Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 6647 mainline packages:

3dtk opencl-clhpp py-subprocess32
3proxy opencl-headers py-subrosa
7zip opencoarrays py-svgpathtools
abacus opencv py-svgutils
abduco opendatadetector py-svgwrite
abi-compliance-checker opendx py-symengine
abi-dumper openexr py-symfit
abinit openfast py-sympy
abseil-cpp openfdtd py-syned
abyss openfoam py-systemd-python
accfft openfoam-org py-tables
acct openfst py-tabulate
accumulo opengl py-tap-py
ace openglu py-tatsu
ack openimageio py-tblib
acl openipmi py-tbparse
acpica-tools openjdk py-templateflow
acpid openjpeg py-tempora
activeharmony openkim-models py-tenacity
activemq openldap py-tensorboard
acts openlibm py-tensorboard-data-server
acts-dd4hep openloops py-tensorboard-plugin-wit
addrwatch openmc py-tensorboardx
adept-utils openmm py-tensorflow
adf openmolcas py-tensorflow-datasets
adiak openmpi py-tensorflow-estimator
adios openmx py-tensorflow-hub
adios2 opennurbs py-tensorflow-metadata
adlbx openpa py-tensorflow-probability
admixtools openpbs py-termcolor
adms openpmd-api py-terminado
adol-c openrasmol py-terminaltables
advancecomp openresty py-tern
adwaita-icon-theme openscenegraph py-testfixtures
aegean openslide py-testinfra
aeskeyfind openslp py-testpath
aespipe openspeedshop py-testrepository
agile openspeedshop-utils py-testresources
agrep openssh py-testscenarios
aida openssl py-testtools
akantu openstf py-tetoolkit
alan opensubdiv py-text-unidecode
albany opentsdb py-textblob
albert openturns py-texttable
alembic openvdb py-tfdlpack
alglib openwsman py-theano
allpaths-lg opium py-thinc
alluxio optional-lite py-thirdorder
alpaka optipng py-threadpoolctl
alpgen opus py-tifffile
alps or-tools py-timm
alquimia oracle-instant-client py-tinyarray
alsa-lib oras py-tinycss2
aluminum orbit2 py-tinydb
ambari orc py-tokenize-rt
amber orca py-tokenizers
amd-aocl orfm py-toml
amdblis orientdb py-tomli
amdfftw orthofiller py-tomli-w
amdlibflame orthofinder py-tomlkit
amdlibm orthomcl py-tomopy
amdscalapack osi py-toolz
amg osmctools py-toposort
amg2013 osmesa py-torch
amgx osqp py-torch-cluster
aml ossp-uuid py-torch-geometric
amp osu-micro-benchmarks py-torch-nvidia-apex
ampl otf py-torch-scatter
ampliconnoise otf2 py-torch-sparse
ampt ovito py-torch-spline-conv
amr-wind p11-kit py-torchaudio
amrex p2300 py-torchdata
amrfinder p3dfft3 py-torchfile
amrvis p4est py-torchgeo
anaconda2 p7zip py-torchmeta
anaconda3 pacbio-daligner py-torchmetrics
andi pacbio-damasker py-torchsummary
angsd pacbio-dazz-db py-torchtext
ant pacbio-dextractor py-torchvision
antimony pacifica-cli py-tornado
antlr packmol py-tox
ants pacparser py-tpot
aocc pacvim py-tqdm
aocl-sparse pagit py-traceback2
aoflagger pagmo py-traitlets
aom pagmo2 py-traits
aomp pajeng py-traitsui
apachetop pal py-transformers
apcomp palisade-development py-transforms3d
ape paml py-treehash
aperture-photometry panda py-triangle
apex pandaseq py-trojanzoo-sphinx-theme
apfel pandoc py-tuiview
apktool pango py-tweedledum
apple-gl pangolin py-twine
apple-glu pangomm py-twisted
apple-libunwind papi py-typed-ast
apple-libuuid papyrus py-typeguard
applewmproto paradiseo py-types-python-dateutil
appres parallel py-types-requests
apptainer parallel-netcdf py-types-urllib3
apr parallelio py-typesentry
apr-util parallelmergetree py-typing
aragorn paraver py-typing-extensions
arbor paraview py-tzlocal
arborx parflow py-ucsf-pyem
archer parmetis py-ucx-py
argobots parmgridgen py-uhi
argon2 parmmg py-ujson
argp-standalone parquet-cpp py-umalqurra
args parquet-format py-umap-learn
argtable parsec py-umi-tools
aria2 parsimonator py-uncertainties
arm parsplice py-unicycler
arm-forge partitionfinder py-unidecode
armadillo pasta py-unittest2
armpl-gcc pastix py-unittest2py3k
arpack-ng patch py-unshare
arrayfire patchelf py-update-checker
arrow patchutils py-uproot
asagi pathfinder py-uproot3
ascent pax-utils py-uproot3-methods
asciidoc pbbam py-uproot4
asciidoc-py3 pbmpi py-uritemplate
asdcplib pbsuite py-urllib3
asdf-cxx pciutils py-urwid
asio pcl py-us
aspa pcma py-usgs
aspcud pcre py-utils
aspect pcre2 py-uvloop
aspell pcsclite py-uvw
aspell6-de pdc py-uwsgi
aspell6-en pdf2svg py-vcf-kit
aspell6-es pdftk py-vcrpy
aspera-cli pdsh py-vcstool
assimp pdt py-vcstools
astra pegtl py-vcversioner
astral pennant py-vector
astyle percept py-vector-quantize-pytorch
at-spi2-atk percona-server py-vermin
at-spi2-core perfstubs py-versioneer
atf perl py-vine
athena perl-acme-damn py-virtualenv
atk perl-algorithm-diff py-virtualenv-clone
atlas perl-alien-build py-virtualenvwrapper
atmi perl-alien-libxml2 py-visdom
atom-dft perl-alien-svn py-voluptuous
atompaw perl-app-cmd py-vsc-base
atop perl-array-utils py-vsc-install
attr perl-b-hooks-endofscope py-vsts
audacious perl-bignum py-vsts-cd-manager
audacity perl-bio-searchio-hmmer py-walinuxagent
audit-userspace perl-bioperl py-wand
augustus perl-bit-vector py-wandb
authd perl-cairo py-warlock
authselect perl-capture-tiny py-warpx
autoconf perl-carp-clan py-wasabi
autoconf-archive perl-cgi py-watchdog
autodiff perl-class-data-inheritable py-wcsaxes
autodock-gpu perl-class-inspector py-wcwidth
autodock-vina perl-class-load py-weave
autofact perl-class-load-xs py-webargs
autogen perl-clone py-webencodings
automaded perl-clone-choose py-webkit-server
automake perl-compress-raw-bzip2 py-weblogo
avizo perl-compress-raw-zlib py-webob
aws-parallelcluster perl-config-general py-websocket-client
aws-sdk-cpp perl-contextual-return py-websockets
awscli perl-cpan-meta-check py-werkzeug
axel perl-data-dumper py-wget
axl perl-data-optlist py-whatshap
axom perl-data-stag py-wheel
babelflow perl-date-manip py-whichcraft
babeltrace perl-db-file py-whoosh
bacio perl-dbd-mysql py-widgetsnbextension
backupninja perl-dbd-pg py-wincertstore
bam-readcount perl-dbd-sqlite py-word2number
bamaddrg perl-dbi py-wordcloud
bamdst perl-devel-cycle py-workload-automation
bamtools perl-devel-globaldestruction py-wradlib
bamutil perl-devel-overloadinfo py-wrapt
banner perl-devel-stacktrace py-wsproto
bannergrab perl-devel-symdump py-wstool
barrnap perl-digest-md5 py-wub
bart perl-digest-md5-file py-wurlitzer
barvinok perl-dist-checkconflicts py-ww
bash perl-encode-locale py-wxmplot
bash-completion perl-error py-wxpython
bashtop perl-eval-closure py-x21
bat perl-exception-class py-xarray
batchedblas perl-exporter-lite py-xattr
batctl perl-exporter-tiny py-xdot
bats perl-extutils-config py-xenv
baurmc perl-extutils-depends py-xgboost
bazel perl-extutils-helpers py-xlrd
bbcp perl-extutils-installpaths py-xlsxwriter
bbmap perl-extutils-makemaker py-xlwt
bc perl-extutils-pkgconfig py-xmlrunner
bcache perl-ffi-checklib py-xmltodict
bcftools perl-file-chdir py-xonsh
bcl2fastq2 perl-file-copy-recursive py-xopen
bdftopcf perl-file-find-rule py-xpyb
bdii perl-file-grep py-xrootdpyfs
bdsim perl-file-homedir py-xvfbwrapper
bdw-gc perl-file-listing py-xxhash
beagle perl-file-pushd py-yacs
beakerlib perl-file-remove py-yahmm
bear perl-file-sharedir-install py-yajl
beast-tracer perl-file-slurp py-yamlreader
beast1 perl-file-slurp-tiny py-yapf
beast2 perl-file-slurper py-yarl
bedops perl-file-which py-yaspin
bedtools2 perl-font-ttf py-yolk3k
beforelight perl-forks py-youtube-dl
benchmark perl-fth py-yq
berkeley-db perl-gd py-yt
berkeleygw perl-gdgraph py-ytopt
bertini perl-gdgraph-histogram py-ytopt-autotune
bgpdump perl-gdtextutil py-zarr
bib2xhtml perl-getopt-tabular py-zc-buildout
bigdft-atlab perl-graph py-zc-lockfile
bigdft-chess perl-graph-readwrite py-zict
bigdft-core perl-hash-merge py-zipfile-deflate64
bigdft-futile perl-html-parser py-zipp
bigdft-libabinit perl-html-tagset py-zope-event
bigdft-psolver perl-http-cookies py-zope-interface
bigdft-spred perl-http-daemon py-zxcvbn
bigdft-suite perl-http-date pygmo
bigreqsproto perl-http-message pythia6
bind9 perl-http-negotiate pythia8
binutils perl-inline python
bioawk perl-inline-c q-e-sirius
biobambam2 perl-io-all qbank
biobloom perl-io-compress qbox
biopieces perl-io-html qca
bird perl-io-prompt qcachegrind
bismark perl-io-sessiondata qd
bison perl-io-socket-ssl qemu
bitlbee perl-io-string qgis
bitmap perl-io-stringy qgraf
bitsery perl-io-tty qhull
blackhat perl-ipc-run qjson
blaspp perl-json qmcpack
blasr perl-libwww-perl qmd-progress
blasr-libcpp perl-libxml-perl qnnpack
blast-legacy perl-list-moreutils qorts
blast-plus perl-list-moreutils-xs qperf
blast2go perl-log-log4perl qrupdate
blat perl-logger-simple qscintilla
blaze perl-lwp-mediatypes qt
blis perl-lwp-protocol-https qt-creator
bliss perl-mailtools qtgraph
blitz perl-math-bezier qthreads
blktrace perl-math-bigint qtkeychain
bloaty perl-math-bigrat qtltools
blogbench perl-math-cdf qualimap
blt perl-math-cephes quantum-espresso
bmake perl-math-matrixreal quartz
bmi perl-math-round qucs
bml perl-math-vecstat quicksilver
bohrium perl-mce quinoa
boinc-client perl-mni-perllib quota
bolt perl-module-build qwt
bonniepp perl-module-build-tiny qwtpolar
bookleaf-cpp perl-module-corelist r
boost perl-module-implementation r-a4
boostmplcartesianproduct perl-module-install r-a4base
botan perl-module-runtime r-a4classif
bowtie perl-module-runtime-conflicts r-a4core
bowtie2 perl-module-scandeps r-a4preproc
boxlib perl-moose r-a4reporting
bpp-core perl-mozilla-ca r-abadata
bpp-phyl perl-mro-compat r-abaenrichment
bpp-phyl-omics perl-namespace-clean r-abind
bpp-popgen perl-net-http r-absseq
bpp-seq perl-net-scp-expect r-acde
bpp-seq-omics perl-net-ssleay r-acepack
bpp-suite perl-number-compare r-acgh
bracken perl-number-format r-acme
braker perl-object-insideout r-ada
branson perl-package-deprecationmanager r-adabag
breakdancer perl-package-stash r-ade4
bref3 perl-package-stash-xs r-adegenet
breseq perl-padwalker r-adegraphics
bricks perl-parallel-forkmanager r-adephylo
bridger perl-params-util r-adespatial
brigand perl-params-validate r-adgoftest
brltty perl-parse-recdescent r-adsplit
brotli perl-path-tiny r-aer
brpc perl-pdf-api2 r-afex
brunsli perl-pegex r-affxparser
brynet perl-perl-unsafe-signals r-affy
bsseeker2 perl-perl-version r-affycomp
bubblewrap perl-perl4-corelibs r-affycompatible
bucky perl-perl6-slurp r-affycontam
buddy perl-perlio-gzip r-affycoretools
bueno perl-perlio-utf8-strict r-affydata
bufr perl-readonly r-affyexpress
bumpversion perl-regexp-common r-affyilm
busco perl-scalar-list-utils r-affyio
busybox perl-scalar-util-numeric r-affypdnn
butter perl-set-intervaltree r-affyplm
butterflypack perl-set-intspan r-affyqcreport
bwa perl-set-scalar r-affyrnadegradation
bwtool perl-soap-lite r-agdex
byacc perl-star-fusion r-agilp
byobu perl-statistics-basic r-agimicrorna
byte-unixbench perl-statistics-descriptive r-aims
byteman perl-statistics-pca r-aldex2
bzip2 perl-sub-exporter r-allelicimbalance
c perl-sub-exporter-progressive r-alpine
c-ares perl-sub-identify r-als
c-blosc perl-sub-install r-alsace
c-blosc2 perl-sub-name r-altcdfenvs
c-lime perl-sub-uplevel r-amap
c3d perl-svg r-amelia
ca-certificates-mozilla perl-swissknife r-ampliqueso
cabana perl-sys-sigaction r-analysispageserver
cachefilesd perl-task-weaken r-anaquin
caffe perl-term-readline-gnu r-aneufinder
cairo perl-termreadkey r-aneufinderdata
cairomm perl-test-cleannamespaces r-animation
caliper perl-test-deep r-annaffy
callflow perl-test-differences r-annotate
callpath perl-test-exception r-annotationdbi
camellia perl-test-fatal r-annotationfilter
camp perl-test-memory-cycle r-annotationforge
camx perl-test-more r-annotationhub
canal perl-test-most r-anytime
candle-benchmarks perl-test-needs r-aod
cans perl-test-output r-ape
cantera perl-test-requires r-aplot
canu perl-test-requiresinternet r-argparse
cap3 perl-test-warn r-aroma-light
capnproto perl-test-warnings r-ash
capstone perl-text-csv r-askpass
cardioid perl-text-diff r-assertive
care perl-text-format r-assertive-base
casacore perl-text-glob r-assertive-code
cask perl-text-simpletable r-assertive-data
casper perl-text-soundex r-assertive-data-uk
cassandra perl-text-unidecode r-assertive-data-us
catalyst perl-thread-queue r-assertive-datetimes
catch2 perl-threads r-assertive-files
cbc perl-time-hires r-assertive-matrices
cbench perl-time-piece r-assertive-models
cbflib perl-timedate r-assertive-numbers
cblas perl-tk r-assertive-properties
cbtf perl-try-tiny r-assertive-reflection
cbtf-argonavis perl-uri r-assertive-sets
cbtf-argonavis-gui perl-uri-encode r-assertive-strings
cbtf-krell perl-want r-assertive-types
cbtf-lanl perl-www-robotrules r-assertthat
cc65 perl-xml-dom r-backports
ccache perl-xml-dom-xpath r-bamsignals
ccfits perl-xml-filter-buffertext r-base64
ccls perl-xml-libxml r-base64enc
ccs-qcd perl-xml-libxslt r-bayesm
cctools perl-xml-namespacesupport r-bayesplot
cdbfasta perl-xml-parser r-bbmisc
cdd perl-xml-parser-lite r-beachmat
cddlib perl-xml-quote r-beanplot
cdecimal perl-xml-regexp r-beeswarm
cdhit perl-xml-sax r-bfast
cdo perl-xml-sax-base r-bfastspatial
ceed perl-xml-sax-writer r-bglr
celeritas perl-xml-simple r-bh
cepgen perl-xml-twig r-biasedurn
cereal perl-xml-writer r-bibtex
ceres-solver perl-xml-xpathengine r-bigalgebra
cfitsio perl-yaml r-bigmemory
cgal perl-yaml-libyaml r-bigmemory-sri
cgdb perl-yaml-tiny r-bindr
cgdcbxd pestpp r-bindrcpp
cget petaca r-bio3d
cgl petsc r-biobase
cgm pexsi r-biocfilecache
cgns pfapack r-biocgenerics
chaco pfft r-biocinstaller
chai pflask r-biocio
chameleon pflotran r-biocmanager
changa pfunit r-biocneighbors
channelflow pgdspider r-biocparallel
chaparral pgi r-biocsingular
chapel pgplot r-biocstyle
chaplin phantompeakqualtools r-biocversion
charliecloud phast r-biom-utils
charmpp phasta r-biomart
chatterbug phist r-biomartr
check phoenix r-biomformat
chgcentre photos r-biostrings
chill photos-f r-biovizbase
chlorop php r-bit
chombo phrap-crossmatch-swat r-bit64
chrony phred r-bitops
chrpath phylip r-blavaan
cinch phylobayesmpi r-blob
circos phyluce r-blockmodeling
cistem picard r-bluster
citcoms picsar r-bmp
cityhash picsarlite r-bookdown
cjson pidx r-boot
ck pig r-boruta
clamav pigz r-brew
clamr pika r-bridgesampling
clapack pilon r-brio
clara pindel r-brms
claw pinentry r-brobdingnag
clblast pinfo r-broom
cleaveland4 pipework r-bsgenome
cleverleaf piranha r-bsgenome-hsapiens-ucsc-hg19
clfft pism r-bslib
clhep pixman r-bsseq
cli11 pixz r-bumphunter
clinfo pkg-config r-bwstest
clingo pkgconf r-c50
clingo-bootstrap pktools r-ca
cln planck-likelihood r-cachem
cloc plasma r-cairo
cloog platypus r-callr
cloverleaf plink r-car
cloverleaf3d plink-ng r-caracas
clp plplot r-cardata
clustal-omega plumed r-caret
clustalw ply r-caretensemble
cmake pmdk r-caroline
cmaq pmemkv r-category
cmark pmerge r-catools
cmdstan pmgr-collective r-cca
cminpack pmix r-ccp
cmocka pmlib r-cdcfluview
cmockery pnfft r-cellranger
cmor pngquant r-champ
cni-plugins pngwriter r-champdata
cnmem pnmpi r-checkmate
cnpy poamsa r-checkpoint
cntk pocl r-chemometrics
cntk1bitsgd podio r-chipseq
cnvnator podman r-chron
codar-cheetah poke r-circlize
code-server polymake r-circstats
codec2 poplddecay r-class
codes poppler r-classint
coevp poppler-data r-cli
cohmm popt r-clipr
coin3d porta r-clisymbols
coinhsl portage r-clue
coinutils portcullis r-cluster
collectd ports-of-call r-clustergeneration
collier postgis r-clusterprofiler
colm postgresql r-cmdstanr
colordiff povray r-cner
comd powerapi r-coda
comgr powertop r-codetools
commons-lang ppl r-codex
commons-lang3 pplacer r-coin
commons-logging ppopen-appl-amr-fdm r-colorspace
compadre ppopen-appl-bem r-colourpicker
compiz ppopen-appl-bem-at r-combinat
compose ppopen-appl-dem-util r-commonmark
compositeproto ppopen-appl-fdm r-complexheatmap
conda4aarch64 ppopen-appl-fdm-at r-compositions
conduit ppopen-appl-fem r-compquadform
conmon ppopen-appl-fvm r-condop
connect-proxy ppopen-at r-conquer
conserver ppopen-math-mp r-construct
console-bridge ppopen-math-vis r-convevol
constype prank r-copula
consul precice r-corhmm
converge predixy r-corpcor
cool premake-core r-corrplot
coral presentproto r-countrycode
corenlp preseq r-covr
coreutils presto r-cowplot
corset price r-cpp11
cosbench primer3 r-crayon
cosign prinseq-lite r-credentials
cosma printproto r-crosstalk
cosmoflow-benchmark prism r-crul
cosmomc prmon r-ctc
cosp2 prng r-cubature
costa probconsrna r-cubist
cotter procenv r-curl
couchdb process-in-process r-dada2
cowsay procps r-data-table
cp2k procps-ng r-dbi
cpio prod-util r-dbplyr
cplex prodigal r-debugme
cpmd professor r-decipher
cpp-argparse profugusmc r-delayedarray
cpp-httplib proj r-delayedmatrixstats
cpp-termcolor prokka r-deldir
cppad prometheus r-dendextend
cppcheck prophecy4f r-deoptim
cppcodec protobuf r-deoptimr
cppcoro protobuf-c r-deriv
cppgsl proxymngr r-desc
cpprestsdk prrte r-deseq
cppunit pruners-ninja r-deseq2
cppzmq ps-lite r-desolve
cpu-features pscmc r-devtools
cpuinfo psi4 r-dexseq
cqrlib psimd r-diagrammer
cquery pslib r-dicekriging
cracklib psm r-dichromat
cradl psmc r-diffobj
cram pstreams r-diffusionmap
cray-fftw pthreadpool r-digest
cray-libsci pugixml r-diptest
cray-mpich pulseaudio r-dirichletmultinomial
cray-mvapich2 pumi r-dismo
cray-pmi pv r-distributional
creduce pvm r-diversitree
crmc pwgen r-dmrcate
cromwell pxz r-dnacopy
cromwell-womtool py-3to2 r-do-db
cronie py-4suite-xml r-domc
crtm py-abcpy r-doparallel
crunch py-abipy r-dorng
cryptopp py-absl-py r-dose
cryptsetup py-accimage r-dosnow
csa-c py-acme-tiny r-dotcall64
cscope py-adal r-downloader
csdp py-adb-enhanced r-dplyr
ctffind py-addict r-dqrng
ctpl py-adios r-dss
ctre py-advancedhtmlparser r-dt
cub py-aenum r-dtplyr
cuba py-affine r-dtw
cube py-agate r-dygraphs
cube-blade py-agate-dbf r-dynamictreecut
cubelib py-agate-excel r-e1071
cubew py-agate-sql r-earth
cubist py-aiobotocore r-ecp
cuda py-aiocontextvars r-edger
cuda-memtest py-aiodns r-effects
cudnn py-aiofiles r-elemstatlearn
cufflinks py-aiohttp r-ellipse
cunit py-aiohttp-cors r-ellipsis
cupla py-aioitertools r-emmeans
cups py-aioredis r-emmli
curl py-aiosignal r-energy
cusz py-aiosqlite r-enrichplot
cutensor py-alabaster r-ensembldb
cutlang py-alembic r-envstats
cutlass py-alphafold r-ergm
cvector py-altair r-estimability
cvs py-altgraph r-europepmc
cxx py-amqp r-evaluate
cxxopts py-amrex r-evd
cxxtest py-angel r-exactextractr
cyrus-sasl py-aniso8601 r-exomecopy
czmq py-anndata r-exomedepth
dakota py-annexremote r-experimenthub
daligner py-ansi2html r-expint
dalton py-ansible r-expm
damageproto py-antlr4-python3-runtime r-factoextra
damaris py-anuga r-factominer
damask py-anyio r-fansi
damask-grid py-anytree r-farver
damask-mesh py-apache-beam r-fastcluster
damselfly py-apache-libcloud r-fastdigest
darshan-runtime py-apex r-fastica
darshan-util py-apipkg r-fastmap
dash py-appdirs r-fastmatch
datamash py-applicationinsights r-fastmatrix
dataspaces py-appnope r-fda
datatransferkit py-apptools r-fdb-infiniummethylation-hg18
date py-apscheduler r-fdb-infiniummethylation-hg19
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dbow2 py-argh r-fgsea
dbus py-argon2-cffi r-fields
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dcap py-args r-findpython
dcm2niix py-arm-pyart r-fit-models
dcmtk py-arrow r-fitdistrplus
dd4hep py-arviz r-flashclust
ddd py-asciitree r-flexclust
ddt py-asdf r-flexmix
dealii py-ase r-fnn
dealii-parameter-gui py-asgiref r-fontawesome
debbuild py-asn1crypto r-forcats
debugedit py-aspy-yaml r-foreach
decentralized-internet py-asserts r-forecast
deconseq-standalone py-asteval r-foreign
dejagnu py-astor r-formatr
delly2 py-astpretty r-formula
delphes py-astroid r-fpc
delta py-astropy r-fpcompare
denovogear py-astropy-healpix r-fracdiff
dftbplus py-astropy-helpers r-fs
dftd3-lib py-asttokens r-futile-logger
dftd4 py-astunparse r-futile-options
dftfe py-async-generator r-future
dhpmm-f py-async-lru r-future-apply
dhtest py-async-timeout r-gamlss
dia py-asyncio r-gamlss-data
dialign py-asynctest r-gamlss-dist
dialign-tx py-atomicwrites r-gamm4
diamond py-atpublic r-gargle
dicom3tools py-atropos r-gbm
diffmark py-ats r-gbrd
diffsplice py-attrs r-gcrma
diffutils py-audioread r-gdalutilities
dihydrogen py-autograd r-gdalutils
dimemas py-autograd-gamma r-gdata
ding-libs py-automat r-gdsfmt
dire py-autopep8 r-geiger
direnv py-auxlib r-genefilter
discovar py-avro r-genelendatabase
discovardenovo py-avro-json-serializer r-genemeta
disktype py-avro-python3 r-geneplotter
dislin py-awesome-slugify r-generics
distbench py-awkward r-genetics
distcc py-awkward0 r-genie3
diy py-awkward1 r-genomeinfodb
dlib py-azote r-genomeinfodbdata
dlpack py-azure-batch r-genomicalignments
dmd py-azure-cli r-genomicfeatures
dmidecode py-azure-cli-command-modules-nspkg r-genomicranges
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dmxproto py-azure-cli-telemetry r-geometries
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dnstop py-azure-cosmos r-geonames
dnstracer py-azure-datalake-store r-geoquery
docbook-xml py-azure-functions-devops-build r-geor
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dock py-azure-identity r-gert
dos2unix py-azure-keyvault r-getopt
dosfstools py-azure-keyvault-certificates r-getoptlong
dotconf py-azure-keyvault-keys r-ggally
dotnet-core-sdk py-azure-keyvault-nspkg r-ggbeeswarm
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doxygen py-azure-loganalytics r-ggdendro
dpcpp py-azure-mgmt-advisor r-ggforce
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draco py-azure-mgmt-appconfiguration r-ggjoy
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dri3proto py-azure-mgmt-botservice r-ggrepel
drill py-azure-mgmt-cdn r-ggridges
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dtc py-azure-mgmt-datalake-analytics r-gitcreds
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dtf py-azure-mgmt-datamigration r-glmgampoi
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ebms py-azure-mgmt-loganalytics r-googlevis
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eccodes py-azure-mgmt-managementgroups r-gosemsim
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ecflow py-azure-mgmt-marketplaceordering r-gostats
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eclipse-gcj-parser py-azure-mgmt-monitor r-gparotation
ecos py-azure-mgmt-msi r-gplots
ecoslim py-azure-mgmt-netapp r-graph
ecp-data-vis-sdk py-azure-mgmt-network r-graphlayouts
ecp-proxy-apps py-azure-mgmt-nspkg r-grbase
ed py-azure-mgmt-policyinsights r-gridbase
editline py-azure-mgmt-privatedns r-gridextra
editres py-azure-mgmt-rdbms r-gridgraphics
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eigen py-azure-mgmt-redis r-gsl
eigenexa py-azure-mgmt-relay r-gsodr
elasticsearch py-azure-mgmt-reservations r-gss
elemental py-azure-mgmt-resource r-gstat
elfio py-azure-mgmt-search r-gsubfn
elfutils py-azure-mgmt-security r-gtable
elk py-azure-mgmt-servicebus r-gtools
elmerfem py-azure-mgmt-servicefabric r-gtrellis
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elsd py-azure-mgmt-sql r-gwmodel
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ember py-azure-mgmt-web r-hdf5r
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eospac py-azureml-dataset-runtime r-htmlwidgets
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epics-ca-gateway py-azureml-pipeline-core r-httpuv
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etcd py-backports-lzma r-impute
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evemu py-backports-weakref r-interactivedisplaybase
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expect py-biopython r-kegggraph
express py-bitarray r-keggrest
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fastp py-bsddb3 r-leiden
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fastqc py-bz2file r-libcoin
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fgsl py-charm4py r-mass
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figlet py-checkm-genome r-matlab
figtree py-cheetah r-matr
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fish py-clean-text r-memoise
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flann py-clikit r-mgraster
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flash py-clint r-microbenchmark
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flex py-cnvkit r-mixtools
flexi py-coapthon3 r-mlbench
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folly py-colorpy r-multicool
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fontcacheproto py-colossalai r-multtest
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form py-configobj r-mzid
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fortran py-configspace r-nada
fortrilinos py-connectionpool r-nanotime
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foundationdb py-contextily r-ncdf4
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fpc py-contextvars r-neuralnet
fpchecker py-control r-nfactors
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fpocket py-copulas r-nmf
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fr-hit py-counter r-nnet
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frontier-client py-cryptography r-optimx
frontistr py-cssselect r-optparse
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fstobdf py-cuml r-packrat
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ftgl py-current r-paleotree
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ftk py-cvxopt r-pan
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fujitsu-frontistr py-cylp r-party
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fujitsu-ssl2 py-cyordereddict r-patchwork
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fxt py-dadi r-pbkrtest
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fzf py-dask r-pcapp
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g2c py-dask-ml r-permute
g2o py-dask-sphinx-theme r-pfam-db
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g4photonevaporation py-datalad-webapp r-picante
g4pii py-datasets r-pillar
g4radioactivedecay py-dateparser r-pinfsc50
g4realsurface py-datrie r-pixmap
g4saiddata py-dbf r-pkgbuild
g4tendl py-dbfread r-pkgcache
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gams py-debtcollector r-pkgdepends
ganglia py-debugpy r-pkgload
gapbs py-decorator r-pkgmaker
gapcloser py-deepdiff r-plogr
gapfiller py-deepecho r-plot3d
garfieldpp py-deephyper r-plotly
gasnet py-deepsig r-plotmo
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gate py-deeptoolsintervals r-pls
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gaudi py-deprecated r-png
gaussian py-deprecation r-polspline
gaussian-src py-descartes r-polyclip
gaussian-view py-devito r-polynom
gawk py-devlib r-pool
gbl py-dgl r-poorman
gblocks py-dh-scikit-optimize r-popgenome
gcc py-dictdiffer r-popvar
gccmakedep py-dill r-posterior
gccxml py-dipy r-powerlaw
gchp py-discover r-prabclus
gconf py-diskcache r-pracma
gcta py-distance r-praise
gdal py-distlib r-preprocesscore
gdb py-distributed r-prettydoc
gdbm py-distro r-prettyunits
gdk-pixbuf py-django r-proc
gdl py-dlcpar r-processx
gdrcopy py-dm-haiku r-prodlim
geant4 py-dm-tree r-progress
geant4-data py-dnaio r-progressr
geant4-vmc py-docker r-proj
gearshifft py-dockerpy-creds r-proj4
gemma py-docopt r-projpred
gemmlowp py-docutils r-promises
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genesis py-dominate r-proto
genfit py-dotnetcore2 r-proxy
gengeo py-downhill r-pryr
gengetopt py-doxypy r-ps
genie py-doxypypy r-pscbs
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genometools py-dpath r-psych
genomeworks py-drmaa r-ptw
genrich py-dryscrape r-purrr
geode py-duecredit r-pvclust
geoip py-dulwich r-qqconf
geoip-api-c py-dunamai r-qs
geopm py-dvc r-qtl
geos py-dxchange r-quadprog
gettext py-dxfile r-quantmod
gflags py-earthengine-api r-quantreg
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gh py-easybuild-easyconfigs r-questionr
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ghostscript py-eccodes r-qvalue
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git-lfs py-elephant r-ranger
gitconddb py-emcee r-rann
gl2ps py-emoji r-rapidjsonr
glab py-empy r-rapiserialize
glew py-entrypoints r-rappdirs
glfmultiples py-enum34 r-raster
glfw py-envisage r-rbgl
glib py-ephem r-rbibutils
glib-networking py-epydoc r-rbokeh
glibmm py-espresso r-rcmdcheck
glimmer py-espressopp r-rcolorbrewer
glm py-et-xmlfile r-rcpp
global py-etelemetry r-rcppannoy
globalarrays py-eventlet r-rcpparmadillo
glog py-execnet r-rcppblaze
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glpk py-exifread r-rcppcnpy
glproto py-exodus-bundler r-rcppdate
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glusterfs py-extras r-rcppeigen
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gmake py-f90wrap r-rcppml
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gmime py-faker r-rcppprogress
gmodel py-falcon r-rcpproll
gmp py-fallocate r-rcpptoml
gmsh py-fastai r-rcppziggurat
gmt py-fastaindex r-rcurl
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gnome-common py-fastcore r-readr
gnuconfig py-fastcov r-readxl
gnupg py-fastdownload r-reams
gnuplot py-fastdtw r-recipes
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gnutls py-fastjsonschema r-rematch
go py-fastprogress r-rematch2
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go-md2man py-faststructure r-renv
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goma py-fenics-dijitso r-repr
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googletest py-fenics-ffc r-reproducible
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goshimmer py-fenics-fiat r-reshape
gotcha py-fenics-instant r-reshape2
gource py-fenics-ufl r-restfulr
gpcnet py-filelock r-reticulate
gpdb py-filemagic r-rex
gperf py-filterpy r-rfast
gperftools py-findlibs r-rferns
gpgme py-fiona r-rgdal
gpi-2 py-fire r-rgenoud
gpi-space py-fiscalyear r-rgeos
gplates py-fisher r-rgexf
gprolog py-fits-tools r-rgl
gptl py-fixtures r-rgooglemaps
gptune py-flake8 r-rgraphviz
gpu-burn py-flake8-import-order r-rhdf5
gqrx py-flake8-polyfill r-rhdf5filters
gr-osmosdr py-flameprof r-rhdf5lib
grabix py-flask r-rhmmer
grace py-flask-babel r-rhtslib
grackle py-flask-compress r-rinside
gradle py-flask-cors r-rio
grads py-flask-restful r-rjags
grafana py-flask-socketio r-rjava
grandr py-flatbuffers r-rjson
graph500 py-flatten-dict r-rjsonio
graphblast py-flawfinder r-rlang
graphicsmagick py-flexmock r-rle
graphite2 py-flexx r-rmariadb
graphlib py-flit r-rmarkdown
graphmap py-flit-core r-rminer
graphviz py-flufl-lock r-rmpfr
grass py-flye r-rmpi
graylog2-server py-fn-py r-rms
grep py-fonttools r-rmutil
grib-api py-ford r-rmysql
grib-util py-formatizer r-rnaseqmap
grid py-formulaic r-rncl
gridlab-d py-fortran-language-server r-rnexml
grnboost py-fortranformat r-rngtools
groff py-fparser r-rnoaa
gromacs py-fprettify r-robust
gromacs-chain-coordinate py-fracridge r-robustbase
gromacs-swaxs py-freezegun r-roc
grpc py-frozenlist r-rocr
gsettings-desktop-schemas py-fs r-rodbc
gsl py-fsspec r-rook
gslib py-ftfy r-rots
gtk-doc py-funcsigs r-roxygen2
gtkmm py-functools32 r-rpart
gtkorvo-atl py-funcy r-rpart-plot
gtkorvo-cercs-env py-fury r-rpmm
gtkorvo-dill py-fusepy r-rpostgres
gtkorvo-enet py-future r-rpostgresql
gtkplus py-futures r-rprojroot
gtksourceview py-fuzzywuzzy r-rpsychi
gts py-fypp r-rrblup
guacamole-client py-gast r-rrcov
guacamole-server py-gcovr r-rrpp
guidance py-gcs-oauth2-boto-plugin r-rsamtools
guile py-gdbgui r-rsconnect
gunrock py-gdc-client r-rsnns
gurobi py-gee-asset-manager r-rsolnp
gxsview py-geeadd r-rspectra
gzip py-geeup r-rsqlite
h2database py-gemini r-rstan
h5bench py-genders r-rstantools
h5cpp py-geneimpacts r-rstatix
h5hut py-genshi r-rstudioapi
h5part py-gensim r-rsvd
h5utils py-geoalchemy2 r-rtracklayer
h5z-zfp py-geocube r-rtsne
hacckernels py-geographiclib r-runit
hackrf-host py-geopandas r-runjags
hadoop py-geoplot r-ruv
hadoop-xrootd py-geopy r-rvcheck
hal py-getorganelle r-rversions
halc py-gevent r-rvest
half py-gf256 r-rviennacl
hama py-gffutils r-rzmq
hapcut2 py-ghp-import r-s2
hapdip py-gimmik r-s4vectors
haploview py-gin-config r-samr
haproxy py-git-review r-sandwich
hardlink py-gitdb r-sass
harfbuzz py-gitpython r-satellite
harminv py-glmnet r-scaledmatrix
hashcat py-glmsingle r-scales
haveged py-glob2 r-scater
hazelcast py-globus-sdk r-scattermore
hbase py-gluoncv r-scatterpie
hbm-dramsim2 py-glymur r-scatterplot3d
hc py-gnuplot r-scdblfinder
hcoll py-goatools r-scran
hdf py-gooey r-scrime
hdf-eos2 py-google r-sctransform
hdf-eos5 py-google-api-core r-scuttle
hdf5 py-google-api-python-client r-sdmtools
hdf5-blosc py-google-apitools r-segmented
hdf5-vfd-gds py-google-auth r-selectr
hdf5-vol-async py-google-auth-httplib2 r-seqinr
hdf5-vol-cache py-google-auth-oauthlib r-seqlogo
hdf5-vol-external-passthrough py-google-cloud-core r-servr
hdf5-vol-log py-google-cloud-storage r-sessioninfo
hdfview py-google-crc32c r-seurat
healpix-cxx py-google-pasta r-seuratobject
heaptrack py-google-resumable-media r-sf
heasoft py-googleapis-common-protos r-sfheaders
heffte py-googledrivedownloader r-sfsmisc
helib py-gosam r-shadowtext
helics py-gpaw r-shape
help2man py-gpustat r-shiny
henson py-gputil r-shinydashboard
hepmc py-gpy r-shinyfiles
hepmc3 py-gpyopt r-shinyjs
hepmcanalysis py-gpytorch r-shinystan
heppdt py-gql r-shinythemes
heputils py-grandalf r-shortread
hercules py-graphlib-backport r-siggenes
hermes py-graphql-core r-signac
herwig3 py-graphviz r-simpleaffy
herwigpp py-greenlet r-singlecellexperiment
hevea py-grequests r-sitmo
hh-suite py-griddataformats r-sm
hibench py-griffe r-smoof
hic-pro py-grpcio r-sn
hicolor-icon-theme py-grpcio-tools r-snakecase
hicops py-gsd r-snow
highfive py-gsi r-snowfall
highway py-gsutil r-snprelate
highwayhash py-gtdbtk r-snpstats
hiop py-guidata r-som
hip py-guiqwt r-somaticsignatures
hip-rocclr py-gym r-sourcetools
hipace py-h11 r-sp
hipblas py-h2 r-spacetime
hipcub py-h5glance r-spades
hipfft py-h5netcdf r-spades-addins
hipfort py-h5py r-spades-core
hipify-clang py-h5sh r-spades-tools
hipsolver py-hacking r-spam
hipsparse py-haphpipe r-sparsem
hipsycl py-hatch-vcs r-sparsematrixstats
hiredis py-hatchet r-spatial
hisat2 py-hatchling r-spatialeco
hisea py-hdbscan r-spatialpack
hive py-hdfs r-spatialreg
hivex py-healpy r-spatstat
hmmer py-heapdict r-spatstat-core
hohqmesh py-hep-ml r-spatstat-data
homer py-hepdata-converter r-spatstat-geom
hoomd-blue py-hepdata-lib r-spatstat-linnet
hoppet py-hepdata-validator r-spatstat-random
hotspot py-hepunits r-spatstat-sparse
hpcc py-hieroglyph r-spatstat-utils
hpccg py-hiredis r-spdata
hpcg py-hist r-spdep
hpctoolkit py-histbook r-speedglm
hpcviewer py-histogrammar r-spem
hpcx-mpi py-histoprint r-splancs
hpddm py-holland-backup r-splitstackshape
hpgmg py-horovod r-sqldf
hping py-hpack r-squarem
hpl py-hpbandster r-squash
hpx py-hpcbench r-sseq
hpx-kokkos py-hpccm r-stabledist
hpx5 py-hstspreload r-stanheaders
hsa-rocr-dev py-html2text r-stargazer
hsakmt py-html5lib r-statmod
hsakmt-roct py-htmlgen r-statnet-common
hsf-cmaketools py-htseq r-stringfish
hssp py-httpbin r-stringi
hstr py-httpcore r-stringr
hto4l py-httplib2 r-strucchange
htop py-httpretty r-strucchangercpp
htslib py-httpstan r-styler
http-get py-httptools r-subplex
http-load py-httpx r-summarizedexperiment
http-parser py-huggingface-hub r-suppdists
http-ping py-humanfriendly r-survey
http-post py-humanize r-survival
httpd py-hvac r-sva
httperf py-hypercorn r-svglite
httpie py-hyperframe r-sys
httping py-hyperlink r-systemfonts
httpress py-hyperopt r-tarifx
hub py-hypothesis r-taxizedb
hudi py-ibm-cloud-sdk-core r-tclust
hugo py-ibm-watson r-teachingdemos
hunspell py-ics r-tensor
hw-probe py-identify r-tensora
hwdata py-idna r-terra
hwloc py-idna-ssl r-tester
hybpiper py-illumina-utils r-testit
hybrid-lambda py-ilmbase r-testthat
hybridsim py-imageio r-tfbstools
hydra py-imageio-ffmpeg r-tfisher
hydrogen py-imagesize r-tfmpvalue
hyperfine py-imgaug r-th-data
hyperqueue py-iminuit r-threejs
hyperscan py-immutabledict r-tibble
hyphen py-immutables r-tictoc
hyphy py-importlib r-tidycensus
hypre py-importlib-metadata r-tidygraph
hypre-cmake py-importlib-resources r-tidyr
hztool py-incremental r-tidyselect
i3 py-inference-schema r-tidytree
ibm-databroker py-inheritance r-tidyverse
ibm-java py-iniconfig r-tiff
ibmisc py-iniparse r-tigris
icarus py-installer r-timedate
iceauth py-instrain r-tinytex
icedtea py-intbitset r-tmixclust
icet py-intel-openmp r-tmvnsim
ico py-intensity-normalization r-topgo
icu4c py-interface-meta r-treeio
id3lib py-intervaltree r-triebeard
idba py-invoke r-trimcluster
idl py-iocapture r-truncdist
iegenlib py-ipaddress r-truncnorm
ignite py-ipdb r-trust
igprof py-ipycanvas r-tseries
igraph py-ipyevents r-tsne
igv py-ipykernel r-ttr
igvtools py-ipympl r-tweenr
ike-scan py-ipyparallel r-txdb-hsapiens-ucsc-hg18-knowngene
ilmbase py-ipython r-txdb-hsapiens-ucsc-hg19-knowngene
ima-evm-utils py-ipython-cluster-helper r-tximport
imagemagick py-ipython-genutils r-tximportdata
imake py-ipyvtk-simple r-tzdb
imath py-ipywidgets r-ucminf
imgui py-irpf90 r-udunits2
imlib2 py-iso8601 r-units
imp py-isodate r-upsetr
impalajit-llvm py-isort r-urca
improved-rdock py-itk r-urltools
impute2 py-itsdangerous r-usethis
infernal py-jaconv r-utf8
influxdb py-jamo r-uuid
iniparser py-jaraco-classes r-uwot
inputproto py-jaraco-functools r-v8
intel py-javaproperties r-variantannotation
intel-daal py-jax r-varselrf
intel-gpu-tools py-jaxlib r-vcd
intel-gtpin py-jdatetime r-vcfr
intel-ipp py-jdcal r-vctrs
intel-llvm py-jedi r-vegan
intel-mkl py-jeepney r-vfs
intel-mpi py-jellyfish r-vgam
intel-mpi-benchmarks py-jinja2 r-vioplot
intel-oneapi-advisor py-jinja2-time r-vipor
intel-oneapi-ccl py-jmespath r-viridis
intel-oneapi-compilers py-jmp r-viridislite
intel-oneapi-compilers-classic py-joblib r-visnetwork
intel-oneapi-dal py-jplephem r-vroom
intel-oneapi-dnn py-jprops r-vsn
intel-oneapi-dpct py-jpype1 r-waldo
intel-oneapi-dpl py-jsmin r-watermelon
intel-oneapi-inspector py-json-get r-webshot
intel-oneapi-ipp py-json5 r-wgcna
intel-oneapi-ippcp py-jsondiff r-whisker
intel-oneapi-itac py-jsonpatch r-withr
intel-oneapi-mkl py-jsonpath-ng r-wk
intel-oneapi-mpi py-jsonpickle r-xde
intel-oneapi-tbb py-jsonpointer r-xfun
intel-oneapi-vpl py-jsonref r-xgboost
intel-oneapi-vtune py-jsonschema r-xlconnect
intel-parallel-studio py-junit-xml r-xlconnectjars
intel-pin py-jupyter r-xlsx
intel-tbb py-jupyter-client r-xlsxjars
intel-xed py-jupyter-console r-xmapbridge
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intltool py-jupyter-packaging r-xml2
ioapi py-jupyter-packaging11 r-xnomial
ior py-jupyter-packaging7 r-xopen
iozone py-jupyter-server r-xtable
ip py-jupyter-server-mathjax r-xts
ip2 py-jupyter-telemetry r-xvector
ipcalc py-jupyterhub r-yaimpute
iperf2 py-jupyterlab r-yaml
iperf3 py-jupyterlab-pygments r-yapsa
ipopt py-jupyterlab-server r-yaqcaffy
iproute2 py-jupyterlab-widgets r-yarn
iptraf-ng py-jupytext r-yulab-utils
iq-tree py-kaggle r-zcompositions
irep py-kaldiio r-zeallot
isaac py-keras r-zip
isaac-server py-keras-applications r-zlibbioc
isc-dhcp py-keras-preprocessing r-zoo
isescan py-keras2onnx r3d
isl py-kerberos rabbitmq
iso-codes py-keyboard racket
ispc py-keyring racon
istio py-keyrings-alt raft
itensor py-keystoneauth1 ragel
itk py-kitchen raja
itstool py-kiwisolver ramulator
itsx py-kmodes randfold
iwyu py-knack random123
jackcess py-kombu randrproto
jafka py-kornia range-v3
jags py-kosh rankstr
jali py-kubernetes rapidjson
jansi py-labours raptor2
jansi-native py-lap rasdaemon
jansson py-lark rasqal
jasper py-lark-parser ratel
jbigkit py-laspy ravel
jblob py-latexcodec raxml
jchronoss py-law raxml-ng
jdk py-lazy ray
jellyfish py-lazy-object-proxy rccl
jemalloc py-lazy-property rclone
jetty-project py-lazyarray rdc
jhpcn-df py-leather rdkit
jimtcl py-lerc rdma-core
jline3 py-lhsmdu rdp-classifier
jmol py-liac-arff rdptools
jogl py-libclang re2
jose py-libconf re2c
jpegoptim py-libensemble readfq
jq py-liblas readline
json-c py-librosa recola
json-cwx py-lifelines recola-sm
json-fortran py-lightgbm recon
json-glib py-ligo-segments recorder
jsoncpp py-line-profiler recordproto
jsonnet py-linear-operator redis
jstorm py-linecache2 reditools
jube py-lineenhancer redland
judy py-lit redland-bindings
julea py-lizard redset
julia py-llnl-sina redundans
junit4 py-llvmlite reframe
jxrlib-debian py-lmdb regcm
k8 py-lmfit relax
kadath py-lmodule relion
kafka py-localcider remhos
kahip py-locket rempi
kaiju py-lockfile rename
kakoune py-logilab-common rendercheck
kaks-calculator py-loguru renderproto
kaldi py-louie repeatmasker
kalign py-lru-dict repeatmodeler
kallisto py-lscsoft-glue repeatscout
karma py-luigi reprimand
kassiopeia py-lws resourceproto
kbd py-lxml restic
kbproto py-lz4 revbayes
kcov py-lzstring revocap-coupler
kdiff3 py-m2r revocap-refiner
kea py-macholib rgb
kealib py-machotools rhash
keepalived py-macs2 rinetd
keepassxc py-maestrowf ripgrep
kentutils py-magic riscv-gnu-toolchain
keyutils py-mailchecker rivet
kibana py-make rkt-base
kicad py-mako rkt-cext-lib
kim-api py-mapclassify rkt-compiler-lib
kinesis py-markdown rkt-dynext-lib
kineto py-markdown-include rkt-rackunit-lib
kitty py-markdown-it-py rkt-scheme-lib
kmergenie py-markdown2 rkt-testing-util-lib
kmod py-markovify rkt-zo-lib
knem py-markupsafe rlwrap
kokkos py-marshmallow rmats
kokkos-kernels py-matplotlib rmgdft
kokkos-kernels-legacy py-matplotlib-inline rmlab
kokkos-legacy py-mayavi rna-seqc
kokkos-nvcc-wrapper py-mccabe rnaquast
kraken py-md-environ rnaz
kraken2 py-mdanalysis rng-tools
krakenuniq py-mdit-py-plugins rngstreams
krb5 py-mechanize rnpletal
krims py-meldmd roary
kripke py-memory-profiler rocalution
kubernetes py-memprof rocblas
kvasir-mpl py-memray rocfft
kvtree py-mercantile rocketmq
kylin py-mergedeep rocksdb
ladot py-merlin rockstar
laghos py-meshio rocm-bandwidth-test
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landsfcutil py-metasv rocm-dbgapi
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lapackpp py-metpy rocm-device-libs
last py-mffpy rocm-gdb
lastz py-mg-rast-tools rocm-opencl
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lbann py-mistune rocminfo
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lbzip2 py-mizani rocprofiler-dev
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lcio py-mkdocs-jupyter rocsparse
lcms py-mkdocs-material rocthrust
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legion py-mlperf-logging roms
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leptonica py-mmcv rose
lerc py-mmtf-python ross
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libabigail py-more-itertools rsem
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libblastrampoline py-msrest ruby-narray
libbsd py-msrestazure ruby-rake
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libbytesize py-multidict ruby-ronn
libc py-multipledispatch ruby-rubyinline
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libcap-ng py-munch ruby-thor
libcatalyst py-murmurhash ruby-tmuxinator
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libcerf py-mx ruby-xdg
libcgroup py-mxfold2 ruby-zentest
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libcircle py-mypy rust
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libcroco py-mysqlclient saga-gis
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libffs py-ninja scotch
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libgain py-nose sdl2
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libgff py-notebook seal
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libiconv py-odc-geo sfcio
libid3tag py-olefile sga
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liblas py-opppy showfont
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libmetalink py-packaging simul
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libmicrohttpd py-palettable sina
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libpaper py-pdoc3 snappy
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libpipeline py-pep8-naming snptest
libplist py-performance soapdenovo-trans
libpmemobj-cpp py-periodictable soapdenovo2
libpng py-petastorm soci
libproxy py-petname sofa-c
libpsl py-petsc4py sollve
libpsml py-pexpect sollya
libpthread-stubs py-phonenumbers solr
libpulsar py-phonopy somatic-sniper
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libqrencode py-phylophlan sonlib
libquo py-pickle5 sortmerna
libraqm py-pickleshare sos
libraw1394 py-picmistandard sosflow
librdkafka py-picrust source-highlight
librelp py-picrust2 sowing
libristra py-pid sox
librmm py-pika sp
librom py-pil spack
librsb py-pillow spades
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librtlsdr py-pint spark
librttopo py-pip sparrow
libsakura py-pipits sparse
libsamplerate py-pispino sparsehash
libseccomp py-pkgconfig sparskit
libsecret py-pkginfo sparta
libsharp py-pkgutil-resolve-name spath
libshm py-plac spdlog
libsigcpp py-planar specfem3d-globe
libsignal-protocol-c py-planet spectra
libsigsegv py-platformdirs spectre
libslirp py-plotly spectrum-mpi
libsm py-plotnine speex
libsndfile py-pluggy speexdsp
libsodium py-ply spfft
libspatialindex py-pmw spglib
libspatialite py-pmw-patched sph2pipe
libspiro py-pockets spherepack
libsplash py-poetry spindle
libspng py-poetry-core spiner
libssh py-poetry-dynamic-versioning spiral-package-fftx
libssh2 py-poetry-plugin-export spiral-package-hcol
libsvm py-pomegranate spiral-package-mpi
libszip py-pooch spiral-package-simt
libtar py-portalocker spiral-software
libtasn1 py-portend spla
libtermkey py-poster spm
libthai py-pot spot
libtheora py-pox sprng
libtiff py-poyo sqlcipher
libtirpc py-ppft sqlite
libtlx py-pre-commit sqlite-jdbc
libtomlc99 py-preshed sqlitebrowser
libtommath py-pretrainedmodels sqoop
libtool py-prettytable squashfs
libtorrent py-priority squashfs-mount
libtree py-profilehooks squashfuse
libuecc py-proglog squid
libunistring py-progress sra-tools
libunwind py-progressbar2 sratoolkit
libusb py-projectq srilm
libusbmuxd py-prometheus-client sse2neon
libuser py-promise sshfs
libuuid py-prompt-toolkit sshpass
libuv py-protobuf ssht
libuv-julia py-prov ssmtp
libvdwxc py-prwlock sspace-longread
libverto py-pspamm sspace-standard
libvips py-psutil sst-core
libvorbis py-psyclone sst-dumpi
libvori py-psycopg2 sst-elements
libvpx py-ptyprocess sst-macro
libvterm py-pudb sst-transports
libwebp py-pulp stacks
libwebsockets py-pure-eval staden-io-lib
libwhich py-pure-sasl star
libwindowswm py-py star-ccm-plus
libx11 py-py-cpuinfo starlight
libxau py-py-spy starpu
libxaw py-py2bit startup-notification
libxaw3d py-py2cairo stat
libxc py-py2neo stata
libxcb py-py4j static-analysis-suite
libxcomposite py-py6s stc
libxcrypt py-pyaestro steps
libxcursor py-pyamg stinger
libxdamage py-pyaml storm
libxdmcp py-pyani stow
libxevie py-pyarrow strace
libxext py-pyasn1 stream
libxfixes py-pyasn1-modules strelka
libxfont py-pyautogui stress
libxfont2 py-pybedtools stress-ng
libxfontcache py-pybids string-view-lite
libxft py-pybigwig stringtie
libxi py-pybind11 stripack
libxinerama py-pybind11-stubgen structure
libxkbcommon py-pybobyqa strumpack
libxkbfile py-pybrain su2
libxkbui py-pybtex sublime-text
libxml2 py-pybtex-docutils subread
libxmu py-pycairo subversion
libxp py-pycares suite-sparse
libxpm py-pycbc sumaclust
libxpresent py-pychecker sumo
libxprintapputil py-pycifrw sundials
libxprintutil py-pycmd suntans
libxrandr py-pycocotools superchic
libxrender py-pycodestyle superlu
libxres py-pycompadre superlu-dist
libxscrnsaver py-pycortex superlu-mt
libxshmfence py-pycosat supernova
libxslt py-pycparser survey
libxsmm py-pycrypto sw4lite
libxstream py-pyct swan
libxt py-pycuda swap-assembler
libxtrap py-pycurl swarm
libxtst py-pydantic swfft
libxv py-pydap swftools
libxvmc py-pydatalog swiftsim
libxxf86dga py-pydeprecate swig
libxxf86misc py-pydeps swipl
libxxf86vm py-pydicom symengine
libyaml py-pydispatcher symlinks
libyogrt py-pydmd sympol
libzip py-pydocstyle sys-sage
libzmq py-pydoe sysbench
liggghts py-pydoe2 syscalc
lighttpd py-pydot sysfsutils
ligra py-pydot2 sysget
likwid py-pydotplus sysstat
linkphase3 py-pydv systemc
linktest py-pyeda systemtap
linsys-v py-pyelftools sz
linux-headers py-pyem tabix
linux-pam py-pyepsg tajo
lis py-pyface talass
listres py-pyfaidx talloc
lizard py-pyfasta tamaas
lksctp-tools py-pyfftw tangram
llvm py-pyfiglet tantan
llvm-amdgpu py-pyfits tar
llvm-doe py-pyflakes targetp
llvm-openmp py-pyfr task
llvm-openmp-ompt py-pygdal taskd
lm-sensors py-pygdbmi taskflow
lmbench py-pygelf tasmanian
lmdb py-pygeos tassel
lmod py-pygetwindow tau
lndir py-pygit2 tauola
lodepng py-pygithub tbl2asn
log4c py-pyglet tcl
log4cplus py-pygments tcl-itcl
log4cpp py-pygments-pytest tcl-tcllib
log4cxx py-pygobject tcl-tclxml
logrotate py-pygps tclap
logstash py-pygpu tcoffee
loki py-pygraphviz tcpdump
looptools py-pygresql tcptrace
lordec py-pygtk tcsh
lorene py-pygtrie tdengine
lp-solve py-pyh5md tealeaf
lrslib py-pyheadtail teckit
lrzip py-pyinstrument tecplot
lsf py-pyinstrument-cext telegraf
lshw py-pyjnius tempestremap
lsof py-pyjwt templight
lsscsi py-pyke templight-tools
ltp py-pykml tengine
ltr-retriever py-pykokkos-base tensorflow-serving-client
ltrace py-pykwalify tensorpipe
lua py-pylab-sdk termcap
lua-bit32 py-pylev tesseract
lua-bitlib py-pyliblzma testdfsio
lua-ffi py-pylikwid testu01
lua-lpeg py-pylint tetgen
lua-luafilesystem py-pylops tethex
lua-luajit py-pymatgen texinfo
lua-luajit-openresty py-pymc3 texlive
lua-luaposix py-pymdown-extensions texstudio
lua-mpack py-pymeeus textparser
lua-sol2 py-pyminifier tfel
lucene py-pymol the-platinum-searcher
luit py-pymongo the-silver-searcher
lulesh py-pymoo thepeg
lumpy-sv py-pymorph thornado-mini
lustre py-pympler thrift
lvarray py-pymsgbox thrust
lvm2 py-pymumps tidy-html5
lwgrp py-pymysql tig
lwm2 py-pynacl time
lwtnn py-pynio timedatex
lxc py-pynisher timemory
lynx py-pynn tini
lz4 py-pynndescent tinker
lzma py-pynvim tinygltf
lzo py-pynvml tinyobjloader
lzop py-pyodbc tinyxml
m4 py-pyomo tinyxml2
macfuse py-pyopencl tioga
macsio py-pyopenssl tippecanoe
mad-numdiff py-pypar tiptop
madgraph5amc py-pyparsing tix
madx py-pypdf2 tixi
mafft py-pypeflow tk
magics py-pypeg2 tkrzw
magma py-pyperclip tldd
mahout py-pyperf tmalign
makedepend py-pypinyin tmhmm
maker py-pyprecice tmux
mallocmc py-pyprof2html tomcat
maloc py-pyproj toml-f
man-db py-pyproject-metadata toml11
manta py-pypulse tophat
mapnik py-pyqi torque
mapserver py-pyqt-builder totalview
mapsplice2 py-pyqt4 tower-agent
maq py-pyqt5 tower-cli
margo py-pyqt5-sip tpm2-tss
mariadb py-pyquaternion tppred
mariadb-c-client py-pyrad tracer
mark py-pyrect tracy
masa py-pyrevolve tracy-client
mash py-pyrfr tramonto
masurca py-pyro-api transabyss
mathematica py-pyro-ppl transdecoder
matio py-pyro4 transposome
matlab py-pyrosar transrate
maven py-pyrr transset
maverick py-pyrsistent trapproto
mawk py-pysam tree
mbdyn py-pyscaf tree-sitter
mbedtls py-pyscf treelite
mc py-pyscipopt treesub
mcl py-pyscreeze trexio
mcpp py-pyserial trf
mctc-lib py-pyshp triangle
mcutils py-pyside trident
mdsplus py-pyside2 trilinos
mdtest py-pysimdjson trilinos-catalyst-ioss-adapter
med py-pysmartdl trimal
meep py-pysocks trimgalore
mefit py-pysolar trimmomatic
megadock py-pyspark trinity
megahit py-pyspellchecker trinotate
melissa py-pysqlite trnascan-se
memaxes py-pysqlite3 truchas
memcached py-pystac tskit
meme py-pystan tulip
memkind py-pysurfer turbine
memsurfer py-pytailf turbomole
memtester py-pytaridx turnserver
meraculous py-pytecplot tut
mercurial py-pytesseract twm
mercury py-pytest tycho2
mesa py-pytest-arraydiff typhon
mesa-demos py-pytest-asyncio typhonio
mesa-glu py-pytest-benchmark uchardet
mesa18 py-pytest-cache ucx
meshkit py-pytest-check-links udunits
meshtool py-pytest-cov ufo-core
meson py-pytest-cpp ufo-filters
mesquite py-pytest-doctestplus ufs-utils
metabat py-pytest-fail-slow ufs-weather-model
metaeuk py-pytest-flake8 uftrace
metall py-pytest-flakes umap
metaphysicl py-pytest-forked umesimd
metis py-pytest-html umoci
metkit py-pytest-httpbin umpire
mfem py-pytest-isort unblur
mg py-pytest-metadata uncrustify
mgcfd-op2 py-pytest-mock unibilium
mgis py-pytest-mypy unifdef
microbiomeutil py-pytest-openfiles unifyfs
microsocks py-pytest-parallel unigen
migraphx py-pytest-pep8 unison
migrate py-pytest-qt units
mii py-pytest-random-order unittest-cpp
millepede py-pytest-runner universal-ctags
mimalloc py-pytest-timeout unixodbc
minc-toolkit py-pytest-xdist unqlite
minced py-python-benedict unrar
mindthegap py-python-bioformats unuran
miniaero py-python-box unzip
miniamr py-python-certifi-win32 upcxx
miniapp-ascent py-python-constraint upp
miniasm py-python-crfsuite uqtk
miniconda2 py-python-daemon uriparser
miniconda3 py-python-dateutil usbutils
minife py-python-docs-theme usearch
miniforge3 py-python-dotenv userspace-rcu
minigan py-python-editor utf8cpp
minighost py-python-engineio utf8proc
minigmg py-python-fmask util-linux
minimap2 py-python-fsutil util-linux-uuid
minimd py-python-gitlab util-macros
minio py-python-igraph uvw
miniqmc py-python-javabridge vacuumms
minisign py-python-jenkins valgrind
minismac2d py-python-json-logger vampirtrace
minitri py-python-keystoneclient vapor
minivite py-python-ldap vardictjava
minixyce py-python-levenshtein variorum
minizip py-python-logstash varnish-cache
minuit py-python-louvain varscan
miopen-hip py-python-lzo vasp
miopen-opencl py-python-magic vbfnlo
miopen-tensile py-python-mapnik vc
miopengemm py-python-markdown-math vcftools
mira py-python-meep vcsh
miranda py-python-memcached vdt
mirdeep2 py-python-oauth2 veccore
mitofates py-python-picard vecgeom
mitos py-python-rapidjson veclibfort
mivisionx py-python-slugify vecmem
mixcr py-python-socketio vectorclass-version2
mkfontdir py-python-subunit vegas2
mkfontscale py-python-swiftclient veloc
mlhka py-python-utils velvet
mlirmiopen py-python-xlib velvetoptimiser
mlocate py-python-xmp-toolkit verilator
mlperf-deepcam py-python3-xlib verrou
mmg py-pythonqwt vesta
mmv py-pythonsollya vgm
moab py-pythran videoproto
mochi-margo py-pytimeparse viennarna
mochi-thallium py-pytoml viewres
model-traits py-pytools vifi
modeltest-ng py-pytorch-gradual-warmup-lr vigra
modern-wheel py-pytorch-lightning vim
modylas py-pytorch-sphinx-theme virtest
mofem-cephas py-pyts virtualgl
mofem-fracture-module py-pytweening virtuoso
mofem-minimal-surface-equation py-pytz visit
mofem-users-modules py-pyudev visit-cgns
mokutil py-pyugrid visit-ffp
molcas py-pyupgrade visit-mfem
molden py-pyusb visit-silo
mongo-c-driver py-pyutilib visit-unv
mongo-cxx-driver py-pyvcf vite
mongodb-async-driver py-pyvista vizglow
mono py-pyvistaqt vmatch
montage py-pyvolve vmc
moosefs py-pywavelets vmd
moreutils py-pywcs volk
mosh py-pyworld voropp
mosquitto py-pyyaml votca
mothur py-pyyaml-env-tag votca-csg
motif py-pyzmq votca-csg-tutorials
motioncor2 py-qiskit-aer votca-csgapps
mount-point-attributes py-qiskit-nature votca-ctp
mozjs py-qiskit-terra votca-tools
mpark-variant py-qmtest votca-xtp
mpas-model py-qpth vpfft
mpc py-qrcode vpic
mpdecimal py-qsymm vsearch
mpe2 py-qtawesome vsftpd
mpest py-qtconsole vt
mpfi py-qtpy vtable-dumper
mpfr py-quantities vtk
mpi-bash py-quart vtk-h
mpibind py-quast vtk-m
mpich py-quaternionic vvtest
mpifileutils py-queryablelist w3emc
mpilander py-questionary w3m
mpileaks py-radiant-mlhub w3nco
mpip py-radical-entk wannier90
mpir py-radical-gtod warpx
mpitrampoline py-radical-pilot watch
mpiwrapper py-radical-saga wayland
mpix-launch-swift py-radical-utils wayland-protocols
mpl py-ranger-fm wcs
mpt py-rapidfuzz wcslib
mptensor py-rarfile webbench
mrbayes py-rasterio weechat
mrbench py-ratelim weighttp
mrchem py-ratelimiter wget
mrcpp py-raven wgrib2
mrnet py-ray wgsim
mrtrix3 py-rbtools which
mscgen py-rdflib whip
msgpack-c py-rdt whizard
mshadow py-readme-renderer wi4mpi
msmc py-recommonmark winbison
msmc2 py-redis windowswmproto
mstk py-regex wiredtiger
mt-metis py-reindent wireshark
mujoco py-reportlab wonton
multitail py-repoze-lru wordnet
multitime py-reproject workrave
multiverso py-requests wps
mumax py-requests-ftp wrf
mummer py-requests-futures wrf-io
mummer4 py-requests-mock wrk
mumps py-requests-ntlm wsmancli
munge py-requests-oauthlib wt
muparser py-requests-toolbelt wtdbg2
muparserx py-requests-unixsocket wxparaver
muscle py-resampy wxpropgrid
muse py-responses wxwidgets
music py-restview x11perf
musl py-resultsfile x264
must py-retry xabclib
muster py-retry-decorator xalan-c
mutationpp py-retrying xapian-core
mvapich2 py-retworkx xauth
mvapich2-gdr py-rfc3986 xbacklight
mvapich2x py-rich xbiff
mxm py-rich-click xbitmaps
mxml py-rios xbraid
mxnet py-rioxarray xcalc
mysql py-rise xcb-demo
mysqlpp py-river xcb-proto
n2p2 py-rmm xcb-util
nacos py-rnacocktail xcb-util-cursor
nag py-rnc2rng xcb-util-errors
nalu py-robotframework xcb-util-image
nalu-wind py-rope xcb-util-keysyms
namd py-rosdep xcb-util-renderutil
nano py-rosdistro xcb-util-wm
nanoflann py-rosinstall xcb-util-xrm
nanomsg py-rosinstall-generator xcfun
nanopb py-rospkg xclip
nasm py-rply xclipboard
nauty py-rpy2 xclock
nbdkit py-rq xcmiscproto
ncbi-magicblast py-rsa xcmsdb
ncbi-rmblastn py-rsatoolbox xcompmgr
ncbi-toolkit py-rseqc xconsole
ncbi-vdb py-rst2pdf xcursor-themes
nccl py-rtree xcursorgen
nccl-tests py-ruamel-ordereddict xdbedizzy
nccmp py-ruamel-yaml xdelta
ncdu py-ruamel-yaml-clib xditview
ncftp py-rx xdm
ncio py-s3cmd xdmf3
ncl py-s3fs xdotool
nco py-s3transfer xdpyinfo
ncompress py-sacremoses xdriinfo
ncurses py-saga-python xedit
ncview py-salib xerces-c
ndiff py-sanic xeus
neartree py-scandir xev
nek5000 py-schema xextproto
nekbone py-scientificpython xeyes
nekcem py-scikit-build xf86bigfontproto
neko py-scikit-fmm xf86dga
nekrs py-scikit-fuzzy xf86dgaproto
nektar py-scikit-image xf86driproto
nektools py-scikit-learn xf86miscproto
nemsio py-scikit-learn-extra xf86rushproto
nemsiogfs py-scikit-optimize xf86vidmodeproto
neo4j py-scinum xfd
neovim py-scipy xfindproxy
nest py-scooby xfontsel
net-snmp py-scoop xforms
netcdf-c py-scp xfs
netcdf-cxx py-scs xfsdump
netcdf-cxx4 py-sdmetrics xfsinfo
netcdf-fortran py-sdv xfsprogs
netdata py-seaborn xfwp
netgauge py-secretstorage xgamma
netgen py-segmentation-models-pytorch xgboost
netkit-ftp py-selectors34 xgc
netlib-lapack py-selenium xhmm
netlib-scalapack py-semantic-version xhost
netlib-xblas py-semver xineramaproto
netpbm py-send2trash xinit
netperf py-sentencepiece xinput
nettle py-sentry-sdk xios
neuron py-seqeval xkbcomp
newt py-seriate xkbdata
nextflow py-serpent xkbevd
nfft py-session-info xkbprint
nfs-ganesha py-setproctitle xkbutils
nfs-utils py-setupmeta xkeyboard-config
nghttp2 py-setuptools xkill
nginx py-setuptools-cpp xlc
ngmerge py-setuptools-git xlf
ngmlr py-setuptools-rust xload
ngspice py-setuptools-scm xlogo
nicstat py-setuptools-scm-git-archive xlsatoms
nim py-sfepy xlsclients
ninja py-sgp4 xlsfonts
ninja-fortran py-sh xmag
nix py-shapely xman
njet py-shellingham xmessage
nlcglib py-shiboken xmh
nlohmann-json py-shiboken2 xmlf90
nlohmann-json-schema-validator py-shortuuid xmlrpc-c
nlopt py-shroud xmlto
nmap py-shtab xmodmap
nn-c py-sierrapy xmore
nnpack py-simpleeval xnnpack
nnvm py-simplegeneric xorg-cf-files
node-js py-simplejson xorg-docs
notmuch py-simplekml xorg-gtest
npb py-singledispatch xorg-server
npm py-sip xorg-sgml-doctools
npth py-six xphelloworld
nrm py-skl2onnx xplor-nih
ns-3-dev py-slepc4py xplsprinters
nseg py-slurm-pipeline xpmem
nsimd py-smac xpr
nspr py-smart-open xprehashprinterlist
nss py-smartypants xprop
ntirpc py-smmap xproperty
ntl py-snappy xproto
ntpoly py-sncosmo xproxymanagementprotocol
numactl py-sniffio xqilla
numamma py-snowballstemmer xrandr
numap py-snuggs xrdb
numdiff py-sobol-seq xrdcl-record
nut py-sonlib xrefresh
nvdimmsim py-sortedcollections xrootd
nvhpc py-sortedcontainers xrx
nvptx-tools py-soundfile xsbench
nvshmem py-soupsieve xscope
nvtop py-spacy xsd
nwchem py-spacy-models-en-core-web-sm xsdk
nyancat py-spacy-models-en-vectors-web-lg xsdk-examples
ocaml py-sparse xset
ocamlbuild py-spatialist xsetmode
occa py-spatialite xsetpointer
oce py-spdlog xsetroot
oci-systemd-hook py-spectra xsimd
ocl-icd py-spectral xsm
oclgrind py-speech-recognition xstdcmap
oclint py-spefile xtensor
oclock py-spgl1 xtensor-blas
octa py-spglib xtensor-python
octave py-spherical xterm
octave-arduino py-sphinx xtl
octave-control py-sphinx-argparse xtrans
octave-gsl py-sphinx-autodoc-typehints xtrap
octave-instrctl py-sphinx-bootstrap-theme xts
octave-io py-sphinx-copybutton xvidtune
octave-optim py-sphinx-design xvinfo
octave-quaternion py-sphinx-gallery xwd
octave-signal py-sphinx-multiversion xwidgets
octave-splines py-sphinx-rtd-theme xwininfo
octave-statistics py-sphinx-tabs xwud
octave-struct py-sphinxautomodapi xxd-standalone
octave-symbolic py-sphinxcontrib-applehelp xxhash
octopus py-sphinxcontrib-bibtex xyce
odc py-sphinxcontrib-devhelp xz
of-catalyst py-sphinxcontrib-htmlhelp yajl
of-precice py-sphinxcontrib-issuetracker yaksa
ome-common-cpp py-sphinxcontrib-jsmath yambo
ome-files-cpp py-sphinxcontrib-mermaid yaml-cpp
ome-model py-sphinxcontrib-napoleon yara
omega-h py-sphinxcontrib-programoutput yarn
omnitrace py-sphinxcontrib-qthelp yasm
ompss py-sphinxcontrib-serializinghtml ycsb
ompt-openmp py-sphinxcontrib-trio yoda
oneapi-igc py-sphinxcontrib-websupport yorick
oneapi-level-zero py-sphobjinv z-checker
onednn py-spyder z3
oniguruma py-spykeutils zabbix
onnx py-sqlalchemy zfp
ont-albacore py-sqlalchemy-stubs zfs
ont-guppy py-sqlalchemy-utils zig
oommf py-sqlparse zip
op2-dsl py-srsly zipkin
opa-psm2 py-sshtunnel zlib
opam py-stack-data zlib-ng
opari2 py-statsmodels zoltan
open-iscsi py-stdlib-list zookeeper
open-isns py-stestr zookeeper-benchmark
open3d py-stevedore zopfli
openal-soft py-stomp-py zpares
openbabel py-stopit zsh
openblas py-storm zstd
opencarp py-stratify zstr
opencascade py-stsci-distutils zziplib
opencl-c-headers py-submitit None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

7zip

Homepage:
Spack package:
Versions:
21.07
Description:
7-Zip is a file archiver for Windows

abacus

Homepage:
Spack package:
Versions:
develop, 2.2.3, 2.2.2, 2.2.1, 2.2.0
Build Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Link Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Run Dependencies:
mpi
Description:
ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.6.1, 9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20220623.0, 20211102.0, 20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Build Dependencies:
gnuconfig
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 20.0.0, 19.7.0, 19.6.0, 19.5.0, 19.4.0, 19.3.0, 19.2.0, 19.1.0, 19.0.0, 18.0.0, 17.1.0, 17.0.0, 16.0.0, 15.1.0, 15.0.1, 15.0.0, 14.1.0, 14.0.0, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, acts-dd4hep, autodiff, boost, dd4hep, edm4hep, eigen, geant4, gperftools, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnx-runtime, py-pybind11, py-pytest, root, sycl, vecmem
Link Dependencies:
cuda, acts-dd4hep, autodiff, boost, dd4hep, edm4hep, eigen, geant4, gperftools, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnx-runtime, py-pybind11, py-pytest, root, sycl, vecmem
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

acts-dd4hep

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
cmake, dd4hep
Link Dependencies:
dd4hep
Description:
Glue library to connect Acts to DD4hep

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.2, 0.2.1, 0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.8.3, 2.8.2, 2.8.1, 2.8.0, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cuda, cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
cuda, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
gnuconfig, bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
gnuconfig, automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gnuconfig, gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Build Dependencies:
gnuconfig
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agile

Homepage:
Spack package:
Versions:
1.5.1
Build Dependencies:
gnuconfig, hepmc, boost
Link Dependencies:
hepmc, boost
Description:
AGILe is A Generator Interface Library (& executable), i.e. a uniform object oriented C++ interface for a variety of Fortran-based Monte Carlo event generators..

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
gnuconfig
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.7.2, 2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, boost
Link Dependencies:
cuda, cmake, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alpgen

Homepage:
Spack package:
Versions:
2.1.4
Build Dependencies:
cmake
Description:
A collection of codes for the generation of multi-parton processes in hadronic collisions.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, 1.0.9, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Build Dependencies:
gnuconfig
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0-lbann, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, parallel-netcdf, tcsh, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, parallel-netcdf, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amd-aocl

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0, 2.2
Build Dependencies:
amdblis, amdfftw, amdlibflame, amdlibm, amdscalapack, aocl-sparse
Link Dependencies:
amdblis, amdfftw, amdlibflame, amdlibm, amdscalapack, aocl-sparse
Description:
AMD Optimizing CPU Libraries (AOCL) - AOCL is a set of numerical libraries tuned specifically for AMD EPYC processor family. They have a simple interface to take advantage of the latest hardware innovations. The tuned implementations of industry standard math libraries enable fast development of scientific and high performance computing projects

amdblis

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, blas, python
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0, 2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.2.0, 0.1.0
Build Dependencies:
gnuconfig, numactl, cuda, hip, oneapi-level-zero, hwloc, ocl-icd, m4, autoconf, automake, libtool, pkgconf, git
Link Dependencies:
numactl, cuda, hip, oneapi-level-zero, hwloc, ocl-icd
Description:
AML is a memory management library designed to ease the use of complex memory topologies and complex data layout optimizations for high- performance computing applications.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20220525, 20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

ampt

Homepage:
Spack package:
Versions:
2.26-t9b_atlas, 2.26-t9
Description:
A Multi-Phase Transport (AMPT) model is a Monte Carlo transport model for nuclear collisions at relativistic energies.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, hypre, masa, ascent, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, hypre, masa, ascent, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 22.09, 22.08, 22.07, 22.06, 22.05, 22.04, 22.03, 22.02, 22.01, 21.12, 21.11, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand, rocprim, intel-oneapi-mkl
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc, intel-oneapi-mkl
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrfinder

Homepage:
Spack package:
Versions:
3.10.30, 3.10.24
Build Dependencies:
blast-plus, hmmer, curl
Link Dependencies:
blast-plus, hmmer, curl
Description:
NCBI AMRFinderPlus: This software and the accompanying database identify acquired antimicrobial resistance genes in bacterial protein and/or assembled nucleotide sequences as well as known resistance-associated point mutations for several taxa. With AMRFinderPlus we added select members of additional classes of genes such as virulence factors, biocide, heat, acid, and metal resistance genes.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2022.05, 2021.11, 2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.14, 0.10
Build Dependencies:
gnuconfig, pkgconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.935, 0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
gnuconfig, python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
20220205, 2.4.0, 2.3.5, 2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
3.2.0, 3.1.0, 3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : https://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.2, 3.1, 3.0, 2.2
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, gl, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
gl, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.4, 0.0.3, 0.0.2, 0.0.1
Build Dependencies:
cmake, mpi, llvm-openmp
Link Dependencies:
mpi, llvm-openmp
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
3.0.2, 2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Link Dependencies:
zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
gnuconfig, swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apktool

Homepage:
Spack package:
Versions:
2.6.1, 2.6.0
Build Dependencies:
java
Run Dependencies:
java
Description:
A tool for reverse engineering 3rd party, closed, binary Android apps.

apple-gl

Homepage:
Spack package:
Versions:
4.1.0
Description:
Shim package for the core OpenGL library from Apple

apple-glu

Homepage:
    No homepage
Spack package:
Versions:
1.3.0
Description:
Shim package for Apple implementation of OpenGL Utility Libray (GLU)

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apptainer

Homepage:
Spack package:
Versions:
main, 1.0.2
Build Dependencies:
pkgconfig, go, uuid, libgpg-error, libseccomp, git, cryptsetup
Link Dependencies:
go, uuid, libgpg-error, libseccomp, git
Run Dependencies:
squashfs, shadow, cryptsetup
Description:
Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. Needs post-install chmod/chown steps to enable full functionality. See package definition or `spack-build- out.txt` build log for details, e.g.:: tail -15 $(spack location -i apptainer)/.spack/spack-build-out.txt

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Build Dependencies:
gnuconfig
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.7, 0.6, 0.5.2, 0.5
Build Dependencies:
cuda, cmake, fmt, nlohmann-json, random123, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, fmt, nlohmann-json, random123, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.2, 1.1, 1.0, 0.9-beta
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, rocthrust, kokkos, trilinos
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, rocthrust, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Build Dependencies:
gnuconfig
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Build Dependencies:
gnuconfig
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.36.0, 1.35.0, 1.34.0
Build Dependencies:
gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
22.0.1
Build Dependencies:
ncurses
Link Dependencies:
ncurses
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
22.0.4, 22.0.3, 22.0.2, 22.0.1, 22.0, 21.1.3, 21.1.2, 21.1.1, 21.1, 21.0.3, 21.0.2, 21.0.1, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

armpl-gcc

Homepage:
Spack package:
Versions:
22.0.2_gcc-11.2, 22.0.2_gcc-10.2, 22.0.2_gcc-9.3, 22.0.2_gcc-8.2, 22.0.2_gcc-7.5, 22.0.1_gcc-11.2, 22.0.1_gcc-10.2, 22.0.1_gcc-9.3, 22.0.1_gcc-8.2, 22.0.1_gcc-7.5
Description:
Arm Performance Libraries provides optimized standard core math libraries for high-performance computing applications on Arm processors.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.8.1, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
9.0.0, 8.0.0, 7.0.0, 4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, llvm, lz4, ninja, openssl, orc, protobuf, py-numpy, python, rapidjson, re2, snappy, thrift, utf8proc, xsimd, zlib, zstd
Link Dependencies:
cuda, boost, flatbuffers, lz4, openssl, orc, protobuf, py-numpy, python, rapidjson, re2, snappy, thrift, utf8proc, xsimd, zlib, zstd
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python, autoconf, automake, libtool
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
Build Dependencies:
gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.21.0, 1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2, 1.18.1, 1.18.0, 1.17.0, 1.16.1, 1.16.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Build Dependencies:
gnuconfig
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.2.4, 5.2.3, 5.2.2, 5.2.1, 5.1.4, 5.1.3, 5.0.1, 4.0.1
Build Dependencies:
cmake, pkgconfig, zlib
Link Dependencies:
zlib
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.7.1, 5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
5.2.3, 5.2.1, 5.2.0, 5.1.3, 5.1.0, 5.0.2, 5.0.0, 4.5.2, 4.5.0, 4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, rsync
Link Dependencies:
rsync, comgr, hsa-rocr-dev, elf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.2.0.1, 4.2.0.0, 4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
gnuconfig, lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Build Dependencies:
gnuconfig
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59
Build Dependencies:
gnuconfig, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2022.02.11, 2019.01.06
Build Dependencies:
gnuconfig
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodiff

Homepage:
Spack package:
Versions:
0.6.4, 0.5.13
Build Dependencies:
cmake, eigen, py-pybind11
Link Dependencies:
eigen
Run Dependencies:
py-pybind11
Description:
autodiff is automatic differentiation made easier for C++.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
gnuconfig, pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.5, 1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
gnuconfig, autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.7, 2.11.6, 2.11.5, 2.11.4, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-pip, py-wheel, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

aws-sdk-cpp

Homepage:
Spack package:
Versions:
1.9.247
Build Dependencies:
cmake, zlib, curl
Link Dependencies:
zlib, curl
Description:
AWS SDK for C++. The AWS SDK for C++ provides a modern C++ (version C++ 11 or later) interface for Amazon Web Services (AWS). It is meant to be performant and fully functioning with low- and high-level SDKs, while minimizing dependencies and providing platform portability (Windows, OSX, Linux, and mobile).

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.17.10, 2.16.1
Build Dependencies:
gnuconfig, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.7.1, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree, zlib
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, lua, scr, kvtree, dtcmp, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, lua, scr, kvtree, dtcmp, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.1.0, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
gnuconfig, glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

bacio

Homepage:
Spack package:
Versions:
2.5.0, 2.4.1
Build Dependencies:
cmake
Description:
The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.2, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake, jsoncpp
Link Dependencies:
zlib, jsoncpp
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.15, 1.0.13
Build Dependencies:
zlib, git
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gnuconfig, gmp, ntl, llvm, libyaml
Link Dependencies:
gmp, ntl, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.4, 4.3
Build Dependencies:
gnuconfig, ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
gnuconfig, automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.21.0, 0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batchedblas

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
blas
Link Dependencies:
blas
Description:
Batched BLAS is one of the new approaches for a task-based BLAS invocation, and it is defined as a new interface that allows users to execute multiple independent BLAS operations as a single subroutine call

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

baurmc

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig
Description:
Baur's Monte Carlo package for simulating W+ gamma production at hadron colliders provides full electroweak calculation upto O(alpha) and contains higher order QCD corrections as well.

bazel

Homepage:
Spack package:
Versions:
5.2.0, 5.1.1, 5.1.0, 5.0.0, 4.2.2, 4.2.1, 4.2.0, 4.1.0, 4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.0, 0.1.4, 0.1.1
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
gnuconfig, ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.14, 1.13, 1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gnuconfig, gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdsim

Homepage:
Spack package:
Versions:
develop, 1.6.0
Build Dependencies:
cmake, geant4, root, clhep, flex, bison
Link Dependencies:
cmake, geant4, root, clhep, flex, bison
Description:
Beam Delivery Simulation (BDSIM) is a C++ program that utilises the Geant4 toolkit to simulate both the transport of particles in an accelerator and their interaction with the accelerator material

bdw-gc

Homepage:
Spack package:
Versions:
8.2.2, 8.0.6, 8.0.0, 7.6.0, 7.4.4
Build Dependencies:
gnuconfig, libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.4, 5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
3.0.19, 3.0.18, 3.0.0, 2.2.0, 2.0.4
Build Dependencies:
cmake, fmt, grpc, nlohmann-json, spdlog, python
Link Dependencies:
fmt, grpc, nlohmann-json, spdlog
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
main, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Build Dependencies:
gnuconfig
Description:
Oracle Berkeley DB

berkeleygw

Homepage:
Spack package:
Versions:
3.0.1, 3.0, 2.1
Build Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py, fftw, amdfftw, openblas, amdblis
Link Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, fftw, amdfftw, openblas, amdblis
Run Dependencies:
python, py-numpy, py-setuptools, py-h5py
Test Dependencies:
perl
Description:
BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
gnuconfig, flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigdft-atlab

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3
Build Dependencies:
gnuconfig, mpi, openbabel, bigdft-futile
Link Dependencies:
mpi, openbabel, bigdft-futile
Description:
BigDFT-atlab: library for ATomic related operations.

bigdft-chess

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-CheSS: A module for performing Fermi Operator Expansions via Chebyshev Polynomials.

bigdft-core

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Link Dependencies:
cuda, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Run Dependencies:
python
Description:
BigDFT-core: the core components of BigDFT, an electronic structure calculation based on Daubechies wavelets.

bigdft-futile

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, libyaml, py-pyyaml, mpi
Link Dependencies:
cuda, blas, lapack, libyaml, py-pyyaml, mpi
Run Dependencies:
python
Description:
BigDFT-futile: a library handling most common FORTRAN low-level operations, like memory managment, profiling routines, I/O operations. It also supports yaml output and parsing for fortran programs. It also provides wrappers routines to MPI and linear algebra operations. This library is intensively used in BigDFT packages.

bigdft-libabinit

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, mpi, libxc, bigdft-futile
Link Dependencies:
mpi, libxc, bigdft-futile
Run Dependencies:
python
Description:
BigDFT-libABINIT: this is a subsection of files coming from ABINIT software package, to which BigDFT has been coupled since the early days. It handles different parts like symmetries, ewald corrections, PAW routines, density and potential mixing routines and some MD minimizers.

bigdft-psolver

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-Psolver: a flexible real-space Poisson Solver based on Interpolating Scaling Functions. It constitutes a fundamental building block of BigDFT code, and it can also be used separately and linked to other codes.

bigdft-spred

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Link Dependencies:
blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Run Dependencies:
python
Description:
BigDFT-spred: a library for structure prediction tools, that is compiled on top of BigDFT routines.

bigdft-suite

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Link Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Run Dependencies:
python
Description:
BigDFT-suite: the complete suite of BigDFT for electronic structure calculation based on Daubechies wavelets.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
gnuconfig, pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.38, 2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
gnuconfig, zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
gnuconfig, boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
gnuconfig, diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
gnuconfig, glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blackhat

Homepage:
Spack package:
Versions:
0.9.9
Build Dependencies:
gnuconfig, qd, python
Link Dependencies:
qd, python
Run Dependencies:
python
Description:
Blackhat MC generator

blaspp

Homepage:
Spack package:
Versions:
master, 2022.05.00, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
gnuconfig, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
37, 35
Build Dependencies:
libpng, libuuid, mysql-client
Link Dependencies:
libpng, libuuid, mysql-client
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas, lapack, boost, hpx
Link Dependencies:
blas, lapack, boost, hpx
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
gnuconfig, python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Build Dependencies:
gnuconfig
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.5.1, 0.5.0, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20220330, 20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main, 2.8.1
Build Dependencies:
gnuconfig, autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, py-virtualenv, py-pip, py-wheel, zlib, libsigsegv
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib, libsigsegv
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Build Dependencies:
gnuconfig
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.79.0, 1.78.0, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.19.1, 2.19.0, 2.18.2, 2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-popgen

Homepage:
Spack package:
Versions:
2.4.1
Build Dependencies:
cmake, bpp-seq
Link Dependencies:
bpp-seq
Description:
The Bio++ Population Genetics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
2.7
Run Dependencies:
python, kraken2
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bricks

Homepage:
Spack package:
Versions:
r0.1
Build Dependencies:
cmake, autoconf, automake, libtool, opencl-clhpp, cuda, mpi
Link Dependencies:
opencl-clhpp, cuda, mpi
Description:
Bricks is a data layout and code generation framework, enabling performance-portable stencil computations across a multitude of architectures.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost, ncurses
Link Dependencies:
boost, ncurses
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brunsli

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake
Description:
Brunsli is a lossless JPEG repacking library.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.0, 0.4.1, 0.4.0, 0.3.3, 0.3.1
Build Dependencies:
gnuconfig, pkgconfig, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Build Dependencies:
gnuconfig
Description:
A Binary Decision Diagram library.

bueno

Homepage:
Spack package:
Versions:
master
Build Dependencies:
python, py-pip, py-wheel, py-pyyaml, py-lark, py-pika, py-setuptools
Run Dependencies:
python, py-pyyaml, py-lark, py-pika
Description:
Bueno: Well-Provenanced Benchmarking

bufr

Homepage:
Spack package:
Versions:
11.5.0
Build Dependencies:
cmake
Description:
The NOAA bufr library contains subroutines, functions and other utilities that can be used to read (decode) and write (encode) data in BUFR, which is a WMO standard format for the exchange of meteorological data. This is part of the NCEPLIBS project.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
5.4.3, 4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython, py-pandas, bbmap, prodigal, metaeuk, sepp
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 2.2.0, 2.1.1, 2.1.0, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig, libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
20210808
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
gnuconfig, tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.1, 1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop, 2.2.0, 2.1.1, 2.1.0, 2.0.4, 2.0.2, 2.0.1
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Build Dependencies:
gnuconfig
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

c3d

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
cmake, itk
Link Dependencies:
itk
Description:
Image processing and conversion tool based on ITK.

ca-certificates-mozilla

Homepage:
Spack package:
Versions:
2022-07-19, 2022-04-26, 2022-03-29, 2022-03-18, 2022-02-01, 2021-10-26, 2021-09-30, 2021-07-05, 2021-05-25, 2021-04-13, 2021-01-19, 2020-12-08, 2020-10-14, 2020-07-22, 2020-06-24, 2020-01-01, 2019-11-27, 2019-10-16, 2019-08-28
Description:
The Mozilla CA certificate store in PEM format

cabana

Homepage:
Spack package:
Versions:
master, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, googletest, kokkos-legacy, kokkos, arborx, hypre-cmake, heffte, mpi
Link Dependencies:
kokkos-legacy, kokkos, arborx, hypre-cmake, heffte, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cuda, cmake, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
cuda, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.4, 1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
gnuconfig, libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
gnuconfig, cairo, libsigcpp, pkgconfig
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.8.0, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow, python
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
main, 2022.03.2, 2022.03.0, 0.3.0, 0.2.3, 0.2.2, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, cub, blt
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cub, blt
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
<