dependencies:
python
Run Dependencies:
python
Description:
CODAR Cheetah: The CODAR Experiment Harness for Exascale science applications.

code-server

Homepage:
Spack package:
Versions:
3.4.1, 3.1.1, 3.1.0
Build Dependencies:
git
Link Dependencies:
git
Description:
code-server is VS Code running on a remote server, accessible through the browser.

codec2

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
cmake
Description:
Open source speech codec designed for communications quality speech between 450 and 3200 bit/s. The main application is low bandwidth HF/VHF digital radio.

codes

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0
Build Dependencies:
autoconf, automake, libtool, m4, pkgconfig, bison, flex, mpi, ross, sst-dumpi
Link Dependencies:
mpi, ross, sst-dumpi
Description:
CO-Design of multi-layer Exascale Storage (CODES) simulation framework

coevp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
mpi, silo, flann, lapack
Link Dependencies:
mpi, silo, flann, lapack
Description:
CoEVP is a scale-bridging proxy application for embedded viscoplasticity applications. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. Due to the size and complexity of the studied models, as well as restrictions on distribution, the currently available LULESH proxy application provides the coarse-scale model implementation and the ASPA proxy application provides the adaptive sampling support.

cohmm

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
gnuplot
Link Dependencies:
gnuplot
Description:
An anticipated important use-case for next-generation supercomputing is multiscale modeling, in which continuum equations for large-scale material deformation are augmented with high-fidelity, fine-scale simulations that provide constitutive data on demand.

coin3d

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.0.0
Build Dependencies:
boost, doxygen, perl
Link Dependencies:
glu, gl, libsm, libxext, libice, uuid, libxcb, libxau
Description:
Coin is an OpenGL-based, 3D graphics library that has its roots in the Open Inventor 2.1 API, which Coin still is compatible with.

coinhsl

Homepage:
Spack package:
Versions:
2019.05.21, 2015.06.23, 2014.01.17, 2014.01.10
Build Dependencies:
blas
Link Dependencies:
blas
Description:
CoinHSL is a collection of linear algebra libraries (KB22, MA27, MA28, MA54, MA57, MA64, MA77, MA86, MA97, MC19, MC34, MC64, MC68, MC69, MC78, MC80, OF01, ZB01, ZB11) bundled for use with IPOPT and other applications that use these HSL routines. Note: CoinHSL is licensed software. You will need to request a license from Research Councils UK and download a .tar.gz archive of CoinHSL yourself. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

coinutils

Homepage:
Spack package:
Versions:
2.11.4
Description:
CoinUtils is an open-source collection of classes and helper functions that are generally useful to multiple COIN-OR projects.

collectd

Homepage:
Spack package:
Versions:
5.11.0, 5.10.0
Build Dependencies:
m4, autoconf, automake, libtool
Test Dependencies:
valgrind
Description:
The system statistics collection daemon.

collier

Homepage:
Spack package:
Versions:
1.2.5, 1.2.4, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1, 1.0
Build Dependencies:
cmake
Description:
COLLIER: A Complex One-Loop LIbrary with Extended Regularizations

colm

Homepage:
Spack package:
Versions:
0.12.0
Description:
Colm Programming Language Colm is a programming language designed for the analysis and transformation of computer languages. Colm is influenced primarily by TXL. It is in the family of program transformation languages.

colordiff

Homepage:
Spack package:
Versions:
1.0.19, 1.0.18
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Colorful diff utility.

comd

Homepage:
Spack package:
Versions:
develop, 1.1
Build Dependencies:
mpi, graphviz
Link Dependencies:
mpi, graphviz
Description:
CoMD is a reference implementation of classical molecular dynamics algorithms and workloads as used in materials science. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. New versions of CoMD will be released to incorporate the lessons learned from the co-design process.

comgr

Homepage:
Spack package:
Versions:
4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, llvm-amdgpu, rocm-device-libs, rocm-cmake
Link Dependencies:
zlib, z3, ncurses
Description:
This provides various Lightning Compiler related services. It currently contains one library, the Code Object Manager (Comgr)

commons-lang

Homepage:
Spack package:
Versions:
2.6, 2.4
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-lang3

Homepage:
Spack package:
Versions:
3.7
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-logging

Homepage:
Spack package:
Versions:
1.2, 1.1.3, 1.1.1
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
When writing a library it is very useful to log information. However there are many logging implementations out there, and a library cannot impose the use of a particular one on the overall application that the library is a part of. The Logging package is an ultra-thin bridge between different logging implementations. A library that uses the commons-logging API can be used with any logging implementation at runtime. Commons-logging comes with support for a number of popular logging implementations, and writing adapters for others is a reasonably simple task.

compiz

Homepage:
Spack package:
Versions:
0.7.8
Build Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Link Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Description:
compiz - OpenGL window and compositing manager. Compiz is an OpenGL compositing manager that use GLX_EXT_texture_from_pixmap for binding redirected top-level windows to texture objects. It has a flexible plug- in system and it is designed to run well on most graphics hardware.

compositeproto

Homepage:
Spack package:
Versions:
0.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Composite Extension. This package contains header files and documentation for the composite extension. Library and server implementations are separate.

conda4aarch64

Homepage:
Spack package:
Versions:
1.0.0
Description:
Conda for aarch64

conduit

Homepage:
Spack package:
Versions:
develop, master, 0.7.1, 0.7.0, 0.6.0, 0.5.1, 0.5.0, 0.4.0, 0.3.1, 0.3.0, 0.2.1, 0.2.0
Build Dependencies:
cmake, python, py-numpy, py-mpi4py, hdf5, silo, adios, zfp, mpi, py-sphinx, py-sphinx-rtd-theme, doxygen
Link Dependencies:
python, hdf5, silo, adios, zfp, mpi, doxygen
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. It is used for data coupling between packages in-core, serialization, and I/O tasks.

connect-proxy

Homepage:
Spack package:
Versions:
1.105
Description:
`connect.c` is a simple relaying command to make network connection via SOCKS and https proxy

conserver

Homepage:
Spack package:
Versions:
8.2.5, 8.2.4, 8.2.3, 8.2.2, 8.2.1
Description:
Conserver is an application that allows multiple users to watch a serial console at the same time.

console-bridge

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0, 0.5.1, 0.5.0, 0.4.4, 0.4.3
Build Dependencies:
cmake
Description:
console_bridge is a ROS-independent, pure CMake (i.e. non-catkin and non-rosbuild package) that provides logging calls that mirror those found in rosconsole, but for applications that are not necessarily using ROS.

constype

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
pkgconfig, util-macros
Description:
constype prints on the standard output the Sun code for the type of display that the specified device is. It was originally written for SunOS, but has been ported to other SPARC OS'es and to Solaris on both SPARC & x86.

consul

Homepage:
Spack package:
Versions:
1.8.1, 1.8.0, 1.7.6
Build Dependencies:
go
Link Dependencies:
go
Description:
Consul is a distributed, highly available, and data center aware solution to connect and configure applications across dynamic, distributed infrastructure.

converge

Homepage:
Spack package:
Versions:
2.4.10, 2.3.23, 2.2.0, 2.1.0, 2.0.0
Build Dependencies:
mpi, openmpi
Link Dependencies:
mpi, openmpi
Description:
CONVERGE is a revolutionary computational fluid dynamics (CFD) program that eliminates the grid generation bottleneck from the simulation process. CONVERGE was developed by engine simulation experts and is straightforward to use for both engine and non-engine simulations. Unlike many CFD programs, CONVERGE automatically generates a perfectly orthogonal, structured grid at runtime based on simple, user-defined grid control parameters. This grid generation method completely eliminates the need to manually generate a grid. In addition, CONVERGE offers many other features to expedite the setup process and to ensure that your simulations are as computationally efficient as possible.

corenlp

Homepage:
Spack package:
Versions:
4.0.0
Build Dependencies:
ant
Description:
Stanford CoreNLP provides a set of human language technology tools. It can give the base forms of words, their parts of speech, whether they are names of companies, people, etc., normalize dates, times, and numeric quantities, mark up the structure of sentences in terms of phrases and syntactic dependencies, indicate which noun phrases refer to the same entities, indicate sentiment, extract particular or open-class relations between entity mentions, get the quotes people said, etc.

coreutils

Homepage:
Spack package:
Versions:
8.31, 8.30, 8.29, 8.26, 8.23
Description:
The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system.

corset

Homepage:
Spack package:
Versions:
1.06
Description:
Corset is a command-line software program to go from a de novo transcriptome assembly to gene-level counts.

cosbench

Homepage:
Spack package:
Versions:
0.4.2, 0.4.1.0, 0.4.0.1
Run Dependencies:
java, curl
Description:
COSBench is a benchmarking tool to measure the performance of Cloud Object Storage services. Object storage is an emerging technology that is different from traditional file systems (e.g., NFS) or block device systems (e.g., iSCSI). Amazon S3 and Openstack* swift are well-known object storage solutions

cosma

Homepage:
Spack package:
Versions:
master, 2.3.0, 2.2.0, 2.0.7, 2.0.2
Build Dependencies:
cuda, cmake, mpi, blas, scalapack
Link Dependencies:
cuda, mpi, blas, scalapack
Description:
Distributed Communication-Optimal Matrix-Matrix Multiplication Library

cosmoflow-benchmark

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cuda, python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Link Dependencies:
cuda
Run Dependencies:
python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Description:
This is a an implementation of the CosmoFlow 3D convolutional neural network for benchmarking. It is written in TensorFlow with the Keras API and uses Horovod for distributed training.

cosmomc

Homepage:
Spack package:
Versions:
2016.11, 2016.06
Build Dependencies:
python, mpi, planck-likelihood, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Link Dependencies:
mpi, planck-likelihood
Run Dependencies:
python, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Description:
CosmoMC is a Fortran 2008 Markov-Chain Monte-Carlo (MCMC) engine for exploring cosmological parameter space, together with Fortran and python code for analysing Monte-Carlo samples and importance sampling (plus a suite of scripts for building grids of runs, plotting and presenting results).

cosp2

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CoSP2 represents a sparse linear algebra parallel algorithm for calculating the density matrix in electronic tructure theory. The algorithm is based on a recursive second-order Fermi- Operator expansion method (SP2) and is tailored for density functional based tight-binding calculations of non-metallic systems.

cotter

Homepage:
Spack package:
Versions:
master, 20190205
Build Dependencies:
cmake, erfa, pal, aoflagger
Link Dependencies:
erfa, pal, aoflagger
Description:
Andre Offringa's cotter pre-processing pipeline.

couchdb

Homepage:
Spack package:
Versions:
3.1.0, 3.0.1, 3.0.0
Build Dependencies:
icu4c, openssl, curl, node-js, mozjs, gmake, help2man, python, erlang
Link Dependencies:
icu4c, openssl, curl, node-js, mozjs
Run Dependencies:
python, erlang
Description:
A CouchDB server hosts named databases, which store documents. Each document is uniquely named in the database, and CouchDB provides a RESTful HTTP API for reading and updating (add, edit, delete) database documents.

cowsay

Homepage:
Spack package:
Versions:
3.04
Run Dependencies:
perl
Description:
A program that generates ASCII pictures of a cow with a message.

cp2k

Homepage:
Spack package:
Versions:
master, 8.1, 7.1, 6.1, 5.1, 4.1, 3.0
Build Dependencies:
cuda, python, blas, lapack, fftw-api, libxsmm, pkgconfig, libint, libxc, mpi, scalapack, cosma, elpa, plumed, pexsi, sirius, py-numpy, libvori, spglib, wannier90
Link Dependencies:
cuda, blas, lapack, fftw-api, libxsmm, libint, libxc, mpi, scalapack, cosma, elpa, plumed, pexsi, sirius, spglib
Description:
CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems

cpio

Homepage:
Spack package:
Versions:
2.13
Description:
GNU cpio copies files into or out of a cpio or tar archive. The archive can be another file on the disk, a magnetic tape, or a pipe.

cpmd

Homepage:
Spack package:
Versions:
4.3
Build Dependencies:
lapack, mpi
Link Dependencies:
lapack, mpi
Description:
The CPMD code is a parallelized plane wave / pseudopotential implementation of Density Functional Theory, particularly designed for ab-initio molecular dynamics. Move to new directory, download CPMD main archive and patch.to.XXXXs manually, and run Spack

cpp-httplib

Homepage:
Spack package:
Versions:
0.5.9, 0.5.8, 0.5.7, 0.5.6, 0.5.5, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.4.2, 0.3.3, 0.2.6, 0.2.1
Build Dependencies:
cmake
Description:
A C++ header-only HTTP/HTTPS server and client library.

cppad

Homepage:
Spack package:
Versions:
develop, 20170114
Build Dependencies:
cmake
Description:
A Package for Differentiation of C++ Algorithms.

cppcheck

Homepage:
Spack package:
Versions:
2.1, 1.87, 1.81, 1.78, 1.72, 1.68
Run Dependencies:
py-pygments
Description:
A tool for static C/C++ code analysis.

cppgsl

Homepage:
Spack package:
Versions:
master, 2.1.0, 2.0.0, 1.0.0
Build Dependencies:
cmake
Description:
C++ Guideline Support Library

cpprestsdk

Homepage:
Spack package:
Versions:
2.10.16, 2.9.1
Build Dependencies:
cmake, boost, openssl
Link Dependencies:
boost, openssl
Description:
The C++ REST SDK is a Microsoft project for cloud-based client-server communication in native code using a modern asynchronous C++ API design. This project aims to help C++ developers connect to and interact with services.

cppunit

Homepage:
Spack package:
Versions:
1.14.0, 1.13.2
Description:
Obsolete Unit testing framework for C++

cppzmq

Homepage:
Spack package:
Versions:
master, 4.6.0, 4.5.0, 4.4.1, 4.4.0, 4.3.0, 4.2.3, 4.2.2
Build Dependencies:
cmake, libzmq
Link Dependencies:
libzmq
Description:
C++ binding for 0MQ

cpu-features

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake
Description:
A cross platform C99 library to get cpu features at runtime.

cpuinfo

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Description:
cpuinfo is a library to detect essential for performance optimization information about host CPU.

cqrlib

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
libtool
Description:
CQRlib -- ANSI C API for Quaternion Rotations

cquery

Homepage:
Spack package:
Versions:
2018-08-23
Build Dependencies:
cmake, llvm
Link Dependencies:
llvm
Description:
a C++ header-only library for Nearest Neighbor (NN) search wih KD-trees.

cracklib

Homepage:
Spack package:
Versions:
2.9.7, 2.9.6, 2.9.5
Build Dependencies:
python, gettext, fmt, zlib
Link Dependencies:
gettext, fmt, zlib
Run Dependencies:
python
Description:
CrackLib tests passwords to determine whether they match certain security-oriented characteristics, with the purpose of stopping users from choosing passwords that are easy to guess.

cradl

Homepage:
Spack package: