Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in the latest Spack release.

Spack currently has 4810 mainline packages:

3proxy nextflow py-whatshap
abduco nfft py-wheel
abinit nfs-ganesha py-whichcraft
abseil-cpp nfs-utils py-widgetsnbextension
abyss nghttp2 py-workload-automation
accfft nginx py-wradlib
acct ngmerge py-wrapt
accumulo ngmlr py-wub
ace nicstat py-wxmplot
ack nim py-wxpython
acl ninja py-xarray
acpid ninja-fortran py-xattr
activeharmony nix py-xdot
activemq nlcglib py-xenv
acts nlohmann-json py-xlrd
addrwatch nlohmann-json-schema-validator py-xlsxwriter
adept-utils nlopt py-xlwt
adf nmap py-xmlrunner
adiak nn-c py-xmltodict
adios nnvm py-xopen
adios2 node-js py-xpyb
adlbx notmuch py-xvfbwrapper
adol-c npb py-yahmm
advancecomp npm py-yajl
aegean npth py-yamlreader
aeskeyfind nrm py-yapf
aespipe ns-3-dev py-yarl
agrep nseg py-yolk3k
aida nsimd py-youtube-dl
akantu nspr py-yt
alan ntirpc py-ytopt
albany ntpoly py-zarr
albert numactl py-zc-buildout
alglib numamma py-zc-lockfile
allpaths-lg numap py-zict
alluxio numdiff py-zipp
alps nut py-zope-event
alquimia nvdimmsim py-zope-interface
alsa-lib nvptx-tools py-zxcvbn
aluminum nwchem pythia6
ambari nyancat pythia8
amber ocaml python
amdblis occa q-e-sirius
amg oce qbank
amg2013 oci-systemd-hook qbox
amgx ocl-icd qca
aml oclgrind qcachegrind
amp oclint qemu
ampliconnoise oclock qgis
amrex octave qhull
amrvis octave-optim qjson
anaconda2 octave-splines qmcpack
anaconda3 octave-struct qmd-progress
andi octopus qnnpack
angsd of-catalyst qorts
ant of-precice qperf
antimony omega-h qrupdate
antlr ompss qscintilla
ants ompt-openmp qt
aoflagger onednn qt-creator
aom oniguruma qtgraph
aomp ont-albacore qthreads
apachetop opa-psm2 qtkeychain
apcomp opam quantum-espresso
ape opari2 quartz
aperture-photometry open-iscsi quicksilver
apex open-isns quinoa
apple-libunwind openbabel quota
applewmproto openblas qwt
appres opencascade qwtpolar
apr opencoarrays r
apr-util opencv r-a4
aragorn opendx r-a4base
arbor openexr r-a4classif
arborx openfast r-a4core
archer openfdtd r-a4preproc
argobots openfoam r-a4reporting
argp-standalone openfoam-org r-abadata
argtable openfst r-abaenrichment
aria2 opengl r-abind
arm-forge openglu r-absseq
armadillo openimageio r-acde
arpack-ng openjdk r-acepack
arrayfire openjpeg r-acgh
arrow openkim-models r-acme
asagi openldap r-ada
ascent openloops r-adabag
asciidoc openmc r-ade4
asdcplib openmm r-adegenet
asdf-cxx openmolcas r-adegraphics
aspa openmpi r-adephylo
aspcud openmx r-adespatial
aspect opennurbs r-adgoftest
aspell openpa r-adsplit
aspell6-de openpbs r-aer
aspell6-en openpmd-api r-affxparser
aspell6-es openresty r-affy
aspera-cli openscenegraph r-affycomp
assimp openslide r-affycompatible
astra openslp r-affycontam
astral openspeedshop r-affycoretools
astyle openspeedshop-utils r-affydata
at-spi2-atk openssh r-affyexpress
at-spi2-core openssl r-affyilm
atf openstf r-affyio
athena opensubdiv r-affypdnn
atk opentsdb r-affyplm
atlas opium r-affyqcreport
atmi optional-lite r-affyrnadegradation
atom-dft optipng r-agdex
atompaw opus r-agilp
atop orbit2 r-agimicrorna
attr orca r-aims
audacious orfm r-aldex2
audacity orientdb r-allelicimbalance
audit-userspace orthofiller r-alpine
augustus orthofinder r-als
authselect orthomcl r-alsace
autoconf osmctools r-altcdfenvs
autoconf-archive osqp r-amap
autodock-gpu osu-micro-benchmarks r-ampliqueso
autodock-vina otf r-analysispageserver
autofact otf2 r-anaquin
autogen p11-kit r-aneufinder
automaded p3dfft3 r-aneufinderdata
automake p4est r-animation
avizo p7zip r-annaffy
aws-parallelcluster pacbio-daligner r-annotate
awscli pacbio-damasker r-annotationdbi
axel pacbio-dazz-db r-annotationfilter
axl pacbio-dextractor r-annotationforge
axom packmol r-annotationhub
babelflow pacvim r-aod
bam-readcount pagit r-ape
bamdst pagmo r-argparse
bamtools pal r-aroma-light
bamutil paml r-askpass
bannergrab panda r-assertthat
barrnap pandaseq r-backports
bart pandoc r-bamsignals
bash pango r-base64
bash-completion pangomm r-base64enc
bashtop papi r-bayesm
bat papyrus r-bbmisc
batctl paradiseo r-beachmat
bats parallel r-beanplot
bazel parallel-netcdf r-beeswarm
bbcp parallelmergetree r-bfast
bbmap paraver r-bfastspatial
bc paraview r-bglr
bcache parmetis r-bh
bcftools parmgridgen r-biasedurn
bcl2fastq2 parquet-cpp r-bibtex
bdftopcf parsimonator r-bindr
bdw-gc parsplice r-bindrcpp
beagle partitionfinder r-bio3d
beakerlib pasta r-biobase
bear patch r-biocfilecache
beast-tracer patchelf r-biocgenerics
beast1 patchutils r-biocinstaller
beast2 pathfinder r-biocmanager
bedops pax-utils r-biocneighbors
bedtools2 pbbam r-biocparallel
beforelight pbmpi r-biocsingular
benchmark pbsuite r-biocstyle
berkeley-db pciutils r-biom-utils
bertini pcma r-biomart
bgpdump pcre r-biomartr
bib2xhtml pcre2 r-biomformat
bigreqsproto pdf2svg r-biostrings
bind9 pdftk r-biovizbase
binutils pdsh r-bit
bioawk pdt r-bit64
biobloom pegtl r-bitops
biopieces pennant r-blob
bird percept r-blockmodeling
bismark perfstubs r-bmp
bison perl r-bookdown
bitlbee perl-acme-damn r-boot
bitmap perl-algorithm-diff r-boruta
blaspp perl-alien-build r-brew
blasr perl-alien-libxml2 r-broom
blasr-libcpp perl-app-cmd r-bsgenome
blast-legacy perl-array-utils r-bsgenome-hsapiens-ucsc-hg19
blast-plus perl-b-hooks-endofscope r-bsseq
blast2go perl-bio-searchio-hmmer r-bumphunter
blat perl-bioperl r-c50
blaze perl-bit-vector r-cairo
blis perl-cairo r-callr
bliss perl-capture-tiny r-car
blitz perl-carp-clan r-caracas
blktrace perl-cgi r-cardata
blogbench perl-class-data-inheritable r-caret
bmake perl-class-inspector r-caroline
bmi perl-class-load r-category
bml perl-class-load-xs r-catools
bohrium perl-clone r-cdcfluview
boinc-client perl-clone-choose r-cellranger
bolt perl-compress-raw-bzip2 r-checkmate
bonniepp perl-compress-raw-zlib r-checkpoint
bookleaf-cpp perl-config-general r-chemometrics
boost perl-contextual-return r-chron
boostmplcartesianproduct perl-cpan-meta-check r-circlize
bowtie perl-data-dumper r-class
bowtie2 perl-data-optlist r-classint
boxlib perl-data-stag r-cli
bpp-core perl-date-manip r-clipr
bpp-phyl perl-db-file r-clisymbols
bpp-seq perl-dbd-mysql r-clue
bpp-suite perl-dbd-pg r-cluster
bracken perl-dbd-sqlite r-clustergeneration
braker perl-dbi r-clusterprofiler
branson perl-devel-cycle r-cner
breakdancer perl-devel-globaldestruction r-coda
bref3 perl-devel-overloadinfo r-codetools
breseq perl-devel-stacktrace r-codex
bridger perl-devel-symdump r-coin
brigand perl-digest-md5 r-colorspace
brltty perl-dist-checkconflicts r-combinat
brotli perl-encode-locale r-commonmark
brpc perl-error r-complexheatmap
bsseeker2 perl-eval-closure r-compositions
bubblewrap perl-exception-class r-condop
bucky perl-exporter-tiny r-construct
buddy perl-extutils-config r-convevol
bumpversion perl-extutils-depends r-copula
busco perl-extutils-helpers r-corhmm
busybox perl-extutils-installpaths r-corpcor
butter perl-extutils-makemaker r-corrplot
butterflypack perl-extutils-pkgconfig r-countrycode
bwa perl-ffi-checklib r-covr
bwtool perl-file-chdir r-cowplot
byacc perl-file-copy-recursive r-crayon
byobu perl-file-homedir r-crosstalk
byte-unixbench perl-file-listing r-crul
bzip2 perl-file-pushd r-ctc
c-ares perl-file-sharedir-install r-cubature
c-blosc perl-file-slurp-tiny r-cubist
c-blosc2 perl-file-slurper r-curl
c-lime perl-file-which r-dada2
cabana perl-font-ttf r-data-table
cachefilesd perl-forks r-dbi
caffe perl-gd r-dbplyr
cairo perl-gdgraph r-debugme
cairomm perl-gdgraph-histogram r-decipher
caliper perl-gdtextutil r-delayedarray
callpath perl-graph r-delayedmatrixstats
camellia perl-graph-readwrite r-deldir
camx perl-hash-merge r-dendextend
canal perl-html-parser r-deoptim
candle-benchmarks perl-html-tagset r-deoptimr
cantera perl-http-cookies r-desc
canu perl-http-daemon r-deseq
cap3 perl-http-date r-deseq2
capnproto perl-http-message r-desolve
capstone perl-http-negotiate r-devtools
cardioid perl-inline r-diagrammer
casacore perl-inline-c r-dicekriging
cask perl-io-all r-dichromat
casper perl-io-compress r-diffusionmap
cassandra perl-io-html r-digest
catalyst perl-io-prompt r-diptest
catch2 perl-io-sessiondata r-dirichletmultinomial
cbench perl-io-socket-ssl r-dismo
cblas perl-io-string r-diversitree
cbtf perl-io-stringy r-dnacopy
cbtf-argonavis perl-io-tty r-do-db
cbtf-argonavis-gui perl-ipc-run r-domc
cbtf-krell perl-json r-doparallel
cbtf-lanl perl-libwww-perl r-dorng
ccache perl-libxml-perl r-dose
ccfits perl-list-moreutils r-dosnow
ccs-qcd perl-list-moreutils-xs r-dotcall64
cctools perl-log-log4perl r-downloader
cdbfasta perl-logger-simple r-dplyr
cdd perl-lwp-mediatypes r-dqrng
cddlib perl-lwp-protocol-https r-dss
cdecimal perl-mailtools r-dt
cdhit perl-math-bezier r-dtw
cdo perl-math-cdf r-dygraphs
ceed perl-math-cephes r-dynamictreecut
cereal perl-math-matrixreal r-e1071
ceres-solver perl-math-round r-earth
cfitsio perl-math-vecstat r-ecp
cgal perl-module-build r-edger
cgdb perl-module-build-tiny r-ellipse
cgdcbxd perl-module-implementation r-ellipsis
cgm perl-module-runtime r-emmli
cgns perl-module-runtime-conflicts r-energy
chai perl-moose r-enrichplot
changa perl-mozilla-ca r-ensembldb
channelflow perl-mro-compat r-envstats
chapel perl-namespace-clean r-ergm
charliecloud perl-net-http r-europepmc
charmpp perl-net-scp-expect r-evaluate
chatterbug perl-net-ssleay r-evd
check perl-number-format r-exactextractr
chgcentre perl-object-insideout r-exomecopy
chill perl-package-deprecationmanager r-exomedepth
chlorop perl-package-stash r-expint
chombo perl-package-stash-xs r-expm
chrony perl-padwalker r-factoextra
chrpath perl-parallel-forkmanager r-factominer
cinch perl-params-util r-fansi
circos perl-params-validate r-farver
cistem perl-parse-recdescent r-fastcluster
citcoms perl-path-tiny r-fastmatch
cityhash perl-pdf-api2 r-fdb-infiniummethylation-hg18
ck perl-pegex r-fdb-infiniummethylation-hg19
clamav perl-perl-unsafe-signals r-ff
clamr perl-perl-version r-fftwtools
clapack perl-perl4-corelibs r-fgsea
clara perl-perl6-slurp r-fields
claw perl-perlio-gzip r-filehash
cleaveland4 perl-perlio-utf8-strict r-findpython
cleverleaf perl-readonly r-fit-models
clfft perl-regexp-common r-fitdistrplus
clhep perl-scalar-list-utils r-flashclust
clinfo perl-scalar-util-numeric r-flexclust
clingo perl-set-intervaltree r-flexmix
cln perl-set-intspan r-fnn
cloc perl-set-scalar r-forcats
cloog perl-soap-lite r-foreach
cloverleaf perl-star-fusion r-forecast
cloverleaf3d perl-statistics-basic r-foreign
clp perl-statistics-descriptive r-formatr
clustal-omega perl-statistics-pca r-formula
clustalw perl-sub-exporter r-fpc
cmake perl-sub-exporter-progressive r-fracdiff
cmaq perl-sub-identify r-fs
cminpack perl-sub-install r-futile-logger
cmocka perl-sub-name r-futile-options
cmockery perl-sub-uplevel r-future
cmor perl-svg r-future-apply
cnmem perl-swissknife r-gamlss
cnpy perl-sys-sigaction r-gamlss-data
cntk perl-task-weaken r-gamlss-dist
cntk1bitsgd perl-term-readline-gnu r-gbm
cnvnator perl-termreadkey r-gbrd
codar-cheetah perl-test-cleannamespaces r-gcrma
codec2 perl-test-deep r-gdalutils
codes perl-test-differences r-gdata
coevp perl-test-exception r-gdsfmt
cohmm perl-test-fatal r-geiger
coin3d perl-test-memory-cycle r-genefilter
coinhsl perl-test-most r-genelendatabase
collectd perl-test-needs r-genemeta
collier perl-test-requires r-geneplotter
colm perl-test-requiresinternet r-generics
colordiff perl-test-warn r-genetics
comd perl-test-warnings r-genie3
comgr perl-text-csv r-genomeinfodb
commons-lang perl-text-diff r-genomeinfodbdata
commons-lang3 perl-text-format r-genomicalignments
commons-logging perl-text-simpletable r-genomicfeatures
compiz perl-text-soundex r-genomicranges
compositeproto perl-text-unidecode r-gensa
conda4aarch64 perl-time-hires r-geomorph
conduit perl-time-piece r-geonames
connect-proxy perl-timedate r-geoquery
constype perl-try-tiny r-geor
consul perl-uri r-geosphere
converge perl-want r-getopt
corenlp perl-www-robotrules r-getoptlong
coreutils perl-xml-dom r-ggally
corset perl-xml-dom-xpath r-ggbeeswarm
cosbench perl-xml-filter-buffertext r-ggbio
cosma perl-xml-libxml r-ggdendro
cosmoflow-benchmark perl-xml-libxslt r-ggforce
cosmomc perl-xml-namespacesupport r-ggjoy
cosp2 perl-xml-parser r-ggmap
cotter perl-xml-parser-lite r-ggplot2
couchdb perl-xml-quote r-ggplotify
cowsay perl-xml-regexp r-ggpubr
cp2k perl-xml-sax r-ggraph
cpio perl-xml-sax-base r-ggrepel
cpp-httplib perl-xml-sax-writer r-ggridges
cppad perl-xml-simple r-ggsci
cppcheck perl-xml-twig r-ggsignif
cppgsl perl-xml-writer r-ggvis
cpprestsdk perl-xml-xpathengine r-gh
cppunit perl-yaml r-gistr
cppzmq perl-yaml-libyaml r-git2r
cpu-features petsc r-glimma
cpuinfo pexsi r-glmnet
cquery pfft r-globaloptions
cracklib pflask r-globals
cradl pflotran r-glue
cram pfunit r-gmodels
cray-libsci pgdspider r-gmp
cromwell pgi r-go-db
cromwell-womtool pgmath r-goftest
cronie phantompeakqualtools r-gofuncr
cryptopp phast r-googlevis
cryptsetup phasta r-goplot
csa-c phist r-gosemsim
cscope phoenix r-goseq
csdp photos r-gostats
ctffind php r-gower
ctpl phrap-crossmatch-swat r-gplots
ctre phred r-graph
cub phylip r-graphlayouts
cube phylobayesmpi r-grbase
cubelib phyluce r-gridbase
cubew picard r-gridextra
cubist picsar r-gridgraphics
cuda picsarlite r-gsa
cuda-memtest pidx r-gsalib
cudnn pig r-gseabase
cufflinks pigz r-gsl
cunit pilon r-gsodr
cups pindel r-gss
curl pinentry r-gstat
cvs pipework r-gsubfn
cxxopts piranha r-gtable
cyrus-sasl pism r-gtools
czmq pixman r-gtrellis
dakota pixz r-gviz
daligner pkg-config r-gwmodel
damageproto pkgconf r-haven
damaris pktools r-hdf5array
damselfly planck-likelihood r-hdf5r
darshan-runtime plasma r-hexbin
darshan-util platypus r-hh
dash plink r-highr
datamash plink-ng r-hmisc
dataspaces plplot r-hms
datatransferkit plumed r-hoardr
dateutils pmdk r-htmltable
davix pmgr-collective r-htmltools
dbcsr pmix r-htmlwidgets
dbus pmlib r-httpcode
dbus-glib pnfft r-httpuv
dbxtool pngquant r-httr
dcap pngwriter r-hwriter
dcmtk pnmpi r-hypergraph
dd4hep poamsa r-ica
ddd pocl r-igraph
dealii podio r-illuminahumanmethylation450kanno-ilmn12-hg19
dealii-parameter-gui polymake r-illuminaio
debbuild poppler r-imager
decentralized-internet poppler-data r-impute
deconseq-standalone popt r-influencer
dejagnu porta r-ini
delly2 portage r-inline
delphes portcullis r-interactivedisplaybase
delta postgis r-intervals
denovogear postgresql r-inum
dftbplus powerapi r-ipred
dftd3-lib ppl r-iranges
dftfe pplacer r-irdisplay
dhpmm-f ppopen-appl-amr-fdm r-irkernel
dhtest ppopen-appl-bem r-irlba
dia ppopen-appl-bem-at r-isdparser
dialign ppopen-appl-dem-util r-iso
dialign-tx ppopen-appl-fdm r-iterators
diamond ppopen-appl-fdm-at r-janitor
diffmark ppopen-appl-fem r-jaspar2018
diffsplice ppopen-appl-fvm r-jomo
diffutils ppopen-at r-jpeg
dihydrogen ppopen-math-mp r-jsonlite
dimemas ppopen-math-vis r-kegg-db
ding-libs prank r-kegggraph
dire precice r-keggrest
direnv presentproto r-kernlab
discovar preseq r-kernsmooth
discovardenovo presto r-kknn
disktype price r-knitr
dislin primer3 r-ks
distcc prinseq-lite r-labeling
diy printproto r-lambda-r
dlpack prism r-laplacesdemon
dmd prmon r-lars
dmidecode prng r-later
dmlc-core probconsrna r-lattice
dmtcp procps r-latticeextra
dmxproto procps-ng r-lava
dnsmap prodigal r-lazyeval
dnsmasq profugusmc r-ldheatmap
dnstop proj r-leaflet
docbook-xml prokka r-leaps
docbook-xsl prometheus r-learnbayes
dock protobuf r-leiden
dos2unix protobuf-c r-lfe
dosfstools proxymngr r-lhs
dotconf prrte r-libcoin
dotnet-core-sdk pruners-ninja r-limma
double-conversion ps-lite r-listenv
doxygen psi4 r-lme4
dpdk pslib r-lmtest
draco psm r-locfit
dracut psmc r-log4r
dramsim2 pstreams r-loo
dray pugixml r-lpsolve
dri2proto pumi r-lsei
dri3proto pv r-lubridate
drill pvm r-lumi
dropwatch pxz r-magic
ds py-3to2 r-magick
dsdp py-4suite-xml r-magrittr
dsrc py-abipy r-makecdfenv
dssp py-absl-py r-maldiquant
dtcmp py-accimage r-manipulatewidget
duperemove py-adal r-mapplots
dyninst py-addict r-mapproj
dysco py-adios r-maps
ea-utils py-advancedhtmlparser r-maptools
eagle py-aenum r-markdown
earlyoom py-affine r-mass
easybuild py-agate r-matlab
ebms py-agate-dbf r-matr
eccodes py-agate-excel r-matrix
ecflow py-agate-sql r-matrixmodels
eclipse-gcj-parser py-aiohttp r-matrixstats
ecos py-alabaster r-mclust
ecp-io-sdk py-alembic r-mcmcglmm
ecp-proxy-apps py-altgraph r-mco
ecp-viz-sdk py-amqp r-mda
ed py-ansible r-memoise
editline py-antlr4-python3-runtime r-mergemaid
editres py-apache-libcloud r-metap
eem py-apex r-methylumi
efivar py-apipkg r-mgcv
eigen py-appdirs r-mgraster
elasticsearch py-applicationinsights r-mice
elemental py-appnope r-mime
elfutils py-apptools r-minfi
elk py-apscheduler r-miniui
elmerfem py-argcomplete r-minqa
elpa py-argon2-cffi r-misc3d
elsd py-argparse r-mitml
elsdc py-args r-mitools
elsi py-arrow r-mixtools
emacs py-arviz r-mlbench
ember py-asciitree r-mlinterfaces
emboss py-asdf r-mlr
enca py-ase r-mlrmbo
enchant py-asgiref r-mmwrweek
energyplus py-asn1crypto r-mnormt
entrezdirect py-aspy-yaml r-modelmetrics
environment-modules py-asserts r-modelr
eospac py-asteval r-modeltools
eq-r py-astor r-mpm
er py-astpretty r-msnbase
erfa py-astroid r-multcomp
erlang py-astropy r-multicool
ermod py-astropy-healpix r-multitaper
erne py-astropy-helpers r-multtest
es-shell py-astunparse r-munsell
esmf py-async-generator r-mvtnorm
espanso py-async-timeout r-mzid
essl py-asyncio r-mzr
etcd py-atomicwrites r-nanotime
ethminer py-atropos r-ncbit
ethtool py-attrs r-ncdf4
etsf-io py-audioread r-network
everytrace py-autopep8 r-networkd3
everytrace-example py-auxlib r-nimble
evieext py-avro r-nleqslv
evtgen py-avro-json-serializer r-nlme
exa py-awesome-slugify r-nloptr
exabayes py-awkward1 r-nmf
examinimd py-azure-batch r-nmof
examl py-azure-cli r-nnet
exampm py-azure-cli-command-modules-nspkg r-nnls
exasp2 py-azure-cli-core r-nor1mix
exiv2 py-azure-cli-nspkg r-nortest
exmcutils py-azure-cli-telemetry r-np
exodusii py-azure-common r-npsurv
exonerate py-azure-core r-numderiv
exonerate-gff3 py-azure-cosmos r-oligoclasses
expat py-azure-datalake-store r-openssl
expect py-azure-functions-devops-build r-openxlsx
express py-azure-graphrbac r-optparse
extrae py-azure-identity r-ordinal
exuberant-ctags py-azure-keyvault r-org-hs-eg-db
eztrace py-azure-keyvault-certificates r-organismdbi
f18 py-azure-keyvault-keys r-packrat
f2c py-azure-keyvault-nspkg r-pacman
f77-zmq py-azure-keyvault-secrets r-paleotree
f90cache py-azure-loganalytics r-pamr
fabtests py-azure-mgmt-advisor r-pan
fairlogger py-azure-mgmt-apimanagement r-parallelmap
fakechroot py-azure-mgmt-appconfiguration r-paramhelpers
falcon py-azure-mgmt-applicationinsights r-party
fann py-azure-mgmt-authorization r-partykit
faodel py-azure-mgmt-batch r-pathview
fast-global-file-status py-azure-mgmt-batchai r-pbapply
fasta py-azure-mgmt-billing r-pbdzmq
fastdb py-azure-mgmt-botservice r-pbkrtest
fastdfs py-azure-mgmt-cdn r-pcamethods
fastjar py-azure-mgmt-cognitiveservices r-pcapp
fastjet py-azure-mgmt-compute r-permute
fastjson py-azure-mgmt-consumption r-pfam-db
fastmath py-azure-mgmt-containerinstance r-phangorn
fastme py-azure-mgmt-containerregistry r-phantompeakqualtools
fastp py-azure-mgmt-containerservice r-philentropy
fastphase py-azure-mgmt-core r-phylobase
fastq-screen py-azure-mgmt-cosmosdb r-phyloseq
fastqc py-azure-mgmt-datalake-analytics r-phylostratr
fastqvalidator py-azure-mgmt-datalake-store r-phytools
fasttext py-azure-mgmt-datamigration r-picante
fasttree py-azure-mgmt-deploymentmanager r-pillar
fastx-toolkit py-azure-mgmt-devtestlabs r-pkgbuild
faust py-azure-mgmt-dns r-pkgconfig
fca py-azure-mgmt-eventgrid r-pkgload
fcgi py-azure-mgmt-eventhub r-pkgmaker
fd-find py-azure-mgmt-hdinsight r-plogr
feh py-azure-mgmt-imagebuilder r-plot3d
fenics py-azure-mgmt-iotcentral r-plotly
fenics-dolfinx py-azure-mgmt-iothub r-plotmo
fermi py-azure-mgmt-iothubprovisioningservices r-plotrix
fermikit py-azure-mgmt-keyvault r-pls
fermisciencetools py-azure-mgmt-kusto r-plyr
ferret py-azure-mgmt-loganalytics r-pmcmr
ffb py-azure-mgmt-managedservices r-png
ffmpeg py-azure-mgmt-managementgroups r-polspline
ffr py-azure-mgmt-maps r-polyclip
ffsb py-azure-mgmt-marketplaceordering r-polynom
fftw py-azure-mgmt-media r-popgenome
fgsl py-azure-mgmt-monitor r-popvar
figlet py-azure-mgmt-msi r-powerlaw
figtree py-azure-mgmt-netapp r-prabclus
file py-azure-mgmt-network r-praise
filebench py-azure-mgmt-nspkg r-preprocesscore
filo py-azure-mgmt-policyinsights r-prettyunits
fimpute py-azure-mgmt-privatedns r-processx
find-circ py-azure-mgmt-rdbms r-prodlim
findbugs py-azure-mgmt-recoveryservices r-progress
findutils py-azure-mgmt-recoveryservicesbackup r-proj
fio py-azure-mgmt-redhatopenshift r-proj4
fipscheck py-azure-mgmt-redis r-promises
fish py-azure-mgmt-relay r-protgenerics
fixesproto py-azure-mgmt-reservations r-proto
fj py-azure-mgmt-resource r-proxy
fjcontrib py-azure-mgmt-search r-pryr
fl py-azure-mgmt-security r-ps
flac py-azure-mgmt-servicebus r-pscbs
flang py-azure-mgmt-servicefabric r-pspline
flann py-azure-mgmt-signalr r-psych
flash py-azure-mgmt-sql r-ptw
flatbuffers py-azure-mgmt-sqlvirtualmachine r-purrr
flatcc py-azure-mgmt-storage r-qtl
flecsale py-azure-mgmt-trafficmanager r-quadprog
flecsi py-azure-mgmt-web r-quantmod
flecsph py-azure-multiapi-storage r-quantreg
flex py-azure-nspkg r-quantro
flexiblas py-azure-storage-common r-qvalue
flibcpp py-azure-storage-nspkg r-r-cache
flink py-azureml-automl-core r-r-methodss3
flint py-azureml-core r-r-oo
flit py-azureml-dataprep r-r-utils
fltk py-azureml-dataprep-native r-r6
flume py-azureml-dataset-runtime r-randomfields
flux-core py-azureml-pipeline r-randomfieldsutils
flux-sched py-azureml-pipeline-core r-randomforest
fluxbox py-azureml-pipeline-steps r-randomglm
fmt py-azureml-sdk r-ranger
foam-extend py-azureml-telemetry r-rann
folly py-azureml-train r-rappdirs
font-util py-azureml-train-automl-client r-raster
fontcacheproto py-azureml-train-core r-rbgl
fontconfig py-azureml-train-restclients-hyperdrive r-rbokeh
fontsproto py-babel r-rcmdcheck
fonttosfnt py-backcall r-rcolorbrewer
fortrilinos py-backports-abc r-rcpp
foundationdb py-backports-functools-lru-cache r-rcppannoy
fox py-backports-shutil-get-terminal-size r-rcpparmadillo
fp16 py-backports-ssl-match-hostname r-rcppblaze
fpc py-backports-tempfile r-rcppcctz
fping py-backports-weakref r-rcppcnpy
fpocket py-basemap r-rcppeigen
fqtrim py-basis-set-exchange r-rcpphnsw
fr-hit py-bcbio-gff r-rcppparallel
fraggenescan py-bcrypt r-rcppprogress
freebayes py-beautifulsoup4 r-rcurl
freeglut py-billiard r-rda
freeimage py-binaryornot r-rdpack
freeipmi py-bintrees r-readbitmap
freetype py-binwalk r-readr
freexl py-biom-format r-readxl
fribidi py-biomine r-recipes
frontistr py-biopandas r-registry
fseq py-biopython r-rematch
fsl py-bitarray r-rematch2
fslsfonts py-bitstring r-remotes
fstobdf py-black r-reordercluster
fstrack py-bleach r-reportingtools
ftgl py-blessed r-repr
fujitsu-mpi py-blessings r-reprex
funhpc py-blinker r-reshape
fuse-overlayfs py-blis r-reshape2
fyba py-blosc r-reticulate
fzf py-bokeh r-rex
g4abla py-boltons r-rferns
g4emlow py-boto r-rgdal
g4ensdfstate py-boto3 r-rgenoud
g4incl py-botocore r-rgeos
g4ndl py-bottleneck r-rgexf
g4neutronxs py-breakseq2 r-rgl
g4particlexs py-breathe r-rgooglemaps
g4photonevaporation py-brian r-rgraphviz
g4pii py-brian2 r-rhdf5
g4radioactivedecay py-brotlipy r-rhdf5lib
g4realsurface py-bsddb3 r-rhmmer
g4saiddata py-bx-python r-rhtslib
g4tendl py-bz2file r-rinside
gamess-ri-mp2-miniapp py-cached-property r-rio
gams py-cachetools r-rjags
ganglia py-cairocffi r-rjava
gapbs py-cartopy r-rjson
gapcloser py-catalogue r-rjsonio
gapfiller py-cclib r-rlang
gasnet py-cdat-lite r-rmariadb
gatk py-cdo r-rmarkdown
gaudi py-cdsapi r-rminer
gaussian py-celery r-rmpfr
gaussian-view py-certifi r-rmpi
gawk py-certipy r-rms
gblocks py-cf-units r-rmutil
gcc py-cffi r-rmysql
gccmakedep py-cfgv r-rnaseqmap
gccxml py-cftime r-rncl
gconf py-chai r-rnexml
gcta py-chainer r-rngtools
gdal py-chainmap r-rnoaa
gdb py-chardet r-robust
gdbm py-checkm-genome r-robustbase
gdk-pixbuf py-cheetah r-roc
gdl py-cheroot r-rocr
gdrcopy py-cherrypy r-rodbc
geant4 py-chronyk r-rook
geant4-data py-cinema-lib r-rots
geant4-vmc py-click r-roxygen2
gearshifft py-click-plugins r-rpart
gemmlowp py-cligj r-rpart-plot
genemark-et py-clint r-rpostgresql
gengetopt py-clipboard r-rprojroot
genomefinisher py-cloudpickle r-rrblup
genometools py-clustershell r-rrcov
genrich py-cmake r-rrpp
geode py-cmake-format r-rsamtools
geoip py-cmocean r-rsnns
geoip-api-c py-cnvkit r-rsolnp
geopm py-codecov r-rspectra
geos py-cogent r-rsqlite
gettext py-coilmq r-rstan
gflags py-colorama r-rstantools
ghost py-coloredlogs r-rstudioapi
ghostscript py-colorlog r-rsvd
ghostscript-fonts py-colormath r-rtracklayer
giflib py-colorpy r-rtsne
ginkgo py-colorspacious r-runit
giraph py-commonmark r-rvcheck
git py-configargparse r-rversions
git-fat-git py-configobj r-rvest
git-imerge py-configparser r-rzmq
git-lfs py-contextlib2 r-s4vectors
gitconddb py-convertdate r-samr
gl2ps py-cookiecutter r-sandwich
glew py-counter r-scales
glfmultiples py-cov-core r-scater
glfw py-coverage r-scatterplot3d
glib py-crispresso r-scrime
glibmm py-crossmap r-sctransform
glimmer py-cryptography r-sdmtools
glm py-cssselect r-segmented
global py-csvkit r-selectr
globalarrays py-current r-seqinr
glog py-cutadapt r-seqlogo
gloo py-cvxopt r-sessioninfo
glpk py-cvxpy r-seurat
glproto py-cycler r-sf
glusterfs py-cymem r-sfsmisc
