Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 5485 mainline packages:

3dtk nfs-utils py-torchvision
3proxy nghttp2 py-tornado
abduco nginx py-tox
abi-compliance-checker ngmerge py-tpot
abi-dumper ngmlr py-tqdm
abinit ngspice py-traceback2
abseil-cpp nicstat py-traitlets
abyss nim py-traits
accfft ninja py-traitsui
acct ninja-fortran py-transformers
accumulo nix py-treehash
ace njet py-tuiview
ack nlcglib py-twine
acl nlohmann-json py-twisted
acpica-tools nlohmann-json-schema-validator py-typed-ast
acpid nlopt py-typesentry
activeharmony nmap py-typing
activemq nn-c py-typing-extensions
acts nnvm py-tzlocal
addrwatch node-js py-ucx-py
adept-utils notmuch py-ujson
adf npb py-umalqurra
adiak npm py-umi-tools
adios npth py-uncertainties
adios2 nrm py-unicycler
adlbx ns-3-dev py-unidecode
admixtools nseg py-unittest2
adol-c nsimd py-unittest2py3k
advancecomp nspr py-unshare
adwaita-icon-theme ntirpc py-update-checker
aegean ntpoly py-uproot
aeskeyfind numactl py-uproot3
aespipe numamma py-uproot3-methods
agrep numap py-uproot4
aida numdiff py-uritemplate
akantu nut py-urllib3
alan nvdimmsim py-urwid
albany nvhpc py-us
albert nvptx-tools py-usgs
alglib nvshmem py-utils
allpaths-lg nvtop py-uvloop
alluxio nwchem py-uvw
alps nyancat py-uwsgi
alquimia ocaml py-vcf-kit
alsa-lib ocamlbuild py-vcstool
aluminum occa py-vcstools
ambari oce py-vcversioner
amber oci-systemd-hook py-vermin
amdblis ocl-icd py-versioneer
amdfftw oclgrind py-vine
amdlibflame oclint py-virtualenv
amdlibm oclock py-virtualenv-clone
amdscalapack octave py-virtualenvwrapper
amg octave-arduino py-visdom
amg2013 octave-control py-voluptuous
amgx octave-gsl py-vsc-base
aml octave-instrctl py-vsc-install
amp octave-io py-vsts
ampliconnoise octave-optim py-vsts-cd-manager
amr-wind octave-quaternion py-walinuxagent
amrex octave-signal py-wand
amrvis octave-splines py-wandb
anaconda2 octave-statistics py-warlock
anaconda3 octave-struct py-warpx
andi octave-symbolic py-wasabi
angsd octopus py-watchdog
ant of-catalyst py-wcsaxes
antimony of-precice py-wcwidth
antlr omega-h py-weave
ants ompss py-webencodings
aocc ompt-openmp py-webkit-server
aocl-sparse onednn py-weblogo
aoflagger oniguruma py-webob
aom ont-albacore py-websocket-client
aomp opa-psm2 py-websockets
apachetop opam py-werkzeug
apcomp opari2 py-wget
ape open-iscsi py-whatshap
aperture-photometry open-isns py-wheel
apex openal-soft py-whichcraft
apfel openbabel py-widgetsnbextension
apple-libunwind openblas py-wincertstore
apple-libuuid opencascade py-workload-automation
applewmproto opencl-c-headers py-wradlib
appres opencl-clhpp py-wrapt
apr opencl-headers py-wstool
apr-util opencoarrays py-wub
aragorn opencv py-wxmplot
arbor opendx py-wxpython
arborx openexr py-xarray
archer openfast py-xattr
argobots openfdtd py-xdot
argon2 openfoam py-xenv
argp-standalone openfoam-org py-xgboost
args openfst py-xlrd
argtable opengl py-xlsxwriter
aria2 openglu py-xlwt
arm openimageio py-xmlrunner
arm-forge openipmi py-xmltodict
armadillo openjdk py-xopen
arpack-ng openjpeg py-xpyb
arrayfire openkim-models py-xvfbwrapper
arrow openldap py-yacs
asagi openloops py-yahmm
ascent openmc py-yajl
asciidoc openmm py-yamlreader
asciidoc-py3 openmolcas py-yapf
asdcplib openmpi py-yarl
asdf-cxx openmx py-yolk3k
aspa opennurbs py-youtube-dl
aspcud openpa py-yt
aspect openpbs py-ytopt
aspell openpmd-api py-zarr
aspell6-de openrasmol py-zc-buildout
aspell6-en openresty py-zc-lockfile
aspell6-es openscenegraph py-zict
aspera-cli openslide py-zipp
assimp openslp py-zope-event
astra openspeedshop py-zope-interface
astral openspeedshop-utils py-zxcvbn
astyle openssh pythia6
at-spi2-atk openssl pythia8
at-spi2-core openstf python
atf opensubdiv q-e-sirius
athena opentsdb qbank
atk openvslam qbox
atlas openwsman qca
atmi opium qcachegrind
atom-dft optional-lite qd
atompaw optipng qemu
atop opus qgis
attr oracle-instant-client qgraf
audacious orbit2 qhull
audacity orc qjson
audit-userspace orca qmcpack
augustus orfm qmd-progress
authd orientdb qnnpack
authselect orthofiller qorts
autoconf orthofinder qperf
autoconf-archive orthomcl qrupdate
autodock-gpu osi qscintilla
autodock-vina osmctools qt
autofact osqp qt-creator
autogen ossp-uuid qtgraph
automaded osu-micro-benchmarks qthreads
automake otf qtkeychain
avizo otf2 quantum-espresso
aws-parallelcluster p11-kit quartz
awscli p3dfft3 quicksilver
axel p4est quinoa
axl p7zip quota
axom pacbio-daligner qwt
babelflow pacbio-damasker qwtpolar
babeltrace pacbio-dazz-db r
backupninja pacbio-dextractor r-a4
bam-readcount pacifica-cli r-a4base
bamaddrg packmol r-a4classif
bamdst pacparser r-a4core
bamtools pacvim r-a4preproc
bamutil pagit r-a4reporting
bannergrab pagmo r-abadata
barrnap pajeng r-abaenrichment
bart pal r-abind
bash paml r-absseq
bash-completion panda r-acde
bashtop pandaseq r-acepack
bat pandoc r-acgh
batctl pango r-acme
bats pangolin r-ada
bazel pangomm r-adabag
bbcp papi r-ade4
bbmap papyrus r-adegenet
bc paradiseo r-adegraphics
bcache parallel r-adephylo
bcftools parallel-netcdf r-adespatial
bcl2fastq2 parallelio r-adgoftest
bdftopcf parallelmergetree r-adsplit
bdii paraver r-aer
bdw-gc paraview r-affxparser
beagle parmetis r-affy
beakerlib parmgridgen r-affycomp
bear parquet-cpp r-affycompatible
beast-tracer parquet-format r-affycontam
beast1 parsec r-affycoretools
beast2 parsimonator r-affydata
bedops parsplice r-affyexpress
bedtools2 partitionfinder r-affyilm
beforelight pasta r-affyio
benchmark patch r-affypdnn
berkeley-db patchelf r-affyplm
bertini patchutils r-affyqcreport
bgpdump pathfinder r-affyrnadegradation
bib2xhtml pax-utils r-agdex
bigreqsproto pbbam r-agilp
bind9 pbmpi r-agimicrorna
binutils pbsuite r-aims
bioawk pciutils r-aldex2
biobambam2 pcl r-allelicimbalance
biobloom pcma r-alpine
biopieces pcre r-als
bird pcre2 r-alsace
bismark pdf2svg r-altcdfenvs
bison pdftk r-amap
bitlbee pdsh r-amelia
bitmap pdt r-ampliqueso
bitsery pegtl r-analysispageserver
blaspp pennant r-anaquin
blasr percept r-aneufinder
blasr-libcpp percona-server r-aneufinderdata
blast-legacy perfstubs r-animation
blast-plus perl r-annaffy
blast2go perl-acme-damn r-annotate
blat perl-algorithm-diff r-annotationdbi
blaze perl-alien-build r-annotationfilter
blis perl-alien-libxml2 r-annotationforge
bliss perl-alien-svn r-annotationhub
blitz perl-app-cmd r-anytime
blktrace perl-array-utils r-aod
bloaty perl-b-hooks-endofscope r-ape
blogbench perl-bio-searchio-hmmer r-argparse
blt perl-bioperl r-aroma-light
bmake perl-bit-vector r-askpass
bmi perl-cairo r-assertive-base
bml perl-capture-tiny r-assertive-properties
bohrium perl-carp-clan r-assertive-types
boinc-client perl-cgi r-assertthat
bolt perl-class-data-inheritable r-backports
bonniepp perl-class-inspector r-bamsignals
bookleaf-cpp perl-class-load r-base64
boost perl-class-load-xs r-base64enc
boostmplcartesianproduct perl-clone r-bayesm
botan perl-clone-choose r-bbmisc
bowtie perl-compress-raw-bzip2 r-beachmat
bowtie2 perl-compress-raw-zlib r-beanplot
boxlib perl-config-general r-beeswarm
bpp-core perl-contextual-return r-bfast
bpp-phyl perl-cpan-meta-check r-bfastspatial
bpp-phyl-omics perl-data-dumper r-bglr
bpp-seq perl-data-optlist r-bh
bpp-seq-omics perl-data-stag r-biasedurn
bpp-suite perl-date-manip r-bibtex
bracken perl-db-file r-bigalgebra
braker perl-dbd-mysql r-bigmemory
branson perl-dbd-pg r-bigmemory-sri
breakdancer perl-dbd-sqlite r-bindr
bref3 perl-dbi r-bindrcpp
breseq perl-devel-cycle r-bio3d
bridger perl-devel-globaldestruction r-biobase
brigand perl-devel-overloadinfo r-biocfilecache
brltty perl-devel-stacktrace r-biocgenerics
brotli perl-devel-symdump r-biocinstaller
brpc perl-digest-md5 r-biocmanager
brynet perl-dist-checkconflicts r-biocneighbors
bsseeker2 perl-encode-locale r-biocparallel
bubblewrap perl-error r-biocsingular
bucky perl-eval-closure r-biocstyle
buddy perl-exception-class r-biocversion
bumpversion perl-exporter-tiny r-biom-utils
busco perl-extutils-config r-biomart
busybox perl-extutils-depends r-biomartr
butter perl-extutils-helpers r-biomformat
butterflypack perl-extutils-installpaths r-biostrings
bwa perl-extutils-makemaker r-biovizbase
bwtool perl-extutils-pkgconfig r-bit
byacc perl-ffi-checklib r-bit64
byobu perl-file-chdir r-bitops
byte-unixbench perl-file-copy-recursive r-blob
byteman perl-file-homedir r-blockmodeling
bzip2 perl-file-listing r-bmp
c perl-file-pushd r-bookdown
c-ares perl-file-sharedir-install r-boot
c-blosc perl-file-slurp r-boruta
c-blosc2 perl-file-slurp-tiny r-brew
c-lime perl-file-slurper r-brio
cabana perl-file-which r-broom
cachefilesd perl-font-ttf r-bsgenome
caffe perl-forks r-bsgenome-hsapiens-ucsc-hg19
cairo perl-gd r-bsseq
cairomm perl-gdgraph r-bumphunter
caliper perl-gdgraph-histogram r-c50
callflow perl-gdtextutil r-ca
callpath perl-graph r-cairo
camellia perl-graph-readwrite r-callr
camp perl-hash-merge r-car
camx perl-html-parser r-caracas
canal perl-html-tagset r-cardata
candle-benchmarks perl-http-cookies r-caret
cantera perl-http-daemon r-caroline
canu perl-http-date r-category
cap3 perl-http-message r-catools
capnproto perl-http-negotiate r-cdcfluview
capstone perl-inline r-cellranger
cardioid perl-inline-c r-checkmate
care perl-io-all r-checkpoint
casacore perl-io-compress r-chemometrics
cask perl-io-html r-chipseq
casper perl-io-prompt r-chron
cassandra perl-io-sessiondata r-circlize
catalyst perl-io-socket-ssl r-circstats
catch2 perl-io-string r-class
cbc perl-io-stringy r-classint
cbench perl-io-tty r-cli
cbflib perl-ipc-run r-clipr
cblas perl-json r-clisymbols
cbtf perl-libwww-perl r-clue
cbtf-argonavis perl-libxml-perl r-cluster
cbtf-argonavis-gui perl-list-moreutils r-clustergeneration
cbtf-krell perl-list-moreutils-xs r-clusterprofiler
cbtf-lanl perl-log-log4perl r-cner
cc65 perl-logger-simple r-coda
ccache perl-lwp-mediatypes r-codetools
ccfits perl-lwp-protocol-https r-codex
ccls perl-mailtools r-coin
ccs-qcd perl-math-bezier r-colorspace
cctools perl-math-cdf r-combinat
cdbfasta perl-math-cephes r-commonmark
cdd perl-math-matrixreal r-complexheatmap
cddlib perl-math-round r-compositions
cdecimal perl-math-vecstat r-condop
cdhit perl-mce r-conquer
cdo perl-module-build r-construct
ceed perl-module-build-tiny r-convevol
cereal perl-module-implementation r-copula
ceres-solver perl-module-runtime r-corhmm
cfitsio perl-module-runtime-conflicts r-corpcor
cgal perl-moose r-corrplot
cgdb perl-mozilla-ca r-countrycode
cgdcbxd perl-mro-compat r-covr
cget perl-namespace-clean r-cowplot
cgl perl-net-http r-cpp11
cgm perl-net-scp-expect r-crayon
cgns perl-net-ssleay r-credentials
chai perl-number-format r-crosstalk
changa perl-object-insideout r-crul
channelflow perl-package-deprecationmanager r-ctc
chapel perl-package-stash r-cubature
charliecloud perl-package-stash-xs r-cubist
charmpp perl-padwalker r-curl
chatterbug perl-parallel-forkmanager r-dada2
check perl-params-util r-data-table
chgcentre perl-params-validate r-dbi
chill perl-parse-recdescent r-dbplyr
chlorop perl-path-tiny r-debugme
chombo perl-pdf-api2 r-decipher
chrony perl-pegex r-delayedarray
chrpath perl-perl-unsafe-signals r-delayedmatrixstats
cinch perl-perl-version r-deldir
circos perl-perl4-corelibs r-dendextend
cistem perl-perl6-slurp r-deoptim
citcoms perl-perlio-gzip r-deoptimr
cityhash perl-perlio-utf8-strict r-desc
ck perl-readonly r-deseq
clamav perl-regexp-common r-deseq2
clamr perl-scalar-list-utils r-desolve
clapack perl-scalar-util-numeric r-devtools
clara perl-set-intervaltree r-diagrammer
claw perl-set-intspan r-dicekriging
cleaveland4 perl-set-scalar r-dichromat
cleverleaf perl-soap-lite r-diffobj
clfft perl-star-fusion r-diffusionmap
clhep perl-statistics-basic r-digest
cli11 perl-statistics-descriptive r-diptest
clinfo perl-statistics-pca r-dirichletmultinomial
clingo perl-sub-exporter r-dismo
clingo-bootstrap perl-sub-exporter-progressive r-diversitree
cln perl-sub-identify r-dnacopy
cloc perl-sub-install r-do-db
cloog perl-sub-name r-domc
cloverleaf perl-sub-uplevel r-doparallel
cloverleaf3d perl-svg r-dorng
clp perl-swissknife r-dose
clustal-omega perl-sys-sigaction r-dosnow
clustalw perl-task-weaken r-dotcall64
cmake perl-term-readline-gnu r-downloader
cmaq perl-termreadkey r-dplyr
cmark perl-test-cleannamespaces r-dqrng
cminpack perl-test-deep r-dss
cmocka perl-test-differences r-dt
cmockery perl-test-exception r-dtw
cmor perl-test-fatal r-dygraphs
cnmem perl-test-memory-cycle r-dynamictreecut
cnpy perl-test-more r-e1071
cntk perl-test-most r-earth
cntk1bitsgd perl-test-needs r-ecp
cnvnator perl-test-output r-edger
codar-cheetah perl-test-requires r-ellipse
code-server perl-test-requiresinternet r-ellipsis
codec2 perl-test-warn r-emmli
codes perl-test-warnings r-energy
coevp perl-text-csv r-enrichplot
cohmm perl-text-diff r-ensembldb
coin3d perl-text-format r-envstats
coinhsl perl-text-simpletable r-ergm
coinutils perl-text-soundex r-europepmc
collectd perl-text-unidecode r-evaluate
collier perl-thread-queue r-evd
colm perl-threads r-exactextractr
colordiff perl-time-hires r-exomecopy
comd perl-time-piece r-exomedepth
comgr perl-timedate r-expint
commons-lang perl-tk r-expm
commons-lang3 perl-try-tiny r-factoextra
commons-logging perl-uri r-factominer
compadre perl-want r-fansi
compiz perl-www-robotrules r-farver
compositeproto perl-xml-dom r-fastcluster
conda4aarch64 perl-xml-dom-xpath r-fastdigest
conduit perl-xml-filter-buffertext r-fastmap
connect-proxy perl-xml-libxml r-fastmatch
conserver perl-xml-libxslt r-fastmatrix
console-bridge perl-xml-namespacesupport r-fdb-infiniummethylation-hg18
constype perl-xml-parser r-fdb-infiniummethylation-hg19
consul perl-xml-parser-lite r-ff
converge perl-xml-quote r-fftwtools
corenlp perl-xml-regexp r-fgsea
coreutils perl-xml-sax r-fields
corset perl-xml-sax-base r-filehash
cosbench perl-xml-sax-writer r-findpython
cosma perl-xml-simple r-fit-models
cosmoflow-benchmark perl-xml-twig r-fitdistrplus
cosmomc perl-xml-writer r-flashclust
cosp2 perl-xml-xpathengine r-flexclust
cotter perl-yaml r-flexmix
couchdb perl-yaml-libyaml r-fnn
cowsay pestpp r-forcats
cp2k petsc r-foreach
cpio pexsi r-forecast
cpmd pfapack r-foreign
cpp-httplib pfft r-formatr
cppad pflask r-formula
cppcheck pflotran r-fpc
cppgsl pfunit r-fpcompare
cpprestsdk pgdspider r-fracdiff
cppunit pgi r-fs
cppzmq phantompeakqualtools r-futile-logger
cpu-features phast r-futile-options
cpuinfo phasta r-future
cqrlib phist r-future-apply
cquery phoenix r-gamlss
cracklib photos r-gamlss-data
cradl php r-gamlss-dist
cram phrap-crossmatch-swat r-gbm
cray-fftw phred r-gbrd
cray-libsci phylip r-gcrma
cray-mpich phylobayesmpi r-gdalutils
cromwell phyluce r-gdata
cromwell-womtool picard r-gdsfmt
cronie picsar r-geiger
cryptopp picsarlite r-genefilter
cryptsetup pidx r-genelendatabase
csa-c pig r-genemeta
cscope pigz r-geneplotter
csdp pilon r-generics
ctffind pindel r-genetics
ctpl pinentry r-genie3
ctre pinfo r-genomeinfodb
cub pipework r-genomeinfodbdata
cube piranha r-genomicalignments
cube-blade pism r-genomicfeatures
cubelib pixman r-genomicranges
cubew pixz r-gensa
cubist pkg-config r-geomorph
cuda pkgconf r-geonames
cuda-memtest pktools r-geoquery
cudnn planck-likelihood r-geor
cufflinks plasma r-geosphere
cunit platypus r-gert
cups plink r-getopt
curl plink-ng r-getoptlong
cusz plplot r-ggally
cvector plumed r-ggbeeswarm
cvs ply r-ggbio
cxx pmdk r-ggdendro
cxxopts pmerge r-ggforce
cxxtest pmgr-collective r-ggjoy
cyrus-sasl pmix r-ggmap
czmq pmlib r-ggplot2
dakota pnfft r-ggplotify
daligner pngquant r-ggpubr
dalton pngwriter r-ggraph
damageproto pnmpi r-ggrepel
damaris poamsa r-ggridges
damselfly pocl r-ggsci
darshan-runtime podio r-ggsignif
darshan-util poke r-ggvis
dash polymake r-gh
datamash poplddecay r-gistr
dataspaces poppler r-git2r
datatransferkit poppler-data r-gitcreds
date popt r-glimma
dateutils porta r-glmnet
davix portage r-globaloptions
dbcsr portcullis r-globals
dbow2 postgis r-glue
dbus postgresql r-gmodels
dbus-glib povray r-gmp
dbxtool powerapi r-go-db
dcap powertop r-goftest
dcmtk ppl r-gofuncr
dd4hep pplacer r-googlevis
ddd ppopen-appl-amr-fdm r-goplot
dealii ppopen-appl-bem r-gosemsim
dealii-parameter-gui ppopen-appl-bem-at r-goseq
debbuild ppopen-appl-dem-util r-gostats
debugedit ppopen-appl-fdm r-gower
decentralized-internet ppopen-appl-fdm-at r-gplots
deconseq-standalone ppopen-appl-fem r-graph
dejagnu ppopen-appl-fvm r-graphlayouts
delly2 ppopen-at r-grbase
delphes ppopen-math-mp r-gridbase
delta ppopen-math-vis r-gridextra
denovogear prank r-gridgraphics
dftbplus precice r-gsa
dftd3-lib predixy r-gsalib
dftd4 premake-core r-gseabase
dftfe presentproto r-gsl
dhpmm-f preseq r-gsodr
dhtest presto r-gss
dia price r-gstat
dialign primer3 r-gsubfn
dialign-tx prinseq-lite r-gtable
diamond printproto r-gtools
diffmark prism r-gtrellis
diffsplice prmon r-gviz
diffutils prng r-gwmodel
dihydrogen probconsrna r-haven
dimemas procenv r-hdf5array
ding-libs process-in-process r-hdf5r
dire procps r-hexbin
direnv procps-ng r-hh
discovar prodigal r-highr
discovardenovo professor r-hmisc
disktype profugusmc r-hms
dislin proj r-hoardr
distcc prokka r-htmltable
diy prometheus r-htmltools
dlib protobuf r-htmlwidgets
dlpack protobuf-c r-httpcode
dmd proxymngr r-httpuv
dmidecode prrte r-httr
dmlc-core pruners-ninja r-hwriter
dmtcp ps-lite r-hypergraph
dmxproto psi4 r-ica
dnsmap pslib r-igraph
dnsmasq psm r-illuminahumanmethylation450kanno-ilmn12-hg19
dnstop psmc r-illuminaio
dnstracer pstreams r-imager
docbook-xml pugixml r-impute
docbook-xsl pulseaudio r-influencer
dock pumi r-ini
dos2unix pv r-inline
dosfstools pvm r-interactivedisplaybase
dotconf pxz r-intervals
dotnet-core-sdk py-3to2 r-inum
double-conversion py-4suite-xml r-ipred
doxygen py-abipy r-iranges
dpdk py-absl-py r-irdisplay
draco py-accimage r-irkernel
dracut py-acme-tiny r-irlba
dramsim2 py-adal r-isdparser
dray py-adb-enhanced r-iso
dri2proto py-addict r-isoband
dri3proto py-adios r-iterators
drill py-advancedhtmlparser r-janitor
dropwatch py-aenum r-jaspar2018
druid py-affine r-jomo
ds py-agate r-jpeg
dsdp py-agate-dbf r-jsonlite
dsqss py-agate-excel r-kegg-db
dsrc py-agate-sql r-kegggraph
dssp py-aiobotocore r-keggrest
dtcmp py-aiofiles r-kernlab
dtf py-aiohttp r-kernsmooth
duperemove py-aiohttp-cors r-kknn
dyninst py-aioitertools r-knitr
dysco py-aioredis r-ks
e2fsprogs py-alabaster r-labeling
ea-utils py-alembic r-lambda-r
eagle py-altgraph r-laplacesdemon
earlyoom py-amqp r-lars
easybuild py-angel r-later
ebms py-ansible r-lattice
eccodes py-antlr4-python3-runtime r-latticeextra
ecdsautils py-anuga r-lava
ecflow py-apache-beam r-lazyeval
eclipse-gcj-parser py-apache-libcloud r-ldheatmap
ecos py-apex r-leafem
ecp-data-vis-sdk py-apipkg r-leaflet
ecp-proxy-apps py-appdirs r-leaflet-providers
ed py-applicationinsights r-leafpop
editline py-appnope r-leaps
editres py-apptools r-learnbayes
edm4hep py-apscheduler r-leiden
eem py-archspec r-lfe
efivar py-argcomplete r-lhs
eigen py-argh r-libcoin
eigenexa py-argon2-cffi r-lifecycle
elasticsearch py-argparse r-limma
elemental py-args r-limsolve
elfutils py-arrow r-listenv
elk py-arviz r-lme4
elmerfem py-asciitree r-lmtest
elpa py-asdf r-lobstr
elsd py-ase r-locfit
elsdc py-asgiref r-log4r
elsi py-asn1crypto r-loo
emacs py-aspy-yaml r-lpsolve
ember py-asserts r-lsei
emboss py-asteval r-lubridate
embree py-astor r-lumi
enca py-astpretty r-lwgeom
enchant py-astroid r-magic
energyplus py-astropy r-magick
entrezdirect py-astropy-healpix r-magrittr
entt py-astropy-helpers r-makecdfenv
environment-modules py-astunparse r-maldiquant
enzo py-async-generator r-manipulatewidget
eospac py-async-timeout r-mapplots
eq-r py-asyncio r-mapproj
er py-atomicwrites r-maps
erfa py-atpublic r-maptools
erlang py-atropos r-mapview
ermod py-attrs r-markdown
erne py-audioread r-mass
es-shell py-autograd r-mathjaxr
esmf py-autograd-gamma r-matlab
espanso py-autopep8 r-matr
essl py-auxlib r-matrix
etcd py-avro r-matrixgenerics
ethminer py-avro-json-serializer r-matrixmodels
ethtool py-avro-python3 r-matrixstats
etsf-io py-awesome-slugify r-mclust
evemu py-awkward r-mcmcglmm
everytrace py-awkward0 r-mco
everytrace-example py-awkward1 r-mda
evieext py-azote r-memoise
evtgen py-azure-batch r-memuse
exa py-azure-cli r-mergemaid
exabayes py-azure-cli-command-modules-nspkg r-metap
exago py-azure-cli-core r-methylumi
examinimd py-azure-cli-nspkg r-mgcv
examl py-azure-cli-telemetry r-mgraster
exampm py-azure-common r-mice
exasp2 py-azure-core r-microbenchmark
exciting py-azure-cosmos r-mime
exiv2 py-azure-datalake-store r-minfi
exmcutils py-azure-functions-devops-build r-miniui
exodusii py-azure-graphrbac r-minqa
exonerate py-azure-identity r-misc3d
exonerate-gff3 py-azure-keyvault r-mitml
expat py-azure-keyvault-certificates r-mitools
expect py-azure-keyvault-keys r-mixtools
express py-azure-keyvault-nspkg r-mlbench
extrae py-azure-keyvault-secrets r-mlinterfaces
exuberant-ctags py-azure-loganalytics r-mlr
eztrace py-azure-mgmt-advisor r-mlrmbo
f2c py-azure-mgmt-apimanagement r-mmwrweek
f77-zmq py-azure-mgmt-appconfiguration r-mnormt
f90cache py-azure-mgmt-applicationinsights r-mockery
fabtests py-azure-mgmt-authorization r-modelmetrics
fairlogger py-azure-mgmt-batch r-modelr
faiss py-azure-mgmt-batchai r-modeltools
fakechroot py-azure-mgmt-billing r-mpm
fakexrandr py-azure-mgmt-botservice r-msnbase
falcon py-azure-mgmt-cdn r-multcomp
fann py-azure-mgmt-cognitiveservices r-multicool
faodel py-azure-mgmt-compute r-multitaper
fast-global-file-status py-azure-mgmt-consumption r-multtest
fasta py-azure-mgmt-containerinstance r-munsell
fastdb py-azure-mgmt-containerregistry r-mutoss
fastdfs py-azure-mgmt-containerservice r-mvtnorm
fastjar py-azure-mgmt-core r-mzid
fastjet py-azure-mgmt-cosmosdb r-mzr
fastjson py-azure-mgmt-datalake-analytics r-nada
fastmath py-azure-mgmt-datalake-store r-nanotime
fastme py-azure-mgmt-datamigration r-ncbit
fastp py-azure-mgmt-deploymentmanager r-ncdf4
fastphase py-azure-mgmt-devtestlabs r-network
fastq-screen py-azure-mgmt-dns r-networkd3
fastqc py-azure-mgmt-eventgrid r-nimble
fastqvalidator py-azure-mgmt-eventhub r-nleqslv
fasttext py-azure-mgmt-hdinsight r-nlme
fasttransforms py-azure-mgmt-imagebuilder r-nloptr
fasttree py-azure-mgmt-iotcentral r-nmf
fastx-toolkit py-azure-mgmt-iothub r-nmof
faust py-azure-mgmt-iothubprovisioningservices r-nnet
fca py-azure-mgmt-keyvault r-nnls
fcgi py-azure-mgmt-kusto r-nor1mix
fd-find py-azure-mgmt-loganalytics r-nortest
fdupes py-azure-mgmt-managedservices r-np
feh py-azure-mgmt-managementgroups r-npsurv
fenics py-azure-mgmt-maps r-numderiv
fenics-basix py-azure-mgmt-marketplaceordering r-oligoclasses
fenics-dolfinx py-azure-mgmt-media r-openssl
feq-parse py-azure-mgmt-monitor r-openxlsx
fermi py-azure-mgmt-msi r-optparse
fermikit py-azure-mgmt-netapp r-ordinal
fermisciencetools py-azure-mgmt-network r-org-hs-eg-db
ferret py-azure-mgmt-nspkg r-organismdbi
ffb py-azure-mgmt-policyinsights r-packrat
ffmpeg py-azure-mgmt-privatedns r-pacman
ffr py-azure-mgmt-rdbms r-paleotree
ffsb py-azure-mgmt-recoveryservices r-pamr
fftw py-azure-mgmt-recoveryservicesbackup r-pan
fgsl py-azure-mgmt-redhatopenshift r-parallelly
figlet py-azure-mgmt-redis r-parallelmap
figtree py-azure-mgmt-relay r-paramhelpers
file py-azure-mgmt-reservations r-party
filebench py-azure-mgmt-resource r-partykit
filo py-azure-mgmt-search r-patchwork
filtlong py-azure-mgmt-security r-pathview
fimpute py-azure-mgmt-servicebus r-pbapply
find-circ py-azure-mgmt-servicefabric r-pbdzmq
findbugs py-azure-mgmt-signalr r-pbkrtest
findutils py-azure-mgmt-sql r-pcamethods
fio py-azure-mgmt-sqlvirtualmachine r-pcapp
fipscheck py-azure-mgmt-storage r-pegas
fish py-azure-mgmt-trafficmanager r-permute
fixesproto py-azure-mgmt-web r-pfam-db
fj py-azure-multiapi-storage r-phangorn
fjcontrib py-azure-nspkg r-phantompeakqualtools
fl py-azure-storage-common r-pheatmap
flac py-azure-storage-nspkg r-philentropy
flann py-azureml-automl-core r-phylobase
flash py-azureml-core r-phyloseq
flatbuffers py-azureml-dataprep r-phylostratr
flatcc py-azureml-dataprep-native r-phytools
flcl py-azureml-dataprep-rslex r-picante
flecsale py-azureml-dataset-runtime r-pillar
flecsi py-azureml-pipeline r-pinfsc50
flecsph py-azureml-pipeline-core r-pixmap
flex py-azureml-pipeline-steps r-pkgbuild
flexi py-azureml-sdk r-pkgconfig
flexiblas py-azureml-telemetry r-pkgload
flibcpp py-azureml-train r-pkgmaker
flink py-azureml-train-automl-client r-plogr
flint py-azureml-train-core r-plot3d
flit py-azureml-train-restclients-hyperdrive r-plotly
fltk py-babel r-plotmo
flume py-backcall r-plotrix
flux-core py-backports-abc r-pls
flux-sched py-backports-functools-lru-cache r-plyr
fluxbox py-backports-lzma r-pmcmr
fmt py-backports-shutil-get-terminal-size r-png
foam-extend py-backports-ssl-match-hostname r-polspline
folly py-backports-tempfile r-polyclip
font-util py-backports-weakref r-polynom
fontcacheproto py-basemap r-pool
fontconfig py-bash-kernel r-popgenome
fontsproto py-basis-set-exchange r-popvar
fonttosfnt py-bayesian-optimization r-powerlaw
form py-bcbio-gff r-prabclus
fortran py-bcolz r-pracma
fortrilinos py-bcrypt r-praise
foundationdb py-beancount r-preprocesscore
fox py-beautifulsoup4 r-prettyunits
fp16 py-bigfloat r-proc
fpc py-billiard r-processx
fping py-binaryornot r-prodlim
fplll py-bintrees r-progress
fpocket py-binwalk r-proj
fqtrim py-biom-format r-proj4
fr-hit py-biomine r-promises
fraggenescan py-biopandas r-protgenerics
freebayes py-biopython r-proto
freeglut py-bitarray r-proxy
freeimage py-bitstring r-pryr
freeipmi py-black r-ps
freetype py-bleach r-pscbs
freexl py-blessed r-pspline
fribidi py-blessings r-psych
frontier-client py-blinker r-ptw
frontistr py-blis r-purrr
fseq py-blosc r-qs
fsl py-bmap-tools r-qtl
fslsfonts py-bokeh r-quadprog
fstobdf py-boltons r-quantmod
fstrack py-boom-boot-manager r-quantreg
ftgl py-boto r-quantro
ftk py-boto3 r-quickplot
fujitsu-fftw py-botocore r-qvalue
fujitsu-mpi py-bottle r-r-cache
fujitsu-ssl2 py-bottleneck r-r-methodss3
fullock py-breakseq2 r-r-oo
funhpc py-breathe r-r-utils
fuse-overlayfs py-brian r-r6
fyba py-brian2 r-randomfields
fzf py-brotlipy r-randomfieldsutils
g2o py-bsddb3 r-randomforest
g4abla py-bx-python r-randomglm
g4emlow py-bz2file r-ranger
g4ensdfstate py-cached-property r-rann
g4incl py-cachetools r-rapiserialize
g4ndl py-cairocffi r-rappdirs
g4neutronxs py-cantoolz r-raster
g4particlexs py-cartopy r-rbgl
g4photonevaporation py-catalogue r-rbibutils
g4pii py-catkin-pkg r-rbokeh
g4radioactivedecay py-cclib r-rcmdcheck
g4realsurface py-cdat-lite r-rcolorbrewer
g4saiddata py-cdo r-rcpp
g4tendl py-cdsapi r-rcppannoy
gamess-ri-mp2-miniapp py-cekit r-rcpparmadillo
gams py-celery r-rcppblaze
ganglia py-certifi r-rcppcctz
gapbs py-certipy r-rcppcnpy
gapcloser py-cf-units r-rcppdate
gapfiller py-cffi r-rcppeigen
gasnet py-cfgrib r-rcpphnsw
gate py-cfgv r-rcppparallel
gatepet2stir py-cftime r-rcppprogress
gatetools py-chai r-rcurl
gatk py-chainer r-rda
gaudi py-chainmap r-rdpack
gaussian py-chalice r-readbitmap
gaussian-src py-chardet r-readr
gaussian-view py-charm4py r-readxl
gawk py-checkm-genome r-recipes
gblocks py-cheetah r-registry
gcc py-cheetah3 r-rematch
gccmakedep py-cheroot r-rematch2
gccxml py-cherrypy r-remotes
gchp py-chronyk r-reordercluster
gconf py-cinema-lib r-reportingtools
gcta py-cinemasci r-repr
gdal py-click r-reprex
gdb py-click-didyoumean r-reproducible
gdbm py-click-plugins r-require
gdk-pixbuf py-click-repl r-reshape
gdl py-cligj r-reshape2
gdrcopy py-clint r-reticulate
geant4 py-clipboard r-rex
geant4-data py-cloudpickle r-rferns
geant4-vmc py-clustershell r-rgdal
gearshifft py-cmake r-rgenoud
gemmlowp py-cmake-format r-rgeos
genemark-et py-cmocean r-rgexf
genesis py-cnvkit r-rgl
genfit py-coapthon3 r-rgooglemaps
gengetopt py-codecov r-rgraphviz
genie py-cogent r-rhdf5
genomefinisher py-coilmq r-rhdf5filters
genometools py-colorama r-rhdf5lib
genomeworks py-colored r-rhmmer
genrich py-colored-traceback r-rhtslib
geode py-coloredlogs r-rinside
geoip py-colorful r-rio
geoip-api-c py-colorlog r-rjags
geopm py-colormath r-rjava
geos py-colorpy r-rjson
gettext py-colorspacious r-rjsonio
gflags py-commonmark r-rlang
ghost py-configargparse r-rle
ghostscript py-configobj r-rmariadb
ghostscript-fonts py-configparser r-rmarkdown
giflib py-contextily r-rminer
ginac py-contextlib2 r-rmpfr
ginkgo py-contextvars r-rmpi
giraph py-convertdate r-rms
git py-cookiecutter r-rmutil
git-fat-git py-counter r-rmysql
git-imerge py-cov-core r-rnaseqmap
git-lfs py-coverage r-rncl
gitconddb py-cppheaderparser r-rnexml
gl2ps py-crcmod r-rngtools
glew py-crispresso r-rnoaa
glfmultiples py-crossmap r-robust
glfw py-cryptography r-robustbase
glib py-cssselect r-roc
glib-networking py-csvkit r-rocr
glibmm py-cudf r-rodbc
glimmer py-cuml r-rook
glm py-cupy r-rots
global py-current r-roxygen2
globalarrays py-cutadapt r-rpart
glog py-cvxopt r-rpart-plot
gloo py-cvxpy r-rpostgresql
glpk py-cycler r-rprojroot
glproto py-cymem r-rrblup
glusterfs py-cyordereddict r-rrcov
glvis py-cython r-rrpp
gmake py-cython-bbox r-rsamtools
gmap-gsnap py-cyvcf2 r-rsnns
gmime py-d2to1 r-rsolnp
gmodel py-dadi r-rspectra
gmp py-dask r-rsqlite
gmsh py-dask-glm r-rstan
gmt py-dask-ml r-rstantools
gmtsar py-dask-sphinx-theme r-rstatix
gnat py-dask-xgboost r-rstudioapi
gnome-common py-dataclasses r-rsvd
gnupg py-dateparser r-rtracklayer
gnuplot py-dbf r-rtsne
gnuradio py-dbfread r-runit
gnutls py-deap r-rvcheck
go py-decorator r-rversions
go-bootstrap py-deeptools r-rvest
go-md2man py-deeptoolsintervals r-rzmq
gobject-introspection py-defusedxml r-s2
goblin-hmc-sim py-dendropy r-s4vectors
googletest py-deprecated r-samr
gosam-contrib py-deprecation r-sandwich
gotcha py-descartes r-satellite
gource py-devlib r-scales
gpdb py-dgl r-scater
gperf py-dictdiffer r-scattermore
gperftools py-dill r-scatterpie
gpgme py-discover r-scatterplot3d
gpi-2 py-diskcache r-scrime
gplates py-distributed r-sctransform
gprolog py-distro r-scuttle
gpu-burn py-django r-sdmtools
gqrx py-dlcpar r-segmented
gr-osmosdr py-dm-tree r-selectr
grabix py-dnaio r-seqinr
grace py-docker r-seqlogo
grackle py-dockerpy-creds r-servr
gradle py-docopt r-sessioninfo
grads py-docutils r-seurat
grafana py-docutils-stubs r-sf
grandr py-dominate r-sfsmisc
graph500 py-dotnetcore2 r-shadowtext
graphblast py-doxypy r-shape
graphicsmagick py-doxypypy r-shiny
graphite2 py-dp-gp-cluster r-shinydashboard
graphlib py-dpath r-shinyfiles
graphmap py-drmaa r-shortread
graphviz py-dryscrape r-siggenes
grass py-dulwich r-simpleaffy
graylog2-server py-dvc r-singlecellexperiment
grep py-dxchange r-sitmo
grib-api py-dxfile r-sm
gridlab-d py-earthengine-api r-smoof
grnboost py-easybuild-easyblocks r-sn
groff py-easybuild-easyconfigs r-snakecase
gromacs py-easybuild-framework r-snow
grpc py-ecdsa r-snowfall
gsettings-desktop-schemas py-ecos r-snprelate
gsl py-edffile r-snpstats
gslib py-editdistance r-som
gtk-doc py-eg r-somaticsignatures
gtkmm py-elasticsearch r-sourcetools
gtkorvo-atl py-elephant r-sp
gtkorvo-cercs-env py-emcee r-spacetime
gtkorvo-dill py-empy r-spades
gtkorvo-enet py-entrypoints r-spades-addins
gtkplus py-enum34 r-spades-core
gtksourceview py-envisage r-spades-tools
gts py-ephem r-spam
guacamole-client py-epydoc r-sparsem
guacamole-server py-espresso r-sparsematrixstats
guidance py-espressopp r-spatial
guile py-et-xmlfile r-spatialeco
gunrock py-eventlet r-spatialpack
gurobi py-execnet r-spatialreg
gzip py-exodus-bundler r-spatstat
h2database py-extension-helpers r-spatstat-data
h5cpp py-extras r-spatstat-utils
h5hut py-ez-setup r-spdata
h5part py-f90wrap r-spdep
h5utils py-fabric r-speedglm
h5z-zfp py-falcon r-spem
hacckernels py-fallocate r-splancs
hackrf-host py-fastaindex r-splitstackshape
hadoop py-fastavro r-sqldf
hal py-fastcache r-squarem
halc py-fastcluster r-squash
half py-fastdtw r-sseq
hama py-fasteners r-stabledist
hapcut2 py-fastrlock r-stanheaders
hapdip py-faststructure r-stargazer
haploview py-fava r-statmod
haproxy py-fenics-basix r-statnet-common
hardlink py-fenics-dijitso r-stringfish
harfbuzz py-fenics-dolfinx r-stringi
harminv py-fenics-ffc r-stringr
hashcat py-fenics-ffcx r-strucchange
haveged py-fenics-fiat r-subplex
hazelcast py-fenics-instant r-summarizedexperiment
hbase py-fenics-ufl r-suppdists
hbm-dramsim2 py-filelock r-survey
hc py-filemagic r-survival
hcol py-filterpy r-sva
hcoll py-fiona r-svglite
hdf py-fiscalyear r-sys
hdf-eos2 py-fisher r-systemfonts
hdf-eos5 py-fits-tools r-tarifx
hdf5 py-fixtures r-taxizedb
hdf5-blosc py-flake8 r-tclust
hdfview py-flake8-import-order r-teachingdemos
healpix-cxx py-flake8-polyfill r-tensor
heaptrack py-flask r-tensora
heffte py-flask-babel r-tester
helics py-flask-compress r-testit
help2man py-flask-cors r-testthat
henson py-flask-socketio r-tfbstools
hepmc py-flatten-dict r-tfisher
hepmc3 py-flexmock r-tfmpvalue
hepmcanalysis py-flexx r-th-data
heppdt py-flufl-lock r-threejs
heputils py-flye r-tibble
hercules py-fn-py r-tictoc
herwig3 py-fortran-language-server r-tidycensus
herwigpp py-fortranformat r-tidygraph
hevea py-fparser r-tidyr
hibench py-fprettify r-tidyselect
hic-pro py-freezegun r-tidyverse
hicolor-icon-theme py-fsspec r-tiff
highfive py-ftfy r-tigris
highwayhash py-funcsigs r-timedate
hiop py-functools32 r-tinytex
hip py-funcy r-tmixclust
hip-rocclr py-fusepy r-tmvnsim
hipblas py-future r-topgo
hipcub py-futures r-triebeard
hipfort py-fypp r-trimcluster
hipify-clang py-gast r-truncdist
hipsparse py-gcovr r-truncnorm
hipsycl py-gdbgui r-trust
hiredis py-gdc-client r-tseries
hisat2 py-gee-asset-manager r-tsne
hisea py-geeadd r-ttr
hive py-geeup r-tweenr
hivex py-gemini r-txdb-hsapiens-ucsc-hg18-knowngene
hmmer py-genders r-txdb-hsapiens-ucsc-hg19-knowngene
homer py-geneimpacts r-tximport
hoomd-blue py-genshi r-tximportdata
hotspot py-gensim r-ucminf
hpcc py-geoalchemy2 r-udunits2
hpccg py-geographiclib r-units
hpcg py-geopandas r-upsetr
hpctoolkit py-geoplot r-urca
hpcviewer py-geopy r-urltools
hpgmg py-gevent r-usethis
hping py-gf256 r-utf8
hpl py-gffutils r-uuid
hpx py-git-review r-uwot
hpx5 py-gitdb r-v8
hsa-rocr-dev py-gitpython r-variantannotation
hsakmt py-gluoncv r-varselrf
hsakmt-roct py-gnuplot r-vcd
hsf-cmaketools py-goatools r-vcfr
hssp py-google r-vctrs
hstr py-google-api-core r-vegan
htop py-google-api-python-client r-vfs
htslib py-google-auth r-vgam
http-get py-google-auth-httplib2 r-vioplot
http-load py-google-auth-oauthlib r-vipor
http-parser py-google-cloud-core r-viridis
http-ping py-google-cloud-storage r-viridislite
http-post py-google-pasta r-visnetwork
httpd py-google-resumable-media r-vsn
httperf py-googleapis-common-protos r-waldo
httpie py-googledrivedownloader r-watermelon
httping py-gosam r-webshot
httpress py-gpaw r-wgcna
hub py-gpustat r-whisker
hudi py-gputil r-withr
hugo py-gpy r-wk
hunspell py-gpytorch r-xde
hw-probe py-gql r-xfun
hwdata py-grandalf r-xgboost
hwloc py-graphql-core r-xlconnect
hybpiper py-graphviz r-xlconnectjars
hybrid-lambda py-greenlet r-xlsx
hybridsim py-grequests r-xlsxjars
hydra py-griddataformats r-xmapbridge
hydrogen py-grpcio r-xml
hyperscan py-gsd r-xml2
hyphen py-gsi r-xnomial
hyphy py-guidata r-xopen
hypre py-guiqwt r-xtable
i3 py-h11 r-xts
ibm-databroker py-h2 r-xvector
ibm-java py-h5glance r-yaimpute
ibmisc py-h5netcdf r-yaml
icarus py-h5py r-yapsa
iceauth py-h5sh r-yaqcaffy
icedtea py-hacking r-yarn
icet py-hatchet r-zcompositions
ico py-hdbscan r-zeallot
icu4c py-hdfs r-zip
id3lib py-healpy r-zlibbioc
idba py-heapdict r-zoo
idl py-hepdata-validator r3d
iegenlib py-hepunits rabbitmq
ignite py-hieroglyph racon
igprof py-hiredis raft
igraph py-holland-backup ragel
igv py-horovod raja
igvtools py-hpack ramulator
ike-scan py-hpcbench randfold
ilmbase py-hpccm random123
imagemagick py-hstspreload randrproto
imake py-html2text range-v3
imlib2 py-html5lib rankstr
imp py-htmlgen rapidjson
impute2 py-htseq raptor2
infernal py-httpbin rasdaemon
influxdb py-httpcore rasqal
iniparser py-httplib2 ravel
inputproto py-httptools raxml
intel py-httpx raxml-ng
intel-daal py-humanfriendly ray
intel-gpu-tools py-humanize rccl
intel-ipp py-hvac rclone
intel-llvm py-hyperframe rdc
intel-mkl py-hyperopt rdma-core
intel-mpi py-hypothesis rdp-classifier
intel-mpi-benchmarks py-ics rdptools
intel-oneapi-ccl py-identify re2
intel-oneapi-compilers py-idna re2c
intel-oneapi-dal py-idna-ssl readfq
intel-oneapi-dnn py-illumina-utils readline
intel-oneapi-ipp py-ilmbase recon
intel-oneapi-ippcp py-imageio recorder
intel-oneapi-mkl py-imageio-ffmpeg recordproto
intel-oneapi-mpi py-imagesize redis
intel-oneapi-tbb py-iminuit reditools
intel-oneapi-vpl py-immutables redland
intel-parallel-studio py-importlib redland-bindings
intel-pin py-importlib-metadata redset
intel-tbb py-importlib-resources redundans
intel-xed py-inference-schema reframe
interproscan py-inheritance regcm
intltool py-iniconfig relax
ioapi py-iniparse relion
ior py-intel-openmp remhos
iozone py-intervaltree rempi
ipcalc py-invoke rename
iperf2 py-iocapture rendercheck
iperf3 py-ipaddress renderproto
ipopt py-ipdb repeatmasker
iproute2 py-ipykernel repeatmodeler
iptraf-ng py-ipyparallel repeatscout
iq-tree py-ipython resourceproto
isaac py-ipython-cluster-helper revbayes
isaac-server py-ipython-genutils revocap-coupler
isc-dhcp py-ipywidgets revocap-refiner
isescan py-irpf90 rgb
isl py-isodate rhash
iso-codes py-isort rinetd
ispc py-itk ripgrep
istio py-itsdangerous rivet
itensor py-jaraco-functools rlwrap
itk py-javaproperties rmats
itstool py-jdatetime rmlab
itsx py-jdcal rna-seqc
iwyu py-jedi rnaquast
jackcess py-jeepney rnaz
jafka py-jellyfish rng-tools
jags py-jinja2 rngstreams
jali py-jinja2-time rocalution
jansi py-jmespath rocblas
jansi-native py-joblib rocfft
jansson py-jplephem rocketmq
jasper py-jprops rocksdb
jbigkit py-jpype1 rockstar
jblob py-jsmin rocm-bandwidth-test
jchronoss py-json-get rocm-clang-ocl
jdk py-json5 rocm-cmake
jellyfish py-jsondiff rocm-dbgapi
jemalloc py-jsonpatch rocm-debug-agent
jetty-project py-jsonpath-ng rocm-device-libs
jhpcn-df py-jsonpickle rocm-gdb
jimtcl py-jsonpointer rocm-opencl
jline3 py-jsonref rocm-opencl-runtime
jmol py-jsonschema rocm-openmp-extras
jose py-junit-xml rocm-smi
jpegoptim py-jupyter rocm-smi-lib
jq py-jupyter-client rocm-tensile
json-c py-jupyter-console rocm-validation-suite
json-cwx py-jupyter-core rocminfo
json-fortran py-jupyterhub rocprim
json-glib py-jupyterlab rocprofiler-dev
jsoncpp py-jupyterlab-pygments rocrand
jstorm py-jupyterlab-server rocsolver
jube py-keras rocsparse
judy py-keras-applications rocthrust
julea py-keras-preprocessing roctracer-dev
julia py-kerberos rodinia
junit4 py-keyring root
k8 py-kitchen rose
kafka py-kiwisolver ross
kahip py-kmodes routino
kaiju py-knack rpcsvc-proto
kaks-calculator py-kombu rpm
kaldi py-labours rr
kallisto py-lap rrdtool
karma py-lark-parser rsbench
kassiopeia py-latexcodec rsem
kbd py-lazy rstart
kbproto py-lazy-object-proxy rsync
kcov py-lazy-property rsyslog
kdiff3 py-lazyarray rt-tests
kea py-leather rtags
kealib py-lerc rtax
keepalived py-libconf ruby
keepassxc py-libensemble ruby-asciidoctor
kentutils py-librosa ruby-erubis
keyutils py-lifelines ruby-gnuplot
kibana py-lightgbm ruby-hpricot
kicad py-ligo-segments ruby-mustache
kim-api py-line-profiler ruby-narray
kinesis py-linecache2 ruby-rake
kitty py-lit ruby-rdiscount
kmergenie py-llvmlite ruby-ronn
kmod py-lmfit ruby-rubyinline
knem py-lmodule ruby-svn2git
kokkos py-localcider ruby-terminal-table
kokkos-kernels py-locket ruby-thor
kokkos-kernels-legacy py-lockfile ruby-tmuxinator
kokkos-legacy py-logilab-common ruby-unicode-display-width
kokkos-nvcc-wrapper py-louie ruby-xdg
kraken py-lru-dict ruby-zentest
kraken2 py-lscsoft-glue rust
krb5 py-luigi rust-bindgen
krims py-lxml sabre
kripke py-lz4 saga-gis
kubernetes py-lzstring sailfish
kvasir-mpl py-m2r salmon
kvtree py-macholib salmon-tddft
kylin py-machotools sambamba
ladot py-macs2 samblaster
laghos py-maestrowf samrai
lame py-magic samtools
lammps py-mailchecker sandbox
lapackpp py-mako satsuma2
last py-mapclassify savanna
lastz py-markdown saws
laszip py-markdown2 sblim-sfcc
latte py-markovify sbml
launchmon py-markupsafe sbt
lazyten py-matplotlib scala
lbann py-mayavi scalasca
lbxproxy py-mccabe scallop
lbzip2 py-mdanalysis scalpel
lcals py-mechanize scan-for-matches
lcio py-memory-profiler scantailor
lcms py-memprof scipoptsuite
lcov py-mercantile scons
ldak py-merlin scorec-core
ldc py-metasv scorep
ldc-bootstrap py-methylcode scotch
legion py-metpy scr
lemon py-mg-rast-tools screen
leptonica py-mido scripts
less py-mikado scrnsaverproto
lesstif py-minrpc scs
leveldb py-misopy sctk
lftp py-mistune sdl2
lhapdf py-mixedhtseq sdl2-image
lhapdf5 py-mlperf-logging sdsl-lite
libabigail py-mlxtend seacas
libaec py-mmcv sed
libaio py-mmtf-python sensei
libao py-mo-pack sentencepiece
libapplewm py-mock sentieon-genomics
libapreq2 py-modred seqan
libarchive py-moltemplate seqkit
libasr py-monotonic seqprep
libassuan py-monty seqtk
libatasmart py-more-itertools serf
libatomic-ops py-motmetrics sessreg
libbacktrace py-moviepy setserial
libbeagle py-mpi4py setxkbmap
libbeato py-mpld3 sfcgal
libbinio py-mpmath sga
libblastrampoline py-msal sgpp
libbsd py-msal-extensions shadow
libbson py-msgpack shapeit
libbytesize py-msgpack-numpy shapeit4
libc py-msrest shapelib
libcanberra py-msrestazure shared-mime-info
libcap py-multi-key-dict shark
libcap-ng py-multidict shc
libceed py-multipledispatch shengbte
libcerf py-multiprocess shiny-server
libcgroup py-multiqc shiro
libcint py-munch shocklibs
libcircle py-murmurhash shoremap
libconfig py-mx shortbred
libconfuse py-myhdl shortstack
libcroco py-mypy showfont
libctl py-mypy-extensions shtools
libcudf py-mysql-connector-python shuffile
libcuml py-mysqlclient sickle
libcumlprims py-mysqldb1 siesta
libcyaml py-nanotime signalp
libdaemon py-natsort signify
libdap4 py-nbclient silo
libdatrie py-nbconvert simde
libdivsufsort py-nbformat simgrid
libdmx py-nbsphinx simmetrix-simmodsuite
libdrm py-nc-time-axis simplemoc
libdwarf py-ndg-httpsclient simul
libeatmydata py-neo simulationio
libecpint py-neobolt singularity
libedit py-neotime singularity-legacy
libelf py-nest-asyncio sio
libemos py-nestle sionlib
libepoxy py-netcdf4 sirius
libestr py-netifaces skilion-onedrive
libev py-netket skopeo
libevdev py-networkit sl
libevent py-networkx slang
libevpath py-nltk slate
libexif py-nodeenv sleef
libfabric py-nose slepc
libfastcommon py-nose-cov slf4j
libfastjson py-nose2 slider
libffi py-nosexcover sloccount
libffs py-notebook slurm
libfive py-ntlm-auth smalt
libflame py-numba smartdenovo
libfontenc py-numcodecs smartmontools
libfs py-numexpr smof
libfuse py-numexpr3 smproxy
libfyaml py-numpy snakemake
libgcrypt py-numpydoc snap
libgd py-nvidia-ml-py snap-berkeley
libgeotiff py-nvidia-ml-py3 snap-korf
libgff py-oauth2client snappy
libgit2 py-oauthlib snbone
libgpg-error py-olefile sniffles
libgpuarray py-onnx snpeff
libgridxc py-ont-fast5-api snphylo
libgssglue py-opencensus snptest
libgtextutils py-opencensus-context soapdenovo-trans
libharu py-openmc soapdenovo2
libhbaapi py-openpmd-validator soci
libhio py-openpyxl sofa-c
libhugetlbfs py-openslide-python sollve
libiberty py-opentuner sollya
libibumad py-opppy solr
libical py-opt-einsum somatic-sniper
libice py-or-tools sonlib
libiconv py-ordereddict sortmerna
libid3tag py-oset sosflow
libidl py-osqp source-highlight
libidn2 py-overpy sowing
libimagequant py-owslib sox
libimobiledevice py-pacifica-downloader spades
libint py-pacifica-namespace span-lite
libisal py-pacifica-uploader spark
libiscsi py-packaging sparse
libjpeg py-pager sparsehash
libjpeg-turbo py-palettable sparta
libjson py-pamela spath
libjwt py-pandas spdlog
libkcapi py-pandocfilters specfem3d-globe
libkml py-parameterized spectrum-mpi
libksba py-paramiko speex
liblas py-paramz speexdsp
liblbfgs py-parse spfft
liblbxutil py-parsedatetime spglib
liblockfile py-parso sph2pipe
liblognorm py-partd spherepack
liblouis py-particle spindle
libluv py-path-py spiral
libmacaroons py-pathlib spla
libmad py-pathlib2 spm
libmatheval py-pathos spot
libmaus2 py-pathspec sprng
libmaxminddb py-patsy sqlcipher
libmbim py-pauvre sqlite
libmcrypt py-pbr sqlite-jdbc
libmesh py-pem sqlitebrowser
libmetalink py-pep8 sqoop
libmicrohttpd py-pep8-naming squashfs
libmmtf-cpp py-performance squashfuse
libmng py-periodictable squid
libmnl py-petastorm sratoolkit
libmo-unpack py-petsc4py srilm
libmodbus py-pexpect sse2neon
libmonitor py-phonenumbers sshfs
libmpdclient py-phonopy sshpass
libnbc py-pickleshare ssht
libndp py-picmistandard ssmtp
libnet py-picrust sspace-longread
libnetfilter-conntrack py-picrust2 sspace-standard
libnetfilter-cthelper py-pid sst-core
libnetfilter-cttimeout py-pil sst-dumpi
libnetfilter-queue py-pillow sst-elements
libnetworkit py-pillow-simd sst-macro
libnfnetlink py-pint sst-transports
libnfs py-pip stacks
libnfsidmap py-pipits staden-io-lib
libnftnl py-pispino star
libnl py-pkgconfig star-ccm-plus
libnotify py-pkginfo startup-notification
libnova py-plac stat
libnrm py-planar stata
libnsl py-planet static-analysis-suite
libogg py-plotly stc
liboldx py-pluggy steps
libopts py-ply stinger
libp11 py-pmw storm
libpam py-pomegranate stow
libpaper py-pooch strace
libpcap py-portalocker stream
libpciaccess py-portend strelka
libpeas py-poster stress
libpfm4 py-pox stress-ng
libpipeline py-poyo string-view-lite
libplist py-ppft stringtie
libpmemobj-cpp py-pre-commit stripack
libpng py-preshed structure
libproxy py-prettytable strumpack
libpsl py-profilehooks su2
libpthread-stubs py-proglog sublime-text
libpulsar py-progress subread
libqglviewer py-progressbar2 subversion
libqrencode py-projectq suite-sparse
libquo py-prometheus-client sumaclust
librdkafka py-prompt-toolkit sumo
librelp py-protobuf sundials
libristra py-psutil superchic
librmm py-psyclone superlu
librom py-psycopg2 superlu-dist
librsb py-ptyprocess superlu-mt
librsvg py-pudb supernova
librtlsdr py-pure-eval sw4lite
libsakura py-pure-sasl swap-assembler
libsamplerate py-py swarm
libseccomp py-py-cpuinfo swfft
libsecret py-py-spy swftools
libsharp py-py2bit swiftsim
libshm py-py2cairo swig
libsigcpp py-py2neo swipl
libsigsegv py-py4j symengine
libsm py-py6s symlinks
libsndfile py-pyamg sympol
libsodium py-pyani sysbench
libspatialindex py-pyarrow syscalc
libspatialite py-pyasn1 sysfsutils
libspiro py-pyasn1-modules sysget
libsplash py-pybedtools sysstat
libssh py-pybigwig systemtap
libssh2 py-pybind11 sz
libsvm py-pybtex tabix
libszip py-pybtex-docutils tajo
libtar py-pycairo talass
libtasn1 py-pycares talloc
libtermkey py-pycbc tangram
libthai py-pychecker tantan
libtheora py-pycifrw tar
libtiff py-pycmd targetp
libtirpc py-pycodestyle task
libtlx py-pycosat taskd
libtomlc99 py-pycparser taskflow
libtommath py-pycrypto tasmanian
libtool py-pycuda tassel
libtorrent py-pycurl tau
libtree py-pydap tauola
libuecc py-pydatalog tbl2asn
libunistring py-pydeps tcl
libunwind py-pydicom tcl-itcl
libusb py-pydispatcher tcl-tcllib
libusbmuxd py-pydmd tcl-tclxml
libuser py-pydot tclap
libuuid py-pydot2 tcoffee
libuv py-pydotplus tcpdump
libvdwxc py-pydv tcptrace
libverto py-pyeda tcsh
libvips py-pyelftools tdengine
libvorbis py-pyem tealeaf
libvori py-pyepsg teckit
libvterm py-pyface tecplot
libwebp py-pyfaidx tempestremap
libwebsockets py-pyfasta templight
libwhich py-pyfftw templight-tools
libwindowswm py-pyfiglet tengine
libx11 py-pyfits tensorflow-serving-client
libxau py-pyflakes termcap
libxaw py-pygdal tesseract
libxaw3d py-pygdbmi testdfsio
libxc py-pygelf tetgen
libxcb py-pygeos tethex
libxcomposite py-pygit2 texinfo
libxcrypt py-pyglet texlive
libxcursor py-pygments texstudio
libxdamage py-pygments-pytest textparser
libxdmcp py-pygobject tfel
libxevie py-pygps the-platinum-searcher
libxext py-pygpu the-silver-searcher
libxfixes py-pygresql thepeg
libxfont py-pygtk thornado-mini
libxfont2 py-pygtrie thrift
libxfontcache py-pyheadtail thrust
libxft py-pyinstrument tidy-html5
libxi py-pyinstrument-cext tig
libxinerama py-pyjnius time
libxkbcommon py-pyjwt timedatex
libxkbfile py-pyke timemory
libxkbui py-pykml tinker
libxml2 py-pykwalify tinyxml
libxmu py-pyliblzma tinyxml2
libxp py-pylikwid tioga
libxpm py-pylint tippecanoe
libxpresent py-pylops tiptop
libxprintapputil py-pymatgen tix
libxprintutil py-pymc3 tixi
libxrandr py-pymeeus tk
libxrender py-pyminifier tldd
libxres py-pymol tmalign
libxscrnsaver py-pymongo tmhmm
libxshmfence py-pymorph tmux
libxslt py-pympler tomcat
libxsmm py-pymysql tophat
libxstream py-pynacl totalview
libxt py-pynio tpm2-tss
libxtrap py-pynn tppred
libxtst py-pynvml tracer
libxv py-pyodbc transabyss
libxvmc py-pyomo transdecoder
libxxf86dga py-pyopencl transposome
libxxf86misc py-pyopenssl transrate
libxxf86vm py-pypar transset
libyaml py-pyparsing trapproto
libyogrt py-pypeflow tree
libzip py-pypeg2 treelite
libzmq py-pyperclip treesub
liggghts py-pyperf trf
lighttpd py-pyprecice triangle
ligra py-pyprof2html trident
likwid py-pyproj trilinos
linkphase3 py-pyqi trilinos-catalyst-ioss-adapter
linktest py-pyqt4 trimal
linsys-v py-pyqt5 trimgalore
linux-headers py-pyquaternion trimmomatic
linux-pam py-pyrad trinity
lis py-pyrosar trinotate
listres py-pyrsistent trnascan-se
lizard py-pysam tskit
lksctp-tools py-pyscaf tulip
llvm py-pyscf turbine
llvm-amdgpu py-pyserial turbomole
llvm-doe py-pyshp turnserver
llvm-openmp py-pyside tut
llvm-openmp-ompt py-pyside2 twm
lm-sensors py-pysmartdl tycho2
lmbench py-pysocks typhon
lmdb py-pysolar typhonio
lmod py-pyspark uchardet
lndir py-pysqlite ucx
log4c py-pytailf udunits
log4cplus py-pytest ufo-core
log4cpp py-pytest-arraydiff ufo-filters
log4cxx py-pytest-benchmark umap
logrotate py-pytest-cache umesimd
logstash py-pytest-check-links umoci
loki py-pytest-cov umpire
looptools py-pytest-cpp unblur
lordec py-pytest-doctestplus uncrustify
lp-solve py-pytest-flake8 unibilium
lrslib py-pytest-flakes unifdef
lrzip py-pytest-forked unifyfs
lsf py-pytest-html unigen
lshw py-pytest-httpbin unison
lsof py-pytest-isort units
lsscsi py-pytest-metadata unittest-cpp
ltp py-pytest-mock universal-ctags
ltr-retriever py-pytest-mypy unixodbc
ltrace py-pytest-openfiles unqlite
lua py-pytest-pep8 unrar
lua-bitlib py-pytest-qt unuran
lua-lpeg py-pytest-runner unzip
lua-luafilesystem py-pytest-timeout upcxx
lua-luajit py-pytest-xdist uqtk
lua-luaposix py-python-benedict uriparser
lua-mpack py-python-box usbutils
lucene py-python-certifi-win32 usearch
luit py-python-daemon userspace-rcu
lulesh py-python-dateutil utf8proc
lumpy-sv py-python-docs-theme util-linux
lustre py-python-editor util-linux-uuid
lvarray py-python-engineio util-macros
lvm2 py-python-fmask uvw
lwgrp py-python-fsutil valgrind
lwm2 py-python-gitlab vampirtrace
lxc py-python-igraph vapor
lynx py-python-jenkins vardictjava
lz4 py-python-json-logger variorum
lzma py-python-ldap varnish-cache
lzo py-python-levenshtein varscan
lzop py-python-logstash vasp
m4 py-python-louvain vbfnlo
macsio py-python-lzo vc
mad-numdiff py-python-magic vcftools
madgraph5amc py-python-mapnik vcsh
mafft py-python-meep vdt
magics py-python-memcached veccore
magma py-python-oauth2 vecgeom
mahout py-python-rapidjson veclibfort
makedepend py-python-slugify vegas2
maker py-python-socketio veloc
mallocmc py-python-subunit velvet
maloc py-python-swiftclient velvetoptimiser
man-db py-python-utils verilator
manta py-pythonqwt verrou
mapnik py-pythonsollya vesta
mapserver py-pytimeparse vgm
mapsplice2 py-pytools videoproto
maq py-pytorch-gradual-warmup-lr viennarna
margo py-pytz viewres
mariadb py-pyudev vifi
mariadb-c-client py-pyugrid vigra
mark py-pyutilib vim
masa py-pyvcf virtualgl
masurca py-pywavelets virtuoso
mathematica py-pywcs visit
matio py-pyyaml vizglow
matlab py-pyzmq vmatch
maven py-qsymm vmc
maverick py-qtawesome vmd
mawk py-qtconsole volk
mbdyn py-qtpy voropp
mbedtls py-quantities votca-csg
mc py-quast votca-csg-tutorials
mcl py-queryablelist votca-csgapps
mcpp py-questionary votca-ctp
mcutils py-radical-utils votca-tools
mdtest py-ranger-fm votca-xtp
med py-rasterio vpfft
meep py-ratelim vpic
mefit py-raven vsearch
megadock py-ray vsftpd
megahit py-rbtools vt
memaxes py-rdflib vtable-dumper
memcached py-readme-renderer vtk
meme py-recommonmark vtk-h
memkind py-redis vtk-m
memsurfer py-regex vvtest
memtester py-reportlab w3m
meraculous py-repoze-lru wannier90
mercurial py-reproject warpx
mercury py-requests watch
mesa py-requests-futures wayland
mesa-demos py-requests-mock wayland-protocols
mesa-glu py-requests-ntlm wcs
mesa18 py-requests-oauthlib wcslib
meshkit py-requests-toolbelt webbench
meson py-resampy weechat
mesquite py-restview weighttp
metabat py-resultsfile wget
metall py-retrying wgsim
metaphysicl py-rfc3986 which
metis py-rich whizard
mfem py-rios windowswmproto
mg py-rise wireshark
mgis py-rmm wonton
microbiomeutil py-rnacocktail wordnet
migraphx py-robotframework workrave
migrate py-rope wps
mii py-rosdep wrf
minced py-rosdistro wrk
mindthegap py-rosinstall wsmancli
miniaero py-rosinstall-generator wt
miniamr py-rospkg wtdbg2
miniasm py-rpy2 wxpropgrid
miniconda2 py-rq wxwidgets
miniconda3 py-rsa x11perf
minife py-rseqc xabclib
miniforge3 py-rtree xapian-core
minigan py-ruamel-ordereddict xauth
minighost py-ruamel-yaml xbacklight
minigmg py-ruamel-yaml-clib xbiff
minimap2 py-s3cmd xbitmaps
minimd py-s3fs xbraid
minio py-s3transfer xcalc
miniqmc py-sacremoses xcb-demo
minisign py-saga-python xcb-proto
minismac2d py-sanic xcb-util
minitri py-scandir xcb-util-cursor
minivite py-scientificpython xcb-util-errors
minixyce py-scikit-build xcb-util-image
minizip py-scikit-fmm xcb-util-keysyms
minuit py-scikit-image xcb-util-renderutil
miopen-hip py-scikit-learn xcb-util-wm
miopen-opencl py-scikit-optimize xcb-util-xrm
miopengemm py-scipy xcfun
mira py-scoop xclip
miranda py-scp xclipboard
mirdeep2 py-scs xclock
mitofates py-seaborn xcmiscproto
mitos py-secretstorage xcmsdb
mivisionx py-selenium xcompmgr
mixcr py-semantic-version xconsole
mkfontdir py-semver xcursor-themes
mkfontscale py-send2trash xcursorgen
mlhka py-sentencepiece xdbedizzy
mlocate py-sentry-sdk xdelta
mlperf-deepcam py-seriate xditview
mmg py-setproctitle xdm
mmv py-setuptools xdmf3
moab py-setuptools-git xdotool
mochi-margo py-setuptools-rust xdpyinfo
modern-wheel py-setuptools-scm xdriinfo
modylas py-setuptools-scm-git-archive xedit
mofem-cephas py-sfepy xerces-c
mofem-fracture-module py-sgp4 xeus
mofem-minimal-surface-equation py-sh xev
mofem-users-modules py-shapely xextproto
mokutil py-shiboken xeyes
molcas py-shortuuid xf86bigfontproto
molden py-shroud xf86dga
mongo-c-driver py-shtab xf86dgaproto
mongo-cxx-driver py-simplegeneric xf86driproto
mongodb-async-driver py-simplejson xf86miscproto
mono py-simplekml xf86rushproto
montage py-singledispatch xf86vidmodeproto
moosefs py-sip xfd
moreutils py-six xfindproxy
mosh py-slepc4py xfontsel
mothur py-slurm-pipeline xforms
motif py-smart-open xfs
motioncor2 py-smmap xfsdump
mount-point-attributes py-snappy xfsinfo
mozjs py-sncosmo xfsprogs
mpark-variant py-sniffio xfwp
mpas-model py-snowballstemmer xgamma
mpc py-snuggs xgboost
mpdecimal py-sonlib xgc
mpe2 py-sortedcollections xhmm
mpest py-sortedcontainers xhost
mpfi py-soundfile xineramaproto
mpfr py-soupsieve xinit
mpi-bash py-spacy xinput
mpich py-spacy-models-en-core-web-sm xios
mpifileutils py-spacy-models-en-vectors-web-lg xkbcomp
mpilander py-sparse xkbdata
mpileaks py-spatialist xkbevd
mpip py-spatialite xkbprint
mpir py-spdlog xkbutils
mpix-launch-swift py-spectra xkeyboard-config
mpt py-spefile xkill
mptensor py-spgl1 xlc
mrbayes py-spglib xlf
mrbench py-sphinx xload
mrchem py-sphinx-bootstrap-theme xlogo
mrcpp py-sphinx-copybutton xlsatoms
mrnet py-sphinx-gallery xlsclients
mrtrix3 py-sphinx-rtd-theme xlsfonts
mscgen py-sphinxautomodapi xmag
msgpack-c py-sphinxcontrib-applehelp xman
mshadow py-sphinxcontrib-bibtex xmessage
msmc py-sphinxcontrib-devhelp xmh
msmc2 py-sphinxcontrib-htmlhelp xmlf90
mstk py-sphinxcontrib-issuetracker xmlrpc-c
mt-metis py-sphinxcontrib-jsmath xmlto
multitail py-sphinxcontrib-mermaid xmodmap
multitime py-sphinxcontrib-programoutput xmore
multiverso py-sphinxcontrib-qthelp xorg-cf-files
mumax py-sphinxcontrib-serializinghtml xorg-docs
mummer py-sphinxcontrib-trio xorg-gtest
mummer4 py-sphinxcontrib-websupport xorg-server
mumps py-spyder xorg-sgml-doctools
munge py-spykeutils xphelloworld
muparser py-sqlalchemy xplor-nih
muscle py-sqlalchemy-utils xplsprinters
muse py-sqlparse xpmem
musl py-srsly xpr
muster py-sshtunnel xprehashprinterlist
mutationpp py-statsmodels xprop
mvapich2 py-stdlib-list xproto
mvapich2-gdr py-stestr xproxymanagementprotocol
mvapich2x py-stevedore xqilla
mxm py-stopit xrandr
mxml py-storm xrdb
mxnet py-stratify xrefresh
mysql py-stsci-distutils xrootd
mysqlpp py-subprocess32 xrx
n2p2 py-subrosa xsbench
nacos py-svgpathtools xscope
nag py-svgwrite xsd
nalu py-symengine xsdk
nalu-wind py-symfit xsdk-examples
namd py-sympy xsdktrilinos
nano py-syned xset
nanoflann py-systemd-python xsetmode
nanomsg py-tables xsetpointer
nanopb py-tabulate xsetroot
nasm py-tap-py xsimd
nauty py-tatsu xsm
nbdkit py-tblib xstdcmap
ncbi-magicblast py-tempora xtensor
ncbi-rmblastn py-tensorboard xtensor-python
ncbi-toolkit py-tensorboard-plugin-wit xterm
nccl py-tensorboardx xtl
nccl-tests py-tensorflow xtrans
nccmp py-tensorflow-estimator xtrap
ncdu py-tensorflow-probability xts
ncftp py-termcolor xvidtune
ncl py-terminado xvinfo
nco py-testfixtures xwd
ncompress py-testinfra xwininfo
ncurses py-testpath xwud
ncview py-testrepository xxhash
ndiff py-testresources xyce
neartree py-testscenarios xz
nek5000 py-testtools yajl
nekbone py-tetoolkit yambo
nekcem py-text-unidecode yaml-cpp
nekrs py-textblob yara
nektar py-texttable yarn
nektools py-tfdlpack yasm
neo4j py-theano ycsb
neovim py-thinc yoda
nest py-thirdorder yorick
net-snmp py-threadpoolctl z-checker
netcdf-c py-tifffile z3
netcdf-cxx py-tinyarray zabbix
netcdf-cxx4 py-tokenizers zfp
netcdf-fortran py-toml zfs
netdata py-tomlkit zig
netgauge py-tomopy zip
netgen py-toolz zipkin
netkit-ftp py-torch zlib
netlib-lapack py-torch-cluster zlib-ng
netlib-scalapack py-torch-geometric zoltan
netlib-xblas py-torch-nvidia-apex zookeeper
netperf py-torch-scatter zookeeper-benchmark
nettle py-torch-sparse zsh
neuron py-torch-spline-conv zstd
newt py-torchaudio zstr
nextflow py-torchfile zziplib
nfft py-torchsummary None
nfs-ganesha py-torchtext None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Link Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.1.4, 2.0.2, 1.5.2
Build Dependencies:
autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
master, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Link Dependencies:
cuda, boost, dd4hep, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.1, 0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 0.9.2, 0.9.1
Build Dependencies:
exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0, xsdk-0.2.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amdblis

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
blas
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
develop, master, 0.1.0
Build Dependencies:
numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Link Dependencies:
blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind. AMP can be used to build powerful and flexible multi-physics simulation algorithms from lightweight operator, solver, linear algebra, material database, discretization, and meshing components. The AMP design is meant to enable existing investments in application codes to be leveraged without having to adopt dramatically different data structures while developing new computational science applications. Application components are represented as discrete mathematical operators that only require a minimal interface and through operator composition the incremental development of complex parallel applications is enabled. AMP is meant to allow application domain scientists, computer scientists and mathematicians to simulate, collaborate, and conduct research on various aspects of massively parallel simulation algorithms.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
cuda, cmake, mpi, amrex, hypre, netcdf-c, masa, openfast
Link Dependencies:
cuda, mpi, amrex, hypre, netcdf-c, masa, openfast
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : http://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, mesa18, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
mesa18, elfutils, libffi
Run Dependencies:
py-wheel, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, rocm-gdb
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake, binutils, boost, activeharmony, ompt-openmp
Link Dependencies:
binutils, boost, activeharmony, ompt-openmp
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.5
Build Dependencies:
cuda, cmake, nlohmann-json, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, nlohmann-json, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy, py-pybind11
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.0, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
m4, autoconf, automake, libtool, valgrind
Link Dependencies:
valgrind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
20.2.1
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
21.0
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.0.3, 9.0.2
Build Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.0.1, 4.0.1
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake
Link Dependencies:
comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Run Dependencies:
perl
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59, 2.13
Build Dependencies:
help2man, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.16.1
Build Dependencies:
m4, autoconf, automake, libtool, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

bash

Homepage:
Spack package:
Versions:
5.0, 4.4, 4.3
Build Dependencies:
ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.0, 7.6.0, 7.4.4
Build Dependencies:
libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, python
Link Dependencies:
zlib
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Description:
Oracle Berkeley DB

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
diffutils, m4, perl, help2man
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blaspp

Homepage:
Spack package:
Versions:
master, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
cuda, cmake, blas, llvm-openmp
Link Dependencies:
cuda, blas, llvm-openmp
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main
Build Dependencies:
autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, zlib
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Description:
A Binary Decision Diagram library.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

cabana

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, kokkos-legacy, kokkos, mpi
Link Dependencies:
kokkos-legacy, kokkos, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cmake, boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
cairo, libsigcpp
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cuda, cmake, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow, python
Link Dependencies:
cuda, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cub
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.8.0, 0.7.0
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai, cub
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0-alpha2, 4.0-alpha1, 3.11.6, 3.11.5
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ use case library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.0-preview3, 2.13.4, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cbflib

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
m4
Description:
CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
rpcsvc-proto, libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elf, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
rpcsvc-proto, libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains the Krell Institute contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package:
Versions:
3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
gperf, libxslt, zlib
Link Dependencies:
gperf, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.5, 2.4
Build Dependencies:
cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccls

Homepage:
Spack package:
Versions:
0.20201025
Build Dependencies:
cmake, llvm, rapidjson
Link Dependencies:
llvm, rapidjson
Description:
C/C++ language server

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.2.4, 7.2.3, 7.2.2, 7.2.1, 7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94h
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
1.9.10, 1.9.9, 1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
3.0.0, 2.0.0, 1.0.0
Build Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
2.0.0, 1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
3.49, 3.48, 3.47, 3.45, 3.42, 3.41, 3.37
Build Dependencies:
curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
0.7.0
Build Dependencies:
ncurses, readline, flex, bison, texinfo
Link Dependencies:
ncurses, readline
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
autoconf, automake, libtool, m4, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cget

Homepage:
Spack package:
Versions:
0.1.9
Build Dependencies:
python, py-setuptools, py-six, py-click, py-subprocess32
Run Dependencies:
python, py-six, py-click, py-subprocess32
Description:
Cmake package retrieval.

cgl

Homepage:
Spack package:
Versions:
0.60.3
Build Dependencies:
coinutils, osi, clp
Link Dependencies:
coinutils, osi, clp
Description:
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chai

Homepage:
Spack package:
Versions:
develop, master, 2.3.0, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, umpire, raja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, umpire, raja
Description:
Copy-hiding array interface for data migration between memory spaces

changa

Homepage:
Spack package:
Versions:
master, 3.4
Build Dependencies:
charmpp
Link Dependencies:
charmpp
Description:
ChaNGa (Charm N-body GrAvity solver) is a code to perform collisionless N-body simulations. It can perform cosmological simulations with periodic boundary conditions in comoving coordinates or simulations of isolated stellar systems. It also can include hydrodynamics using the Smooth Particle Hydrodynamics (SPH) technique. It uses a Barnes-Hut tree to calculate gravity, with hexadecapole expansion of nodes and Ewald summation for periodic forces. Timestepping is done with a leapfrog integrator with individual timesteps for each particle.

channelflow

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, eigen, fftw, mpi, hdf5, netcdf-c, boost
Link Dependencies:
eigen, fftw, mpi, hdf5, netcdf-c, boost
Description:
Channelflow is a software system for numerical analysis of the incompressible fluid flow in channel geometries, written in C++.

chapel

Homepage:
Spack package:
Versions:
1.20.0, 1.19.0, 1.18.0
Description:
Chapel is a modern programming language that is parallel, productive, portable, scalable and open-source.

charliecloud

Homepage:
Spack package:
Versions:
master, 0.22, 0.21, 0.19, 0.18
Build Dependencies:
m4, autoconf, automake, libtool, rsync, py-sphinx, py-sphinx-rtd-theme
Run Dependencies:
python, py-lark-parser, py-requests
Test Dependencies:
bats
Description:
Lightweight user-defined software stacks for HPC.

charmpp

Homepage:
Spack package:
Versions:
main, 6.10.2, 6.10.1, 6.10.0, 6.9.0, 6.8.2, 6.8.1, 6.8.0, 6.7.1, 6.7.0, 6.6.1, 6.6.0, 6.5.1
Build Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Link Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Description:
Charm++ is a parallel programming framework in C++ supported by an adaptive runtime system, which enhances user productivity and allows programs to run portably from small multicore computers (your laptop) to the largest supercomputers.

chatterbug

Homepage:
Spack package:
Versions:
develop, 1.0
Build Dependencies:
mpi, scorep
Link Dependencies:
mpi, scorep
Description:
A suite of communication-intensive proxy applications that mimic commonly found communication patterns in HPC codes. These codes can be used as synthetic codes for benchmarking, or for trace generation using Score-P / OTF2.

check

Homepage:
Spack package:
Versions:
0.12.0, 0.11.0, 0.10.0
Description:
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

chgcentre

Homepage:
Spack package:
Versions:
1.6
Build Dependencies:
cmake, casacore, gsl
Link Dependencies:
casacore, gsl
Description:
The chgcentre tool can be used to change the phase centre of a measurement set.

chill

Homepage:
Spack package:
Versions:
master, 0.3
Build Dependencies:
boost, rose, autoconf, automake, libtool, m4, iegenlib, bison, flex, python, isl, gmp
Link Dependencies:
python
Run Dependencies:
rose, iegenlib
Description:
A polyheadral compiler for autotuning

chlorop

Homepage:
Spack package:
Versions:
1.1
Run Dependencies:
awk
Description:
Chlorop predicts the presence of chloroplast transit peptides in protein sequences and the location of potential cTP cleavage sites. You will need to obtain the tarball by visiting the URL and completing the form. You can then either run spack install with the tarball in the directory, or add it to a mirror. You will need to set the CHLOROTMP environment variable to the full path of the directory you want chlorop to use as a temporary directory.

chombo

Homepage:
Spack package:
Versions:
develop, 3.2
Build Dependencies:
blas, lapack, gmake, mpi, hdf5
Link Dependencies:
blas, lapack, mpi, hdf5
Description:
The Chombo package provides a set of tools for implementing finite difference and finite-volume methods for the solution of partial differential equations on block-structured adaptively refined logically rectangular (i.e. Cartesian) grids.

chrony

Homepage:
Spack package:
Versions:
3.5.1, 3.5, 3.4, 3.3
Build Dependencies:
ruby-asciidoctor, bison
Link Dependencies:
ruby-asciidoctor
Description:
chrony is a versatile implementation of the Network Time Protocol (NTP). It can synchronise the system clock with NTP servers, reference clocks(e.g. GPS receiver), and manual input using wristwatch and keyboard.

chrpath

Homepage:
Spack package:
Versions:
0.16
Description:
chrpath: Modifies the dynamic library load path (rpath and runpath) of compiled programs and libraries.

cinch

Homepage:
Spack package:
Versions:
master, 1.0
Description:
Cinch is a set of utilities and configuration options designed to make cmake builds easy to use and manage.

cistem

Homepage:
Spack package:
Versions:
1.0.0-beta
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

citcoms

Homepage:
Spack package:
Versions:
master, 3.3.1, 3.2.0
Build Dependencies:
mpi, zlib, automake, autoconf, libtool, m4, hc, cuda, hdf5
Link Dependencies:
mpi, zlib, hc, cuda, hdf5
Run Dependencies:
python
Description:
CitcomS is a finite element code designed to solve compressible thermochemical convection problems relevant to Earth's mantle.

cityhash

Homepage:
Spack package:
Versions:
master, 2013-07-31
Description:
CityHash, a family of hash functions for strings.

ck

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
CK calculates class-level and metric-level code metrics in Java projects by means of static analysis (i.e. no need for compiled code).

clamav

Homepage:
Spack package:
Versions:
0.101.2
Build Dependencies:
pkgconfig, json-c, openssl, pcre, yara, zlib, bzip2
Link Dependencies:
json-c, openssl, pcre, yara, zlib, bzip2, curl
Description:
Open source antivirus engine for detecting trojans, viruses, malware & other malicious threats.

clamr

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, mpi, mpe
Link Dependencies:
mpi, mpe
Description:
The CLAMR code is a cell-based adaptive mesh refinement (AMR) mini-app developed as a testbed for hybrid algorithm development using MPI and OpenCL GPU code.

clapack

Homepage:
Spack package:
Versions:
3.2.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CLAPACK is a f2c'ed version of LAPACK. The CLAPACK library was built using a Fortran to C conversion utility called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain C code, and then modified to improve readability. CLAPACK's goal is to provide LAPACK for someone who does not have access to a Fortran compiler.

clara

Homepage:
Spack package:
Versions:
1.1.5, 1.1.4, 1.1.3, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
A simple to use, composable, command line parser for C++ 11 and beyond.

claw

Homepage:
Spack package:
Versions:
master, 2.0.2, 2.0.1, 2.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0
Build Dependencies:
cmake, ant, bison, flex, java, libxml2
Link Dependencies:
java, libxml2
Description:
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran. From a single source code, it generates architecture specific code decorated with OpenMP or OpenACC

cleaveland4

Homepage:
Spack package:
Versions:
4.4
Build Dependencies:
perl, perl-math-cdf, bowtie, viennarna, r, samtools
Link Dependencies:
bowtie, viennarna, samtools
Run Dependencies:
perl, perl-math-cdf, r
Description:
CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

cleverleaf

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, samrai, hdf5, boost
Link Dependencies:
samrai, hdf5, boost
Description:
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National Laboratory. The primary goal of CleverLeaf is to evaluate the application of AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.

clfft

Homepage:
Spack package:
Versions:
2.12.2
Build Dependencies:
cmake, opencl, boost
Link Dependencies:
opencl, boost
Description:
a software library containing FFT functions written in OpenCL

clhep

Homepage:
Spack package:
Versions:
2.4.4.0, 2.4.1.3, 2.4.1.2, 2.4.1.0, 2.4.0.4, 2.4.0.2, 2.4.0.1, 2.4.0.0, 2.3.4.6, 2.3.4.5, 2.3.4.4, 2.3.4.3, 2.3.4.2, 2.3.3.2, 2.3.3.1, 2.3.3.0, 2.3.2.2, 2.3.1.1, 2.3.1.0, 2.3.0.0, 2.2.0.8, 2.2.0.5, 2.2.0.4
Build Dependencies:
cmake
Description:
CLHEP is a C++ Class Library for High Energy Physics.

cli11

Homepage:
Spack package:
Versions:
1.9.1
Build Dependencies:
cmake
Description:
CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

clinfo

Homepage:
Spack package:
Versions:
2.2.18.04.06
Build Dependencies:
opencl
Link Dependencies:
opencl
Description:
Print all known information about all available OpenCL platforms and devices in the system.

clingo

Homepage:
Spack package:
Versions:
master, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python
Link Dependencies:
python
Run Dependencies:
python
Description:
Clingo: A grounder and solver for logic programs Clingo is part of the Potassco project for Answer Set Programming (ASP). ASP offers a simple and powerful modeling language to describe combinatorial problems as logic programs. The clingo system then takes such a logic program and computes answer sets representing solutions to the given problem.

clingo-bootstrap

Homepage:
Spack package:
Versions:
master, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python
Link Dependencies:
python
Run Dependencies:
python
Description:
Clingo with some options used for bootstrapping

cln

Homepage:
Spack package:
Versions:
master, 1.3.6, 1.3.5, 1.3.4, 1.3.3, 1.3.2, 1.3.1, 1.3.0, 1.2.2, 1.2.1, 1.2.0
Build Dependencies:
autoconf, automake, libtool, m4, gmp, texinfo, gettext
Link Dependencies:
gmp
Description:
CLN is a library for efficient computations with all kinds of numbers in arbitrary precision. It features number classes for unlimited length integers, rationals, arbitrary precision floating point numbers and much more.

cloc

Homepage:
Spack package:
Versions:
1.84, 1.80, 1.74
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Count, or compute differences of, physical lines of source code in the given files (may be archives such as compressed tarballs or zip files) and/or recursively below the given directories.

cloog

Homepage:
Spack package:
Versions:
0.18.1, 0.18.0, 0.17.0
Build Dependencies:
gmp, isl
Link Dependencies:
gmp, isl
Description:
CLooG is a free software and library to generate code for scanning Z-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that reaches each integral point of one or more parameterized polyhedra.

cloverleaf

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
mpi, cuda
Link Dependencies:
mpi, cuda
Description:
Proxy Application. CloverLeaf is a miniapp that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

cloverleaf3d

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CloverLeaf3D is 3D version of the CloverLeaf mini- app. CloverLeaf is a mini-app that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

clp

Homepage:
Spack package:
Versions:
1.17.6, 1.17.4, 1.16.11
Build Dependencies:
coinutils, osi
Link Dependencies:
coinutils, osi
Description:
Clp (Coin-or linear programming) is an open-source linear programming solver written in C++.

clustal-omega

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
argtable
Link Dependencies:
argtable
Description:
Clustal Omega: the last alignment program you'll ever need.

clustalw

Homepage:
Spack package:
Versions:
2.1
Description:
Multiple alignment of nucleic acid and protein sequences.

cmake

Homepage:
Spack package:
Versions:
3.20.1, 3.20.0, 3.19.8, 3.19.7, 3.19.6, 3.19.5, 3.19.4, 3.19.3, 3.19.2, 3.19.1, 3.19.0, 3.18.6, 3.18.5, 3.18.4, 3.18.3, 3.18.2, 3.18.1, 3.18.0, 3.17.5, 3.17.4, 3.17.3, 3.17.1, 3.17.0, 3.16.9, 3.16.8, 3.16.7, 3.16.6, 3.16.5, 3.16.4, 3.16.3, 3.16.2, 3.16.1, 3.16.0, 3.15.7, 3.15.6, 3.15.5, 3.15.4, 3.15.3, 3.15.2, 3.15.1, 3.15.0, 3.14.7, 3.14.6, 3.14.5, 3.14.4, 3.14.3, 3.14.2, 3.14.1, 3.14.0, 3.13.5, 3.13.4, 3.13.3, 3.13.2, 3.13.1, 3.13.0, 3.12.4, 3.12.3, 3.12.2, 3.12.1, 3.12.0, 3.11.4, 3.11.3, 3.11.2, 3.11.1, 3.11.0, 3.10.3, 3.10.2, 3.10.1, 3.10.0, 3.9.6, 3.9.4, 3.9.2, 3.9.0, 3.8.2, 3.8.1, 3.8.0, 3.7.2, 3.7.1, 3.6.1, 3.6.0, 3.5.2, 3.5.1, 3.5.0, 3.4.3, 3.4.0, 3.3.1, 3.1.0, 3.0.2, 2.8.10.2
Build Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, python, py-sphinx, openssl, ncurses
Link Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, openssl, ncurses
Description:
A cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

cmaq

Homepage:
Spack package:
Versions:
5.3.1, 5.3
Description:
Code base for the U.S. EPA's Community Multiscale Air Quality Model (CMAQ).

cmark

Homepage:
Spack package:
Versions:
0.29.0, 0.28.3, 0.28.2, 0.28.1, 0.28.0, 0.27.1
Build Dependencies:
cmake
Description:
cmark is the C reference implementation of CommonMark, a rationalized version of Markdown syntax with a spec.

cminpack

Homepage:
Spack package:
Versions:
master, 1.3.6
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
This is a C version of the minpack minimization package. Minpack includes software for solving nonlinear equations and nonlinear least squares problems.

cmocka

Homepage:
Spack package:
Versions:
1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
Unit-testing framework in pure C

cmockery

Homepage:
Spack package:
Versions:
0.1.2, 0.1.1, 0.1.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
A lightweight library to simplify and generalize the process of writing unit tests for C applications.

cmor

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2
Build Dependencies:
uuid, netcdf-c, udunits, hdf5, python, py-numpy
Link Dependencies:
uuid, netcdf-c, udunits, hdf5, python
Run Dependencies:
python, py-numpy
Description:
Climate Model Output Rewriter is used to produce CF-compliant netCDF files. The structure of the files created by the library and the metadata they contain fulfill the requirements of many of the climate community's standard model experiments.

cnmem

Homepage:
Spack package:
Versions:
git
Build Dependencies:
cmake
Description:
CNMem mempool for CUDA devices

cnpy

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
cnpy: library to read/write .npy and .npz files in C/C++.

cntk

Homepage:
Spack package:
Versions:
master, 2.0
Build Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Link Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Description:
The Microsoft Cognitive Toolkit is a unified deep-learning toolkit that describes neural networks as a series of computational steps via a directed graph.

cntk1bitsgd

Homepage:
Spack package:
Versions:
master, c8b77d
Description:
CNTK1bitSGD is the header-only 1-bit stochastic gradient descent (1bit- SGD) library for the Computational Network Toolkit (CNTK).

cnvnator

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Link Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Description:
A tool for CNV discovery and genotyping from depth-of-coverage by mapped reads.

codar-cheetah

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0, 0.5
Build Dependencies:
python
Run Dependencies:
python
Description:
CODAR Cheetah: The CODAR Experiment Harness for Exascale science applications.

code-server

Homepage:
Spack package:
Versions:
3.4.1, 3.1.1, 3.1.0
Build Dependencies:
git
Link Dependencies:
git
Description:
code-server is VS Code running on a remote server, accessible through the browser.

codec2

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
cmake
Description:
Open source speech codec designed for communications quality speech between 450 and 3200 bit/s. The main application is low bandwidth HF/VHF digital radio.

codes

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0
Build Dependencies:
autoconf, automake, libtool, m4, pkgconfig, bison, flex, mpi, ross, sst-dumpi
Link Dependencies:
mpi, ross, sst-dumpi
Description:
CO-Design of multi-layer Exascale Storage (CODES) simulation framework

coevp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
mpi, silo, flann, lapack
Link Dependencies:
mpi, silo, flann, lapack
Description:
CoEVP is a scale-bridging proxy application for embedded viscoplasticity applications. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. Due to the size and complexity of the studied models, as well as restrictions on distribution, the currently available LULESH proxy application provides the coarse-scale model implementation and the ASPA proxy application provides the adaptive sampling support.

cohmm

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
gnuplot
Link Dependencies:
gnuplot
Description:
An anticipated important use-case for next-generation supercomputing is multiscale modeling, in which continuum equations for large-scale material deformation are augmented with high-fidelity, fine-scale simulations that provide constitutive data on demand.

coin3d

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.0.0
Build Dependencies:
boost, doxygen, perl
Link Dependencies:
glu, gl, libsm, libxext, libice, uuid, libxcb, libxau
Description:
Coin is an OpenGL-based, 3D graphics library that has its roots in the Open Inventor 2.1 API, which Coin still is compatible with.

coinhsl

Homepage:
Spack package:
Versions:
2019.05.21, 2015.06.23, 2014.01.17, 2014.01.10
Build Dependencies:
blas
Link Dependencies:
blas
Description:
CoinHSL is a collection of linear algebra libraries (KB22, MA27, MA28, MA54, MA57, MA64, MA77, MA86, MA97, MC19, MC34, MC64, MC68, MC69, MC78, MC80, OF01, ZB01, ZB11) bundled for use with IPOPT and other applications that use these HSL routines. Note: CoinHSL is licensed software. You will need to request a license from Research Councils UK and download a .tar.gz archive of CoinHSL yourself. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

coinutils

Homepage:
Spack package:
Versions:
2.11.4
Description:
CoinUtils is an open-source collection of classes and helper functions that are generally useful to multiple COIN-OR projects.

collectd

Homepage:
Spack package:
Versions:
5.12.0, 5.11.0, 5.10.0
Test Dependencies:
valgrind
Description:
The system statistics collection daemon.

collier

Homepage:
Spack package:
Versions:
1.2.5, 1.2.4, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1, 1.0
Build Dependencies:
cmake
Description:
COLLIER: A Complex One-Loop LIbrary with Extended Regularizations

colm

Homepage:
Spack package:
Versions:
0.12.0
Description:
Colm Programming Language Colm is a programming language designed for the analysis and transformation of computer languages. Colm is influenced primarily by TXL. It is in the family of program transformation languages.

colordiff

Homepage:
Spack package:
Versions:
1.0.19, 1.0.18
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Colorful diff utility.

comd

Homepage:
Spack package:
Versions:
develop, 1.1
Build Dependencies:
mpi, graphviz
Link Dependencies:
mpi, graphviz
Description:
CoMD is a reference implementation of classical molecular dynamics algorithms and workloads as used in materials science. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. New versions of CoMD will be released to incorporate the lessons learned from the co-design process.

comgr

Homepage:
Spack package:
Versions:
4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, llvm-amdgpu, rocm-device-libs, rocm-cmake
Link Dependencies:
zlib, z3, ncurses
Description:
This provides various Lightning Compiler related services. It currently contains one library, the Code Object Manager (Comgr)

commons-lang

Homepage:
Spack package:
Versions:
2.6, 2.4
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-lang3

Homepage:
Spack package:
Versions:
3.7
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-logging

Homepage:
Spack package:
Versions:
1.2, 1.1.3, 1.1.1
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
When writing a library it is very useful to log information. However there are many logging implementations out there, and a library cannot impose the use of a particular one on the overall application that the library is a part of. The Logging package is an ultra-thin bridge between different logging implementations. A library that uses the commons-logging API can be used with any logging implementation at runtime. Commons-logging comes with support for a number of popular logging implementations, and writing adapters for others is a reasonably simple task.

compadre

Homepage:
Spack package:
Versions:
master, 1.3.0
Build Dependencies:
cmake, kokkos, kokkos-kernels, mpi
Link Dependencies:
kokkos, kokkos-kernels, mpi
Description:
The Compadre Toolkit provides a performance portable solution for the parallel evaluation of computationally dense kernels. The toolkit specifically targets the Generalized Moving Least Squares (GMLS) approach, which requires the inversion of small dense matrices. The result is a set of weights that provide the information needed for remap or entries that constitute the rows of some globally sparse matrix.

compiz

Homepage:
Spack package:
Versions:
0.7.8
Build Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Link Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Description:
compiz - OpenGL window and compositing manager. Compiz is an OpenGL compositing manager that use GLX_EXT_texture_from_pixmap for binding redirected top-level windows to texture objects. It has a flexible plug- in system and it is designed to run well on most graphics hardware.

compositeproto

Homepage:
Spack package:
Versions:
0.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Composite Extension. This package contains header files and documentation for the composite extension. Library and server implementations are separate.

conda4aarch64

Homepage:
Spack package:
Versions:
1.0.0
Description:
Conda for aarch64

conduit

Homepage:
Spack package:
Versions:
develop, master, 0.7.1, 0.7.0, 0.6.0, 0.5.1, 0.5.0, 0.4.0, 0.3.1, 0.3.0, 0.2.1, 0.2.0
Build Dependencies:
cmake, python, py-numpy, py-mpi4py, hdf5, silo, adios, zfp, h5z-zfp, mpi, py-sphinx, py-sphinx-rtd-theme, doxygen
Link Dependencies:
python, hdf5, silo, adios, zfp, h5z-zfp, mpi, doxygen
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. It is used for data coupling between packages in-core, serialization, and I/O tasks.

connect-proxy

Homepage:
Spack package:
Versions:
1.105
Description:
`connect.c` is a simple relaying command to make network connection via SOCKS and https proxy

conserver

Homepage:
Spack package:
Versions:
8.2.5, 8.2.4, 8.2.3, 8.2.2, 8.2.1
Description:
Conserver is an application that allows multiple users to watch a serial console at the same time.

console-bridge

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0, 0.5.1, 0.5.0, 0.4.4, 0.4.3
Build Dependencies:
cmake
Description:
console_bridge is a ROS-independent, pure CMake (i.e. non-catkin and non-rosbuild package) that provides logging calls that mirror those found in rosconsole, but for applications that are not necessarily using ROS.

constype

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
pkgconfig, util-macros
Description:
constype prints on the standard output the Sun code for the type of display that the specified device is. It was originally written for SunOS, but has been ported to other SPARC OS'es and to Solaris on both SPARC & x86.

consul

Homepage:
Spack package:
Versions:
1.8.1, 1.8.0, 1.7.6
Build Dependencies:
go
Link Dependencies:
go
Description:
Consul is a distributed, highly available, and data center aware solution to connect and configure applications across dynamic, distributed infrastructure.

converge

Homepage:
Spack package:
Versions:
2.4.10, 2.3.23, 2.2.0, 2.1.0, 2.0.0
Build Dependencies:
mpi, openmpi
Link Dependencies:
mpi, openmpi
Description:
CONVERGE is a revolutionary computational fluid dynamics (CFD) program that eliminates the grid generation bottleneck from the simulation process. CONVERGE was developed by engine simulation experts and is straightforward to use for both engine and non-engine simulations. Unlike many CFD programs, CONVERGE automatically generates a perfectly orthogonal, structured grid at runtime based on simple, user-defined grid control parameters. This grid generation method completely eliminates the need to manually generate a grid. In addition, CONVERGE offers many other features to expedite the setup process and to ensure that your simulations are as computationally efficient as possible.

corenlp

Homepage:
Spack package:
Versions:
4.0.0
Build Dependencies:
ant
Description:
Stanford CoreNLP provides a set of human language technology tools. It can give the base forms of words, their parts of speech, whether they are names of companies, people, etc., normalize dates, times, and numeric quantities, mark up the structure of sentences in terms of phrases and syntactic dependencies, indicate which noun phrases refer to the same entities, indicate sentiment, extract particular or open-class relations between entity mentions, get the quotes people said, etc.

coreutils

Homepage:
Spack package:
Versions:
8.31, 8.30, 8.29, 8.26, 8.23
Description:
The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system.

corset

Homepage:
Spack package:
Versions:
1.06
Description:
Corset is a command-line software program to go from a de novo transcriptome assembly to gene-level counts.

cosbench

Homepage:
Spack package:
Versions:
0.4.2, 0.4.1.0, 0.4.0.1
Run Dependencies:
java, curl
Description:
COSBench is a benchmarking tool to measure the performance of Cloud Object Storage services. Object storage is an emerging technology that is different from traditional file systems (e.g., NFS) or block device systems (e.g., iSCSI). Amazon S3 and Openstack* swift are well-known object storage solutions

cosma

Homepage:
Spack package:
Versions:
master, 2.3.0, 2.2.0, 2.0.7, 2.0.2
Build Dependencies:
cuda, cmake, mpi, blas, scalapack
Link Dependencies:
cuda, mpi, blas, scalapack
Description:
Distributed Communication-Optimal Matrix-Matrix Multiplication Library

cosmoflow-benchmark

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cuda, python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Link Dependencies:
cuda
Run Dependencies:
python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Description:
This is a an implementation of the CosmoFlow 3D convolutional neural network for benchmarking. It is written in TensorFlow with the Keras API and uses Horovod for distributed training.

cosmomc

Homepage:
Spack package:
Versions:
2016.11, 2016.06
Build Dependencies:
python, mpi, planck-likelihood, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Link Dependencies:
mpi, planck-likelihood
Run Dependencies:
python, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Description:
CosmoMC is a Fortran 2008 Markov-Chain Monte-Carlo (MCMC) engine for exploring cosmological parameter space, together with Fortran and python code for analysing Monte-Carlo samples and importance sampling (plus a suite of scripts for building grids of runs, plotting and presenting results).

cosp2

Homepage:
Spack package: