Package List
This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.
Spack currently has 7224 mainline packages:
3dtk¶
- Homepage:
- Spack package:
- Versions:
- trunk, 1.2
- Build Dependencies:
- cmake, gmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
- Link Dependencies:
- boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
- Description:
- The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.
3proxy¶
- Homepage:
- Spack package:
- Versions:
- 0.8.13, 0.8.12, 0.8.11
- Build Dependencies:
- autoconf, automake, libtool, m4
- Description:
- 3proxy - tiny free proxy server
abacus¶
- Homepage:
- Spack package:
- Versions:
- develop, 2.2.3, 2.2.2, 2.2.1, 2.2.0
- Build Dependencies:
- elpa, cereal, libxc, fftw, mpi, mkl
- Link Dependencies:
- elpa, cereal, libxc, fftw, mpi, mkl
- Run Dependencies:
- mpi
- Description:
- ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles
abduco¶
- Homepage:
- Spack package:
- Versions:
- 0.6, 0.5, 0.4
- Description:
- abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.
abi-compliance-checker¶
- Homepage:
- Spack package:
- Versions:
- 2.3, 2.2, 2.1
- Build Dependencies:
- abi-dumper, perl, binutils, universal-ctags
- Link Dependencies:
- abi-dumper, perl, binutils, universal-ctags
- Description:
- A tool for checking backward compatibility of a C/C++ library API.
abi-dumper¶
- Homepage:
- Spack package:
- Versions:
- 1.2, 1.1, 1.0, 0.99.19
- Build Dependencies:
- perl, elfutils, binutils, universal-ctags, vtable-dumper
- Link Dependencies:
- perl, elfutils, binutils, universal-ctags, vtable-dumper
- Description:
- ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.
abinit¶
- Homepage:
- Spack package:
- Versions:
- 9.8.3, 9.6.1, 9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
- Build Dependencies:
- gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
- Link Dependencies:
- atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
- Description:
- ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.
abseil-cpp¶
- Homepage:
- Spack package:
- Versions:
- 20230125.2, 20220623.0, 20211102.0, 20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
- Build Dependencies:
- cmake, gmake, ninja
- Description:
- Abseil Common Libraries (C++)
abyss¶
- Homepage:
- Spack package:
- Versions:
- 2.3.5, 2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
- Build Dependencies:
- gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
- Link Dependencies:
- mpi, boost, sparsehash, sqlite, libtool
- Run Dependencies:
- bwa
- Description:
- ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.
accfft¶
- Homepage:
- Spack package:
- Versions:
- develop
- Build Dependencies:
- cuda, cmake, gmake, ninja, fftw, parallel-netcdf
- Link Dependencies:
- cuda, fftw, parallel-netcdf
- Description:
- AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters
acct¶
- Homepage:
- Spack package:
- Versions:
- 6.6.4, 6.6.3, 6.6.2
- Build Dependencies:
- gnuconfig
- Description:
- Utilities for monitoring process activities.
accumulo¶
- Homepage:
- Spack package:
- Versions:
- 2.0.1, 2.0.0, 1.9.3, 1.9.2
- Build Dependencies:
- java, maven
- Run Dependencies:
- java
- Description:
- Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.
ace¶
- Homepage:
- Spack package:
- Versions:
- 7.1.0, 6.5.12, 6.5.6, 6.5.1, 6.5.0
- Description:
- ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.
acfl¶
- Homepage:
- Spack package:
- Versions:
- 23.04.1, 23.04, 22.1, 22.0.2, 22.0.1
- Description:
- Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.
ack¶
- Homepage:
- Spack package:
- Versions:
- 2.22, 2.18, 2.16, 2.14
- Build Dependencies:
- perl
- Link Dependencies:
- perl
- Description:
- ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.
acl¶
- Homepage:
- Spack package:
- Versions:
- 2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
- Build Dependencies:
- gnuconfig, m4, autoconf, automake, libtool, attr, gettext
- Link Dependencies:
- attr, gettext
- Description:
- Commands for Manipulating POSIX Access Control Lists.
acpica-tools¶
- Homepage:
- Spack package:
- Versions:
- 20200528, 20200430
- Build Dependencies:
- flex, bison
- Description:
- Debian packaging for the ACPICA user space tools
acpid¶
- Homepage:
- Spack package:
- Versions:
- 2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4
- Description:
- ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.
activeharmony¶
- Homepage:
- Spack package:
- Versions:
- 4.6.0, 4.5
- Description:
- Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).
activemq¶
- Homepage:
- Spack package:
- Versions:
- 5.17.3, 5.14.0
- Build Dependencies:
- java
- Link Dependencies:
- java
- Description:
- Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.
acts¶
- Homepage:
- Spack package:
- Versions:
- main, master, 23.2.1, 23.2.0, 23.1.0, 23.0.0, 22.0.1, 22.0.0, 21.1.1, 21.1.0, 21.0.0, 20.3.0, 20.2.0, 20.1.0, 20.0.0, 19.11.0, 19.10.0, 19.9.0, 19.8.0, 19.7.0, 19.6.0, 19.5.0, 19.4.0, 19.3.0, 19.2.0, 19.1.0, 19.0.0, 18.0.0, 17.1.0, 17.0.0, 16.0.0, 15.1.0, 15.0.1, 15.0.0, 14.1.0, 14.0.0, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
- Build Dependencies:
- cuda, cmake, gmake, ninja, acts-dd4hep, actsvg, autodiff, boost, dd4hep, edm4hep, eigen, geant4, git-lfs, gperftools, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnxruntime, py-pybind11, py-pytest, root, sycl, vecmem
- Link Dependencies:
- cuda, acts-dd4hep, actsvg, autodiff, boost, dd4hep, edm4hep, eigen, geant4, git-lfs, gperftools, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnxruntime, py-pybind11, py-pytest, root, sycl, vecmem
- Description:
- A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.
acts-dd4hep¶
- Homepage:
- Spack package:
- Versions:
- 1.0.1, 1.0.0
- Build Dependencies:
- cmake, gmake, ninja, dd4hep
- Link Dependencies:
- dd4hep
- Description:
- Glue library to connect Acts to DD4hep
actsvg¶
- Homepage:
- Spack package:
- Versions:
- 0.4.33, 0.4.30, 0.4.29, 0.4.28, 0.4.27, 0.4.26
- Build Dependencies:
- cmake, gmake, ninja, boost, googletest
- Link Dependencies:
- boost, googletest
- Test Dependencies:
- boost
- Description:
- An SVG based C++17 plotting library for ACTS detectors and surfaces.
addrwatch¶
- Homepage:
- Spack package:
- Versions:
- 1.0.2, 1.0.1
- Build Dependencies:
- gnuconfig, libevent, libpcap
- Link Dependencies:
- libevent, libpcap
- Description:
- A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.
adept-utils¶
- Homepage:
- Spack package:
- Versions:
- 1.0.1, 1.0
- Build Dependencies:
- cmake, gmake, ninja, boost, mpi
- Link Dependencies:
- boost, mpi
- Description:
- Utility libraries for LLNL performance tools.
adf¶
- Homepage:
- Spack package:
- Versions:
- 2017.113
- Description:
- Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.
adiak¶
- Homepage:
- Spack package:
- Versions:
- 0.3.0-alpha, 0.2.2, 0.2.1, 0.1.1
- Build Dependencies:
- cmake, gmake, ninja, mpi
- Link Dependencies:
- mpi
- Description:
- Adiak collects metadata about HPC application runs and provides it to tools.
adios¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
- Build Dependencies:
- gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
- Link Dependencies:
- mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
- Description:
- The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.
adios2¶
- Homepage:
- Spack package:
- Versions:
- master, 2.9.0, 2.8.3, 2.8.2, 2.8.1, 2.8.0, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
- Build Dependencies:
- cuda, cmake, gmake, ninja, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, libpressio, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
- Link Dependencies:
- cuda, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, libpressio, c-blosc, bzip2, libpng, zfp, sz
- Run Dependencies:
- python, py-numpy, py-mpi4py
- Test Dependencies:
- python
- Description:
- The Adaptable Input Output System version 2, developed in the Exascale Computing Program
adlbx¶
- Homepage:
- Spack package:
- Versions:
- master, 1.0.0, 0.9.2, 0.9.1
- Build Dependencies:
- gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
- Link Dependencies:
- exmcutils, mpi
- Description:
- ADLB/X: Master-worker library + work stealing and data dependencies
admixtools¶
- Homepage:
- Spack package:
- Versions:
- 7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
- Build Dependencies:
- lapack, gsl
- Link Dependencies:
- lapack, gsl
- Description:
- The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..
adms¶
- Homepage:
- Spack package:
- Versions:
- master, 2.3.7
- Build Dependencies:
- gnuconfig, bison, flex, perl-xml-libxml
- Description:
- ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.
adol-c¶
- Homepage:
- Spack package:
- Versions:
- master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
- Build Dependencies:
- gnuconfig, automake, autoconf, libtool, m4, boost
- Link Dependencies:
- boost
- Description:
- A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.
advancecomp¶
- Homepage:
- Spack package:
- Versions:
- 2.5, 2.1, 2.0, 1.23, 1.22
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4
- Link Dependencies:
- zlib
- Description:
- AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.
adwaita-icon-theme¶
- Homepage:
- Spack package:
- Versions:
- 3.38.0
- Build Dependencies:
- gnuconfig, gdk-pixbuf, librsvg
- Description:
- Mostly private use system icons.
aegean¶
- Homepage:
- Spack package:
- Versions:
- 0.15.2
- Build Dependencies:
- genometools
- Link Dependencies:
- genometools
- Description:
- The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.
aeskeyfind¶
- Homepage:
- Spack package:
- Versions:
- master
- Description:
- This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.
aespipe¶
- Homepage:
- Spack package:
- Versions:
- 2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
- Build Dependencies:
- gnuconfig
- Description:
- aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.
agile¶
- Homepage:
- Spack package:
- Versions:
- 1.5.1
- Build Dependencies:
- gnuconfig, hepmc, boost
- Link Dependencies:
- hepmc, boost
- Description:
- AGILe is A Generator Interface Library (& executable), i.e. a uniform object oriented C++ interface for a variety of Fortran-based Monte Carlo event generators..
agrep¶
- Homepage:
- Spack package:
- Versions:
- 3.41
- Description:
- AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.
akantu¶
- Homepage:
- Spack package:
- Versions:
- master, 3.0.0
- Build Dependencies:
- cmake, gmake, ninja, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
- Link Dependencies:
- boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
- Run Dependencies:
- python, py-numpy, py-scipy, py-pybind11
- Description:
- Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.
albany¶
- Homepage:
- Spack package:
- Versions:
- develop
- Build Dependencies:
- cmake, gmake, ninja, mpi, trilinos
- Link Dependencies:
- mpi, trilinos
- Description:
- Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.
albert¶
- Homepage:
- Spack package:
- Versions:
- 4.0a_opt4, 4.0a
- Build Dependencies:
- readline
- Link Dependencies:
- readline
- Description:
- Albert is an interactive program to assist the specialist in the study of nonassociative algebra.
alembic¶
- Homepage:
- Spack package:
- Versions:
- 1.8.5, 1.7.16
- Build Dependencies:
- cmake, gmake, ninja, openexr, hdf5, boost, zlib, py-ilmbase
- Link Dependencies:
- openexr, hdf5, boost, zlib, py-ilmbase
- Description:
- Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.
alglib¶
- Homepage:
- Spack package:
- Versions:
- 3.20.0, 3.11.0
- Description:
- ALGLIB is a cross-platform numerical analysis and data processing library.
allpaths-lg¶
- Homepage:
- Spack package:
- Versions:
- 52488
- Build Dependencies:
- gnuconfig
- Description:
- ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.
alluxio¶
- Homepage:
- Spack package:
- Versions:
- 2.9.3, 2.9.1, 2.7.2, 2.2.1, 2.2.0
- Run Dependencies:
- java
- Description:
- Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.
alpaka¶
- Homepage:
- Spack package:
- Versions:
- develop, 0.8.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0
- Build Dependencies:
- cuda, cmake, gmake, ninja, boost
- Link Dependencies:
- cuda, cmake, boost
- Description:
- Abstraction Library for Parallel Kernel Acceleration.
alpgen¶
- Homepage:
- Spack package:
- Versions:
- 2.1.4
- Build Dependencies:
- cmake, gmake, ninja
- Description:
- A collection of codes for the generation of multi-parton processes in hadronic collisions.
alquimia¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.0.10, 1.0.9, xsdk-0.6.0, xsdk-0.5.0
- Build Dependencies:
- cmake, gmake, ninja, mpi, hdf5, pflotran, petsc
- Link Dependencies:
- mpi, hdf5, pflotran, petsc
- Description:
- Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN
alsa-lib¶
- Homepage:
- Spack package:
- Versions:
- 1.2.3.2, 1.2.2, 1.1.4.1
- Build Dependencies:
- gnuconfig
- Link Dependencies:
- python
- Run Dependencies:
- python
- Description:
- The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.
aluminum¶
- Homepage:
- Spack package:
- Versions:
- master, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0, 1.0.0-lbann, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
- Build Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, gmake, ninja, mpi, nccl, hwloc, cub, hipcub, rccl, aws-ofi-rccl, aws-ofi-nccl
- Link Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub, rccl, aws-ofi-rccl, aws-ofi-nccl
- Description:
- Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.
amber¶
- Homepage:
- Spack package:
- Versions:
- 20, 18, 16
- Build Dependencies:
- cuda, zlib, bzip2, flex, bison, netcdf-fortran, parallel-netcdf, tcsh, mpi
- Link Dependencies:
- cuda, zlib, bzip2, netcdf-fortran, parallel-netcdf, mpi
- Description:
- Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.
amd-aocl¶
- Homepage:
- Spack package:
- Versions:
- 4.0, 3.2, 3.1, 3.0, 2.2
- Build Dependencies:
- amdblis, amdfftw, amdlibflame, amdlibm, amdscalapack, aocl-sparse
- Link Dependencies:
- amdblis, amdfftw, amdlibflame, amdlibm, amdscalapack, aocl-sparse
- Description:
- AMD Optimizing CPU Libraries (AOCL) - AOCL is a set of numerical libraries tuned specifically for AMD EPYC processor family. They have a simple interface to take advantage of the latest hardware innovations. The tuned implementations of industry standard math libraries enable fast development of scientific and high performance computing projects LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/aocl-eula.html https://www.amd.com/en/developer/aocl/aocl-4-0-eula.html
amdblis¶
- Homepage:
- Spack package:
- Versions:
- 4.0, 3.2, 3.1, 3.0.1, 3.0, 2.2
- Build Dependencies:
- python
- Run Dependencies:
- python
- Description:
- AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-BLIS license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/blis/blis-4-0-eula.html https://www.amd.com/en/developer/aocl/blis/blis-eula.html
amdfftw¶
- Homepage:
- Spack package:
- Versions:
- 4.0, 3.2, 3.1, 3.0.1, 3.0, 2.2
- Build Dependencies:
- gnuconfig, mpi, llvm-openmp, texinfo
- Link Dependencies:
- mpi, llvm-openmp, texinfo
- Description:
- FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-FFTW license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/fftw/fftw-libraries-4-0-eula.html https://www.amd.com/en/developer/aocl/fftw/fftw-libraries-eula.html
amdlibflame¶
- Homepage:
- Spack package:
- Versions:
- 4.0, 3.2, 3.1, 3.0.1, 3.0, 2.2
- Build Dependencies:
- gnuconfig, blas, python, gmake
- Link Dependencies:
- blas
- Description:
- libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-libFLAME license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/blis/libflame-4-0-eula.html https://www.amd.com/en/developer/aocl/blis/libflame-eula.html
amdlibm¶
- Homepage:
- Spack package:
- Versions:
- 4.0, 3.2, 3.1, 3.0, 2.2
- Build Dependencies:
- scons, python
- Link Dependencies:
- mpfr
- Run Dependencies:
- python
- Description:
- AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-FFTW license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/libm/libm-4-0-eula.html https://www.amd.com/en/developer/aocl/libm/libm-eula.html
amdscalapack¶
- Homepage:
- Spack package:
- Versions:
- 4.0, 3.2, 3.1, 3.0, 2.2
- Build Dependencies:
- cmake, gmake, ninja, mpi, lapack, blas
- Link Dependencies:
- mpi, lapack, blas
- Description:
- ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-ScaLAPACK license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/scalapack/scalapack- libraries-4-0-eula.html https://www.amd.com/en/developer/aocl/scalapack/scalapack-libraries- eula.html
amg¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.2, 1.1, 1.0
- Build Dependencies:
- mpi
- Link Dependencies:
- mpi
- Description:
- AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.
amg2013¶
- Homepage:
- Spack package:
- Versions:
- master
- Build Dependencies:
- mpi
- Link Dependencies:
- mpi
- Description:
- AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.
amgx¶
- Homepage:
- Spack package:
- Versions:
- 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
- Build Dependencies:
- cuda, cmake, gmake, ninja, mpi, mkl, magma
- Link Dependencies:
- cuda, mpi, mkl, magma
- Description:
- AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.
aml¶
- Homepage:
- Spack package:
- Versions:
- master, 0.2.1, 0.2.0, 0.1.0
- Build Dependencies:
- gnuconfig, numactl, cuda, hip, oneapi-level-zero, hwloc, ocl-icd, pkgconf, m4, autoconf, automake, libtool, git
- Link Dependencies:
- numactl, cuda, hip, oneapi-level-zero, hwloc, ocl-icd
- Description:
- AML is a memory management library designed to ease the use of complex memory topologies and complex data layout optimizations for high- performance computing applications.
amp¶
- Homepage:
- Spack package:
- Versions:
- develop
- Build Dependencies:
- cmake, gmake, ninja, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
- Link Dependencies:
- blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
- Description:
- The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.
ampl¶
- Homepage:
- Spack package:
- Versions:
- 20220525, 20210226, 20190529
- Description:
- AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.
ampliconnoise¶
- Homepage:
- Spack package:
- Versions:
- 1.29
- Build Dependencies:
- mpi, gsl
- Link Dependencies:
- mpi, gsl
- Description:
- AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.
ampt¶
- Homepage:
- Spack package:
- Versions:
- 2.26-t9b_atlas, 2.26-t9
- Description:
- A Multi-Phase Transport (AMPT) model is a Monte Carlo transport model for nuclear collisions at relativistic energies.
amqp-cpp¶
- Homepage:
- Spack package:
- Versions:
- 4.3.24, 4.3.19
- Build Dependencies:
- cmake, gmake, ninja, openssl
- Link Dependencies:
- openssl
- Run Dependencies:
- openssl
- Description:
- AMQP-CPP is a C++ library for communicating with a RabbitMQ message broker. The library can be used to parse incoming data from, and generate frames to, a RabbitMQ server.
amr-wind¶
- Homepage:
- Spack package:
- Versions:
- main
- Build Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, gmake, ninja, hypre, masa, ascent, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
- Link Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, hypre, masa, ascent, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
- Description:
- AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.
amrex¶
- Homepage:
- Spack package:
- Versions:
- develop, 23.06, 23.05, 23.04, 23.03, 23.02, 23.01, 22.12, 22.11, 22.10, 22.09, 22.08, 22.07, 22.06, 22.05, 22.04, 22.03, 22.02, 22.01, 21.12, 21.11, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
- Build Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, gmake, ninja, mpi, sundials, python, hdf5, rocrand, rocprim, intel-oneapi-compilers, intel-oneapi-mkl
- Link Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc, intel-oneapi-mkl
- Description:
- AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.
amrfinder¶
- Homepage:
- Spack package:
- Versions:
- 3.11.8, 3.10.42, 3.10.30, 3.10.24
- Build Dependencies:
- blast-plus, hmmer, curl
- Link Dependencies:
- blast-plus, hmmer, curl
- Description:
- NCBI AMRFinderPlus: This software and the accompanying database identify acquired antimicrobial resistance genes in bacterial protein and/or assembled nucleotide sequences as well as known resistance-associated point mutations for several taxa. With AMRFinderPlus we added select members of additional classes of genes such as virulence factors, biocide, heat, acid, and metal resistance genes.
amrvis¶
- Homepage:
- Spack package:
- Versions:
- main
- Build Dependencies:
- gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
- Link Dependencies:
- mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
- Description:
- Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.
anaconda2¶
- Homepage:
- Spack package:
- Versions:
- 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
- Description:
- Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.
anaconda3¶
- Homepage:
- Spack package:
- Versions:
- 2022.10, 2022.05, 2021.11, 2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
- Description:
- Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.
andi¶
- Homepage:
- Spack package:
- Versions:
- 0.14, 0.10
- Build Dependencies:
- gnuconfig, pkgconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
- Link Dependencies:
- gsl, libdivsufsort
- Description:
- andi is used for for estimating the evolutionary distance between closely related genomes.
angsd¶
- Homepage:
- Spack package:
- Versions:
- 0.935, 0.933, 0.921, 0.919
- Build Dependencies:
- htslib, zlib, lzma, curl
- Link Dependencies:
- htslib, zlib, lzma, curl
- Run Dependencies:
- r
- Description:
- Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.
anicalculator¶
- Homepage:
- Spack package:
- Versions:
- 1
- Run Dependencies:
- perl
- Description:
- This tool will calculate the bidirectional average nucleotide identity (gANI) and Alignment Fraction (AF) between two genomes. Note: A manual download is required for ANIcalculator. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html
ant¶
- Homepage:
- Spack package:
- Versions:
- 1.10.13, 1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
- Build Dependencies:
- java
- Link Dependencies:
- java
- Description:
- Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other
antimony¶
- Homepage:
- Spack package:
- Versions:
- 2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
- Build Dependencies:
- cmake, gmake, ninja, sbml, swig, qt, python
- Link Dependencies:
- sbml, swig, qt, python
- Description:
- Human readable language for modifying sbml
antlr¶
- Homepage:
- Spack package:
- Versions:
- 2.7.7
- Build Dependencies:
- gnuconfig, python, java
- Run Dependencies:
- python, java
- Description:
- ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.
ants¶
- Homepage:
- Spack package:
- Versions:
- 20220205, 2.4.3, 2.4.0, 2.3.5, 2.2.0
- Build Dependencies:
- cmake, gmake, ninja
- Link Dependencies:
- zlib
- Description:
- ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.
any2fasta¶
- Homepage:
- Spack package:
- Versions:
- 0.4.2, 0.2.3, 0.1.2
- Build Dependencies:
- perl
- Run Dependencies:
- perl
- Description:
- any2fasta: Convert various sequence formats to FASTA
aocc¶
- Homepage:
- Spack package:
- Versions:
- 4.0.0, 3.2.0
- Build Dependencies:
- libxml2, zlib, ncurses, libtool, texinfo
- Link Dependencies:
- libxml2, zlib, ncurses, libtool, texinfo
- Description:
- The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Installation requires acceptance of the EULA by setting the +license-agreed variant. https://www.amd.com/en/developer/aocc/aocc- compiler/eula.html Example for installation: 'spack install aocc +license-agreed'
aocl-sparse¶
- Homepage:
- Spack package:
- Versions:
- 4.0, 3.2, 3.1, 3.0, 2.2
- Build Dependencies:
- cmake, gmake, ninja, boost
- Link Dependencies:
- boost
- Description:
- AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-Sparse license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/sparse/sparse- libraries-4-0-eula.html https://www.amd.com/en/developer/aocl/sparse/sparse-libraries-eula.html
aoflagger¶
- Homepage:
- Spack package:
- Versions:
- 2.10.0
- Build Dependencies:
- cmake, gmake, ninja, casacore, fftw, boost, libxml2, lapack, cfitsio
- Link Dependencies:
- casacore, fftw, boost, libxml2, lapack, cfitsio
- Description:
- RFI detector and quality analysis for astronomical radio observations.
aom¶
- Homepage:
- Spack package:
- Versions:
- v1.0.0-errata1
- Build Dependencies:
- cmake, gmake, ninja, yasm
- Link Dependencies:
- yasm
- Description:
- Alliance for Open Media AOM AV1 Codec Library
aomp¶
- Homepage:
- Spack package:
- Versions:
- 3.10.0, 3.9.0
- Build Dependencies:
- cmake, python, py-setuptools, gl, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
- Link Dependencies:
- gl, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
- Run Dependencies:
- py-wheel
- Description:
- llvm openmp compiler from AMD.
apachetop¶
- Homepage:
- Spack package:
- Versions:
- 0.23.2, 0.19.7, 0.18.4, 0.17.4, 0.15.6
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4, readline
- Link Dependencies:
- readline
- Description:
- ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)
apcomp¶
- Homepage:
- Spack package:
- Versions:
- master, 0.0.4, 0.0.3, 0.0.2, 0.0.1
- Build Dependencies:
- cmake, mpi, llvm-openmp
- Link Dependencies:
- mpi, llvm-openmp
- Description:
- A multi use-case image compositor
ape¶
- Homepage:
- Spack package:
- Versions:
- 2.2.1
- Build Dependencies:
- gsl, libxc
- Link Dependencies:
- gsl, libxc
- Description:
- A tool for generating atomic pseudopotentials within a Density- Functional Theory framework
aperture-photometry¶
- Homepage:
- Spack package:
- Versions:
- 3.0.2, 2.8.4, 2.8.2
- Build Dependencies:
- java
- Link Dependencies:
- java
- Description:
- Aperture Photometry Tool APT is software for astronomical research
apex¶
- Homepage:
- Spack package:
- Versions:
- develop, master, 2.6.2, 2.6.1, 2.6.0, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
- Build Dependencies:
- cmake, gmake, ninja, zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, sycl, roctracer-dev, rocm-smi-lib, boost
- Link Dependencies:
- zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, sycl, roctracer-dev, rocm-smi-lib, boost
- Description:
- Autonomic Performance Environment for eXascale (APEX).
apfel¶
- Homepage:
- Spack package:
- Versions:
- 3.0.6, 3.0.4
- Build Dependencies:
- gnuconfig, swig, python, lhapdf
- Link Dependencies:
- swig
- Run Dependencies:
- python, lhapdf
- Description:
- APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.
apktool¶
- Homepage:
- Spack package:
- Versions:
- 2.7.0, 2.6.1, 2.6.0
- Build Dependencies:
- java
- Run Dependencies:
- java
- Description:
- A tool for reverse engineering 3rd party, closed, binary Android apps.
apple-gl¶
- Homepage:
- Spack package:
- Versions:
- 4.1.0
- Description:
- Shim package for the core OpenGL library from Apple
apple-glu¶
- Homepage:
- Spack package:
- Versions:
- 1.3.0
- Description:
- Shim package for Apple implementation of OpenGL Utility Libray (GLU)
apple-libunwind¶
- Homepage:
- Spack package:
- Description:
- Placeholder package for Apple's analogue to non-GNU libunwind
apple-libuuid¶
- Homepage:
- Spack package:
- Versions:
- 1353.100.2
- Description:
- Placeholder package for Apple's analogue to non-GNU libuuid
applewmproto¶
- Homepage:
- Spack package:
- Versions:
- 1.4.2
- Build Dependencies:
- gnuconfig, pkgconfig, util-macros
- Description:
- Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.
appres¶
- Homepage:
- Spack package:
- Versions:
- 1.0.6, 1.0.4
- Build Dependencies:
- gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
- Link Dependencies:
- libx11, libxt, xproto
- Description:
- The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.
apptainer¶
- Homepage:
- Spack package:
- Versions:
- main, 1.1.7, 1.1.6, 1.1.5, 1.1.4, 1.1.3, 1.0.2
- Build Dependencies:
- pkgconfig, conmon, squashfs, go, uuid, libgpg-error, libseccomp, git, cryptsetup
- Link Dependencies:
- go, uuid, libgpg-error, libseccomp, git
- Run Dependencies:
- conmon, squashfs, shadow, cryptsetup
- Description:
- Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. Needs post-install chmod/chown steps to enable full functionality. See package definition or `spack-build- out.txt` build log for details, e.g.: tail -15 $(spack location -i apptainer)/.spack/spack-build-out.txt
apr¶
- Homepage:
- Spack package:
- Versions:
- 1.7.4, 1.7.3, 1.7.2, 1.7.0, 1.6.2, 1.5.2
- Build Dependencies:
- gnuconfig
- Link Dependencies:
- uuid
- Description:
- Apache portable runtime.
apr-util¶
- Homepage:
- Spack package:
- Versions:
- 1.6.3, 1.6.1, 1.6.0, 1.5.4
- Build Dependencies:
- gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
- Link Dependencies:
- apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
- Description:
- Apache Portable Runtime Utility
aragorn¶
- Homepage:
- Spack package:
- Versions:
- 1.2.41, 1.2.38, 1.2.36
- Description:
- ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.
arbor¶
- Homepage:
- Spack package:
- Versions:
- master, 0.8.1, 0.8, 0.7, 0.6, 0.5.2
- Build Dependencies:
- cuda, cmake, gmake, ninja, fmt, pugixml, nlohmann-json, random123, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
- Link Dependencies:
- cuda, fmt, pugixml, nlohmann-json, random123, mpi
- Run Dependencies:
- py-mpi4py, python, py-numpy
- Description:
- Arbor is a high-performance library for computational neuroscience simulations.
arborx¶
- Homepage:
- Spack package:
- Versions:
- master, 1.4, 1.3, 1.2, 1.1, 1.0, 0.9-beta
- Build Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, gmake, ninja, mpi, rocthrust, kokkos, trilinos
- Link Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, rocthrust, kokkos, trilinos
- Description:
- ArborX is a performance-portable library for geometric search
arc¶
- Homepage:
- Spack package:
- Versions:
- master, 2021-12-01
- Build Dependencies:
- cmake, gmake, ninja, libpressio
- Link Dependencies:
- libpressio
- Description:
- ARC is an automatic resiliency library designed to provide security to lossy compressed data or other uint8_t data arrays forked from: https://github.com/FTHPC/ARC to support Spack after developer left grad school
archer¶
- Homepage:
- Spack package:
- Versions:
- 2.0.0, 1.0.0
- Build Dependencies:
- cmake, gmake, ninja, llvm, llvm-openmp-ompt
- Link Dependencies:
- llvm, llvm-openmp-ompt
- Description:
- ARCHER, a data race detection tool for large OpenMP applications.
argobots¶
- Homepage:
- Spack package:
- Versions:
- main, 1.1, 1.0.1, 1.0
- Build Dependencies:
- gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
- Link Dependencies:
- valgrind, libunwind
- Description:
- Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.
argon2¶
- Homepage:
- Spack package:
- Versions:
- 20190702, 20171227, 20161029
- Description:
- Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.
argp-standalone¶
- Homepage:
- Spack package:
- Versions:
- 1.3
- Build Dependencies:
- gnuconfig
- Description:
- Standalone version of the argp interface from glibc for parsing unix- style arguments.
args¶
- Homepage:
- Spack package:
- Versions:
- 6.4.6, 6.2.3, 6.2.2, 6.2.1
- Build Dependencies:
- cmake, gmake, ninja
- Description:
- A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).
argtable¶
- Homepage:
- Spack package:
- Versions:
- 2-13
- Build Dependencies:
- gnuconfig
- Description:
- Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.
aria2¶
- Homepage:
- Spack package:
- Versions:
- 1.36.0, 1.35.0, 1.34.0
- Build Dependencies:
- gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
- Link Dependencies:
- libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
- Description:
- An ultra fast download utility
arm-forge¶
- Homepage:
- Spack package:
- Versions:
- 22.1.3, 22.1.2, 22.1.1, 22.1, 22.0.4, 22.0.3, 22.0.2, 22.0.1, 22.0, 21.1.3, 21.1.2, 21.1.1, 21.1, 21.0.3, 21.0.2, 21.0.1, 21.0
- Build Dependencies:
- python
- Description:
- Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.
armadillo¶
- Homepage:
- Spack package:
- Versions:
- 12.2.0, 12.0.1, 10.5.0, 9.800.3, 8.100.1, 7.950.1
- Build Dependencies:
- cmake, gmake, ninja, arpack-ng, blas, lapack, superlu, hdf5
- Link Dependencies:
- arpack-ng, blas, lapack, superlu, hdf5
- Description:
- Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.
armcomputelibrary¶
- Homepage:
- Spack package:
- Versions:
- 23.02, 22.11, 22.08, 22.05, 22.02
- Build Dependencies:
- scons
- Link Dependencies:
- scons
- Description:
- The Arm Compute Library is a collection of low-level machine learning functions optimized for Arm® Cortex®-A, Arm® Neoverse® and Arm® Mali™ GPUs architectures. The library provides superior performance to other open source alternatives and immediate support for new Arm® technologies e.g. SVE2.
armpl-gcc¶
- Homepage:
- Spack package:
- Versions:
- 23.04.1_gcc-12.2, 23.04.1_gcc-11.3, 23.04_gcc-12.2, 23.04_gcc-11.3, 22.1_gcc-11.2, 22.1_gcc-10.2, 22.1_gcc-9.3, 22.0.2_gcc-11.2, 22.0.2_gcc-10.2, 22.0.2_gcc-9.3, 22.0.1_gcc-11.2, 22.0.1_gcc-10.2, 22.0.1_gcc-9.3
- Description:
- Arm Performance Libraries provides optimized standard core math libraries for high-performance computing applications on Arm processors.
arpack-ng¶
- Homepage:
- Spack package:
- Versions:
- develop, 3.9.0, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
- Build Dependencies:
- gnuconfig, cmake, gmake, ninja, blas, lapack, mpi, automake, autoconf, libtool, pkgconfig
- Link Dependencies:
- blas, lapack, mpi
- Description:
- ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.
arrayfire¶
- Homepage:
- Spack package:
- Versions:
- master, 3.8.1, 3.7.3, 3.7.2, 3.7.0
- Build Dependencies:
- cuda, cmake, gmake, ninja, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
- Link Dependencies:
- cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
- Description:
- ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.
arrow¶
- Homepage:
- Spack package:
- Versions:
- 10.0.1, 9.0.0, 8.0.0, 7.0.0, 4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
- Build Dependencies:
- cuda, cmake, gmake, ninja, boost, flatbuffers, llvm, lz4, openssl, orc, protobuf, py-numpy, python, rapidjson, re2, snappy, thrift, utf8proc, xsimd, zlib, zstd
- Link Dependencies:
- cuda, boost, flatbuffers, lz4, openssl, orc, protobuf, py-numpy, python, rapidjson, re2, snappy, thrift, utf8proc, xsimd, zlib, zstd
- Description:
- A cross-language development platform for in-memory data. This package contains the C++ bindings.
asagi¶
- Homepage:
- Spack package:
- Versions:
- 1.0.1, 1.0
- Build Dependencies:
- cmake, gmake, ninja, mpi, netcdf-c, numactl
- Link Dependencies:
- mpi, netcdf-c, numactl
- Description:
- a pArallel Server for Adaptive GeoInformation.
ascent¶
- Homepage:
- Spack package:
- Versions:
- develop, 0.9.1, 0.9.0, 0.8.0, 0.7.1, 0.7.0, 0.6.0
- Build Dependencies:
- cuda, cmake, gmake, ninja, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, raja, umpire, babelflow, parallelmergetree, vtk-m, kokkos, vtk-h, mfem, fides, dray, adios2, caliper, py-sphinx, py-sphinx-rtd-theme
- Link Dependencies:
- cuda, conduit, python, mpi, py-mpi4py, raja, umpire, babelflow, parallelmergetree, vtk-m, kokkos, vtk-h, mfem, fides, dray, adios2, caliper
- Run Dependencies:
- python, py-numpy, py-pip
- Description:
- Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.
asciidoc¶
- Homepage:
- Spack package:
- Versions:
- master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10
- Build Dependencies:
- gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python, autoconf, automake, libtool
- Run Dependencies:
- libxml2, libxslt, docbook-xml, docbook-xsl, python
- Description:
- A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.
asciidoc-py3¶
- Homepage:
- Spack package:
- Versions:
- 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
- Build Dependencies:
- gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
- Run Dependencies:
- python, libxml2, libxslt, docbook-xml, docbook-xsl
- Description:
- Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.
asdcplib¶
- Homepage:
- Spack package:
- Versions:
- 2_10_38, 2_10_35, 2_10_34, 2_10_33, 2_10_32
- Build Dependencies:
- gnuconfig, m4, autoconf, automake, libtool, openssl
- Link Dependencies:
- openssl
- Description:
- AS-DCP and AS-02 File Access Library.
asdf-cxx¶
- Homepage:
- Spack package:
- Versions:
- 7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
- Build Dependencies:
- cmake, gmake, ninja, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
- Link Dependencies:
- bzip2, openssl, yaml-cpp, zlib
- Run Dependencies:
- py-numpy, python
- Description:
- ASDF - Advanced Scientific Data Format, a C++ implementation
asio¶
- Homepage:
- Spack package:
- Versions:
- 1.28.0, 1.26.0, 1.24.0, 1.22.2, 1.22.1, 1.22.0, 1.21.0, 1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2, 1.18.1, 1.18.0, 1.17.0, 1.16.1, 1.16.0
- Build Dependencies:
- gnuconfig, autoconf, automake, m4, libtool, pkgconfig, boost
- Link Dependencies:
- boost
- Description:
- C++ library for network and low-level I/O programming.
aspa¶
- Homepage:
- Spack package:
- Versions:
- master
- Build Dependencies:
- lapack, blas, mpi, hdf5
- Link Dependencies:
- lapack, blas, mpi, hdf5
- Description:
- A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.
aspcud¶
- Homepage:
- Spack package:
- Versions:
- 1.9.6, 1.9.5, 1.9.4
- Build Dependencies:
- cmake, gmake, ninja, boost, re2c, clingo
- Link Dependencies:
- clingo
- Description:
- Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.
aspect¶
- Homepage:
- Spack package:
- Versions:
- develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
- Build Dependencies:
- cmake, gmake, ninja, dealii, dealii-parameter-gui, libdap4
- Link Dependencies:
- dealii, dealii-parameter-gui, libdap4
- Description:
- Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.
aspell¶
- Homepage:
- Spack package:
- Versions:
- 0.60.8, 0.60.6.1
- Build Dependencies:
- gnuconfig
- Description:
- GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.
aspell6-de¶
- Homepage:
- Spack package:
- Versions:
- 6-de-20030222-1
- Build Dependencies:
- gnuconfig, aspell
- Run Dependencies:
- aspell
- Description:
- German (de) dictionary for aspell.
aspell6-en¶
- Homepage:
- Spack package:
- Versions:
- 2017.01.22-0
- Build Dependencies:
- gnuconfig, aspell
- Run Dependencies:
- aspell
- Description:
- English (en) dictionary for aspell.
aspell6-es¶
- Homepage:
- Spack package:
- Versions:
- 1.11-2
- Build Dependencies:
- gnuconfig, aspell
- Run Dependencies:
- aspell
- Description:
- Spanish (es) dictionary for aspell.
aspera-cli¶
- Homepage:
- Spack package:
- Versions:
- 3.7.7
- Description:
- The Aspera CLI client for the Fast and Secure Protocol (FASP).
assimp¶
- Homepage:
- Spack package:
- Versions:
- master, 5.2.5, 5.2.4, 5.2.3, 5.2.2, 5.2.1, 5.1.4, 5.1.3, 5.0.1, 4.0.1
- Build Dependencies:
- cmake, gmake, ninja, pkgconfig, zlib
- Link Dependencies:
- zlib
- Description:
- Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.
astra¶
- Homepage:
- Spack package:
- Versions:
- 2020-02-03
- Build Dependencies:
- libxcb, libx11
- Link Dependencies:
- libxcb, libx11
- Description:
- A Space Charge Tracking Algorithm.
astral¶
- Homepage:
- Spack package:
- Versions:
- 5.7.1, 5.6.1, 4.10.7
- Build Dependencies:
- java, zip
- Run Dependencies:
- java
- Description:
- ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.
astyle¶
- Homepage:
- Spack package:
- Versions:
- 3.1, 3.0.1, 2.06, 2.05.1, 2.04
- Description:
- A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.
at-spi2-atk¶
- Homepage:
- Spack package:
- Versions:
- 2.38.0, 2.34.2, 2.26.2, 2.26.1
- Build Dependencies:
- meson, ninja, pkgconfig, at-spi2-core, atk
- Link Dependencies:
- at-spi2-core, atk
- Description:
- The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.
at-spi2-core¶
- Homepage:
- Spack package:
- Versions:
- 2.48.3, 2.48.0, 2.47.90, 2.40.1, 2.38.0, 2.36.0, 2.28.0
- Build Dependencies:
- meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
- Link Dependencies:
- glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
- Description:
- The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.
atf¶
- Homepage:
- Spack package:
- Versions:
- 0.21, 0.20, 0.19
- Build Dependencies:
- gnuconfig, m4, autoconf, automake, libtool
- Description:
- ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.
athena¶
- Homepage:
- Spack package:
- Versions:
- master, 4.2
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
- Link Dependencies:
- mpi, fftw
- Description:
- Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.
atk¶
- Homepage:
- Spack package:
- Versions:
- 2.38.0, 2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
- Build Dependencies:
- meson, glib, gettext, pkgconfig, gobject-introspection, libffi
- Link Dependencies:
- glib, gettext, gobject-introspection, libffi
- Description:
- ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
atlas¶
- Homepage:
- Spack package:
- Versions:
- 3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
- Description:
- Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.
atmi¶
- Homepage:
- Spack package:
- Versions:
- 5.4.3, 5.4.0, 5.3.3, 5.3.0, 5.2.3, 5.2.1, 5.2.0, 5.1.3, 5.1.0, 5.0.2, 5.0.0, 4.5.2, 4.5.0, 4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
- Build Dependencies:
- cmake, gmake, ninja, rsync
- Link Dependencies:
- rsync, comgr, hsa-rocr-dev, elf
- Description:
- Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).
atom-dft¶
- Homepage:
- Spack package:
- Versions:
- 4.2.6
- Build Dependencies:
- libgridxc, xmlf90
- Link Dependencies:
- libgridxc, xmlf90
- Description:
- ATOM is a program for DFT calculations in atoms and pseudopotential generation.
atompaw¶
- Homepage:
- Spack package:
- Versions:
- 4.2.0.2, 4.2.0.1, 4.2.0.0, 4.1.1.0, 4.0.0.13, 3.1.0.3
- Build Dependencies:
- gnuconfig, lapack, blas, libxc
- Link Dependencies:
- lapack, blas, libxc
- Description:
- A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf
atop¶
- Homepage:
- Spack package:
- Versions:
- 2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
- Build Dependencies:
- zlib, ncurses
- Link Dependencies:
- zlib, ncurses
- Description:
- Atop is an ASCII full-screen performance monitor for Linux
attr¶
- Homepage:
- Spack package:
- Versions:
- 2.4.48, 2.4.47, 2.4.46
- Build Dependencies:
- gnuconfig
- Description:
- Commands for Manipulating Filesystem Extended Attributes
audacious¶
- Homepage:
- Spack package:
- Versions:
- 4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
- Build Dependencies:
- gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
- Link Dependencies:
- gettext, iconv, glib, qt
- Description:
- A lightweight and versatile audio player.
audacity¶
- Homepage:
- Spack package:
- Versions:
- 2.4.2, 2.4.1, 2.4.0
- Build Dependencies:
- cmake, gmake, ninja, wxwidgets
- Link Dependencies:
- wxwidgets
- Description:
- Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.
audit-userspace¶
- Homepage:
- Spack package:
- Versions:
- 3.1.1, 2.8.5, 2.8.4, 2.8.3, 2.8.2
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4, openldap, swig
- Link Dependencies:
- openldap, swig
- Description:
- Linux audit userspace
augustus¶
- Homepage:
- Spack package:
- Versions:
- 3.5.0, 3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
- Build Dependencies:
- perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
- Link Dependencies:
- bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
- Run Dependencies:
- perl, python
- Description:
- AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences
authd¶
- Homepage:
- Spack package:
- Versions:
- 1.4.4
- Description:
- authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.
authselect¶
- Homepage:
- Spack package:
- Versions:
- 1.2.1, 1.2, 1.1
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4, popt
- Link Dependencies:
- popt
- Description:
- Select authentication and indentity profile to use on the system.
autoconf¶
- Homepage:
- Spack package:
- Versions:
- 2.71, 2.70, 2.69, 2.62, 2.59
- Build Dependencies:
- gnuconfig, m4, perl
- Run Dependencies:
- m4, perl
- Description:
- Autoconf -- system configuration part of autotools
autoconf-archive¶
- Homepage:
- Spack package:
- Versions:
- 2023.02.20, 2022.02.11, 2019.01.06
- Build Dependencies:
- gnuconfig
- Description:
- The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.
autodiff¶
- Homepage:
- Spack package:
- Versions:
- 1.0.1, 1.0.0, 0.6.12, 0.6.11, 0.6.10, 0.6.9, 0.6.8, 0.6.7, 0.6.6, 0.6.5, 0.6.4, 0.5.13
- Build Dependencies:
- cmake, gmake, ninja, eigen, py-pybind11
- Link Dependencies:
- eigen
- Run Dependencies:
- py-pybind11
- Test Dependencies:
- catch2
- Description:
- autodiff is automatic differentiation made easier for C++.
autodock-gpu¶
- Homepage:
- Spack package:
- Versions:
- develop
- Build Dependencies:
- cuda
- Link Dependencies:
- cuda
- Description:
- AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.
autodock-vina¶
- Homepage:
- Spack package:
- Versions:
- 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.2
- Build Dependencies:
- boost
- Link Dependencies:
- boost
- Description:
- AutoDock Vina is an open-source program for doing molecular docking
autofact¶
- Homepage:
- Spack package:
- Versions:
- 3_4
- Run Dependencies:
- perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
- Description:
- An Automatic Functional Annotation and Classification Tool
autogen¶
- Homepage:
- Spack package:
- Versions:
- 5.18.12
- Build Dependencies:
- gnuconfig, pkgconfig, guile, libxml2
- Link Dependencies:
- guile, libxml2
- Description:
- AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.
automaded¶
- Homepage:
- Spack package:
- Versions:
- 1.0
- Build Dependencies:
- cmake, gmake, ninja, mpi, boost, callpath
- Link Dependencies:
- mpi, boost, callpath
- Description:
- AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.
automake¶
- Homepage:
- Spack package:
- Versions:
- 1.16.5, 1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
- Build Dependencies:
- gnuconfig, autoconf, perl
- Run Dependencies:
- perl
- Description:
- Automake -- make file builder part of autotools
avizo¶
- Homepage:
- Spack package:
- Versions:
- 2020.1, 2019.4, 2019.3, 9.7.0
- Description:
- Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.
aws-ofi-nccl¶
- Homepage:
- Spack package:
- Versions:
- master
- Build Dependencies:
- gnuconfig, libfabric, cuda, nccl, mpi, autoconf, automake, libtool
- Link Dependencies:
- libfabric, cuda, nccl, mpi
- Description:
- AWS OFI NCCL is a plug-in which enables EC2 developers to use libfabric as a network provider while running NVIDIA's NCCL based applications.
aws-ofi-rccl¶
- Homepage:
- Spack package:
- Versions:
- master, cxi
- Build Dependencies:
- gnuconfig, libfabric, hip, rccl, mpi, autoconf, automake, libtool
- Link Dependencies:
- libfabric, hip, rccl, mpi
- Description:
- AWS OFI RCCL is a plug-in which enables EC2 developers to use libfabric as a network provider while running AMD's RCCL based applications.
aws-parallelcluster¶
- Homepage:
- Spack package:
- Versions:
- 2.11.9, 2.11.8, 2.11.7, 2.11.6, 2.11.5, 2.11.4, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
- Build Dependencies:
- python, py-pip, py-wheel, py-future, py-ipaddress, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools
- Run Dependencies:
- python, py-future, py-ipaddress, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools
- Description:
- AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.
aws-sdk-cpp¶
- Homepage:
- Spack package:
- Versions:
- 1.10.32, 1.9.247
- Build Dependencies:
- cmake, gmake, ninja, zlib, curl
- Link Dependencies:
- zlib, curl
- Description:
- AWS SDK for C++. The AWS SDK for C++ provides a modern C++ (version C++ 11 or later) interface for Amazon Web Services (AWS). It is meant to be performant and fully functioning with low- and high-level SDKs, while minimizing dependencies and providing platform portability (Windows, OSX, Linux, and mobile).
awscli¶
- Homepage:
- Spack package:
- Versions:
- 1.27.84, 1.27.56, 1.16.308, 1.16.179
- Build Dependencies:
- python, py-pip, py-wheel, py-setuptools, py-botocore, py-colorama, py-docutils, py-pyyaml, py-rsa, py-s3transfer
- Run Dependencies:
- python, py-botocore, py-colorama, py-docutils, py-pyyaml, py-rsa, py-s3transfer
- Description:
- This package provides a unified command line interface to Amazon Web Services
axel¶
- Homepage:
- Spack package:
- Versions:
- 2.17.10, 2.16.1
- Build Dependencies:
- gnuconfig, pkgconfig, gettext, openssl
- Link Dependencies:
- gettext, openssl
- Description:
- Axel is a light command line download accelerator for Linux and Unix
axl¶
- Homepage:
- Spack package:
- Versions:
- main, 0.8.0, 0.7.1, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.1
- Build Dependencies:
- cmake, gmake, ninja, kvtree
- Link Dependencies:
- kvtree, zlib
- Description:
- Asynchronous transfer library
axom¶
- Homepage:
- Spack package:
- Versions:
- develop, main, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
- Build Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, gmake, ninja, blt, mpi, conduit, hdf5, lua, scr, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
- Link Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, conduit, hdf5, lua, scr, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
- Description:
- Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.
azcopy¶
- Homepage:
- Spack package:
- Versions:
- 10.19.0, 10.18.1
- Build Dependencies:
- go
- Description:
- AzCopy is a command-line utility that you can use to copy data to and from containers and file shares in Azure Storage accounts.
babelflow¶
- Homepage:
- Spack package:
- Versions:
- 1.1.0, 1.0.1, 1.0.0
- Build Dependencies:
- cmake, gmake, ninja, mpi
- Link Dependencies:
- mpi
- Description:
- BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.
babelstream¶
- Homepage:
- Spack package:
- Versions:
- develop, main, 4.0
- Build Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, gmake, ninja, thrust, rocthrust, intel-oneapi-tbb, kokkos, rocm-opencl, intel-oneapi-compilers, pocl, opencl-c-headers
- Link Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, thrust, rocthrust, intel-oneapi-tbb, kokkos, rocm-opencl, intel-oneapi-compilers, pocl, opencl-c-headers
- Description:
- Measure memory transfer rates to/from global device memory on GPUs. This benchmark is similar in spirit, and based on, the STREAM benchmark for CPUs.
babeltrace¶
- Homepage:
- Spack package:
- Versions:
- 1.2.4
- Build Dependencies:
- gnuconfig, glib, uuid, popt
- Link Dependencies:
- glib, uuid, popt
- Description:
- Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.
babl¶
- Homepage:
- Spack package:
- Versions:
- 0.1.106, 0.1.102, 0.1.98, 0.1.96, 0.1.94, 0.1.92, 0.1.90
- Build Dependencies:
- meson, ninja, cmake, lcms, gobject-introspection
- Link Dependencies:
- lcms, gobject-introspection
- Description:
- babl is pixel encoding and color space conversion engine in C. It allows converting between different methods of storing pixels known as pixel formats that have with different bitdepths and other data representations, color models, color spaces and component permutations.
bacio¶
- Homepage:
- Spack package:
- Versions:
- develop, 2.6.0, 2.5.0, 2.4.1
- Build Dependencies:
- cmake, gmake, ninja
- Description:
- The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.
backupninja¶
- Homepage:
- Spack package:
- Versions:
- master
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4, bash, gawk
- Description:
- Backupninja backup tool.
bam-readcount¶
- Homepage:
- Spack package:
- Versions:
- 0.8.0
- Build Dependencies:
- cmake, gmake, ninja
- Description:
- Bam-readcount generates metrics at single nucleotide positions.
bamaddrg¶
- Homepage:
- Spack package:
- Versions:
- 0.1
- Build Dependencies:
- bamtools
- Description:
- bamaddrg adds read groups to input BAM files, streams BAM output on stdout
bamdst¶
- Homepage:
- Spack package:
- Versions:
- master
- Build Dependencies:
- zlib
- Link Dependencies:
- zlib
- Description:
- Bamdst is a a lightweight bam file depth statistical tool.
bamtools¶
- Homepage:
- Spack package:
- Versions:
- 2.5.2, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
- Build Dependencies:
- cmake, gmake, ninja, jsoncpp
- Link Dependencies:
- zlib, jsoncpp
- Description:
- C++ API & command-line toolkit for working with BAM data.
bamutil¶
- Homepage:
- Spack package:
- Versions:
- 1.0.15, 1.0.13
- Build Dependencies:
- zlib, git
- Link Dependencies:
- zlib
- Description:
- bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.
banner¶
- Homepage:
- Spack package:
- Versions:
- 1.3.5
- Build Dependencies:
- gnuconfig
- Description:
- banner is a classic-style banner program similar to the one found in Solaris or AIX in the late 1990s. The banner program prints a short string to the console in very large letters.
bannergrab¶
- Homepage:
- Spack package:
- Versions:
- master
- Description:
- Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.
barrnap¶
- Homepage:
- Spack package:
- Versions:
- 0.9, 0.8, 0.7, 0.6
- Run Dependencies:
- hmmer
- Description:
- Barrnap predicts the location of ribosomal RNA genes in genomes.
bart¶
- Homepage:
- Spack package:
- Versions:
- 0.7.00, 0.6.00, 0.5.00
- Build Dependencies:
- cuda, libpng, fftw, blas, lapack, python
- Link Dependencies:
- cuda, libpng, fftw, blas, lapack
- Run Dependencies:
- py-numpy, py-matplotlib, python
- Description:
- BART: Toolbox for Computational Magnetic Resonance Imaging
barvinok¶
- Homepage:
- Spack package:
- Versions:
- 0.41.5
- Build Dependencies:
- gnuconfig, gmp, ntl, llvm, libyaml
- Link Dependencies:
- gmp, ntl, llvm, libyaml
- Description:
- barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.
bash¶
- Homepage:
- Spack package:
- Versions:
- 5.2, 5.1, 5.0, 4.4, 4.3
- Build Dependencies:
- gnuconfig, ncurses, readline, iconv, gettext
- Link Dependencies:
- ncurses, readline, iconv, gettext
- Description:
- The GNU Project's Bourne Again SHell.
bash-completion¶
- Homepage:
- Spack package:
- Versions:
- develop, 2.7, 2.3
- Build Dependencies:
- gnuconfig, automake, autoconf, libtool
- Run Dependencies:
- bash
- Description:
- Programmable completion functions for bash.
bashtop¶
- Homepage:
- Spack package:
- Versions:
- 0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
- Description:
- Linux resource monitor.
bat¶
- Homepage:
- Spack package:
- Versions:
- 0.23.0, 0.21.0, 0.13.0, 0.12.1
- Build Dependencies:
- rust
- Link Dependencies:
- rust
- Description:
- A cat(1) clone with wings.
batchedblas¶
- Homepage:
- Spack package:
- Versions:
- 1.0
- Build Dependencies:
- blas
- Link Dependencies:
- blas
- Description:
- Batched BLAS is one of the new approaches for a task-based BLAS invocation, and it is defined as a new interface that allows users to execute multiple independent BLAS operations as a single subroutine call
batctl¶
- Homepage:
- Spack package:
- Versions:
- 2019.5, 2019.4, 2019.3, 2019.2
- Build Dependencies:
- libnl
- Link Dependencies:
- libnl
- Description:
- B.A.T.M.A.N. advanced control and management tool
bats¶
- Homepage:
- Spack package:
- Versions:
- 0.4.0
- Description:
- Bats is a TAP-compliant testing framework for Bash.
baurmc¶
- Homepage:
- Spack package:
- Versions:
- 1.0
- Build Dependencies:
- gnuconfig
- Description:
- Baur's Monte Carlo package for simulating W+ gamma production at hadron colliders provides full electroweak calculation upto O(alpha) and contains higher order QCD corrections as well.
bazel¶
- Homepage:
- Spack package:
- Versions:
- 6.1.1, 6.1.0, 6.0.0, 5.4.0, 5.3.2, 5.3.1, 5.3.0, 5.2.0, 5.1.1, 5.1.0, 5.0.0, 4.2.3, 4.2.2, 4.2.1, 4.2.0, 4.1.0, 4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.0, 0.1.4, 0.1.1
- Build Dependencies:
- java, python, zip
- Run Dependencies:
- java, python, zip
- Description:
- Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.
bbcp¶
- Homepage:
- Spack package:
- Versions:
- master
- Build Dependencies:
- zlib, openssl, libnsl
- Link Dependencies:
- zlib, openssl, libnsl
- Description:
- Securely and quickly copy data from source to target
bbmap¶
- Homepage:
- Spack package:
- Versions:
- 39.01, 38.63, 37.78, 37.36
- Build Dependencies:
- java
- Link Dependencies:
- java
- Description:
- Short read aligner for DNA and RNA-seq data.
bc¶
- Homepage:
- Spack package:
- Versions:
- 1.07.1, 1.07
- Build Dependencies:
- gnuconfig, ed, texinfo
- Description:
- bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.
bcache¶
- Homepage:
- Spack package:
- Versions:
- 1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
- Build Dependencies:
- uuid, util-linux, gettext, pkgconfig
- Link Dependencies:
- uuid, util-linux, gettext
- Description:
- Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.
bcftools¶
- Homepage:
- Spack package:
- Versions:
- 1.16, 1.15.1, 1.14, 1.13, 1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
- Build Dependencies:
- gnuconfig, gsl, perl, htslib
- Link Dependencies:
- gsl, htslib
- Run Dependencies:
- py-matplotlib, perl
- Description:
- BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.
bcl2fastq2¶
- Homepage:
- Spack package:
- Versions:
- 2.20.0.422, 2.19.1.403
- Build Dependencies:
- boost, cmake, libxml2, libxslt, libgcrypt, zlib
- Link Dependencies:
- boost, libxml2, libxslt, libgcrypt, zlib
- Description:
- The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.
bdftopcf¶
- Homepage:
- Spack package:
- Versions:
- 1.1, 1.0.5
- Build Dependencies:
- gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
- Link Dependencies:
- libxfont, xproto, fontsproto
- Description:
- bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.
bdii¶
- Homepage:
- Spack package:
- Versions:
- 6.0.1, 5.2.25, 5.2.24
- Run Dependencies:
- openldap
- Description:
- The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.
bdsim¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.6.0
- Build Dependencies:
- cmake, gmake, ninja, geant4, root, clhep, flex, bison
- Link Dependencies:
- cmake, geant4, root, clhep, flex, bison
- Description:
- Beam Delivery Simulation (BDSIM) is a C++ program that utilises the Geant4 toolkit to simulate both the transport of particles in an accelerator and their interaction with the accelerator material
bdw-gc¶
- Homepage:
- Spack package:
- Versions:
- 8.2.2, 8.0.6, 8.0.0, 7.6.0, 7.4.4
- Build Dependencies:
- gnuconfig, libatomic-ops
- Link Dependencies:
- libatomic-ops
- Description:
- The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.
beagle¶
- Homepage:
- Spack package:
- Versions:
- 5.4, 5.1, 5.0, 4.1
- Run Dependencies:
- java
- Description:
- Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.
beakerlib¶
- Homepage:
- Spack package:
- Versions:
- 1.29.3, 1.20, 1.19, 1.18.1
- Description:
- BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.
bear¶
- Homepage:
- Spack package:
- Versions:
- 3.0.20, 3.0.19, 3.0.18, 3.0.0, 2.2.0, 2.0.4
- Build Dependencies:
- cmake, gmake, ninja, pkgconfig, fmt, grpc, nlohmann-json, spdlog, python
- Link Dependencies:
- pkgconfig, fmt, grpc, nlohmann-json, spdlog
- Test Dependencies:
- googletest
- Description:
- Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.
beast-tracer¶
- Homepage:
- Spack package:
- Versions:
- 1.7.2, 1.7.1
- Build Dependencies:
- ant, java
- Run Dependencies:
- java
- Description:
- Tracer is a graphical tool for visualization and diagnostics of MCMC output.
beast1¶
- Homepage:
- Spack package:
- Versions:
- 1.10.4, 1.8.4
- Build Dependencies:
- libbeagle
- Link Dependencies:
- libbeagle
- Run Dependencies:
- java, libbeagle
- Description:
- BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.
beast2¶
- Homepage:
- Spack package:
- Versions:
- 2.7.4, 2.6.7, 2.6.4, 2.6.3, 2.5.2, 2.4.6
- Build Dependencies:
- java, javafx
- Link Dependencies:
- java, javafx
- Description:
- BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.
bedops¶
- Homepage:
- Spack package:
- Versions:
- 2.4.41, 2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
- Description:
- BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.
bedtools2¶
- Homepage:
- Spack package:
- Versions:
- 2.31.0, 2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
- Build Dependencies:
- zlib, bzip2, xz, python
- Link Dependencies:
- zlib, bzip2, xz
- Description:
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.
beforelight¶
- Homepage:
- Spack package:
- Versions:
- 1.0.6, 1.0.5
- Build Dependencies:
- gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
- Link Dependencies:
- libx11, libxscrnsaver, libxt
- Description:
- The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.
benchmark¶
- Homepage:
- Spack package:
- Versions:
- main, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
- Build Dependencies:
- cmake, gmake, ninja
- Description:
- A microbenchmark support library
berkeley-db¶
- Homepage:
- Spack package:
- Versions:
- 18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
- Build Dependencies:
- gnuconfig
- Description:
- Oracle Berkeley DB
berkeleygw¶
- Homepage:
- Spack package:
- Versions:
- 3.0.1, 3.0, 2.1
- Build Dependencies:
- blas, lapack, mpi, scalapack, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py, fftw, amdfftw, openblas, amdblis
- Link Dependencies:
- blas, lapack, mpi, scalapack, hdf5, elpa, fftw-api, fftw, amdfftw, openblas, amdblis
- Run Dependencies:
- python, py-numpy, py-setuptools, py-h5py
- Test Dependencies:
- perl
- Description:
- BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.
bertini¶
- Homepage:
- Spack package:
- Versions:
- 1.5
- Build Dependencies:
- gnuconfig, flex, bison, gmp, mpfr, mpi
- Link Dependencies:
- gmp, mpfr, mpi
- Description:
- Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.
bgpdump¶
- Homepage:
- Spack package:
- Versions:
- master
- Build Dependencies:
- gnuconfig, m4, autoconf, automake, libtool, bzip2
- Link Dependencies:
- bzip2
- Description:
- Utility and C Library for parsing MRT files
bib2xhtml¶
- Homepage:
- Spack package:
- Versions:
- 3.0-79-ge935
- Run Dependencies:
- texlive
- Description:
- bib2xhtml is a program that converts BibTeX files into HTML.
bigdft-atlab¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.9.2, 1.9.1, 1.9.0
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, mpi, openbabel, bigdft-futile
- Link Dependencies:
- mpi, openbabel, bigdft-futile
- Description:
- BigDFT-atlab: library for ATomic related operations.
bigdft-chess¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.9.2, 1.9.1, 1.9.0
- Build Dependencies:
- cuda, gnuconfig, autoconf, automake, libtool, python, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
- Link Dependencies:
- cuda, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
- Run Dependencies:
- python
- Description:
- BigDFT-CheSS: A module for performing Fermi Operator Expansions via Chebyshev Polynomials.
bigdft-core¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.9.2, 1.9.1, 1.9.0
- Build Dependencies:
- cuda, gnuconfig, autoconf, automake, libtool, python, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
- Link Dependencies:
- cuda, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
- Run Dependencies:
- python
- Description:
- BigDFT-core: the core components of BigDFT, an electronic structure calculation based on Daubechies wavelets.
bigdft-futile¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.9.2, 1.9.1, 1.9.0
- Build Dependencies:
- cuda, gnuconfig, autoconf, automake, libtool, python, blas, lapack, libyaml, py-pyyaml, mpi
- Link Dependencies:
- cuda, blas, lapack, libyaml, py-pyyaml, mpi
- Run Dependencies:
- python
- Description:
- BigDFT-futile: a library handling most common FORTRAN low-level operations, like memory managment, profiling routines, I/O operations. It also supports yaml output and parsing for fortran programs. It also provides wrappers routines to MPI and linear algebra operations. This library is intensively used in BigDFT packages.
bigdft-libabinit¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.9.2, 1.9.1, 1.9.0
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, python, mpi, libxc, bigdft-futile
- Link Dependencies:
- mpi, libxc, bigdft-futile
- Run Dependencies:
- python
- Description:
- BigDFT-libABINIT: this is a subsection of files coming from ABINIT software package, to which BigDFT has been coupled since the early days. It handles different parts like symmetries, ewald corrections, PAW routines, density and potential mixing routines and some MD minimizers.
bigdft-psolver¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.9.2, 1.9.1, 1.9.0
- Build Dependencies:
- cuda, gnuconfig, autoconf, automake, libtool, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
- Link Dependencies:
- cuda, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
- Run Dependencies:
- python
- Description:
- BigDFT-Psolver: a flexible real-space Poisson Solver based on Interpolating Scaling Functions. It constitutes a fundamental building block of BigDFT code, and it can also be used separately and linked to other codes.
bigdft-spred¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.9.2, 1.9.1, 1.9.0
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
- Link Dependencies:
- blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
- Run Dependencies:
- python
- Description:
- BigDFT-spred: a library for structure prediction tools, that is compiled on top of BigDFT routines.
bigdft-suite¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.9.2, 1.9.1, 1.9.0
- Build Dependencies:
- bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
- Link Dependencies:
- bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
- Run Dependencies:
- python
- Description:
- BigDFT-suite: the complete suite of BigDFT for electronic structure calculation based on Daubechies wavelets.
bigreqsproto¶
- Homepage:
- Spack package:
- Versions:
- 1.1.2
- Build Dependencies:
- gnuconfig, pkgconfig, util-macros
- Description:
- Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.
bind9¶
- Homepage:
- Spack package:
- Versions:
- 9_14_6
- Build Dependencies:
- gnuconfig, pkgconfig
- Link Dependencies:
- libuv, openssl, iconv
- Description:
- BIND 9 has evolved to be a very flexible, full-featured DNS system.
binutils¶
- Homepage:
- Spack package:
- Versions:
- 2.40, 2.39, 2.38, 2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.30, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
- Build Dependencies:
- gnuconfig, pkgconfig, zstd, zlib, diffutils, gettext, dejagnu, m4, bison, texinfo
- Link Dependencies:
- zstd, zlib, gettext
- Description:
- GNU binutils, which contain the linker, assembler, objdump and others
bioawk¶
- Homepage:
- Spack package:
- Versions:
- 1.0
- Build Dependencies:
- zlib, bison
- Link Dependencies:
- zlib
- Description:
- Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.
biobambam2¶
- Homepage:
- Spack package:
- Versions:
- 2.0.177
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4, libmaus2
- Link Dependencies:
- libmaus2
- Description:
- Tools for early stage alignment file processing
biobloom¶
- Homepage:
- Spack package:
- Versions:
- 2.3.5, 2.2.0
- Build Dependencies:
- gnuconfig, boost, sdsl-lite, sparsehash, zlib
- Link Dependencies:
- boost, sdsl-lite, sparsehash, zlib
- Description:
- BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.
biopieces¶
- Homepage:
- Spack package:
- Versions:
- 2016-04-12
- Build Dependencies:
- perl, perl-module-build, perl-bit-vector, perl-svg, perl-termreadkey, perl-time-hires, perl-dbi, perl-xml-parser, perl-carp-clan, perl-class-inspector, perl-html-parser, perl-libwww-perl, perl-soap-lite, perl-uri, perl-inline, perl-inline-c, perl-parse-recdescent, perl-perl-version, perl-db-file, perl-dbd-mysql, ruby, ruby-gnuplot, ruby-narray, ruby-rubyinline, ruby-terminal-table, python, blast-plus, muscle, mummer, blat, vmatch, bowtie, bwa, usearch, velvet, idba, ray, scan-for-matches
- Link Dependencies:
- ruby, ruby-gnuplot, ruby-narray, ruby-rubyinline, ruby-terminal-table, blast-plus, muscle, mummer, blat, vmatch, bowtie, bwa, usearch, velvet, idba, ray, scan-for-matches
- Run Dependencies:
- perl, perl-module-build, perl-bit-vector, perl-svg, perl-termreadkey, perl-time-hires, perl-dbi, perl-xml-parser, perl-carp-clan, perl-class-inspector, perl-html-parser, perl-libwww-perl, perl-soap-lite, perl-uri, perl-inline, perl-inline-c, perl-parse-recdescent, perl-perl-version, perl-db-file, perl-dbd-mysql, python
- Description:
- The Biopieces are a collection of bioinformatics tools that can be pieced together in a very easy and flexible manner to perform both simple and complex tasks.
bird¶
- Homepage:
- Spack package:
- Versions:
- 2.0.2, 2.0.1
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
- Link Dependencies:
- ncurses, readline
- Description:
- The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.
bismark¶
- Homepage:
- Spack package:
- Versions:
- 0.23.0, 0.19.0, 0.18.2
- Run Dependencies:
- bowtie2, perl, samtools
- Description:
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states
bison¶
- Homepage:
- Spack package:
- Versions:
- 3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
- Build Dependencies:
- gnuconfig, diffutils, m4, perl
- Run Dependencies:
- m4
- Description:
- Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
bitgroomingz¶
- Homepage:
- Spack package:
- Versions:
- master, 2022-10-14
- Build Dependencies:
- cmake, gmake, ninja, zlib
- Link Dependencies:
- zlib
- Description:
- BGZ: Bit Grooming Compressor
bitlbee¶
- Homepage:
- Spack package:
- Versions:
- 3.6-1, 3.6, 3.5-2
- Build Dependencies:
- gnuconfig, glib, gnutls, libgcrypt
- Link Dependencies:
- glib, gnutls, libgcrypt
- Description:
- An IRC to other chat networks gateway.
bitmap¶
- Homepage:
- Spack package:
- Versions:
- 1.1.0, 1.0.8
- Build Dependencies:
- gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
- Link Dependencies:
- libx11, libxmu, libxaw, libxt, xbitmaps, xproto
- Description:
- bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.
bitsery¶
- Homepage:
- Spack package:
- Versions:
- 5.1.0
- Build Dependencies:
- cmake, gmake, ninja
- Description:
- Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.
blackhat¶
- Homepage:
- Spack package:
- Versions:
- 0.9.9
- Build Dependencies:
- gnuconfig, qd, python
- Link Dependencies:
- qd, python
- Run Dependencies:
- python
- Description:
- Blackhat MC generator
blaspp¶
- Homepage:
- Spack package:
- Versions:
- master, 2022.07.00, 2022.05.00, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
- Build Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, gmake, ninja, blas, llvm-openmp, rocblas
- Link Dependencies:
- llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
- Description:
- C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.
blast-legacy¶
- Homepage:
- Spack package:
- Versions:
- 2.2.26
- Build Dependencies:
- tcsh
- Description:
- Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'
blast-plus¶
- Homepage:
- Spack package:
- Versions:
- 2.13.0, 2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
- Build Dependencies:
- gnuconfig, cpio, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
- Link Dependencies:
- jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
- Description:
- Basic Local Alignment Search Tool.
blast2go¶
- Homepage:
- Spack package:
- Versions:
- 5.2.5
- Build Dependencies:
- bash, java
- Run Dependencies:
- blast-plus
- Description:
- Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.
blat¶
- Homepage:
- Spack package:
- Versions:
- 37, 35
- Build Dependencies:
- libpng, libuuid, mysql-client
- Link Dependencies:
- libpng, libuuid, mysql-client
- Description:
- BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.
blaze¶
- Homepage:
- Spack package:
- Versions:
- master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
- Build Dependencies:
- cmake, gmake, ninja, blas, lapack, boost, hpx
- Link Dependencies:
- blas, lapack, boost, hpx
- Description:
- Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.
blis¶
- Homepage:
- Spack package:
- Versions:
- master, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
- Build Dependencies:
- python
- Run Dependencies:
- python
- Description:
- BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.
bliss¶
- Homepage:
- Spack package:
- Versions:
- 0.73
- Build Dependencies:
- gmp, libtool
- Link Dependencies:
- gmp
- Description:
- bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs
blitz¶
- Homepage:
- Spack package:
- Versions:
- 1.0.2
- Build Dependencies:
- gnuconfig, python
- Description:
- N-dimensional arrays for C++
blktrace¶
- Homepage:
- Spack package:
- Versions:
- 1.3.0, 1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
- Build Dependencies:
- libaio
- Link Dependencies:
- libaio
- Description:
- blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.
bloaty¶
- Homepage:
- Spack package:
- Versions:
- 1.1
- Build Dependencies:
- cmake, gmake, ninja
- Description:
- Bloaty McBloatface: a size profiler for binaries.
blogbench¶
- Homepage:
- Spack package:
- Versions:
- 1.1, 1.0
- Build Dependencies:
- gnuconfig
- Description:
- A filesystem benchmark tool that simulates a realistic load.
blt¶
- Homepage:
- Spack package:
- Versions:
- develop, main, 0.5.2, 0.5.1, 0.5.0, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
- Run Dependencies:
- cmake
- Description:
- BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.
bmake¶
- Homepage:
- Spack package:
- Versions:
- 20230303, 20220330, 20200710, 20180512, 20171207
- Description:
- Portable version of NetBSD make(1).
bmi¶
- Homepage:
- Spack package:
- Versions:
- main, 2.8.1
- Build Dependencies:
- gnuconfig, autoconf, automake
- Description:
- a communications framework and network abstraction layer
bml¶
- Homepage:
- Spack package:
- Versions:
- master, 2.2.0, 2.1.2, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
- Build Dependencies:
- cmake, gmake, ninja, blas, lapack, mpi, python
- Link Dependencies:
- blas, lapack, mpi
- Description:
- The basic matrix library (bml) is an implementation of various matrix data formats (dense and sparse) and their associated algorithms for basic matrix operations used electronic structure solvers.
bohrium¶
- Homepage:
- Spack package:
- Versions:
- develop, 0.9.1, 0.9.0
- Build Dependencies:
- cuda, cmake, gmake, ninja, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, py-virtualenv, py-pip, py-wheel, zlib, libsigsegv
- Link Dependencies:
- cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib, libsigsegv
- Run Dependencies:
- python, py-numpy
- Test Dependencies:
- python, py-numpy
- Description:
- Library for automatic acceleration of array operations
boinc-client¶
- Homepage:
- Spack package:
- Versions:
- 7.16.5
- Build Dependencies:
- gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
- Link Dependencies:
- curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
- Description:
- BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.
bolt¶
- Homepage:
- Spack package:
- Versions:
- main, 2.0, 1.0.1, 1.0
- Build Dependencies:
- cmake, gmake, ninja, argobots, autoconf, automake, libtool
- Link Dependencies:
- argobots
- Description:
- BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.
bonniepp¶
- Homepage:
- Spack package:
- Versions:
- 1.98
- Build Dependencies:
- gnuconfig
- Description:
- Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.
bookleaf-cpp¶
- Homepage:
- Spack package:
- Versions:
- develop, 2.0.2, 2.0.1, 2.0
- Build Dependencies:
- cmake, gmake, ninja, caliper, parmetis, silo, typhon, mpi, yaml-cpp
- Link Dependencies:
- caliper, parmetis, silo, typhon, mpi, yaml-cpp
- Description:
- BookLeaf is a 2D unstructured hydrodynamics mini-app.
boost¶
- Homepage:
- Spack package:
- Versions:
- develop, 1.82.0, 1.81.0, 1.80.0, 1.79.0, 1.78.0, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0
- Build Dependencies:
- icu4c, python, mpi, bzip2, zlib, zstd, xz, py-numpy
- Link Dependencies:
- icu4c, python, mpi, bzip2, zlib, zstd, xz
- Run Dependencies:
- py-numpy
- Description:
- Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.
boostmplcartesianproduct¶
- Homepage:
- Spack package:
- Versions:
- 20161205
- Description:
- Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.
botan¶
- Homepage:
- Spack package:
- Versions:
- 3.0.0, 2.19.3, 2.19.2, 2.19.1, 2.19.0, 2.18.2, 2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
- Build Dependencies:
- python, py-sphinx
- Description:
- Crypto and TLS for Modern C++
bowtie¶
- Homepage:
- Spack package:
- Versions:
- 1.3.1, 1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
- Build Dependencies:
- tbb, zlib
- Link Dependencies:
- tbb, zlib
- Description:
- Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.
bowtie2¶
- Homepage:
- Spack package:
- Versions:
- 2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5