glvis py-cython r-shape
gmake py-cyvcf2 r-shiny
gmap-gsnap py-d2to1 r-shinydashboard
gmime py-dask r-shinyfiles
gmodel py-dataclasses r-shortread
gmp py-dateparser r-siggenes
gmsh py-dbf r-simpleaffy
gmt py-dbfread r-singlecellexperiment
gmtsar py-deap r-sitmo
gnat py-decorator r-sm
gnome-common py-deeptools r-smoof
gnupg py-deeptoolsintervals r-sn
gnuplot py-defusedxml r-snakecase
gnutls py-dendropy r-snow
go py-deprecated r-snowfall
go-bootstrap py-deprecation r-snprelate
go-md2man py-descartes r-snpstats
gobject-introspection py-devlib r-som
goblin-hmc-sim py-dgl r-somaticsignatures
googletest py-dill r-sourcetools
gosam-contrib py-discover r-sp
gotcha py-diskcache r-spacetime
gource py-distributed r-spam
gpdb py-distro r-sparsem
gperf py-django r-spatial
gperftools py-dlcpar r-spatialeco
gpgme py-dnaio r-spatialpack
gpi-2 py-docker r-spatialreg
gplates py-docopt r-spatstat
gprolog py-docutils r-spatstat-data
gpu-burn py-docutils-stubs r-spatstat-utils
grackle py-dotnetcore2 r-spdata
gradle py-doxypy r-spdep
grads py-doxypypy r-speedglm
grafana py-dp-gp-cluster r-spem
grandr py-dryscrape r-splancs
graph500 py-dxchange r-splitstackshape
graphblast py-dxfile r-sqldf
graphicsmagick py-earthengine-api r-squarem
graphite2 py-easybuild-easyblocks r-squash
graphlib py-easybuild-easyconfigs r-sseq
graphmap py-easybuild-framework r-stabledist
graphviz py-ecdsa r-stanheaders
grass py-ecos r-stargazer
graylog2-server py-edffile r-statmod
grep py-editdistance r-statnet-common
grib-api py-elasticsearch r-stringi
gridlab-d py-elephant r-stringr
grnboost py-emcee r-strucchange
groff py-empy r-subplex
gromacs py-entrypoints r-summarizedexperiment
grpc py-enum34 r-suppdists
gsettings-desktop-schemas py-envisage r-survey
gsl py-ephem r-survival
gslib py-epydoc r-sva
gtk-doc py-espresso r-sys
gtkmm py-espressopp r-tarifx
gtkorvo-atl py-et-xmlfile r-taxizedb
gtkorvo-cercs-env py-eventlet r-tclust
gtkorvo-dill py-execnet r-teachingdemos
gtkorvo-enet py-exodus-bundler r-tensor
gtkplus py-extension-helpers r-tensora
gtksourceview py-extras r-testit
gts py-fabric r-testthat
guacamole-client py-fallocate r-tfbstools
guacamole-server py-fastaindex r-tfmpvalue
guidance py-fastcache r-th-data
guile py-fastcluster r-threejs
gunrock py-fasteners r-tibble
gurobi py-faststructure r-tidycensus
gzip py-fenics-dijitso r-tidygraph
h2database py-fenics-dolfinx r-tidyr
h5cpp py-fenics-ffcx r-tidyselect
h5hut py-fenics-fiat r-tidyverse
h5part py-fenics-ufl r-tiff
h5utils py-filelock r-tigris
h5z-zfp py-filemagic r-timedate
hacckernels py-fiona r-tinytex
hadoop py-fiscalyear r-tmixclust
hal py-fisher r-topgo
halc py-fits-tools r-triebeard
half py-fixtures r-trimcluster
hama py-flake8 r-truncdist
hapcut2 py-flake8-import-order r-truncnorm
hapdip py-flake8-polyfill r-trust
haploview py-flask r-tseries
haproxy py-flask-compress r-tsne
hardlink py-flask-socketio r-ttr
harfbuzz py-flexx r-tweenr
harminv py-flye r-txdb-hsapiens-ucsc-hg18-knowngene
hazelcast py-fn-py r-txdb-hsapiens-ucsc-hg19-knowngene
hbase py-fortran-language-server r-tximport
hbm-dramsim2 py-fortranformat r-ucminf
hc py-fparser r-udunits2
hcol py-freezegun r-units
hcoll py-fsspec r-upsetr
hdf py-funcsigs r-urca
hdf5 py-functools32 r-urltools
hdf5-blosc py-fusepy r-usethis
hdfview py-future r-utf8
healpix-cxx py-futures r-uuid
heaptrack py-fypp r-uwot
heffte py-gast r-variantannotation
helics py-gcovr r-varselrf
help2man py-gdbgui r-vcd
henson py-gdc-client r-vctrs
hepmc py-gee-asset-manager r-vegan
hepmc3 py-geeadd r-vfs
hepmcanalysis py-geeup r-vgam
heppdt py-genders r-vioplot
heputils py-genshi r-vipor
herwigpp py-gensim r-viridis
hibench py-geoalchemy2 r-viridislite
hic-pro py-geopandas r-visnetwork
highfive py-gevent r-vsn
highwayhash py-gf256 r-watermelon
hiop py-git-review r-webshot
hip py-gitdb r-wgcna
hip-rocclr py-gluoncv r-whisker
hipblas py-gnuplot r-withr
hipcub py-goatools r-xde
hipify-clang py-google-api-core r-xfun
hipsparse py-google-api-python-client r-xgboost
hipsycl py-google-auth r-xlconnect
hiredis py-google-auth-httplib2 r-xlconnectjars
hisat2 py-google-auth-oauthlib r-xlsx
hisea py-google-cloud-core r-xlsxjars
hive py-google-cloud-storage r-xmapbridge
hmmer py-google-pasta r-xml
homer py-google-resumable-media r-xml2
hoomd-blue py-googleapis-common-protos r-xnomial
hotspot py-googledrivedownloader r-xopen
hpcc py-gpaw r-xtable
hpccg py-gputil r-xts
hpcg py-gpy r-xvector
hpctoolkit py-gpytorch r-yaimpute
hpcviewer py-gql r-yaml
hpgmg py-graphql-core r-yapsa
hping py-graphviz r-yaqcaffy
hpl py-greenlet r-yarn
hpx py-grequests r-zeallot
hpx5 py-griddataformats r-zip
hsa-rocr-dev py-grpcio r-zlibbioc
hsakmt py-gsd r-zoo
hsakmt-roct py-guidata r3d
hsf-cmaketools py-guiqwt rabbitmq
hssp py-h5glance racon
hstr py-h5py raft
htop py-h5sh ragel
htslib py-hacking raja
http-get py-hatchet ramulator
http-load py-hdfs randfold
http-parser py-healpy random123
http-ping py-heapdict randrproto
http-post py-hepdata-validator range-v3
httpd py-hieroglyph rankstr
httperf py-horovod rapidjson
httpie py-hpcbench rasdaemon
httpress py-hpccm ravel
hub py-html2text raxml
hudi py-html5lib ray
hugo py-htmlgen rccl
hunspell py-htseq rclone
hwloc py-httpbin rdma-core
hybpiper py-httplib2 rdp-classifier
hybridsim py-humanfriendly rdptools
hydra py-humanize re2
hydrogen py-hvac re2c
hyperscan py-hypothesis readfq
hyphy py-ics readline
hypre py-identify recon
i3 py-idna recorder
ibm-databroker py-idna-ssl recordproto
ibm-java py-illumina-utils redis
ibmisc py-imageio reditools
iceauth py-imagesize redset
icedtea py-iminuit redundans
icet py-importlib reframe
ico py-importlib-metadata regcm
icu4c py-importlib-resources relax
id3lib py-inference-schema relion
idba py-iniparse remhos
idl py-intervaltree rempi
iegenlib py-invoke rename
ignite py-ipaddress rendercheck
igraph py-ipdb renderproto
igv py-ipykernel repeatmasker
igvtools py-ipython repeatmodeler
ilmbase py-ipython-genutils repeatscout
imagemagick py-ipywidgets resourceproto
imake py-irpf90 revbayes
imlib2 py-isodate revocap-coupler
imp py-isort revocap-refiner
impute2 py-itsdangerous rgb
infernal py-jaraco-functools rhash
influxdb py-javaproperties rinetd
iniparser py-jdatetime ripgrep
inputproto py-jdcal rivet
intel py-jedi rlwrap
intel-daal py-jeepney rmats
intel-gpu-tools py-jellyfish rmlab
intel-ipp py-jinja2 rna-seqc
intel-llvm py-jinja2-time rnaz
intel-mkl py-jmespath rngstreams
intel-mpi py-joblib rocalution
intel-mpi-benchmarks py-jplephem rocblas
intel-parallel-studio py-jprops rocfft
intel-pin py-jpype1 rocketmq
intel-tbb py-jsmin rocksdb
intel-xed py-json5 rockstar
interproscan py-jsondiff rocm-bandwidth-test
intltool py-jsonpatch rocm-clang-ocl
ioapi py-jsonpickle rocm-cmake
ior py-jsonpointer rocm-dbgapi
iozone py-jsonschema rocm-debug-agent
iperf2 py-junit-xml rocm-device-libs
iperf3 py-jupyter rocm-gdb
ipopt py-jupyter-client rocm-opencl
iq-tree py-jupyter-console rocm-smi
isaac py-jupyter-core rocm-smi-lib
isaac-server py-jupyterhub rocminfo
isc-dhcp py-jupyterlab rocmvalidationsuite
isescan py-jupyterlab-pygments rocprim
isl py-jupyterlab-server rocprofiler-dev
iso-codes py-keras rocrand
itstool py-keras-applications rocsolver
itsx py-keras-preprocessing rocsparse
iwyu py-kerberos rocthrust
jackcess py-kitchen roctracer-dev
jafka py-kiwisolver rodinia
jags py-kmodes root
jali py-knack rose
jansi py-kombu ross
jansi-native py-lark-parser routino
jansson py-latexcodec rpcsvc-proto
jasper py-lazy rr
jbigkit py-lazy-object-proxy rrdtool
jblob py-lazy-property rsbench
jchronoss py-lazyarray rsem
jdk py-leather rstart
jellyfish py-libconf rsync
jemalloc py-libensemble rsyslog
jetty-project py-librosa rt-tests
jhpcn-df py-ligo-segments rtags
jimtcl py-line-profiler rtax
jline3 py-linecache2 ruby
jmol py-lit ruby-asciidoctor
jpegoptim py-llvmlite ruby-erubis
jq py-lmfit ruby-gnuplot
json-c py-localcider ruby-hpricot
json-cwx py-locket ruby-mustache
json-fortran py-lockfile ruby-narray
json-glib py-logilab-common ruby-rake
jsoncpp py-louie ruby-rdiscount
jstorm py-lru-dict ruby-ronn
jube py-lscsoft-glue ruby-rubyinline
judy py-luigi ruby-svn2git
julea py-lxml ruby-terminal-table
julia py-lzstring ruby-thor
k8 py-m2r ruby-tmuxinator
kafka py-macholib ruby-unicode-display-width
kahip py-machotools ruby-xdg
kaiju py-macs2 ruby-zentest
kaks-calculator py-maestrowf rust
kaldi py-magic rust-bindgen
kallisto py-mako sabre
karma py-markdown saga-gis
kassiopeia py-markovify sailfish
kbd py-markupsafe salmon
kbproto py-matplotlib sambamba
kcov py-mayavi samblaster
kdiff3 py-mccabe samrai
kea py-mdanalysis samtools
kealib py-mechanize sandbox
keepalived py-memory-profiler satsuma2
kentutils py-merlin savanna
keyutils py-metasv saws
kibana py-methylcode sblim-sfcc
kim-api py-mg-rast-tools sbml
kinesis py-misopy sbt
kitty py-mistune scala
kmergenie py-mixedhtseq scalasca
kmod py-mlxtend scallop
knem py-mmcv scalpel
kokkos py-mmtf-python scan-for-matches
kokkos-kernels py-mo-pack scantailor
kokkos-kernels-legacy py-mock scons
kokkos-legacy py-modred scorec-core
kokkos-nvcc-wrapper py-moltemplate scorep
kraken py-monotonic scotch
kraken2 py-monty scr
krb5 py-more-itertools screen
krims py-mpi4py scripts
kripke py-mpld3 scrnsaverproto
kubernetes py-mpmath scs
kvasir-mpl py-msal sctk
kvtree py-msal-extensions sdl2
kylin py-msgpack sdl2-image
ladot py-msrest sdsl-lite
laghos py-msrestazure seacas
lame py-multi-key-dict sed
lammps py-multidict sensei
lapackpp py-multiprocess sentencepiece
last py-multiqc sentieon-genomics
lastz py-munch seqan
laszip py-murmurhash seqkit
latte py-mx seqprep
launchmon py-myhdl seqtk
lazyten py-mypy serf
lbann py-mypy-extensions sessreg
lbxproxy py-mysql-connector-python setserial
lbzip2 py-mysqlclient setxkbmap
lcals py-mysqldb1 sfcgal
lcio py-natsort sga
lcms py-nbclient sgpp
lcov py-nbconvert shadow
ldak py-nbformat shapeit
ldc py-nc-time-axis shapeit4
ldc-bootstrap py-ndg-httpsclient shapelib
legion py-neo shared-mime-info
lemon py-neobolt shark
leptonica py-neotime shc
lesstif py-nest-asyncio shengbte
leveldb py-nestle shiny-server
lftp py-netcdf4 shiro
lhapdf py-netifaces shocklibs
lhapdf5 py-netket shoremap
libaec py-networkit shortbred
libaio py-networkx shortstack
libapplewm py-nltk showfont
libarchive py-nodeenv shtools
libassuan py-nose shuffile
libatasmart py-nose-cov sickle
libatomic-ops py-nose2 siesta
libbacktrace py-nosexcover signalp
libbeagle py-notebook signify
libbeato py-numba silo
libbsd py-numcodecs simgrid
libbson py-numexpr simmetrix-simmodsuite
libbytesize py-numexpr3 simplemoc
libc py-numpy simul
libcanberra py-numpydoc simulationio
libcap py-oauth2client singularity
libcap-ng py-oauthlib singularity-legacy
libceed py-olefile sirius
libcerf py-onnx skilion-onedrive
libcgroup py-ont-fast5-api skopeo
libcint py-openpmd-validator sl
libcircle py-openpyxl slang
libconfig py-openslide-python slate
libconfuse py-opentuner sleef
libcroco py-opppy slepc
libctl py-opt-einsum slf4j
libdaemon py-ordereddict slider
libdap4 py-oset sloccount
libdivsufsort py-osqp slurm
libdmx py-overpy smalt
libdrm py-owslib smartdenovo
libdwarf py-packaging smartmontools
libeatmydata py-palettable smof
libedit py-pamela smproxy
libelf py-pandas snakemake
libemos py-pandocfilters snap
libepoxy py-parameterized snap-berkeley
libestr py-paramiko snap-korf
libev py-paramz snappy
libevdev py-parse snbone
libevent py-parsedatetime sniffles
libevpath py-parso snpeff
libexif py-partd snphylo
libfabric py-path-py snptest
libfastcommon py-pathlib soapdenovo-trans
libfastjson py-pathlib2 soapdenovo2
libffi py-pathos sofa-c
libffs py-pathspec sollve
libfive py-patsy solr
libflame py-pauvre somatic-sniper
libfontenc py-pbr sonlib
libfs py-pep8 sortmerna
libfuse py-pep8-naming sosflow
libgcrypt py-performance source-highlight
libgd py-periodictable sowing
libgeotiff py-petastorm sox
libgit2 py-petsc4py spades
libglvnd py-pexpect span-lite
libgpg-error py-phonopy spark
libgpuarray py-pickleshare sparse
libgridxc py-picrust sparsehash
libgtextutils py-pid sparta
libharu py-pil spath
libhbaapi py-pillow spdlog
libhio py-pillow-simd spectrum-mpi
libhugetlbfs py-pint speex
libiberty py-pip spfft
libibumad py-pipits spglib
libical py-pispino sph2pipe
libice py-pkgconfig spherepack
libiconv py-pkginfo spindle
libid3tag py-plac spiral
libidl py-planar spla
libidn2 py-planet spm
libimagequant py-plotly spot
libimobiledevice py-pluggy sprng
libint py-ply sqlite
libiscsi py-pmw sqlite-jdbc
libjpeg py-pomegranate sqlitebrowser
libjpeg-turbo py-portalocker sqoop
libkcapi py-portend squashfs
libkml py-poster squid
libksba py-pox sratoolkit
liblas py-poyo sse2neon
liblbxutil py-ppft sshpass
liblockfile py-pre-commit ssht
libluv py-preshed ssmtp
libmad py-prettytable sspace-longread
libmatheval py-profilehooks sspace-standard
libmaxminddb py-progress sst-core
libmesh py-progressbar2 sst-dumpi
libmetalink py-projectq sst-elements
libmicrohttpd py-prometheus-client sst-macro
libmmtf-cpp py-prompt-toolkit sst-transports
libmng py-protobuf stacks
libmnl py-psutil staden-io-lib
libmo-unpack py-psyclone star
libmodbus py-psycopg2 star-ccm-plus
libmonitor py-ptyprocess startup-notification
libnbc py-pudb stat
libnet py-pure-sasl stata
libnetworkit py-py static-analysis-suite
libnfnetlink py-py-cpuinfo stc
libnl py-py2bit steps
libnotify py-py2cairo stinger
libnova py-py2neo storm
libnrm py-py4j stow
libnsl py-py6s strace
libogg py-pyani stream
liboldx py-pyarrow strelka
libp11 py-pyasn1 stress
libpam py-pyasn1-modules string-view-lite
libpaper py-pybedtools stringtie
libpcap py-pybigwig structure
libpciaccess py-pybind11 strumpack
libpeas py-pybtex su2
libpfm4 py-pybtex-docutils sublime-text
libpipeline py-pycairo subread
libplist py-pycares subversion
libpmemobj-cpp py-pycbc suite-sparse
libpng py-pychecker sumaclust
libproxy py-pycifrw sumo
libpsl py-pycmd sundials
libpthread-stubs py-pycodestyle superlu
libquo py-pycosat superlu-dist
librdkafka py-pycparser superlu-mt
librelp py-pycrypto supernova
librom py-pycuda sw4lite
librsb py-pycurl swap-assembler
librsvg py-pydatalog swarm
librtlsdr py-pydeps swfft
libsamplerate py-pydispatcher swftools
libseccomp py-pydot swiftsim
libsecret py-pydot2 swig
libsharp py-pydotplus swipl
libshm py-pydv symengine
libsigcpp py-pyeda sympol
libsigsegv py-pyelftools sysbench
libsm py-pyepsg syscalc
libsndfile py-pyface sysfsutils
libsodium py-pyfaidx sysget
libspatialindex py-pyfasta sysstat
libspatialite py-pyfftw systemtap
libspiro py-pyfits sz
libsplash py-pyflakes tabix
libssh py-pygdal tajo
libssh2 py-pygdbmi talass
libsvm py-pygelf talloc
libszip py-pygit2 tangram
libtar py-pyglet tantan
libtasn1 py-pygments tar
libtermkey py-pygments-pytest targetp
libtheora py-pygobject task
libtiff py-pygpu taskd
libtirpc py-pygresql tasmanian
libtlx py-pygtk tassel
libtomlc99 py-pyheadtail tau
libtommath py-pyinstrument tauola
libtool py-pyinstrument-cext tbl2asn
libtree py-pyjwt tcl
libuecc py-pyke tcl-itcl
libunistring py-pykml tcl-tcllib
libunwind py-pykwalify tcl-tclxml
libusb py-pyliblzma tclap
libusbmuxd py-pylint tcoffee
libuser py-pymatgen tcpdump
libuuid py-pymc3 tcptrace
libuv py-pymeeus tcsh
libvdwxc py-pyminifier tdengine
libverto py-pymol tealeaf
libvips py-pymongo teckit
libvorbis py-pymorph tecplot
libvterm py-pympler templight
libwebp py-pymysql templight-tools
libwebsockets py-pynacl tengine
libwindowswm py-pynio tensorflow-serving-client
libx11 py-pynn termcap
libxau py-pyodbc tesseract
libxaw py-pyomo testdfsio
libxaw3d py-pyopencl tetgen
libxc py-pyopenssl tethex
libxcb py-pypar texinfo
libxcomposite py-pyparsing texlive
libxcrypt py-pypeflow texstudio
libxcursor py-pypeg2 textparser
libxdamage py-pyperclip tfel
libxdmcp py-pyperf the-platinum-searcher
libxevie py-pyprof2html the-silver-searcher
libxext py-pyproj thepeg
libxfixes py-pyqi thornado-mini
libxfont py-pyqt4 thrift
libxfont2 py-pyqt5 thrust
libxfontcache py-pyquaternion tig
libxft py-pyrad time
libxi py-pyrosar timedatex
libxinerama py-pyrsistent timemory
libxkbcommon py-pysam tinker
libxkbfile py-pyscaf tinyxml
libxkbui py-pyscf tinyxml2
libxml2 py-pyserial tioga
libxmu py-pyshp tippecanoe
libxp py-pyside tiptop
libxpm py-pyside2 tix
libxpresent py-pysmartdl tixi
libxprintapputil py-pysocks tk
libxprintutil py-pysolar tldd
libxrandr py-pyspark tmalign
libxrender py-pysqlite tmhmm
libxres py-pytailf tmux
libxscrnsaver py-pytest tomcat
libxshmfence py-pytest-cache tophat
libxslt py-pytest-check-links totalview
libxsmm py-pytest-cov tppred
libxstream py-pytest-flake8 tracer
libxt py-pytest-forked transabyss
libxtrap py-pytest-httpbin transdecoder
libxtst py-pytest-isort transposome
libxv py-pytest-mock transset
libxvmc py-pytest-mypy trapproto
libxxf86dga py-pytest-pep8 tree
libxxf86misc py-pytest-runner treelite
libxxf86vm py-pytest-xdist treesub
libyaml py-python-daemon trf
libyogrt py-python-dateutil triangle
libzip py-python-docs-theme trident
libzmq py-python-editor trilinos
liggghts py-python-engineio trilinos-catalyst-ioss-adapter
lighttpd py-python-fmask trimal
ligra py-python-gitlab trimgalore
likwid py-python-igraph trimmomatic
linkphase3 py-python-jenkins trinity
linsys-v py-python-json-logger trinotate
linux-headers py-python-ldap trnascan-se
linux-pam py-python-levenshtein tulip
listres py-python-logstash turbine
lizard py-python-lzo turbomole
lksctp-tools py-python-magic turnserver
llvm py-python-mapnik tut
llvm-amdgpu py-python-meep twm
llvm-flang py-python-memcached tycho2
llvm-openmp py-python-oauth2 typhon
llvm-openmp-ompt py-python-rapidjson typhonio
lm-sensors py-python-slugify uchardet
lmbench py-python-socketio ucx
lmdb py-python-subunit udunits
lmod py-python-swiftclient ufo-core
lndir py-python-utils ufo-filters
log4c py-pythonqwt umap
log4cplus py-pytimeparse umoci
log4cxx py-pytools umpire
logrotate py-pytz unblur
logstash py-pyudev uncrustify
loki py-pyugrid unibilium
looptools py-pyutilib unifdef
lordec py-pyvcf unifyfs
lrslib py-pywavelets unison
lrzip py-pywcs units
lsf py-pyyaml unittest-cpp
lshw py-pyzmq unixodbc
lsof py-qtawesome unqlite
ltp py-qtconsole unrar
ltr-retriever py-qtpy unuran
ltrace py-quantities unzip
lua py-quast upcxx
lua-bitlib py-queryablelist uqtk
lua-lpeg py-radical-utils uriparser
lua-luafilesystem py-ranger-fm usbutils
lua-luajit py-rasterio usearch
lua-luaposix py-ratelim userspace-rcu
lua-mpack py-raven utf8proc
lucene py-rdflib util-linux
luit py-readme-renderer util-macros
lulesh py-recommonmark uuid
lumpy-sv py-redis uvw
lustre py-regex valgrind
lvm2 py-reportlab vampirtrace
lwgrp py-repoze-lru vardictjava
lwm2 py-reproject variorum
lxc py-requests varnish-cache
lynx py-requests-futures varscan
lz4 py-requests-mock vasp
lzma py-requests-oauthlib vbfnlo
lzo py-requests-toolbelt vc
lzop py-resampy vcftools
m4 py-restview vcsh
macsio py-resultsfile vdt
mad-numdiff py-retrying veccore
madgraph5amc py-rios vecgeom
mafft py-rnacocktail veclibfort
magics py-robotframework vegas2
magma py-rope veloc
mahout py-rpy2 velvet
makedepend py-rsa velvetoptimiser
maker py-rseqc verilator
mallocmc py-rtree verrou
maloc py-ruamel-ordereddict vesta
man-db py-ruamel-yaml vgm
manta py-ruamel-yaml-clib videoproto
mapnik py-s3cmd viennarna
mapserver py-s3transfer viewres
maq py-sacremoses vifi
margo py-saga-python vigra
mariadb py-scandir vim
mariadb-c-client py-scientificpython virtualgl
mark py-scikit-build visit
masa py-scikit-image vizglow
masurca py-scikit-learn vmatch
mathematica py-scikit-optimize vmc
matio py-scipy vmd
matlab py-scoop voropp
maven py-scp votca-csg
maverick py-scs votca-csg-tutorials
mawk py-seaborn votca-csgapps
mbdyn py-secretstorage votca-ctp
mbedtls py-selenium votca-tools
mc py-semantic-version votca-xtp
mcl py-semver vpfft
mcpp py-send2trash vpic
mcutils py-sentencepiece vsearch
mdtest py-setproctitle vsftpd
med py-setuptools vt
meep py-setuptools-git vtk
mefit py-setuptools-rust vtk-h
megadock py-setuptools-scm vtk-m
megahit py-setuptools-scm-git-archive wannier90
memaxes py-sfepy warpx
memcached py-sgp4 watch
meme py-sh wcs
memkind py-shapely wcslib
memsurfer py-shiboken webbench
memtester py-shroud weechat
meraculous py-simplegeneric weighttp
mercurial py-simplejson wget
mercury py-simplekml wgsim
mesa py-singledispatch which
mesa-demos py-sip whizard
mesa-glu py-six windowswmproto
meshkit py-slepc4py wireshark
meson py-slurm-pipeline wonton
mesquite py-smart-open wordnet
metabat py-smmap workrave
metall py-sncosmo wrf
metaphysicl py-snowballstemmer wrk
metis py-snuggs wt
mfem py-sonlib wtdbg2
mg py-sortedcontainers wxpropgrid
mgis py-soundfile wxwidgets
microbiomeutil py-soupsieve x11perf
migrate py-spacy xabclib
mii py-spacy-models-en-core-web-sm xapian-core
minced py-spacy-models-en-vectors-web-lg xauth
mindthegap py-spatialist xbacklight
miniaero py-spatialite xbiff
miniamr py-spdlog xbitmaps
miniasm py-spectra xbraid
miniconda2 py-spefile xcalc
miniconda3 py-spglib xcb-demo
minife py-sphinx xcb-proto
miniforge3 py-sphinx-bootstrap-theme xcb-util
minigan py-sphinx-copybutton xcb-util-cursor
minighost py-sphinx-gallery xcb-util-errors
minigmg py-sphinx-rtd-theme xcb-util-image
minimap2 py-sphinxautomodapi xcb-util-keysyms
minimd py-sphinxcontrib-applehelp xcb-util-renderutil
minio py-sphinxcontrib-bibtex xcb-util-wm
miniqmc py-sphinxcontrib-devhelp xcb-util-xrm
minisign py-sphinxcontrib-htmlhelp xcfun
minismac2d py-sphinxcontrib-issuetracker xclip
minitri py-sphinxcontrib-jsmath xclipboard
minivite py-sphinxcontrib-mermaid xclock
minixyce py-sphinxcontrib-programoutput xcmiscproto
minizip py-sphinxcontrib-qthelp xcmsdb
minuit py-sphinxcontrib-serializinghtml xcompmgr
miopen-hip py-sphinxcontrib-trio xconsole
miopen-opencl py-sphinxcontrib-websupport xcursor-themes
miopengemm py-spyder xcursorgen
mira py-spykeutils xdbedizzy
miranda py-sqlalchemy xditview
mirdeep2 py-sqlparse xdm
mitofates py-srsly xdmf3
mitos py-sshtunnel xdotool
mixcr py-statsmodels xdpyinfo
mkfontdir py-stdlib-list xdriinfo
mkfontscale py-stestr xedit
mlhka py-stevedore xerces-c
mlocate py-stopit xeus
mmg py-storm xev
moab py-stratify xextproto
modern-wheel py-stsci-distutils xeyes
modylas py-subprocess32 xf86bigfontproto
mofem-cephas py-subrosa xf86dga
mofem-fracture-module py-svgpathtools xf86dgaproto
mofem-minimal-surface-equation py-svgwrite xf86driproto
mofem-users-modules py-symengine xf86miscproto
mokutil py-symfit xf86rushproto
molcas py-sympy xf86vidmodeproto
mongo-c-driver py-syned xfd
mongo-cxx-driver py-systemd-python xfindproxy
mongodb-async-driver py-tables xfontsel
mono py-tabulate xfs
montage py-tap-py xfsinfo
moosefs py-tatsu xfwp
moreutils py-tblib xgamma
mosh py-tempora xgboost
mothur py-tensorboard xgc
motif py-tensorboard-plugin-wit xhmm
motioncor2 py-tensorboardx xhost
mount-point-attributes py-tensorflow xineramaproto
mozjs py-tensorflow-estimator xinit
mpark-variant py-termcolor xinput
mpc py-terminado xios
mpdecimal py-testinfra xkbcomp
mpe2 py-testpath xkbdata
mpest py-testrepository xkbevd
mpfr py-testresources xkbprint
mpi-bash py-testscenarios xkbutils
mpich py-testtools xkeyboard-config
mpifileutils py-tetoolkit xkill
mpilander py-text-unidecode xload
mpileaks py-textblob xlogo
mpip py-texttable xlsatoms
mpir py-tfdlpack xlsclients
mpix-launch-swift py-theano xlsfonts
mpt py-thinc xmag
mrbayes py-thirdorder xman
mrbench py-threadpoolctl xmessage
mrcpp py-tifffile xmh
mrnet py-tokenizers xmlf90
mrtrix3 py-toml xmlrpc-c
mscgen py-tomopy xmlto
msgpack-c py-toolz xmodmap
mshadow py-torch xmore
msmc py-torch-cluster xorg-cf-files
msmc2 py-torch-geometric xorg-docs
mstk py-torch-nvidia-apex xorg-gtest
mt-metis py-torch-scatter xorg-server
multitail py-torch-sparse xorg-sgml-doctools
multitime py-torch-spline-conv xphelloworld
multiverso py-torchaudio xplor-nih
mumax py-torchsummary xplsprinters
mummer py-torchtext xpmem
mummer4 py-torchvision xpr
mumps py-tornado xprehashprinterlist
munge py-tox xprop
muparser py-tpot xproto
muscle py-tqdm xproxymanagementprotocol
muse py-traceback2 xqilla
musl py-traitlets xrandr
muster py-traits xrdb
mutationpp py-traitsui xrefresh
mvapich2 py-transformers xrootd
mvapich2-gdr py-treehash xrx
mvapich2x py-tuiview xsbench
mxm py-twine xscope
mxml py-twisted xsd
mxnet py-typed-ast xsdk
mysql py-typesentry xsdk-examples
nacos py-typing xsdktrilinos
nag py-typing-extensions xset
nalu py-tzlocal xsetmode
nalu-wind py-ujson xsetpointer
namd py-umalqurra xsetroot
nano py-umi-tools xsimd
nanoflann py-uncertainties xsm
nanomsg py-unicycler xstdcmap
nanopb py-unidecode xtensor
nasm py-unittest2 xtensor-python
nauty py-unittest2py3k xterm
ncbi-magicblast py-update-checker xtl
ncbi-rmblastn py-uproot4 xtrans
ncbi-toolkit py-uritemplate xtrap
nccl py-urllib3 xts
nccl-tests py-urwid xvidtune
nccmp py-us xvinfo
ncdu py-usgs xwd
ncftp py-utils xwininfo
ncl py-uvw xwud
nco py-uwsgi xxhash
ncurses py-vcf-kit xz
ncview py-vcversioner yajl
ndiff py-vermin yambo
nek5000 py-versioneer yaml-cpp
nekbone py-vine yara
nekcem py-virtualenv yarn
nektar py-virtualenv-clone yasm
nektools py-virtualenvwrapper ycsb
neo4j py-voluptuous yoda
neovim py-vsc-base yorick
nest py-vsc-install z3
netcdf-c py-vsts zabbix
netcdf-cxx py-vsts-cd-manager zfp
netcdf-cxx4 py-wand zfs
netcdf-fortran py-warlock zip
netdata py-wasabi zipkin
netgauge py-wcsaxes zlib
netgen py-wcwidth zoltan
netkit-ftp py-weave zookeeper
netlib-lapack py-webencodings zookeeper-benchmark
netlib-scalapack py-webkit-server zsh
netlib-xblas py-weblogo zstd
netperf py-websocket-client zziplib
nettle py-websockets None
neuron py-werkzeug None

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abinit

Homepage:
Spack package:
Versions:
8.10.3, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Link Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.1.4, 2.0.2, 1.5.2
Build Dependencies:
autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
master, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Link Dependencies:
cuda, boost, dd4hep, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 0.9.2, 0.9.1
Build Dependencies:
exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, python, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0, xsdk-0.2.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
cuda, cmake, mpi, nccl, hwloc, ninja
Link Dependencies:
cuda, mpi, nccl, hwloc
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-setuptools, py-coilmq
Link Dependencies:
python
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
18.20, 18.19, 16.16
Build Dependencies:
cuda, zlib, flex, bison, netcdf-fortran, mpi
Link Dependencies:
cuda, zlib, netcdf-fortran, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. Note: The version number is composed of the Amber version (major) and the tools version (minor). A manual download is required for both Amber and Amber tools. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

amdblis

Homepage:
Spack package:
Versions:
2.2, 2.1
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
develop, master, 0.1.0
Build Dependencies:
numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Link Dependencies:
blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind. AMP can be used to build powerful and flexible multi-physics simulation algorithms from lightweight operator, solver, linear algebra, material database, discretization, and meshing components. The AMP design is meant to enable existing investments in application codes to be leveraged without having to adopt dramatically different data structures while developing new computational science applications. Application components are represented as discrete mathematical operators that only require a minimal interface and through operator composition the incremental development of complex parallel applications is enabled. AMP is meant to allow application domain scientists, computer scientists and mathematicians to simulate, collaborate, and conduct research on various aspects of massively parallel simulation algorithms.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amrex

Homepage:
Spack package:
Versions:
develop, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
cmake, mpi, sundials, python
Link Dependencies:
mpi, sundials
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
python, java
Link Dependencies:
python
Run Dependencies:
java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.5.0
Build Dependencies:
cmake, rocm-device-libs, hsakmt-roct, hsa-rocr-dev, comgr, mesa, py-setuptools, python, perl-data-dumper, awk, libelf, libffi
Link Dependencies:
mesa, libelf, libffi
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake, binutils, boost, activeharmony, ompt-openmp
Link Dependencies:
binutils, boost, activeharmony, ompt-openmp
Description:
Autonomic Performance Environment for eXascale (APEX).

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
0.2
Build Dependencies:
cmake, cuda, mpi, libunwind, python, py-mpi4py, py-sphinx
Link Dependencies:
cuda, mpi, libunwind, python
Run Dependencies:
py-mpi4py
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.0
Build Dependencies:
m4, autoconf, automake, libtool, valgrind
Link Dependencies:
valgrind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

argtable

Homepage:
Spack package:
Versions:
2-13
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm-forge

Homepage:
Spack package:
Versions:
19.0.4-19.0.4-Ubuntu-16.04-x86_64, 19.0.4-Ubuntu-16.04-aarch64, 19.0.4-Ubuntu-14.04-x86_64, 19.0.4-Suse-15-x86_64, 19.0.4-Suse-12-x86_64, 19.0.4-Suse-12-aarch64, 19.0.4-Suse-11-x86_64, 19.0.4-Redhat-7.4-aarch64, 19.0.4-Redhat-7.2-ppc64le, 19.0.4-Redhat-7.0-x86_64, 19.0.4-Redhat-6.0-x86_64, 19.0.3-Ubuntu-16.04-x86_64, 19.0.3-Ubuntu-16.04-aarch64, 19.0.3-Ubuntu-14.04-x86_64, 19.0.3-Suse-12-x86_64, 19.0.3-Suse-12-aarch64, 19.0.3-Suse-11-x86_64, 19.0.3-Redhat-7.4-aarch64, 19.0.3-Redhat-7.2-ppc64le, 19.0.3-Redhat-7.0-x86_64, 19.0.3-Redhat-6.0-x86_64
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray
Run Dependencies:
py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
8.6.9
Build Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl
Link Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
m4, autoconf, automake, libtool
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
aspell
Link Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
aspell
Link Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
aspell
Link Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
4.0.1
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake
Link Dependencies:
comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
m4, autoconf, automake, libtool, gettext, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Run Dependencies:
perl
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.69, 2.62, 2.59, 2.13
Build Dependencies:
m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Link Dependencies:
python
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Link Dependencies:
python
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.16.1
Build Dependencies:
m4, autoconf, automake, libtool, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, uncrustify
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, uncrustify
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack, python
Run Dependencies:
py-numpy, py-matplotlib
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

bash

Homepage:
Spack package:
Versions:
5.0, 4.4.12, 4.4, 4.3
Build Dependencies:
ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
util-linux, gettext, pkgconfig
Link Dependencies:
util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.0, 7.6.0, 7.4.4
Build Dependencies:
libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, python
Link Dependencies:
zlib
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Description:
Oracle Berkeley DB

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
autoconf, automake, libtool, m4, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
diffutils, m4, perl, help2man
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

blaspp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, blas
Link Dependencies:
cuda, blas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Description:
A filesystem benchmark tool that simulates a realistic load.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, zlib
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib
Run Dependencies:
py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-seq

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Description:
A Binary Decision Diagram library.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-setuptools
Link Dependencies:
python
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
3.0.1, 2.0.1
Build Dependencies:
python, blast-plus, hmmer, augustus
Link Dependencies:
python, blast-plus, hmmer, augustus
Run Dependencies:
python
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

cabana

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, kokkos-legacy, kokkos, mpi
Link Dependencies:
kokkos-legacy, kokkos, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cmake, boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
cairo, libsigcpp
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cmake, adiak, dyninst, papi, libpfm4, mpi, unwind, sosflow, python
Link Dependencies:
adiak, dyninst, papi, libpfm4, mpi, unwind, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack, python, matlab
Run Dependencies:
py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.7.0
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

casacore

Homepage:
Spack package:
Versions:
3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0-alpha2, 4.0-alpha1, 3.11.6, 3.11.5
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, mesa, glx
Link Dependencies:
python, mpi, gl, mesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ use case library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks.

catch2

Homepage:
Spack package:
Versions:
master, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elf, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains the Krell Institute contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

ccache

Homepage:
Spack package:
Versions:
3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
gperf, libxslt, zlib
Link Dependencies:
gperf, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.5, 2.4
Build Dependencies:
cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94h
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw, magics, libuuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw, magics, libuuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
3.0.0, 2.0.0, 1.0.0
Build Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
3.450, 3.420, 3.410, 3.370
Build Dependencies:
curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
0.7.0
Build Dependencies:
ncurses, readline
Link Dependencies:
ncurses, readline
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
autoconf, automake, libtool, m4, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chai

Homepage:
Spack package:
Versions:
develop, master, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
cuda, cmake, umpire, raja
Link Dependencies:
cuda, umpire, raja
Description:
Copy-hiding array interface for data migration between memory spaces

changa

Homepage:
Spack package:
Versions:
master, 3.4
Build Dependencies:
charmpp
Link Dependencies:
charmpp
Description:
ChaNGa (Charm N-body GrAvity solver) is a code to perform collisionless N-body simulations. It can perform cosmological simulations with periodic boundary conditions in comoving coordinates or simulations of isolated stellar systems. It also can include hydrodynamics using the Smooth Particle Hydrodynamics (SPH) technique. It uses a Barnes-Hut tree to calculate gravity, with hexadecapole expansion of nodes and Ewald summation for periodic forces. Timestepping is done with a leapfrog integrator with individual timesteps for each particle.

channelflow

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, eigen, fftw, mpi, hdf5, netcdf-c, boost
Link Dependencies:
eigen, fftw, mpi, hdf5, netcdf-c, boost
Description:
Channelflow is a software system for numerical analysis of the incompressible fluid flow in channel geometries, written in C++.

chapel

Homepage:
Spack package:
Versions:
1.20.0, 1.19.0, 1.18.0
Description:
Chapel is a modern programming language that is parallel, productive, portable, scalable and open-source.

charliecloud

Homepage:
Spack package:
Versions:
master, 0.19, 0.18
Build Dependencies:
m4, autoconf, automake, libtool, rsync, py-sphinx, py-sphinx-rtd-theme
Run Dependencies:
python, py-lark-parser, py-requests
Test Dependencies:
bats
Description:
Lightweight user-defined software stacks for HPC.

charmpp

Homepage:
Spack package:
Versions:
develop, 6.10.2, 6.10.1, 6.10.0, 6.9.0, 6.8.2, 6.8.1, 6.8.0, 6.7.1, 6.7.0, 6.6.1, 6.6.0, 6.5.1
Build Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Link Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Description:
Charm++ is a parallel programming framework in C++ supported by an adaptive runtime system, which enhances user productivity and allows programs to run portably from small multicore computers (your laptop) to the largest supercomputers.

chatterbug

Homepage:
Spack package:
Versions:
develop, 1.0
Build Dependencies:
mpi, scorep
Link Dependencies:
mpi, scorep
Description:
A suite of communication-intensive proxy applications that mimic commonly found communication patterns in HPC codes. These codes can be used as synthetic codes for benchmarking, or for trace generation using Score-P / OTF2.

check

Homepage:
Spack package:
Versions:
0.12.0, 0.11.0, 0.10.0
Description:
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

chgcentre

Homepage:
Spack package:
Versions:
1.6
Build Dependencies:
cmake, casacore, gsl
Link Dependencies:
casacore, gsl
Description:
The chgcentre tool can be used to change the phase centre of a measurement set.

chill

Homepage:
Spack package:
Versions:
master, 0.3
Build Dependencies:
boost, rose, autoconf, automake, libtool, m4, iegenlib, bison, flex, python, isl, gmp
Link Dependencies:
python
Run Dependencies:
rose, iegenlib
Description:
A polyheadral compiler for autotuning

chlorop

Homepage:
Spack package:
Versions:
1.1
Run Dependencies:
awk
Description:
Chlorop predicts the presence of chloroplast transit peptides in protein sequences and the location of potential cTP cleavage sites. You will need to obtain the tarball by visiting the URL and completing the form. You can then either run spack install with the tarball in the directory, or add it to a mirror. You will need to set the CHLOROTMP environment variable to the full path of the directory you want chlorop to use as a temporary directory.

chombo

Homepage:
Spack package:
Versions:
develop, 3.2
Build Dependencies:
blas, lapack, gmake, mpi, hdf5
Link Dependencies:
blas, lapack, mpi, hdf5
Description:
The Chombo package provides a set of tools for implementing finite difference and finite-volume methods for the solution of partial differential equations on block-structured adaptively refined logically rectangular (i.e. Cartesian) grids.

chrony

Homepage:
Spack package:
Versions:
3.5.1, 3.5, 3.4, 3.3
Build Dependencies:
ruby-asciidoctor
Link Dependencies:
ruby-asciidoctor
Description:
chrony is a versatile implementation of the Network Time Protocol (NTP). It can synchronise the system clock with NTP servers, reference clocks(e.g. GPS receiver), and manual input using wristwatch and keyboard.

chrpath

Homepage:
Spack package:
Versions:
0.16
Description:
chrpath: Modifies the dynamic library load path (rpath and runpath) of compiled programs and libraries.

cinch

Homepage:
Spack package:
Versions:
master, 1.0
Description:
Cinch is a set of utilities and configuration options designed to make cmake builds easy to use and manage.

cistem

Homepage:
Spack package:
Versions:
1.0.0-beta
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

citcoms

Homepage:
Spack package:
Versions:
master, 3.3.1, 3.2.0
Build Dependencies:
mpi, zlib, automake, autoconf, libtool, m4, hc, cuda, hdf5
Link Dependencies:
mpi, zlib, hc, cuda, hdf5
Run Dependencies:
python
Description:
CitcomS is a finite element code designed to solve compressible thermochemical convection problems relevant to Earth's mantle.

cityhash

Homepage:
Spack package:
Versions:
master, 2013-07-31
Description:
CityHash, a family of hash functions for strings.

ck

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
CK calculates class-level and metric-level code metrics in Java projects by means of static analysis (i.e. no need for compiled code).

clamav

Homepage:
Spack package:
Versions:
0.101.2
Build Dependencies:
pkgconfig, json-c, openssl, pcre, yara, zlib, bzip2
Link Dependencies:
json-c, openssl, pcre, yara, zlib, bzip2, curl
Description:
Open source antivirus engine for detecting trojans, viruses, malware & other malicious threats.

clamr

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, mpi, mpe
Link Dependencies:
cmake, mpi, mpe
Description:
The CLAMR code is a cell-based adaptive mesh refinement (AMR) mini-app developed as a testbed for hybrid algorithm development using MPI and OpenCL GPU code.

clapack

Homepage:
Spack package:
Versions:
3.2.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CLAPACK is a f2c'ed version of LAPACK. The CLAPACK library was built using a Fortran to C conversion utility called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain C code, and then modified to improve readability. CLAPACK's goal is to provide LAPACK for someone who does not have access to a Fortran compiler.

clara

Homepage:
Spack package:
Versions:
1.1.5, 1.1.4, 1.1.3, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
A simple to use, composable, command line parser for C++ 11 and beyond.

claw

Homepage:
Spack package:
Versions:
master, 2.0.2, 2.0.1, 2.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0
Build Dependencies:
cmake, ant, bison, flex, java, libxml2
Link Dependencies:
java, libxml2
Description:
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran. From a single source code, it generates architecture specific code decorated with OpenMP or OpenACC

cleaveland4

Homepage:
Spack package:
Versions:
4.4
Build Dependencies:
perl, perl-math-cdf, bowtie, viennarna, r, samtools
Link Dependencies:
bowtie, viennarna, samtools
Run Dependencies:
perl, perl-math-cdf, r
Description:
CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

cleverleaf

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, samrai, hdf5, boost
Link Dependencies:
samrai, hdf5, boost
Description:
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National Laboratory. The primary goal of CleverLeaf is to evaluate the application of AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.

clfft

Homepage:
Spack package:
Versions:
2.12.2
Build Dependencies:
cmake, opencl, boost
Link Dependencies:
opencl, boost
Description:
a software library containing FFT functions written in OpenCL

clhep

Homepage:
Spack package:
Versions:
2.4.1.3, 2.4.1.2, 2.4.1.0, 2.4.0.4, 2.4.0.2, 2.4.0.1, 2.4.0.0, 2.3.4.6, 2.3.4.5, 2.3.4.4, 2.3.4.3, 2.3.4.2, 2.3.3.2, 2.3.3.1, 2.3.3.0, 2.3.2.2, 2.3.1.1, 2.3.1.0, 2.3.0.0, 2.2.0.8, 2.2.0.5, 2.2.0.4
Build Dependencies:
cmake
Description:
CLHEP is a C++ Class Library for High Energy Physics.

clinfo

Homepage:
Spack package:
Versions:
2.2.18.04.06
Build Dependencies:
opencl
Link Dependencies:
opencl
Description:
Print all known information about all available OpenCL platforms and devices in the system.

clingo

Homepage:
Spack package:
Versions:
develop, 5.4.0, 5.3.0, 5.2.2
Build Dependencies:
cmake, doxygen, re2c, bison, python
Link Dependencies:
python
Run Dependencies:
python
Description:
Clingo: A grounder and solver for logic programs Clingo is part of the Potassco project for Answer Set Programming (ASP). ASP offers a simple and powerful modeling language to describe combinatorial problems as logic programs. The clingo system then takes such a logic program and computes answer sets representing solutions to the given problem.

cln

Homepage:
Spack package:
Versions:
1.3.6, 1.3.5, 1.3.4, 1.3.3, 1.3.2, 1.3.1, 1.3.0, 1.2.2, 1.2.1, 1.2.0
Build Dependencies:
autoconf, automake, libtool, m4
Description:
CLN is a library for efficient computations with all kinds of numbers in arbitrary precision. It features number classes for unlimited length integers, rationals, arbitrary precision floating point numbers and much more.

cloc

Homepage:
Spack package:
Versions:
1.84, 1.80, 1.74
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Count, or compute differences of, physical lines of source code in the given files (may be archives such as compressed tarballs or zip files) and/or recursively below the given directories.

cloog

Homepage:
Spack package:
Versions:
0.18.1, 0.18.0, 0.17.0
Build Dependencies:
gmp, isl
Link Dependencies:
gmp, isl
Description:
CLooG is a free software and library to generate code for scanning Z-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that reaches each integral point of one or more parameterized polyhedra.

cloverleaf

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
mpi, cuda
Link Dependencies:
mpi, cuda
Description:
Proxy Application. CloverLeaf is a miniapp that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

cloverleaf3d

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CloverLeaf3D is 3D version of the CloverLeaf mini- app. CloverLeaf is a mini-app that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

clp

Homepage:
Spack package:
Versions:
1.16.11
Description:
Clp (Coin-or linear programming) is an open-source linear programming solver written in C++.

clustal-omega

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
argtable
Link Dependencies:
argtable
Description:
Clustal Omega: the last alignment program you'll ever need.

clustalw

Homepage:
Spack package:
Versions:
2.1
Description:
Multiple alignment of nucleic acid and protein sequences.

cmake

Homepage:
Spack package:
Versions:
3.18.2, 3.18.1, 3.18.0, 3.17.4, 3.17.3, 3.17.1, 3.17.0, 3.16.8, 3.16.7, 3.16.6, 3.16.5, 3.16.4, 3.16.3, 3.16.2, 3.16.1, 3.16.0, 3.15.7, 3.15.6, 3.15.5, 3.15.4, 3.15.3, 3.15.2, 3.15.1, 3.15.0, 3.14.7, 3.14.6, 3.14.5, 3.14.4, 3.14.3, 3.14.2, 3.14.1, 3.14.0, 3.13.5, 3.13.4, 3.13.3, 3.13.2, 3.13.1, 3.13.0, 3.12.4, 3.12.3, 3.12.2, 3.12.1, 3.12.0, 3.11.4, 3.11.3, 3.11.2, 3.11.1, 3.11.0, 3.10.3, 3.10.2, 3.10.1, 3.10.0, 3.9.6, 3.9.4, 3.9.2, 3.9.0, 3.8.2, 3.8.1, 3.8.0, 3.7.2, 3.7.1, 3.6.1, 3.6.0, 3.5.2, 3.5.1, 3.5.0, 3.4.3, 3.4.0, 3.3.1, 3.1.0, 3.0.2, 2.8.10.2
Build Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, python, py-sphinx, openssl, ncurses
Link Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, openssl, ncurses
Description:
A cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

cmaq

Homepage:
Spack package:
Versions:
5.3.1, 5.3
Description:
Code base for the U.S. EPA's Community Multiscale Air Quality Model (CMAQ).

cminpack

Homepage:
Spack package:
Versions:
master, 1.3.6
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
This is a C version of the minpack minimization package. Minpack includes software for solving nonlinear equations and nonlinear least squares problems.

cmocka

Homepage:
Spack package:
Versions:
1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
Unit-testing framework in pure C

cmockery

Homepage:
Spack package:
Versions:
0.1.2, 0.1.1, 0.1.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
A lightweight library to simplify and generalize the process of writing unit tests for C applications.

cmor

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2
Build Dependencies:
uuid, netcdf-c, udunits, hdf5, python, py-numpy
Link Dependencies:
uuid, netcdf-c, udunits, hdf5, python
Run Dependencies:
py-numpy
Description:
Climate Model Output Rewriter is used to produce CF-compliant netCDF files. The structure of the files created by the library and the metadata they contain fulfill the requirements of many of the climate community's standard model experiments.

cnmem

Homepage:
Spack package:
Versions:
git
Build Dependencies:
cmake
Description:
CNMem mempool for CUDA devices

cnpy

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
cnpy: library to read/write .npy and .npz files in C/C++.

cntk

Homepage:
Spack package:
Versions:
master, 2.0
Build Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Link Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Description:
The Microsoft Cognitive Toolkit is a unified deep-learning toolkit that describes neural networks as a series of computational steps via a directed graph.

cntk1bitsgd

Homepage:
Spack package:
Versions:
master, c8b77d
Description:
CNTK1bitSGD is the header-only 1-bit stochastic gradient descent (1bit- SGD) library for the Computational Network Toolkit (CNTK).

cnvnator

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Link Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Description:
A tool for CNV discovery and genotyping from depth-of-coverage by mapped reads.

codar-cheetah

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0, 0.5
Build Dependencies:
python
Link Dependencies:
python
Run Dependencies:
python
Description:
CODAR Cheetah: The CODAR Experiment Harness for Exascale science applications.

codec2

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
cmake
Description:
Open source speech codec designed for communications quality speech between 450 and 3200 bit/s. The main application is low bandwidth HF/VHF digital radio.

codes

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0
Build Dependencies:
autoconf, automake, libtool, m4, pkgconfig, bison, flex, mpi, ross, sst-dumpi
Link Dependencies:
mpi, ross, sst-dumpi
Description:
CO-Design of multi-layer Exascale Storage (CODES) simulation framework

coevp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
mpi, silo, flann, lapack
Link Dependencies:
mpi, silo, flann, lapack
Description:
CoEVP is a scale-bridging proxy application for embedded viscoplasticity applications. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. Due to the size and complexity of the studied models, as well as restrictions on distribution, the currently available LULESH proxy application provides the coarse-scale model implementation and the ASPA proxy application provides the adaptive sampling support.

cohmm

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
gnuplot
Link Dependencies:
gnuplot
Description:
An anticipated important use-case for next-generation supercomputing is multiscale modeling, in which continuum equations for large-scale material deformation are augmented with high-fidelity, fine-scale simulations that provide constitutive data on demand.

coin3d

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.0.0
Build Dependencies:
boost, doxygen, perl
Link Dependencies:
openglu, opengl, libsm, libxext, libice, libuuid, libxcb, libxau
Description:
Coin is an OpenGL-based, 3D graphics library that has its roots in the Open Inventor 2.1 API, which Coin still is compatible with.

coinhsl

Homepage:
Spack package:
Versions:
2015.06.23, 2014.01.17, 2014.01.10
Build Dependencies:
blas
Link Dependencies:
blas
Description:
CoinHSL is a collection of linear algebra libraries (KB22, MA27, MA28, MA54, MA57, MA64, MA77, MA86, MA97, MC19, MC34, MC64, MC68, MC69, MC78, MC80, OF01, ZB01, ZB11) bundled for use with IPOPT and other applications that use these HSL routines. Note: CoinHSL is licensed software. You will need to request a license from Research Councils UK and download a .tar.gz archive of CoinHSL yourself. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

collectd

Homepage:
Spack package:
Versions:
5.11.0, 5.10.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
The system statistics collection daemon.

collier

Homepage:
Spack package:
Versions:
1.2.5, 1.2.4, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1, 1.0
Build Dependencies:
cmake
Description:
COLLIER: A Complex One-Loop LIbrary with Extended Regularizations

colm

Homepage:
Spack package:
Versions:
0.12.0
Description:
Colm Programming Language Colm is a programming language designed for the analysis and transformation of computer languages. Colm is influenced primarily by TXL. It is in the family of program transformation languages.

colordiff

Homepage:
Spack package:
Versions:
1.0.19, 1.0.18
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Colorful diff utility.

comd

Homepage:
Spack package:
Versions:
develop, 1.1
Build Dependencies:
mpi, graphviz
Link Dependencies:
mpi, graphviz
Description:
CoMD is a reference implementation of classical molecular dynamics algorithms and workloads as used in materials science. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. New versions of CoMD will be released to incorporate the lessons learned from the co-design process.

comgr

Homepage:
Spack package:
Versions:
3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, llvm-amdgpu, rocm-device-libs, rocm-cmake
Link Dependencies:
zlib, z3, ncurses
Description:
This provides various Lightning Compiler related services. It currently contains one library, the Code Object Manager (Comgr)

commons-lang

Homepage:
Spack package:
Versions:
2.6, 2.4
Build Dependencies:
jdk
Link Dependencies:
jdk
Run Dependencies:
java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-lang3

Homepage:
Spack package:
Versions:
3.7
Build Dependencies:
jdk
Link Dependencies:
jdk
Run Dependencies:
java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-logging

Homepage:
Spack package:
Versions:
1.2, 1.1.3, 1.1.1
Build Dependencies:
jdk
Link Dependencies:
jdk
Run Dependencies:
java
Description:
When writing a library it is very useful to log information. However there are many logging implementations out there, and a library cannot impose the use of a particular one on the overall application that the library is a part of. The Logging package is an ultra-thin bridge between different logging implementations. A library that uses the commons-logging API can be used with any logging implementation at runtime. Commons-logging comes with support for a number of popular logging implementations, and writing adapters for others is a reasonably simple task.

compiz

Homepage:
Spack package:
Versions:
0.7.8
Build Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Link Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Description:
compiz - OpenGL window and compositing manager. Compiz is an OpenGL compositing manager that use GLX_EXT_texture_from_pixmap for binding redirected top-level windows to texture objects. It has a flexible plug- in system and it is designed to run well on most graphics hardware.

compositeproto

Homepage:
Spack package:
Versions:
0.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Composite Extension. This package contains header files and documentation for the composite extension. Library and server implementations are separate.

conda4aarch64

Homepage:
Spack package:
Versions:
1.0.0
Description:
Conda for aarch64

conduit

Homepage:
Spack package:
Versions:
master, 0.5.1, 0.5.0, 0.4.0, 0.3.1, 0.3.0, 0.2.1, 0.2.0
Build Dependencies:
cmake, python, py-numpy, py-mpi4py, hdf5, silo, adios, zfp, mpi, py-sphinx, py-sphinx-rtd-theme, doxygen
Link Dependencies:
python, hdf5, silo, adios, zfp, mpi, doxygen
Run Dependencies:
py-numpy, py-mpi4py
Description:
Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. It is used for data coupling between packages in-core, serialization, and I/O tasks.

connect-proxy

Homepage:
Spack package:
Versions:
1.105
Description:
`connect.c` is a simple relaying command to make network connection via SOCKS and https proxy

constype

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
pkgconfig, util-macros
Description:
constype prints on the standard output the Sun code for the type of display that the specified device is. It was originally written for SunOS, but has been ported to other SPARC OS'es and to Solaris on both SPARC & x86.

consul

Homepage:
Spack package:
Versions:
1.8.1, 1.8.0, 1.7.6
Build Dependencies:
go
Link Dependencies:
go
Description:
Consul is a distributed, highly available, and data center aware solution to connect and configure applications across dynamic, distributed infrastructure.

converge

Homepage:
Spack package:
Versions:
2.4.10, 2.3.23, 2.2.0, 2.1.0, 2.0.0
Build Dependencies:
mpi, openmpi
Link Dependencies:
mpi, openmpi
Description:
CONVERGE is a revolutionary computational fluid dynamics (CFD) program that eliminates the grid generation bottleneck from the simulation process. CONVERGE was developed by engine simulation experts and is straightforward to use for both engine and non-engine simulations. Unlike many CFD programs, CONVERGE automatically generates a perfectly orthogonal, structured grid at runtime based on simple, user-defined grid control parameters. This grid generation method completely eliminates the need to manually generate a grid. In addition, CONVERGE offers many other features to expedite the setup process and to ensure that your simulations are as computationally efficient as possible.

corenlp

Homepage:
Spack package:
Versions:
4.0.0
Build Dependencies:
ant
Description:
Stanford CoreNLP provides a set of human language technology tools. It can give the base forms of words, their parts of speech, whether they are names of companies, people, etc., normalize dates, times, and numeric quantities, mark up the structure of sentences in terms of phrases and syntactic dependencies, indicate which noun phrases refer to the same entities, indicate sentiment, extract particular or open-class relations between entity mentions, get the quotes people said, etc.

coreutils

Homepage:
Spack package:
Versions:
8.31, 8.30, 8.29, 8.26, 8.23
Description:
The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system.

corset

Homepage:
Spack package:
Versions:
1.06
Description:
Corset is a command-line software program to go from a de novo transcriptome assembly to gene-level counts.

cosbench

Homepage:
Spack package:
Versions:
0.4.2, 0.4.1.0, 0.4.0.1
Run Dependencies:
java, curl
Description:
COSBench is a benchmarking tool to measure the performance of Cloud Object Storage services. Object storage is an emerging technology that is different from traditional file systems (e.g., NFS) or block device systems (e.g., iSCSI). Amazon S3 and Openstack* swift are well-known object storage solutions

cosma

Homepage:
Spack package:
Versions:
master, 2.2.0, 2.0.7, 2.0.2
Build Dependencies:
cuda, cmake, mpi, blas, scalapack
Link Dependencies:
cuda, mpi, blas, scalapack
Description:
Distributed Communication-Optimal Matrix-Matrix Multiplication Library

cosmoflow-benchmark

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cuda, python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Link Dependencies:
cuda
Run Dependencies:
python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Description:
This is a an implementation of the CosmoFlow 3D convolutional neural network for benchmarking. It is written in TensorFlow with the Keras API and uses Horovod for distributed training.

cosmomc

Homepage:
Spack package:
Versions:
2016.11, 2016.06
Build Dependencies:
python, mpi, planck-likelihood, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Link Dependencies:
python, mpi, planck-likelihood
Run Dependencies:
python, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Description:
CosmoMC is a Fortran 2008 Markov-Chain Monte-Carlo (MCMC) engine for exploring cosmological parameter space, together with Fortran and python code for analysing Monte-Carlo samples and importance sampling (plus a suite of scripts for building grids of runs, plotting and presenting results).

cosp2

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CoSP2 represents a sparse linear algebra parallel algorithm for calculating the density matrix in electronic tructure theory. The algorithm is based on a recursive second-order Fermi- Operator expansion method (SP2) and is tailored for density functional based tight-binding calculations of non-metallic systems.

cotter

Homepage:
Spack package:
Versions:
master, 20190205
Build Dependencies:
cmake, erfa, pal, aoflagger
Link Dependencies:
erfa, pal, aoflagger
Description:
Andre Offringa's cotter pre-processing pipeline.

couchdb

Homepage:
Spack package:
Versions:
3.1.0, 3.0.1, 3.0.0
Build Dependencies:
icu4c, openssl, curl, node-js, mozjs, gmake, help2man, python, erlang
Link Dependencies:
icu4c, openssl, curl, node-js, mozjs
Run Dependencies:
python, erlang
Description:
A CouchDB server hosts named databases, which store documents. Each document is uniquely named in the database, and CouchDB provides a RESTful HTTP API for reading and updating (add, edit, delete) database documents.

cowsay

Homepage:
Spack package:
Versions:
3.04
Run Dependencies:
perl
Description:
A program that generates ASCII pictures of a cow with a message.

cp2k

Homepage:
Spack package:
Versions:
master, 7.1, 6.1, 5.1, 4.1, 3.0
Build Dependencies:
cuda, python, blas, lapack, fftw-api, libxsmm, pkgconfig, libint, libxc, mpi, scalapack, cosma, elpa, plumed, pexsi, sirius, py-numpy, wannier90
Link Dependencies:
cuda, blas, lapack, fftw-api, libxsmm, libint, libxc, mpi, scalapack, cosma, elpa, plumed, pexsi, sirius
Description:
CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems

cpio

Homepage:
Spack package:
Versions:
2.13
Description:
GNU cpio copies files into or out of a cpio or tar archive. The archive can be another file on the disk, a magnetic tape, or a pipe.

cpp-httplib

Homepage:
Spack package:
Versions:
0.5.9, 0.5.8, 0.5.7, 0.5.6, 0.5.5, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.4.2, 0.3.3, 0.2.6, 0.2.1
Build Dependencies:
cmake
Description:
A C++ header-only HTTP/HTTPS server and client library.

cppad

Homepage:
Spack package:
Versions:
develop, 20170114
Build Dependencies:
cmake
Description:
A Package for Differentiation of C++ Algorithms.

cppcheck

Homepage:
Spack package:
Versions:
2.1, 1.87, 1.81, 1.78, 1.72, 1.68
Run Dependencies:
py-pygments
Description:
A tool for static C/C++ code analysis.

cppgsl

Homepage:
Spack package:
Versions:
master, 2.1.0, 2.0.0, 1.0.0
Build Dependencies:
cmake
Description:
C++ Guideline Support Library

cpprestsdk

Homepage:
Spack package:
Versions:
2.10.16, 2.9.1
Build Dependencies:
cmake, boost, openssl
Link Dependencies:
boost, openssl
Description:
The C++ REST SDK is a Microsoft project for cloud-based client-server communication in native code using a modern asynchronous C++ API design. This project aims to help C++ developers connect to and interact with services.

cppunit

Homepage:
Spack package:
Versions:
1.14.0, 1.13.2
Description:
Obsolete Unit testing framework for C++

cppzmq

Homepage:
Spack package:
Versions:
master, 4.6.0, 4.5.0, 4.4.1, 4.4.0, 4.3.0, 4.2.3, 4.2.2
Build Dependencies:
cmake, libzmq
Link Dependencies:
libzmq
Description:
C++ binding for 0MQ

cpu-features

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake
Description:
A cross platform C99 library to get cpu features at runtime.

cpuinfo

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Description:
cpuinfo is a library to detect essential for performance optimization information about host CPU.

cquery

Homepage:
Spack package:
Versions:
2018-08-23
Build Dependencies:
cmake, llvm
Link Dependencies:
llvm
Description:
a C++ header-only library for Nearest Neighbor (NN) search wih KD-trees.

cracklib

Homepage:
Spack package:
Versions:
2.9.7, 2.9.6, 2.9.5
Build Dependencies:
python, gettext, fmt, zlib
Link Dependencies:
gettext, fmt, zlib
Run Dependencies:
python
Description:
CrackLib tests passwords to determine whether they match certain security-oriented characteristics, with the purpose of stopping users from choosing passwords that are easy to guess.

cradl

Homepage:
Spack package:
Versions:
master
Build Dependencies:
py-pandas, py-torch, py-torchvision, py-apex, py-gputil, py-matplotlib, py-mpi4py
Link Dependencies:
py-pandas, py-torch, py-torchvision, py-apex, py-gputil, py-matplotlib, py-mpi4py
Description:
The CRADL proxy application captured performance metrics during inference on data from multiphysics codes, specifically ALE hydrodynamics codes.

cram

Homepage:
Spack package:
Versions:
1.0.1
Build Dependencies:
cmake, python, mpi
Link Dependencies:
python, mpi
Description:
Cram runs many small MPI jobs inside one large MPI job.

cray-libsci

Homepage:
Spack package:
Versions:
18.11.1.2, 16.11.1, 16.09.1, 16.07.1, 16.06.1, 16.03.1
Description:
The Cray Scientific Libraries package, LibSci, is a collection of numerical routines optimized for best performance on Cray systems.

cromwell

Homepage:
Spack package:
Versions:
44
Run Dependencies:
java
Description:
Cromwell is a Workflow Management System geared towards scientific workflows.

cromwell-womtool

Homepage:
Spack package:
Versions:
44
Run Dependencies:
java
Description:
Command line utilities for interacting with the Workflow Object Model (WOM).

cronie

Homepage:
Spack package:
Versions:
1.5.5
Description:
Cronie contains the standard UNIX daemon crond that runs specified programs at scheduled times and related tools.

cryptopp

Homepage:
Spack package:
Versions:
7.0.0, 6.1.0, 6.0.0, 5.6.5, 5.6.4, 5.6.3, 5.6.2, 5.6.1
Build Dependencies:
gmake
Description:
Crypto++ is an open-source C++ library of cryptographic schemes. The library supports a number of different cryptography algorithms, including authenticated encryption schemes (GCM, CCM), hash functions (SHA-1, SHA2), public-key encryption (RSA, DSA), and a few obsolete/historical encryption algorithms (MD5, Panama).

cryptsetup

Homepage:
Spack package:
Versions:
2.3.1, 2.2.3, 2.2.2, 2.2.1
Build Dependencies:
libuuid, lvm2, popt, json-c, util-linux, gettext, pkgconfig, autoconf, automake, libtool, m4, openssl
Link Dependencies:
libuuid, lvm2, popt, json-c, util-linux, gettext, openssl
Description:
Cryptsetup and LUKS - open-source disk encryption.

csa-c

Homepage:
Spack package:
Versions:
master
Description:
csa: Cubic Spline Approximation. csa is a C code for cubic spline approximation of 2D scattered data. It provides a C library and a command line utility csabathy.

cscope

Homepage:
Spack package:
Versions:
15.9, 15.8b
Build Dependencies:
ncurses, flex, bison, pkgconfig
Link Dependencies:
ncurses
Description:
Cscope is a developer's tool for browsing source code.

csdp

Homepage:
Spack package:
Versions:
6.1.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CSDP is a library of routines that implements a predictor corrector variant of the semidefinite programming algorithm of Helmberg, Rendl, Vanderbei, and Wolkowicz

ctffind

Homepage:
Spack package:
Versions:
4.1.8
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
Fast and accurate defocus estimation from electron micrographs.

ctpl

Homepage:
Spack package:
Versions:
0.3
Build Dependencies:
autoconf, automake, libtool, m4, gtk-doc, glib
Link Dependencies:
gtk-doc, glib
Description:
CTPL is a template engine library written in C and distributed under the terms of the GNU GPL.

ctre

Homepage:
Spack package:
Versions:
master, 2.8.4, 2.8.3, 2.8.2, 2.8.1, 2.8, 2.7, 2.6.4, 2.6.3, 2.6.2, 2.6.1
Build Dependencies:
cmake
Description:
Compile time regular expressions for C++

cub

Homepage:
Spack package:
Versions:
1.9.10, 1.9.9, 1.9.8-1, 1.9.8, 1.8.0, 1.7.5, 1.7.4, 1.7.3, 1.7.2, 1.7.1
Description:
CUB is a C++ header library of cooperative threadblock primitives and other utilities for CUDA kernel programming.

cube

Homepage:
Spack package:
Versions:
4.5, 4.4.4, 4.4.3, 4.4.2, 4.4, 4.3.5, 4.3.4, 4.3.3, 4.2.3
Build Dependencies:
cubelib, pkgconfig, dbus, zlib, qt
Link Dependencies:
cubelib, dbus, zlib, qt
Description:
Cube the profile viewer for Score-P and Scalasca profiles. It displays a multi-dimensional performance space consisting of the dimensions: - performance metric - call path - system resource

cubelib

Homepage:
Spack package:
Versions:
4.5, 4.4.4, 4.4.3, 4.4.2, 4.4
Build Dependencies:
pkgconfig, zlib
Link Dependencies:
zlib
Description:
Component of CubeBundle: General purpose C++ library and tools

cubew

Homepage:
Spack package:
Versions:
4.5, 4.4.3, 4.4.2, 4.4.1, 4.4
Build Dependencies:
pkgconfig, zlib
Link Dependencies:
zlib
Description:
Component of CubeBundle: High performance C Writer library

cubist

Homepage:
Spack package:
Versions:
2.07
Description:
Cubist is a powerful tool for generating rule-based models that balance the need for accurate prediction against the requirements of intelligibility. Cubist models generally give better results than those produced by simple techniques such as multivariate linear regression, while also being easier to understand than neural networks.

cuda

Homepage:
Spack package:
Versions:
11.0.2, 10.2.89, 10.1.243, 10.0.130, 9.2.88, 9.1.85, 9.0.176, 8.0.61, 8.0.44, 7.5.18, 6.5.14
Build Dependencies:
libxml2
Link Dependencies:
libxml2
Description:
CUDA is a parallel computing platform and programming model invented by NVIDIA. It enables dramatic increases in computing performance by harnessing the power of the graphics processing unit (GPU). Note: This package does not currently install the drivers necessary to run CUDA. These will need to be installed manually. See: https://docs.nvidia.com/cuda/ for details.

cuda-memtest

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, cuda
Link Dependencies:
cuda
Description:
Maintained and updated fork of cuda_memtest. original homepage: http://sourceforge.net/projects/cudagpumemtest . This software tests GPU memory for hardware errors and soft errors using CUDA or OpenCL.

cudnn

Homepage:
Spack package:
Versions:
8.0.3.33-11.0-linux-x64, 8.0.3.33-11.0-linux-ppc64le, 8.0.3.33-10.2-linux-x64, 8.0.3.33-10.2-linux-ppc64le, 8.0.3.33-10.1-linux-x64, 8.0.3.33-10.1-linux-ppc64le, 8.0.2.39-11.0-linux-x64, 8.0.2.39-11.0-linux-ppc64le, 8.0.2.39-10.2-linux-x64, 8.0.2.39-10.2-linux-ppc64le, 8.0.2.39-10.1-linux-x64, 8.0.2.39-10.1-linux-ppc64le, 8.0.0.180-11.0-linux-x64, 8.0.0.180-11.0-linux-ppc64le, 8.0.0.180-10.2-linux-x64, 8.0.0.180-10.2-linux-ppc64le, 7.6.5.32-10.2-linux-x64, 7.6.5.32-10.2-linux-ppc64le, 7.6.5.32-10.1-osx-x64, 7.6.5.32-10.1-linux-x64, 7.6.5.32-10.1-linux-ppc64le, 7.6.5.32-10.0-osx-x64, 7.6.5.32-10.0-linux-x64, 7.6.5.32-10.0-linux-ppc64le, 7.6.5.32-9.2-linux-x64, 7.6.5.32-9.2-linux-ppc64le, 7.6.5.32-9.0-linux-x64, 7.6.4.38-10.1-osx-x64, 7.6.4.38-10.1-linux-x64, 7.6.4.38-10.1-linux-ppc64le, 7.6.4.38-10.0-osx-x64, 7.6.4.38-10.0-linux-x64, 7.6.4.38-10.0-linux-ppc64le, 7.6.4.38-9.2-linux-x64, 7.6.4.38-9.2-linux-ppc64le, 7.6.4.38-9.0-linux-x64, 7.6.3.30-10.1-linux-x64, 7.6.3.30-10.1-linux-ppc64le, 7.5.1.10-10.1-linux-x64, 7.5.1.10-10.1-linux-ppc64le, 7.5.1.10-10.0-linux-x64, 7.5.1.10-10.0-linux-ppc64le, 7.5.0.56-10.1-linux-x64, 7.5.0.56-10.1-linux-ppc64le, 7.5.0.56-10.0-linux-x64, 7.5.0.56-10.0-linux-ppc64le, 7.3.0.29-9.0-linux-x64, 7.2.1.38-9.0-linux-x64, 7.1.3-9.1-linux-x64, 7.1.3-9.1-linux-ppc64le, 6.0-8.0-linux-x64, 5.1-8.0-linux-x64
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
NVIDIA cuDNN is a GPU-accelerated library of primitives for deep neural networks

cunit

Homepage:
Spack package:
Versions:
2.1-3
Build Dependencies:
autoconf, automake, libtool, m4
Description:
Automated testing framework for 'C'.

cups

Homepage:
Spack package:
Versions:
2.2.3
Build Dependencies:
gnutls
Link Dependencies:
gnutls
Description:
CUPS is the standards-based, open source printing system developed by Apple Inc. for macOS and other UNIX-like operating systems. CUPS uses the Internet Printing Protocol (IPP) to support printing to local and network printers. This provides the core CUPS libraries, not a complete CUPS install.

curl

Homepage:
Spack package:
Versions:
7.72.0, 7.71.0, 7.68.0, 7.63.0, 7.60.0, 7.59.0, 7.56.0, 7.54.0, 7.53.1, 7.52.1, 7.50.3, 7.50.2, 7.50.1, 7.49.1, 7.47.1, 7.46.0, 7.45.0, 7.44.0, 7.43.0, 7.42.1
Build Dependencies:
openssl, libidn2, zlib, nghttp2, libssh2, libssh, krb5
Link Dependencies:
openssl, libidn2, zlib, nghttp2, libssh2, libssh, krb5
Description:
cURL is an open source command line tool and library for transferring data with URL syntax

cvs

Homepage:
Spack package:
Versions:
1.12.13
Description:
CVS a very traditional source control system

cxxopts

Homepage:
Spack package:
Versions:
2.2.0, 2.1.2, 2.1.1, 2.1.0, 2.0.0, 1.4.4, 1.4.3, 1.4.2, 1.4.1, 1.4.0
Build Dependencies:
cmake, icu4c
Link Dependencies:
icu4c
Description:
Lightweight C++ command line option parser

cyrus-sasl

Homepage:
Spack package:
Versions:
2.1.27, 2.1.26, 2.1.25, 2.1.24, 2.1.23
Build Dependencies:
m4, autoconf, automake, libtool
Description:
This is the Cyrus SASL API implementation. It can be used on the client or server side to provide authentication and authorization services.

czmq

Homepage:
Spack package:
Versions:
4.1.1, 4.0.2, 3.0.2
Build Dependencies:
libtool, automake, autoconf, pkgconfig, libuuid, libzmq
Link Dependencies:
libuuid, libzmq
Description:
A C interface to the ZMQ library

dakota

Homepage:
Spack package:
Versions:
6.12, 6.9, 6.3
Build Dependencies:
cmake, netlib-lapack, blas, mpi, python, boost
Link Dependencies:
netlib-lapack, blas, mpi, python, boost
Description:
The Dakota toolkit provides a flexible, extensible interface between analysis codes and iterative systems analysis methods. Dakota contains algorithms for: - optimization with gradient and non gradient-based methods; - uncertainty quantification with sampling, reliability, stochastic - expansion, and epistemic methods; - parameter estimation with nonlinear least squares methods; - sensitivity/variance analysis with design of experiments and - parameter study methods. These capabilities may be used on their own or as components within advanced strategies such as hybrid optimization, surrogate-based optimization, mixed integer nonlinear programming, or optimization under uncertainty.

daligner

Homepage:
Spack package:
Versions:
1.0
Description:
Daligner: The Dazzler "Overlap" Module.

damageproto

Homepage:
Spack package:
Versions:
1.2.1
Build Dependencies:
pkgconfig, util-macros
Description:
X Damage Extension. This package contains header files and documentation for the X Damage extension. Library and server implementations are separate.

damaris

Homepage:
Spack package:
Versions:
master, 1.3.1
Build Dependencies:
cmake, mpi, boost, xsd, xerces-c, hdf5, catalyst, visit
Link Dependencies:
mpi, boost, xsd, xerces-c, hdf5, catalyst, visit
Description:
Damaris is a middleware for I/O and in situ analytics targeting large- scale, MPI-based HPC simulations.

damselfly

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Damselfly is a model-based parallel network simulator.

darshan-runtime

Homepage:
Spack package:
Versions:
develop, 3.2.1, 3.2.0, 3.1.8, 3.1.7, 3.1.6, 3.1.0, 3.0.0
Build Dependencies:
mpi, zlib
Link Dependencies:
mpi, zlib
Description:
Darshan (runtime) is a scalable HPC I/O characterization tool designed to capture an accurate picture of application I/O behavior, including properties such as patterns of access within files, with minimum overhead. DarshanRuntime package should be installed on systems where you intend to instrument MPI applications.

darshan-util

Homepage:
Spack package:
Versions:
develop, 3.2.1, 3.2.0, 3.1.8, 3.1.7, 3.1.6, 3.1.0, 3.0.0
Build Dependencies:
zlib, bzip2
Link Dependencies:
zlib, bzip2
Run Dependencies:
bzip2
Description:
Darshan (util) is collection of tools for parsing and summarizing log files produced by Darshan (runtime) instrumentation. This package is typically installed on systems (front-end) where you intend to analyze log files produced by Darshan (runtime).

dash

Homepage:
Spack package:
Versions:
0.5.9.1
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
libedit
Description:
The Debian Almquist Shell.

datamash

Homepage:
Spack package:
Versions:
1.3, 1.1.0, 1.0.7, 1.0.6, 1.0.5
Description:
GNU datamash is a command-line program which performs basic numeric, textual and statistical operations on input textual data files.

dataspaces

Homepage:
Spack package:
Versions:
1.8.0, 1.6.2
Build Dependencies:
m4, automake, autoconf, libtool, mpi
Link Dependencies:
mpi
Description:
an extreme scale data management framework.

datatransferkit

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos
Link Dependencies:
trilinos
Description:
DataTransferKit is an open-source software library of parallel solution transfer services for multiphysics simulations

dateutils

Homepage:
Spack package:
Versions:
0.4.7, 0.4.6, 0.4.5
Description:
Dateutils are a bunch of tools that revolve around fiddling with dates and times in the command line with a strong focus on use cases that arise when dealing with large amounts of financial data.

davix

Homepage:
Spack package:
Versions:
0.7.5, 0.7.3, 0.6.9, 0.6.8
Build Dependencies:
cmake, pkgconfig, libxml2, libuuid, openssl
Link Dependencies:
libxml2, libuuid, openssl
Description:
High-performance file management over WebDAV/HTTP.

dbcsr

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, blas, lapack, mpi, libxsmm, py-fypp, pkgconfig, python, ninja
Link Dependencies:
cuda, blas, lapack, mpi, libxsmm
Description:
Distributed Block Compressed Sparse Row matrix library.

dbus

Homepage:
Spack package:
Versions:
1.12.8, 1.11.2, 1.9.0, 1.8.8, 1.8.6, 1.8.4, 1.8.2
Build Dependencies:
pkgconfig, expat, glib, libsm
Link Dependencies:
expat, glib, libsm
Description:
D-Bus is a message bus system, a simple way for applications to talk to one another. D-Bus supplies both a system daemon (for events such new hardware device printer queue ) and a per-user-login-session daemon (for general IPC needs among user applications). Also, the message bus is built on top of a general one-to-one message passing framework, which can be used by any two applications to communicate directly (without going through the message bus daemon).

dbus-glib

Homepage:
Spack package:
Versions:
0.110
Build Dependencies:
pkgconfig, expat, glib, dbus
Link Dependencies:
expat, glib, dbus
Description:
dbus-glib package provides GLib interface for D-Bus API.

dbxtool

Homepage:
Spack package:
Versions:
8, 7
Build Dependencies:
efivar, popt
Link Dependencies:
efivar, popt
Description:
tool for managing dbx updates installed on a machine.

dcap

Homepage:
Spack package:
Versions:
2.47.12
Build Dependencies:
autoconf, automake, libtool, m4
Description:
dCache access protocol client library.

dcmtk

Homepage:
Spack package:
Versions:
3.6.3, 3.6.2
Build Dependencies:
cmake, openssl, zlib, libtiff, libpng, libxml2, iconv
Link Dependencies:
openssl, zlib, libtiff, libpng, libxml2, iconv
Description:
DCMTK is a collection of libraries and applications implementing large parts of the DICOM standard.

dd4hep

Homepage:
Spack package:
Versions:
master, 1.13.1, 1.13.0, 1.12.1, 1.12.0, 1.11.2, 1.11.1, 1.11.0, 1.10.0
Build Dependencies:
cmake, boost, root, python, xerces-c, geant4, assimp, hepmc3, lcio
Link Dependencies:
boost, root, python, xerces-c, geant4, assimp, hepmc3, lcio
Description:
DD4hep is a software framework for providing a complete solution for full detector description (geometry, materials, visualization, readout, alignment, calibration, etc.) for the full experiment life cycle (detector concept development, detector optimization, construction, operation). It offers a consistent description through a single source of detector information for simulation, reconstruction, analysis, etc. It distributed under the LGPLv3 License.

ddd

Homepage:
Spack package:
Versions:
3.3.12
Build Dependencies:
gdb, lesstif
Link Dependencies:
gdb, lesstif
Description:
A graphical front-end for command-line debuggers such as GDB, DBX, WDB, Ladebug, JDB, XDB, the Perl debugger, the bash debugger bashdb, the GNU Make debugger remake, or the Python debugger pydb.

dealii

Homepage:
Spack package:
Versions:
master, 9.2.0, 9.1.1, 9.1.0, 9.0.1, 9.0.0, 8.5.1, 8.5.0, 8.4.2, 8.4.1, 8.4.0, 8.3.0, 8.2.1, 8.1.0
Build Dependencies:
cuda, cmake, blas, boost, bzip2, lapack, suite-sparse, zlib, mpi, adol-c, arpack-ng, assimp, doxygen, graphviz, ginkgo, gmsh, gsl, hdf5, metis, muparser, nanoflann, netcdf-c, netcdf-cxx, oce, p4est, petsc, python, scalapack, slepc, sundials, trilinos, symengine, tbb
Link Dependencies:
cuda, blas, boost, bzip2, lapack, suite-sparse, zlib, mpi, adol-c, arpack-ng, assimp, doxygen, graphviz, ginkgo, gsl, hdf5, metis, muparser, nanoflann, netcdf-c, netcdf-cxx, oce, p4est, petsc, python, scalapack, slepc, sundials, trilinos, symengine, tbb
Run Dependencies:
gmsh
Description:
C++ software library providing well-documented tools to build finite element codes for a broad variety of PDEs.

dealii-parameter-gui

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, qt
Link Dependencies:
qt
Description:
A qt based graphical user interface for editing deal.II .prm parameter files.

debbuild

Homepage:
Spack package:
Versions:
20.04.0
Description:
Build deb packages from rpm specifications.

decentralized-internet

Homepage:
Spack package:
Versions:
4.2.3
Description:
A library for building decentralized and grid computing projects

deconseq-standalone

Homepage:
Spack package:
Versions:
0.4.3
Build Dependencies:
perl
Link Dependencies:
perl
Description:
The DeconSeq tool can be used to automatically detect and efficiently remove sequence contaminations from genomic and metagenomic datasets.

dejagnu

Homepage:
Spack package:
Versions:
1.6, 1.4.4
Build Dependencies:
expect, tcl
Link Dependencies:
expect, tcl
Description:
DejaGnu is a framework for testing other programs. Its purpose is to provide a single front end for all tests.

delly2

Homepage:
Spack package:
Versions:
2017-08-03
Build Dependencies:
htslib, boost, bcftools
Link Dependencies:
htslib, boost, bcftools
Description:
Delly2 is an integrated structural variant prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short- read massively parallel sequencing data..

delphes

Homepage:
Spack package:
Versions:
master, 3.4.3pre04, 3.4.2, 3.4.1, 3.4.0, 3.3.3, 3.3.2, 3.3.1, 3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.12, 3.0.11, 3.0.10, 3.0.9, 3.0.8, 3.0.7, 3.0.6, 3.0.5
Build Dependencies:
cmake, root, pythia8
Link Dependencies:
root, pythia8
Description:
A high energy physics framework for fast simulation of a generic collider experiment.

delta

Homepage:
Spack package:
Versions:
0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
java
Run Dependencies:
java
Description:
Delta Lake is a storage layer that brings scalable, ACID transactions to Apache Spark and other big-data engines.

denovogear

Homepage:
Spack package:
Versions:
1.1.1, 1.1.0
Build Dependencies:
cmake, boost, htslib, eigen
Link Dependencies:
zlib
Description:
DeNovoGear is a software package to detect de novo mutations using next- generation sequencing data. It supports the analysis of many differential experimental designs and uses advanced statistical models to reduce the false positve rate.

dftbplus

Homepage:
Spack package:
Versions:
19.1
Build Dependencies:
lapack, blas, scalapack, mpi, elsi, magma, arpack-ng, dftd3-lib
Link Dependencies:
lapack, blas, scalapack, mpi, elsi, magma, arpack-ng, dftd3-lib
Description:
DFTB+ is an implementation of the Density Functional based Tight Binding (DFTB) method, containing many extensions to the original method.

dftd3-lib

Homepage:
Spack package:
Versions:
0.9.2
Description:
A dispersion correction for density functionals, Hartree-Fock and semi- empirical quantum chemical methods

dftfe

Homepage:
Spack package:
Versions:
0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
cmake, mpi, dealii, scalapack, alglib, libxc, spglib, libxml2
Link Dependencies:
mpi, dealii, scalapack, alglib, libxc, spglib, libxml2
Description:
Real-space DFT calculations using Finite Elements

dhpmm-f

Homepage:
Spack package:
Versions:
alpha
Link Dependencies:
blas, lapack
Description:
DHPMM_P:High-precision Matrix Multiplication with Faithful Rounding

dhtest

Homepage:
Spack package:
Versions:
1.5
Description:
dhtest linux dhcp client simulation tool. It can simulate hundreds of dhcp client from a linux machine. Linux root login is needed because the tool requires layer2 raw socket for sending and receiving dhcp packets.

dia

Homepage:
Spack package:
Versions:
0.97.3
Build Dependencies:
intltool, gettext, pkgconfig, gtkplus, libxslt, python, swig, libsm, libuuid, libxinerama, libxrender, libxml2, freetype
Link Dependencies:
gtkplus, libxslt, python, swig, libsm, libuuid, libxinerama, libxrender, libxml2, freetype
Description:
Dia is a program for drawing structured diagrams.

dialign

Homepage:
Spack package:
Versions:
2.2.1
Description:
DIALIGN is a software program for multiple sequence alignment developed by Burkhard Morgenstern et al..

dialign-tx

Homepage:
Spack package:
Versions:
1.0.2
Description:
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

diamond

Homepage:
Spack package:
Versions:
0.9.25, 0.9.23, 0.9.22, 0.9.21, 0.9.20, 0.9.19, 0.9.14, 0.8.38, 0.8.26
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib
Description:
DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data.

diffmark

Homepage:
Spack package:
Versions:
master
Build Dependencies:
autoconf, automake, libtool, m4, libxml2
Link Dependencies:
libxml2
Description:
Diffmark is a DSL for transforming one string to another.

diffsplice

Homepage:
Spack package:
Versions:
0.1.2beta, 0.1.1
Description:
A novel tool for discovering and quantitating alternative splicing variants present in an RNA-seq dataset, without relying on annotated transcriptome or pre-determined splice pattern.

diffutils

Homepage:
Spack package:
Versions:
3.7, 3.6
Build Dependencies:
iconv
Link Dependencies:
iconv
Description:
GNU Diffutils is a package of several programs related to finding differences between files.

dihydrogen

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cuda, cmake, mpi, aluminum, cudnn, cub, openblas, intel-mkl, veclibfort, essl, netlib-lapack, half, ninja, py-breathe, doxygen
Link Dependencies:
cuda, mpi, aluminum, cudnn, cub, openblas, intel-mkl, veclibfort, essl, netlib-lapack, half
Test Dependencies:
catch2
Description:
DiHydrogen is the second version of the Hydrogen fork of the well-known distributed linear algebra library, Elemental. DiHydrogen aims to be a basic distributed multilinear algebra interface with a particular emphasis on the needs of the distributed machine learning effort, LBANN.

dimemas

Homepage:
Spack package:
Versions:
5.4.1
Build Dependencies:
autoconf, automake, libtool, m4, bison, flex, boost
Link Dependencies:
bison, flex, boost
Run Dependencies:
bison, flex
Description:
High-abstracted network simulator for message-passing programs.

ding-libs

Homepage:
Spack package:
Versions:
0.6.1, 0.6.0, 0.5.0
Description:
A meta-package that pulls in libcollection, libdhash, libini_config, librefarray libbasicobjects, and libpath_utils.

dire

Homepage:
Spack package:
Versions:
2.004
Build Dependencies:
zlib, boost, lhapdf, hepmc, pythia8
Link Dependencies:
zlib, boost, lhapdf, hepmc, pythia8
Description:
DIRE (short for dipole resummation) a C++ program for all-order radiative corrections to scattering processes in high-energy particle collisions.

direnv

Homepage:
Spack package:
Versions:
2.20.0, 2.11.3
Build Dependencies:
go
Description:
direnv is an environment switcher for the shell.

discovar

Homepage:
Spack package:
Versions:
52488
Description:
DISCOVAR is a variant caller and small genome assembler.

discovardenovo

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
samtools, jemalloc
Link Dependencies:
samtools, jemalloc
Description:
DISCOVAR de novo is a large (and small) de novo genome assembler. It quickly generates highly accurate and complete assemblies using the same single library data as used by DISCOVAR. It currently doesn't support variant calling, for that, please use DISCOVAR instead.

disktype

Homepage:
Spack package:
Versions:
9.2.1
Description:
A fork of the disktype disk and disk image format detection tool.

dislin

Homepage:
Spack package:
Versions:
11.0
Build Dependencies:
motif, gl, glx
Link Dependencies:
motif, gl, glx
Description:
DISLIN is a high level and easy to use graphics library for displaying data as curves, bar graphs, pie charts, 3D-colour plots, surfaces, contours and maps.

distcc

Homepage:
Spack package:
Versions:
3.3.3
Build Dependencies:
popt, libiberty
Link Dependencies:
popt, libiberty
Description:
distcc is a program to distribute compilation of C or C++ code across several machines on a network.

diy

Homepage:
Spack package:
Versions:
master, 3.5.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Data-parallel out-of-core library

dlpack

Homepage:
Spack package:
Versions:
master
Description:
DLPack is an RFC for common tensor and operator guidelines in deep learning systems.

dmd

Homepage:
Spack package:
Versions:
2.081.1
Build Dependencies:
openssl, curl
Link Dependencies:
openssl, curl
Description:
DMD is the reference compiler for the D programming language.

dmidecode

Homepage:
Spack package:
Versions:
3-2
Description:
Dmidecode reports information about your system's hardware as described in your system BIOS according to the SMBIOS/DMI standard. .

dmlc-core

Homepage:
Spack package:
Versions:
master, 20170508
Build Dependencies:
cmake
Description:
DMLC-Core is the backbone library to support all DMLC projects, offers the bricks to build efficient and scalable distributed machine learning libraries.

dmtcp

Homepage:
Spack package:
Versions:
2.6.0, 2.5.2
Description:
DMTCP (Distributed MultiThreaded Checkpointing) transparently checkpoints a single-host or distributed computation in user-space -- with no modifications to user code or to the O/S.

dmxproto

Homepage:
Spack package:
Versions:
2.3.1
Build Dependencies:
pkgconfig, util-macros
Description:
Distributed Multihead X (DMX) Extension. This extension defines a protocol for clients to access a front-end proxy X server that controls multiple back-end X servers making up a large display.

dnsmap

Homepage:
Spack package:
Versions:
master
Description:
dnsmap was originally released back in 2006 and was inspired by the fictional story.

dnsmasq

Homepage:
Spack package:
Versions:
2.81, 2.80, 2.79, 2.78, 2.77, 2.76, 2.75, 2.74, 2.73, 2.72, 2.71, 2.70
Description:
A lightweight, caching DNS proxy with integrated DHCP server.

dnstop

Homepage:
Spack package:
Versions:
master
Build Dependencies:
libpcap
Link Dependencies:
libpcap
Description:
Stay on top of your DNS traffic.

docbook-xml

Homepage:
Spack package: