Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 5745 mainline packages:

3dtk nss py-tpot
3proxy ntirpc py-tqdm
abduco ntpoly py-traceback2
abi-compliance-checker numactl py-traitlets
abi-dumper numamma py-traits
abinit numap py-traitsui
abseil-cpp numdiff py-transformers
abyss nut py-treehash
accfft nvdimmsim py-tuiview
acct nvhpc py-twine
accumulo nvptx-tools py-twisted
ace nvshmem py-typed-ast
ack nvtop py-typesentry
acl nwchem py-typing
acpica-tools nyancat py-typing-extensions
acpid ocaml py-tzlocal
activeharmony ocamlbuild py-ucsf-pyem
activemq occa py-ucx-py
acts oce py-ujson
addrwatch oci-systemd-hook py-umalqurra
adept-utils ocl-icd py-umi-tools
adf oclgrind py-uncertainties
adiak oclint py-unicycler
adios oclock py-unidecode
adios2 octave py-unittest2
adlbx octave-arduino py-unittest2py3k
admixtools octave-control py-unshare
adms octave-gsl py-update-checker
adol-c octave-instrctl py-uproot
advancecomp octave-io py-uproot3
adwaita-icon-theme octave-optim py-uproot3-methods
aegean octave-quaternion py-uproot4
aeskeyfind octave-signal py-uritemplate
aespipe octave-splines py-urllib3
agrep octave-statistics py-urwid
aida octave-struct py-us
akantu octave-symbolic py-usgs
alan octopus py-utils
albany odc py-uvloop
albert of-catalyst py-uvw
alembic of-precice py-uwsgi
alglib omega-h py-vcf-kit
allpaths-lg ompss py-vcrpy
alluxio ompt-openmp py-vcstool
alpaka onednn py-vcstools
alps oniguruma py-vcversioner
alquimia onnx py-vermin
alsa-lib ont-albacore py-versioneer
aluminum opa-psm2 py-vine
ambari opam py-virtualenv
amber opari2 py-virtualenv-clone
amdblis open-iscsi py-virtualenvwrapper
amdfftw open-isns py-visdom
amdlibflame openal-soft py-voluptuous
amdlibm openbabel py-vsc-base
amdscalapack openblas py-vsc-install
amg opencascade py-vsts
amg2013 opencl-c-headers py-vsts-cd-manager
amgx opencl-clhpp py-walinuxagent
aml opencl-headers py-wand
amp opencoarrays py-wandb
ampl opencv py-warlock
ampliconnoise opendx py-warpx
amr-wind openexr py-wasabi
amrex openfast py-watchdog
amrvis openfdtd py-wcsaxes
anaconda2 openfoam py-wcwidth
anaconda3 openfoam-org py-weave
andi openfst py-webencodings
angsd opengl py-webkit-server
ant openglu py-weblogo
antimony openimageio py-webob
antlr openipmi py-websocket-client
ants openjdk py-websockets
aocc openjpeg py-werkzeug
aocl-sparse openkim-models py-wget
aoflagger openldap py-whatshap
aom openloops py-wheel
aomp openmc py-whichcraft
apachetop openmm py-whoosh
apcomp openmolcas py-widgetsnbextension
ape openmpi py-wincertstore
aperture-photometry openmx py-word2number
apex opennurbs py-workload-automation
apfel openpa py-wradlib
apple-libunwind openpbs py-wrapt
apple-libuuid openpmd-api py-wstool
applewmproto openrasmol py-wub
appres openresty py-wxmplot
apr openscenegraph py-wxpython
apr-util openslide py-xarray
aragorn openslp py-xattr
arbor openspeedshop py-xdot
arborx openspeedshop-utils py-xenv
archer openssh py-xgboost
argobots openssl py-xlrd
argon2 openstf py-xlsxwriter
argp-standalone opensubdiv py-xlwt
args opentsdb py-xmlrunner
argtable openvdb py-xmltodict
aria2 openvslam py-xopen
arm openwsman py-xpyb
arm-forge opium py-xvfbwrapper
armadillo optional-lite py-xxhash
arpack-ng optipng py-yacs
arrayfire opus py-yahmm
arrow oracle-instant-client py-yajl
asagi orbit2 py-yamlreader
ascent orc py-yapf
asciidoc orca py-yarl
asciidoc-py3 orfm py-yolk3k
asdcplib orientdb py-youtube-dl
asdf-cxx orthofiller py-yt
asio orthofinder py-ytopt
aspa orthomcl py-zarr
aspcud osi py-zc-buildout
aspect osmctools py-zc-lockfile
aspell osqp py-zict
aspell6-de ossp-uuid py-zipp
aspell6-en osu-micro-benchmarks py-zope-event
aspell6-es otf py-zope-interface
aspera-cli otf2 py-zxcvbn
assimp p11-kit pythia6
astra p3dfft3 pythia8
astral p4est python
astyle p7zip q-e-sirius
at-spi2-atk pacbio-daligner qbank
at-spi2-core pacbio-damasker qbox
atf pacbio-dazz-db qca
athena pacbio-dextractor qcachegrind
atk pacifica-cli qd
atlas packmol qemu
atmi pacparser qgis
atom-dft pacvim qgraf
atompaw pagit qhull
atop pagmo qjson
attr pajeng qmcpack
audacious pal qmd-progress
audacity paml qnnpack
audit-userspace panda qorts
augustus pandaseq qperf
authd pandoc qrupdate
authselect pango qscintilla
autoconf pangolin qt
autoconf-archive pangomm qt-creator
autodock-gpu papi qtgraph
autodock-vina papyrus qthreads
autofact paradiseo qtkeychain
autogen parallel quantum-espresso
automaded parallel-netcdf quartz
automake parallelio qucs
avizo parallelmergetree quicksilver
aws-parallelcluster paraver quinoa
awscli paraview quota
axel parflow qwt
axl parmetis qwtpolar
axom parmgridgen r
babelflow parquet-cpp r-a4
babeltrace parquet-format r-a4base
backupninja parsec r-a4classif
bam-readcount parsimonator r-a4core
bamaddrg parsplice r-a4preproc
bamdst partitionfinder r-a4reporting
bamtools pasta r-abadata
bamutil patch r-abaenrichment
bannergrab patchelf r-abind
barrnap patchutils r-absseq
bart pathfinder r-acde
barvinok pax-utils r-acepack
bash pbbam r-acgh
bash-completion pbmpi r-acme
bashtop pbsuite r-ada
bat pciutils r-adabag
batctl pcl r-ade4
bats pcma r-adegenet
bazel pcre r-adegraphics
bbcp pcre2 r-adephylo
bbmap pdc r-adespatial
bc pdf2svg r-adgoftest
bcache pdftk r-adsplit
bcftools pdsh r-aer
bcl2fastq2 pdt r-afex
bdftopcf pegtl r-affxparser
bdii pennant r-affy
bdw-gc percept r-affycomp
beagle percona-server r-affycompatible
beakerlib perfstubs r-affycontam
bear perl r-affycoretools
beast-tracer perl-acme-damn r-affydata
beast1 perl-algorithm-diff r-affyexpress
beast2 perl-alien-build r-affyilm
bedops perl-alien-libxml2 r-affyio
bedtools2 perl-alien-svn r-affypdnn
beforelight perl-app-cmd r-affyplm
benchmark perl-array-utils r-affyqcreport
berkeley-db perl-b-hooks-endofscope r-affyrnadegradation
bertini perl-bio-searchio-hmmer r-agdex
bgpdump perl-bioperl r-agilp
bib2xhtml perl-bit-vector r-agimicrorna
bigreqsproto perl-cairo r-aims
bind9 perl-capture-tiny r-aldex2
binutils perl-carp-clan r-allelicimbalance
bioawk perl-cgi r-alpine
biobambam2 perl-class-data-inheritable r-als
biobloom perl-class-inspector r-alsace
biopieces perl-class-load r-altcdfenvs
bird perl-class-load-xs r-amap
bismark perl-clone r-amelia
bison perl-clone-choose r-ampliqueso
bitlbee perl-compress-raw-bzip2 r-analysispageserver
bitmap perl-compress-raw-zlib r-anaquin
bitsery perl-config-general r-aneufinder
blaspp perl-contextual-return r-aneufinderdata
blasr perl-cpan-meta-check r-animation
blasr-libcpp perl-data-dumper r-annaffy
blast-legacy perl-data-optlist r-annotate
blast-plus perl-data-stag r-annotationdbi
blast2go perl-date-manip r-annotationfilter
blat perl-db-file r-annotationforge
blaze perl-dbd-mysql r-annotationhub
blis perl-dbd-pg r-anytime
bliss perl-dbd-sqlite r-aod
blitz perl-dbi r-ape
blktrace perl-devel-cycle r-argparse
bloaty perl-devel-globaldestruction r-aroma-light
blogbench perl-devel-overloadinfo r-askpass
blt perl-devel-stacktrace r-assertive
bmake perl-devel-symdump r-assertive-base
bmi perl-digest-md5 r-assertive-code
bml perl-dist-checkconflicts r-assertive-data
bohrium perl-encode-locale r-assertive-data-uk
boinc-client perl-error r-assertive-data-us
bolt perl-eval-closure r-assertive-datetimes
bonniepp perl-exception-class r-assertive-files
bookleaf-cpp perl-exporter-lite r-assertive-matrices
boost perl-exporter-tiny r-assertive-models
boostmplcartesianproduct perl-extutils-config r-assertive-numbers
botan perl-extutils-depends r-assertive-properties
bowtie perl-extutils-helpers r-assertive-reflection
bowtie2 perl-extutils-installpaths r-assertive-sets
boxlib perl-extutils-makemaker r-assertive-strings
bpp-core perl-extutils-pkgconfig r-assertive-types
bpp-phyl perl-ffi-checklib r-assertthat
bpp-phyl-omics perl-file-chdir r-backports
bpp-seq perl-file-copy-recursive r-bamsignals
bpp-seq-omics perl-file-homedir r-base64
bpp-suite perl-file-listing r-base64enc
bracken perl-file-pushd r-bayesm
braker perl-file-sharedir-install r-bayesplot
branson perl-file-slurp r-bbmisc
breakdancer perl-file-slurp-tiny r-beachmat
bref3 perl-file-slurper r-beanplot
breseq perl-file-which r-beeswarm
bridger perl-font-ttf r-bfast
brigand perl-forks r-bfastspatial
brltty perl-gd r-bglr
brotli perl-gdgraph r-bh
brpc perl-gdgraph-histogram r-biasedurn
brynet perl-gdtextutil r-bibtex
bsseeker2 perl-getopt-tabular r-bigalgebra
bubblewrap perl-graph r-bigmemory
bucky perl-graph-readwrite r-bigmemory-sri
buddy perl-hash-merge r-bindr
bumpversion perl-html-parser r-bindrcpp
busco perl-html-tagset r-bio3d
busybox perl-http-cookies r-biobase
butter perl-http-daemon r-biocfilecache
butterflypack perl-http-date r-biocgenerics
bwa perl-http-message r-biocinstaller
bwtool perl-http-negotiate r-biocmanager
byacc perl-inline r-biocneighbors
byobu perl-inline-c r-biocparallel
byte-unixbench perl-io-all r-biocsingular
byteman perl-io-compress r-biocstyle
bzip2 perl-io-html r-biocversion
c perl-io-prompt r-biom-utils
c-ares perl-io-sessiondata r-biomart
c-blosc perl-io-socket-ssl r-biomartr
c-blosc2 perl-io-string r-biomformat
c-lime perl-io-stringy r-biostrings
ca-certificates-mozilla perl-io-tty r-biovizbase
cabana perl-ipc-run r-bit
cachefilesd perl-json r-bit64
caffe perl-libwww-perl r-bitops
cairo perl-libxml-perl r-blavaan
cairomm perl-list-moreutils r-blob
caliper perl-list-moreutils-xs r-blockmodeling
callflow perl-log-log4perl r-bmp
callpath perl-logger-simple r-bookdown
camellia perl-lwp-mediatypes r-boot
camp perl-lwp-protocol-https r-boruta
camx perl-mailtools r-brew
canal perl-math-bezier r-bridgesampling
candle-benchmarks perl-math-cdf r-brio
cantera perl-math-cephes r-brms
canu perl-math-matrixreal r-brobdingnag
cap3 perl-math-round r-broom
capnproto perl-math-vecstat r-bsgenome
capstone perl-mce r-bsgenome-hsapiens-ucsc-hg19
cardioid perl-module-build r-bsseq
care perl-module-build-tiny r-bumphunter
casacore perl-module-implementation r-c50
cask perl-module-runtime r-ca
casper perl-module-runtime-conflicts r-cairo
cassandra perl-moose r-callr
catalyst perl-mozilla-ca r-car
catch2 perl-mro-compat r-caracas
cbc perl-namespace-clean r-cardata
cbench perl-net-http r-caret
cbflib perl-net-scp-expect r-caretensemble
cblas perl-net-ssleay r-caroline
cbtf perl-number-format r-category
cbtf-argonavis perl-object-insideout r-catools
cbtf-argonavis-gui perl-package-deprecationmanager r-cdcfluview
cbtf-krell perl-package-stash r-cellranger
cbtf-lanl perl-package-stash-xs r-champ
cc65 perl-padwalker r-champdata
ccache perl-parallel-forkmanager r-checkmate
ccfits perl-params-util r-checkpoint
ccls perl-params-validate r-chemometrics
ccs-qcd perl-parse-recdescent r-chipseq
cctools perl-path-tiny r-chron
cdbfasta perl-pdf-api2 r-circlize
cdd perl-pegex r-circstats
cddlib perl-perl-unsafe-signals r-class
cdecimal perl-perl-version r-classint
cdhit perl-perl4-corelibs r-cli
cdo perl-perl6-slurp r-clipr
ceed perl-perlio-gzip r-clisymbols
cereal perl-perlio-utf8-strict r-clue
ceres-solver perl-readonly r-cluster
cfitsio perl-regexp-common r-clustergeneration
cgal perl-scalar-list-utils r-clusterprofiler
cgdb perl-scalar-util-numeric r-cner
cgdcbxd perl-set-intervaltree r-coda
cget perl-set-intspan r-codetools
cgl perl-set-scalar r-codex
cgm perl-soap-lite r-coin
cgns perl-star-fusion r-colorspace
chai perl-statistics-basic r-colourpicker
changa perl-statistics-descriptive r-combinat
channelflow perl-statistics-pca r-commonmark
chapel perl-sub-exporter r-complexheatmap
chaplin perl-sub-exporter-progressive r-compositions
charliecloud perl-sub-identify r-compquadform
charmpp perl-sub-install r-condop
chatterbug perl-sub-name r-conquer
check perl-sub-uplevel r-construct
chgcentre perl-svg r-convevol
chill perl-swissknife r-copula
chlorop perl-sys-sigaction r-corhmm
chombo perl-task-weaken r-corpcor
chrony perl-term-readline-gnu r-corrplot
chrpath perl-termreadkey r-countrycode
cinch perl-test-cleannamespaces r-covr
circos perl-test-deep r-cowplot
cistem perl-test-differences r-cpp11
citcoms perl-test-exception r-crayon
cityhash perl-test-fatal r-credentials
ck perl-test-memory-cycle r-crosstalk
clamav perl-test-more r-crul
clamr perl-test-most r-ctc
clapack perl-test-needs r-cubature
clara perl-test-output r-cubist
claw perl-test-requires r-curl
cleaveland4 perl-test-requiresinternet r-dada2
cleverleaf perl-test-warn r-data-table
clfft perl-test-warnings r-dbi
clhep perl-text-csv r-dbplyr
cli11 perl-text-diff r-debugme
clinfo perl-text-format r-decipher
clingo perl-text-simpletable r-delayedarray
clingo-bootstrap perl-text-soundex r-delayedmatrixstats
cln perl-text-unidecode r-deldir
cloc perl-thread-queue r-dendextend
cloog perl-threads r-deoptim
cloverleaf perl-time-hires r-deoptimr
cloverleaf3d perl-time-piece r-deriv
clp perl-timedate r-desc
clustal-omega perl-tk r-deseq
clustalw perl-try-tiny r-deseq2
cmake perl-uri r-desolve
cmaq perl-want r-devtools
cmark perl-www-robotrules r-dexseq
cminpack perl-xml-dom r-diagrammer
cmocka perl-xml-dom-xpath r-dicekriging
cmockery perl-xml-filter-buffertext r-dichromat
cmor perl-xml-libxml r-diffobj
cnmem perl-xml-libxslt r-diffusionmap
cnpy perl-xml-namespacesupport r-digest
cntk perl-xml-parser r-diptest
cntk1bitsgd perl-xml-parser-lite r-dirichletmultinomial
cnvnator perl-xml-quote r-dismo
codar-cheetah perl-xml-regexp r-diversitree
code-server perl-xml-sax r-dmrcate
codec2 perl-xml-sax-base r-dnacopy
codes perl-xml-sax-writer r-do-db
coevp perl-xml-simple r-domc
cohmm perl-xml-twig r-doparallel
coin3d perl-xml-writer r-dorng
coinhsl perl-xml-xpathengine r-dose
coinutils perl-yaml r-dosnow
collectd perl-yaml-libyaml r-dotcall64
collier pestpp r-downloader
colm petsc r-dplyr
colordiff pexsi r-dqrng
comd pfapack r-dss
comgr pfft r-dt
commons-lang pflask r-dtw
commons-lang3 pflotran r-dygraphs
commons-logging pfunit r-dynamictreecut
compadre pgdspider r-e1071
compiz pgi r-earth
compositeproto pgplot r-ecp
conda4aarch64 phantompeakqualtools r-edger
conduit phast r-effects
connect-proxy phasta r-ellipse
conserver phist r-ellipsis
console-bridge phoenix r-emmeans
constype photos r-emmli
consul php r-energy
converge phrap-crossmatch-swat r-enrichplot
cool phred r-ensembldb
coral phylip r-envstats
corenlp phylobayesmpi r-ergm
coreutils phyluce r-estimability
corset picard r-europepmc
cosbench picsar r-evaluate
cosma picsarlite r-evd
cosmoflow-benchmark pidx r-exactextractr
cosmomc pig r-exomecopy
cosp2 pigz r-exomedepth
cotter pilon r-experimenthub
couchdb pindel r-expint
cowsay pinentry r-expm
cp2k pinfo r-factoextra
cpio pipework r-factominer
cpmd piranha r-fansi
cpp-httplib pism r-farver
cppad pixman r-fastcluster
cppcheck pixz r-fastdigest
cppgsl pkg-config r-fastica
cpprestsdk pkgconf r-fastmap
cppunit pktools r-fastmatch
cppzmq planck-likelihood r-fastmatrix
cpu-features plasma r-fdb-infiniummethylation-hg18
cpuinfo platypus r-fdb-infiniummethylation-hg19
cqrlib plink r-ff
cquery plink-ng r-fftwtools
cracklib plplot r-fgsea
cradl plumed r-fields
cram ply r-filehash
cray-fftw pmdk r-findpython
cray-libsci pmemkv r-fit-models
cray-mpich pmerge r-fitdistrplus
creduce pmgr-collective r-flashclust
cromwell pmix r-flexclust
cromwell-womtool pmlib r-flexmix
cronie pnfft r-fnn
cryptopp pngquant r-forcats
cryptsetup pngwriter r-foreach
csa-c pnmpi r-forecast
cscope poamsa r-foreign
csdp pocl r-formatr
ctffind podio r-formula
ctpl poke r-fpc
ctre polymake r-fpcompare
cub poplddecay r-fracdiff
cube poppler r-fs
cube-blade poppler-data r-futile-logger
cubelib popt r-futile-options
cubew porta r-future
cubist portage r-future-apply
cuda portcullis r-gamlss
cuda-memtest postgis r-gamlss-data
cudnn postgresql r-gamlss-dist
cufflinks povray r-gamm4
cunit powerapi r-gbm
cups powertop r-gbrd
curl ppl r-gcrma
cusz pplacer r-gdalutils
cvector ppopen-appl-amr-fdm r-gdata
cvs ppopen-appl-bem r-gdsfmt
cxx ppopen-appl-bem-at r-geiger
cxxopts ppopen-appl-dem-util r-genefilter
cxxtest ppopen-appl-fdm r-genelendatabase
cyrus-sasl ppopen-appl-fdm-at r-genemeta
czmq ppopen-appl-fem r-geneplotter
dakota ppopen-appl-fvm r-generics
daligner ppopen-at r-genetics
dalton ppopen-math-mp r-genie3
damageproto ppopen-math-vis r-genomeinfodb
damaris prank r-genomeinfodbdata
damselfly precice r-genomicalignments
darshan-runtime predixy r-genomicfeatures
darshan-util premake-core r-genomicranges
dash presentproto r-gensa
datamash preseq r-geomorph
dataspaces presto r-geonames
datatransferkit price r-geoquery
date primer3 r-geor
dateutils prinseq-lite r-geosphere
davix printproto r-gert
dbcsr prism r-getopt
dbow2 prmon r-getoptlong
dbus prng r-ggally
dbus-glib probconsrna r-ggbeeswarm
dbxtool procenv r-ggbio
dcap process-in-process r-ggdendro
dcmtk procps r-ggforce
dd4hep procps-ng r-ggjoy
ddd prodigal r-ggmap
dealii professor r-ggplot2
dealii-parameter-gui profugusmc r-ggplotify
debbuild proj r-ggpubr
debugedit prokka r-ggraph
decentralized-internet prometheus r-ggrepel
deconseq-standalone protobuf r-ggridges
dejagnu protobuf-c r-ggsci
delly2 proxymngr r-ggsignif
delphes prrte r-ggthemes
delta pruners-ninja r-ggvis
denovogear ps-lite r-gh
dftbplus psi4 r-gistr
dftd3-lib psimd r-git2r
dftd4 pslib r-gitcreds
dftfe psm r-glimma
dhpmm-f psmc r-glmnet
dhtest pstreams r-globaloptions
dia pthreadpool r-globals
dialign pugixml r-globaltest
dialign-tx pulseaudio r-glue
diamond pumi r-gmodels
diffmark pv r-gmp
diffsplice pvm r-go-db
diffutils pxz r-goftest
dihydrogen py-3to2 r-gofuncr
dimemas py-4suite-xml r-googlevis
ding-libs py-abipy r-goplot
dire py-absl-py r-gosemsim
direnv py-accimage r-goseq
discovar py-acme-tiny r-gostats
discovardenovo py-adal r-gower
disktype py-adb-enhanced r-gplots
dislin py-addict r-graph
distcc py-adios r-graphlayouts
diy py-advancedhtmlparser r-grbase
dlib py-aenum r-gridbase
dlpack py-affine r-gridextra
dmd py-agate r-gridgraphics
dmidecode py-agate-dbf r-gsa
dmlc-core py-agate-excel r-gsalib
dmtcp py-agate-sql r-gseabase
dmxproto py-aiobotocore r-gsl
dnsmap py-aiodns r-gsodr
dnsmasq py-aiofiles r-gss
dnstop py-aiohttp r-gstat
dnstracer py-aiohttp-cors r-gsubfn
docbook-xml py-aioitertools r-gtable
docbook-xsl py-aioredis r-gtools
dock py-alabaster r-gtrellis
dos2unix py-alembic r-gviz
dosfstools py-altgraph r-gwmodel
dotconf py-amqp r-haven
dotnet-core-sdk py-angel r-hdf5array
double-conversion py-aniso8601 r-hdf5r
doxygen py-annexremote r-hexbin
dpdk py-ansible r-hh
draco py-antlr4-python3-runtime r-highr
dracut py-anuga r-hmisc
dramsim2 py-anyio r-hms
dramsim3 py-apache-beam r-hoardr
dray py-apache-libcloud r-htmltable
dri2proto py-apex r-htmltools
dri3proto py-apipkg r-htmlwidgets
drill py-appdirs r-httpcode
dropwatch py-applicationinsights r-httpuv
druid py-appnope r-httr
ds py-apptools r-hwriter
dsdp py-apscheduler r-hypergraph
dsqss py-arcgis r-ica
dsrc py-archspec r-igraph
dssp py-argcomplete r-illumina450probevariants-db
dtc py-argh r-illuminahumanmethylation450kanno-ilmn12-hg19
dtcmp py-argon2-cffi r-illuminahumanmethylation450kmanifest
dtf py-argparse r-illuminahumanmethylationepicanno-ilm10b4-hg19
duperemove py-args r-illuminahumanmethylationepicmanifest
dyninst py-arrow r-illuminaio
dysco py-arviz r-imager
e2fsprogs py-asciitree r-impute
ea-utils py-asdf r-influencer
eagle py-ase r-ini
earlyoom py-asgiref r-inline
easybuild py-asn1crypto r-insight
ebms py-aspy-yaml r-interactivedisplaybase
ecbuild py-asserts r-intervals
eccodes py-asteval r-inum
ecdsautils py-astor r-ipred
ecflow py-astpretty r-iranges
eckit py-astroid r-irdisplay
eclipse-gcj-parser py-astropy r-irkernel
ecos py-astropy-healpix r-irlba
ecp-data-vis-sdk py-astropy-helpers r-isdparser
ecp-proxy-apps py-astunparse r-iso
ed py-async-generator r-isoband
editline py-async-timeout r-isva
editres py-asyncio r-iterators
edm4hep py-atomicwrites r-jade
eem py-atpublic r-janitor
efivar py-atropos r-jaspar2018
eigen py-attrs r-jomo
eigenexa py-audioread r-jpeg
elasticsearch py-autograd r-jsonlite
elemental py-autograd-gamma r-kegg-db
elfutils py-autopep8 r-kegggraph
elk py-auxlib r-keggrest
elmerfem py-avro r-kernlab
elpa py-avro-json-serializer r-kernsmooth
elsd py-avro-python3 r-kknn
elsdc py-awesome-slugify r-knitr
elsi py-awkward r-kpmt
emacs py-awkward0 r-ks
ember py-awkward1 r-labeling
emboss py-azote r-lambda-r
embree py-azure-batch r-laplacesdemon
enca py-azure-cli r-lars
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energyplus py-azure-cli-core r-lattice
entrezdirect py-azure-cli-nspkg r-latticeextra
entt py-azure-cli-telemetry r-lava
environment-modules py-azure-common r-lavaan
enzo py-azure-core r-lazyeval
enzyme py-azure-cosmos r-ldheatmap
eospac py-azure-datalake-store r-leafem
eq-r py-azure-functions-devops-build r-leaflet
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erfa py-azure-identity r-leafpop
erlang py-azure-keyvault r-leaps
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erne py-azure-keyvault-keys r-leiden
es-shell py-azure-keyvault-nspkg r-lfe
esmf py-azure-keyvault-secrets r-lhs
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essl py-azure-mgmt-advisor r-lifecycle
etcd py-azure-mgmt-apimanagement r-limma
ethminer py-azure-mgmt-appconfiguration r-limsolve
ethtool py-azure-mgmt-applicationinsights r-listenv
etsf-io py-azure-mgmt-authorization r-lme4
evemu py-azure-mgmt-batch r-lmertest
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everytrace-example py-azure-mgmt-billing r-lobstr
evieext py-azure-mgmt-botservice r-locfit
evtgen py-azure-mgmt-cdn r-log4r
exa py-azure-mgmt-cognitiveservices r-loo
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exago py-azure-mgmt-consumption r-lsei
examinimd py-azure-mgmt-containerinstance r-lubridate
examl py-azure-mgmt-containerregistry r-lumi
exampm py-azure-mgmt-containerservice r-lwgeom
exasp2 py-azure-mgmt-core r-magic
exciting py-azure-mgmt-cosmosdb r-magick
exempi py-azure-mgmt-datalake-analytics r-magrittr
exiv2 py-azure-mgmt-datalake-store r-makecdfenv
exmcutils py-azure-mgmt-datamigration r-maldiquant
exodusii py-azure-mgmt-deploymentmanager r-manipulatewidget
exonerate py-azure-mgmt-devtestlabs r-mapplots
exonerate-gff3 py-azure-mgmt-dns r-mapproj
expat py-azure-mgmt-eventgrid r-maps
expect py-azure-mgmt-eventhub r-maptools
express py-azure-mgmt-hdinsight r-mapview
extrae py-azure-mgmt-imagebuilder r-markdown
exuberant-ctags py-azure-mgmt-iotcentral r-marray
eztrace py-azure-mgmt-iothub r-mass
f2c py-azure-mgmt-iothubprovisioningservices r-mathjaxr
f77-zmq py-azure-mgmt-keyvault r-matlab
f90cache py-azure-mgmt-kusto r-matr
fabtests py-azure-mgmt-loganalytics r-matrix
fairlogger py-azure-mgmt-managedservices r-matrixgenerics
faiss py-azure-mgmt-managementgroups r-matrixmodels
fakechroot py-azure-mgmt-maps r-matrixstats
fakexrandr py-azure-mgmt-marketplaceordering r-mclust
falcon py-azure-mgmt-media r-mcmc
fann py-azure-mgmt-monitor r-mcmcglmm
faodel py-azure-mgmt-msi r-mcmcpack
fasd py-azure-mgmt-netapp r-mco
fast-global-file-status py-azure-mgmt-network r-mda
fasta py-azure-mgmt-nspkg r-memoise
fastdb py-azure-mgmt-policyinsights r-memuse
fastdfs py-azure-mgmt-privatedns r-mergemaid
fastjar py-azure-mgmt-rdbms r-metap
fastjet py-azure-mgmt-recoveryservices r-methylumi
fastjson py-azure-mgmt-recoveryservicesbackup r-mgcv
fastmath py-azure-mgmt-redhatopenshift r-mgraster
fastme py-azure-mgmt-redis r-mice
fastp py-azure-mgmt-relay r-microbenchmark
fastphase py-azure-mgmt-reservations r-mime
fastq-screen py-azure-mgmt-resource r-minfi
fastqc py-azure-mgmt-search r-miniui
fastqvalidator py-azure-mgmt-security r-minqa
fasttext py-azure-mgmt-servicebus r-misc3d
fasttransforms py-azure-mgmt-servicefabric r-missmethyl
fasttree py-azure-mgmt-signalr r-mitml
fastx-toolkit py-azure-mgmt-sql r-mitools
faust py-azure-mgmt-sqlvirtualmachine r-mixtools
fbgemm py-azure-mgmt-storage r-mlbench
fca py-azure-mgmt-trafficmanager r-mlinterfaces
fcgi py-azure-mgmt-web r-mlr
fd-find py-azure-multiapi-storage r-mlrmbo
fdb py-azure-nspkg r-mmwrweek
fdupes py-azure-storage-common r-mnormt
feh py-azure-storage-nspkg r-mockery
fenics py-azureml-automl-core r-modelmetrics
fenics-basix py-azureml-core r-modelr
fenics-dolfinx py-azureml-dataprep r-modeltools
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ferret py-azureml-pipeline-core r-multitaper
ffb py-azureml-pipeline-steps r-multtest
ffmpeg py-azureml-sdk r-munsell
ffr py-azureml-telemetry r-mutoss
ffsb py-azureml-train r-mvtnorm
fftw py-azureml-train-automl-client r-mzid
fgsl py-azureml-train-core r-mzr
fides py-azureml-train-restclients-hyperdrive r-nada
figlet py-babel r-nanotime
figtree py-backcall r-ncbit
file py-backports-abc r-ncdf4
filebench py-backports-functools-lru-cache r-network
filo py-backports-lzma r-networkd3
filtlong py-backports-shutil-get-terminal-size r-nimble
fimpute py-backports-ssl-match-hostname r-nleqslv
find-circ py-backports-tempfile r-nlme
findbugs py-backports-weakref r-nloptr
findutils py-bandit r-nmf
fio py-basemap r-nmof
fipscheck py-bash-kernel r-nnet
fish py-basis-set-exchange r-nnls
fixesproto py-batchspawner r-nonnest2
fj py-bayesian-optimization r-nor1mix
fjcontrib py-bcbio-gff r-nortest
fl py-bcolz r-np
flac py-bcrypt r-npsurv
flann py-beancount r-numderiv
flash py-beautifulsoup4 r-oligoclasses
flashdimmsim py-beniget r-openssl
flatbuffers py-bids-validator r-openxlsx
flatcc py-bigfloat r-optimx
flcl py-billiard r-optparse
flecsale py-binaryornot r-ordinal
flecsi py-bintrees r-org-hs-eg-db
flecsph py-binwalk r-organismdbi
flex py-biom-format r-packrat
flexi py-biomine r-pacman
flexiblas py-biopandas r-paleotree
flibcpp py-biopython r-pamr
flink py-bitarray r-pan
flint py-bitstring r-parallelly
flit py-black r-parallelmap
fltk py-bleach r-paramhelpers
flume py-blessed r-party
flux-core py-blessings r-partykit
flux-sched py-blinker r-patchwork
fluxbox py-blis r-pathview
fmt py-blosc r-pbapply
foam-extend py-bmap-tools r-pbdzmq
folly py-bokeh r-pbivnorm
font-util py-boltons r-pbkrtest
fontcacheproto py-boom-boot-manager r-pcamethods
fontconfig py-boto r-pcapp
fontsproto py-boto3 r-pegas
fonttosfnt py-botocore r-permute
form py-bottle r-pfam-db
formetis py-bottleneck r-phangorn
fortran py-breakseq2 r-phantompeakqualtools
fortrilinos py-breathe r-pheatmap
foundationdb py-brian r-philentropy
fox py-brian2 r-phylobase
fp16 py-brotlipy r-phyloseq
fpc py-bsddb3 r-phylostratr
fping py-bx-python r-phytools
fplll py-bz2file r-picante
fpocket py-cached-property r-pillar
fqtrim py-cachetools r-pinfsc50
fr-hit py-cairocffi r-pixmap
fraggenescan py-cantoolz r-pkgbuild
freebayes py-cartopy r-pkgconfig
freeglut py-catalogue r-pkgload
freeimage py-catkin-pkg r-pkgmaker
freeipmi py-cclib r-plogr
freetype py-cdat-lite r-plot3d
freexl py-cdo r-plotly
fribidi py-cdsapi r-plotmo
frontier-client py-cekit r-plotrix
frontistr py-celery r-pls
fseq py-certifi r-plyr
fsl py-certipy r-pmcmr
fslsfonts py-cf-units r-png
fstobdf py-cffi r-polspline
fstrack py-cfgrib r-polyclip
ftgl py-cfgv r-polynom
ftk py-cftime r-pool
ftobjectlibrary py-chai r-popgenome
fujitsu-fftw py-chainer r-popvar
fujitsu-mpi py-chainmap r-powerlaw
fujitsu-ssl2 py-chalice r-prabclus
fullock py-chardet r-pracma
funhpc py-charm4py r-praise
fuse-overlayfs py-checkm-genome r-preprocesscore
fxdiv py-cheetah r-prettydoc
fyba py-cheetah3 r-prettyunits
fzf py-cheroot r-proc
g2o py-cherrypy r-processx
g4abla py-chronyk r-prodlim
g4emlow py-ci-info r-progress
g4ensdfstate py-cinema-lib r-proj
g4incl py-cinemasci r-proj4
g4ndl py-citeproc-py r-projpred
g4neutronxs py-click r-promises
g4particlexs py-click-didyoumean r-protgenerics
g4photonevaporation py-click-plugins r-proto
g4pii py-click-repl r-proxy
g4radioactivedecay py-cligj r-pryr
g4realsurface py-clint r-ps
g4saiddata py-clipboard r-pscbs
g4tendl py-cloudpickle r-pspline
gamess-ri-mp2-miniapp py-clustershell r-psych
gams py-cmake r-ptw
ganglia py-cmake-format r-purrr
gapbs py-cmocean r-qs
gapcloser py-cnvkit r-qtl
gapfiller py-coapthon3 r-quadprog
gasnet py-codecov r-quantmod
gate py-cogent r-quantreg
gatepet2stir py-coilmq r-quantro
gatetools py-colorama r-quickplot
gatk py-colored r-qvalue
gaudi py-colored-traceback r-r-cache
gaussian py-coloredlogs r-r-methodss3
gaussian-src py-colorful r-r-oo
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gawk py-colormath r-r6
gblocks py-colorpy r-randomfields
gcc py-colorspacious r-randomfieldsutils
gccmakedep py-commonmark r-randomforest
gccxml py-configargparse r-randomglm
gchp py-configobj r-ranger
gconf py-configparser r-rann
gcta py-contextily r-rapiserialize
gdal py-contextlib2 r-rappdirs
gdb py-contextvars r-raster
gdbm py-convertdate r-rbgl
gdk-pixbuf py-cookiecutter r-rbibutils
gdl py-cookies r-rbokeh
gdrcopy py-counter r-rcmdcheck
geant4 py-cov-core r-rcolorbrewer
geant4-data py-coverage r-rcpp
geant4-vmc py-coveralls r-rcppannoy
gearshifft py-cppheaderparser r-rcpparmadillo
gemmlowp py-crcmod r-rcppblaze
genemark-et py-crispresso r-rcppcctz
genesis py-crossmap r-rcppcnpy
genfit py-cryptography r-rcppdate
gengeo py-cssselect r-rcppeigen
gengetopt py-csvkit r-rcpphnsw
genie py-cudf r-rcppparallel
genomefinisher py-cuml r-rcppprogress
genometools py-cupy r-rcurl
genomeworks py-current r-rda
genrich py-cutadapt r-rdpack
geode py-cvxopt r-readbitmap
geoip py-cvxpy r-readr
geoip-api-c py-cycler r-readxl
geopm py-cymem r-recipes
geos py-cyordereddict r-registry
gettext py-cython r-rematch
gflags py-cython-bbox r-rematch2
ghost py-cyvcf2 r-remotes
ghostscript py-d2to1 r-renv
ghostscript-fonts py-dadi r-reordercluster
giblib py-dask r-reportingtools
giflib py-dask-glm r-repr
ginac py-dask-ml r-reprex
ginkgo py-dask-sphinx-theme r-reproducible
giraph py-dask-xgboost r-require
git py-dataclasses r-reshape
git-annex py-datacube r-reshape2
git-fat-git py-datasets r-reticulate
git-imerge py-dateparser r-rex
git-lfs py-dbf r-rferns
gitconddb py-dbfread r-rgdal
gl2ps py-deap r-rgenoud
glew py-decorator r-rgeos
glfmultiples py-deeptools r-rgexf
glfw py-deeptoolsintervals r-rgl
glib py-defusedxml r-rgooglemaps
glib-networking py-dendropy r-rgraphviz
glibmm py-deprecated r-rhdf5
glimmer py-deprecation r-rhdf5filters
glm py-descartes r-rhdf5lib
global py-devlib r-rhmmer
globalarrays py-dgl r-rhtslib
glog py-dictdiffer r-rinside
gloo py-dill r-rio
glpk py-discover r-rjags
glproto py-diskcache r-rjava
glusterfs py-distributed r-rjson
glvis py-distro r-rjsonio
gmake py-django r-rlang
gmap-gsnap py-dlcpar r-rle
gmime py-dm-tree r-rmariadb
gmodel py-dnaio r-rmarkdown
gmp py-docker r-rminer
gmsh py-dockerpy-creds r-rmpfr
gmt py-docopt r-rmpi
gmtsar py-docutils r-rms
gnat py-docutils-stubs r-rmutil
gnome-common py-dominate r-rmysql
gnupg py-dotnetcore2 r-rnaseqmap
gnuplot py-doxypy r-rncl
gnuradio py-doxypypy r-rnexml
gnutls py-dp-gp-cluster r-rngtools
go py-dpath r-rnoaa
go-bootstrap py-drmaa r-robust
go-md2man py-dryscrape r-robustbase
gobject-introspection py-duecredit r-roc
goblin-hmc-sim py-dulwich r-rocr
googletest py-dvc r-rodbc
gosam-contrib py-dxchange r-rook
gotcha py-dxfile r-rots
gource py-earthengine-api r-roxygen2
gpdb py-easybuild-easyblocks r-rpart
gperf py-easybuild-easyconfigs r-rpart-plot
gperftools py-easybuild-framework r-rpmm
gpgme py-eccodes r-rpostgres
gpi-2 py-ecdsa r-rpostgresql
gplates py-ecos r-rprojroot
gprolog py-edffile r-rrblup
gpu-burn py-editdistance r-rrcov
gqrx py-efficientnet-pytorch r-rrpp
gr-osmosdr py-eg r-rsamtools
grabix py-elasticsearch r-rsconnect
grace py-elephant r-rsnns
grackle py-emcee r-rsolnp
gradle py-empy r-rspectra
grads py-entrypoints r-rsqlite
grafana py-enum34 r-rstan
grandr py-envisage r-rstantools
graph500 py-ephem r-rstatix
graphblast py-epydoc r-rstudioapi
graphicsmagick py-espresso r-rsvd
graphite2 py-espressopp r-rtracklayer
graphlib py-et-xmlfile r-rtsne
graphmap py-etelemetry r-runit
graphviz py-eventlet r-runjags
grass py-execnet r-ruv
graylog2-server py-exifread r-rvcheck
grep py-exodus-bundler r-rversions
grib-api py-extension-helpers r-rvest
gridlab-d py-extras r-rzmq
grnboost py-ez-setup r-s2
groff py-f90wrap r-s4vectors
gromacs py-fabric r-samr
grpc py-falcon r-sandwich
gsettings-desktop-schemas py-fallocate r-satellite
gsl py-fastaindex r-scales
gslib py-fastavro r-scater
gtk-doc py-fastcache r-scattermore
gtkmm py-fastcluster r-scatterpie
gtkorvo-atl py-fastdtw r-scatterplot3d
gtkorvo-cercs-env py-fasteners r-scrime
gtkorvo-dill py-fastrlock r-sctransform
gtkorvo-enet py-faststructure r-scuttle
gtkplus py-fava r-sdmtools
gtksourceview py-fenics-basix r-segmented
gts py-fenics-dijitso r-selectr
guacamole-client py-fenics-dolfinx r-seqinr
guacamole-server py-fenics-ffc r-seqlogo
guidance py-fenics-ffcx r-servr
guile py-fenics-fiat r-sessioninfo
gunrock py-fenics-instant r-seurat
gurobi py-fenics-ufl r-sf
gzip py-filelock r-sfsmisc
h2database py-filemagic r-shadowtext
h5cpp py-filterpy r-shape
h5hut py-findlibs r-shiny
h5part py-fiona r-shinydashboard
h5utils py-fiscalyear r-shinyfiles
h5z-zfp py-fisher r-shinyjs
hacckernels py-fits-tools r-shinystan
hackrf-host py-fixtures r-shinythemes
hadoop py-flake8 r-shortread
hal py-flake8-import-order r-siggenes
halc py-flake8-polyfill r-simpleaffy
half py-flask r-singlecellexperiment
hama py-flask-babel r-sitmo
hapcut2 py-flask-compress r-sm
hapdip py-flask-cors r-smoof
haploview py-flask-restful r-sn
haproxy py-flask-socketio r-snakecase
hardlink py-flatten-dict r-snow
harfbuzz py-flexmock r-snowfall
harminv py-flexx r-snprelate
hashcat py-flufl-lock r-snpstats
haveged py-flye r-som
hazelcast py-fn-py r-somaticsignatures
hbase py-fortran-language-server r-sourcetools
hbm-dramsim2 py-fortranformat r-sp
hc py-fparser r-spacetime
hcol py-fprettify r-spades
hcoll py-freezegun r-spades-addins
hdf py-fsspec r-spades-core
hdf-eos2 py-ftfy r-spades-tools
hdf-eos5 py-funcsigs r-spam
hdf5 py-functools32 r-sparsem
hdf5-blosc py-funcy r-sparsematrixstats
hdfview py-fusepy r-spatial
healpix-cxx py-future r-spatialeco
heaptrack py-futures r-spatialpack
heffte py-fuzzywuzzy r-spatialreg
helics py-fypp r-spatstat
help2man py-gast r-spatstat-data
henson py-gcovr r-spatstat-utils
hepmc py-gcs-oauth2-boto-plugin r-spdata
hepmc3 py-gdbgui r-spdep
hepmcanalysis py-gdc-client r-speedglm
heppdt py-gee-asset-manager r-spem
heputils py-geeadd r-splancs
hercules py-geeup r-splitstackshape
herwig3 py-gemini r-sqldf
herwigpp py-genders r-squarem
hevea py-geneimpacts r-squash
hibench py-genshi r-sseq
hic-pro py-gensim r-stabledist
hicolor-icon-theme py-geoalchemy2 r-stanheaders
highfive py-geocube r-stargazer
highwayhash py-geographiclib r-statmod
hiop py-geopandas r-statnet-common
hip py-geoplot r-stringfish
hip-rocclr py-geopy r-stringi
hipace py-gevent r-stringr
hipblas py-gf256 r-strucchange
hipcub py-gffutils r-subplex
hipfft py-git-review r-summarizedexperiment
hipfort py-gitdb r-suppdists
hipify-clang py-gitpython r-survey
hipsparse py-gluoncv r-survival
hipsycl py-gnuplot r-sva
hiredis py-goatools r-svglite
hisat2 py-google r-sys
hisea py-google-api-core r-systemfonts
hive py-google-api-python-client r-tarifx
hivex py-google-apitools r-taxizedb
hmmer py-google-auth r-tclust
hohqmesh py-google-auth-httplib2 r-teachingdemos
homer py-google-auth-oauthlib r-tensor
hoomd-blue py-google-cloud-core r-tensora
hotspot py-google-cloud-storage r-tester
hpcc py-google-pasta r-testit
hpccg py-google-resumable-media r-testthat
hpcg py-googleapis-common-protos r-tfbstools
hpctoolkit py-googledrivedownloader r-tfisher
hpcviewer py-gosam r-tfmpvalue
hpcx-mpi py-gpaw r-th-data
hpgmg py-gpustat r-threejs
hping py-gputil r-tibble
hpl py-gpy r-tictoc
hpx py-gpytorch r-tidycensus
hpx5 py-gql r-tidygraph
hsa-rocr-dev py-grandalf r-tidyr
hsakmt py-graphql-core r-tidyselect
hsakmt-roct py-graphviz r-tidyverse
hsf-cmaketools py-greenlet r-tiff
hssp py-grequests r-tigris
hstr py-griddataformats r-timedate
htop py-grpcio r-tinytex
htslib py-gsd r-tmixclust
http-get py-gsi r-tmvnsim
http-load py-gsutil r-topgo
http-parser py-guidata r-triebeard
http-ping py-guiqwt r-trimcluster
http-post py-gym r-truncdist
httpd py-h11 r-truncnorm
httperf py-h2 r-trust
httpie py-h5glance r-tseries
httping py-h5netcdf r-tsne
httpress py-h5py r-ttr
hub py-h5sh r-tweenr
hudi py-hacking r-txdb-hsapiens-ucsc-hg18-knowngene
hugo py-haphpipe r-txdb-hsapiens-ucsc-hg19-knowngene
hunspell py-hatchet r-tximport
hw-probe py-hdbscan r-tximportdata
hwdata py-hdfs r-ucminf
hwloc py-healpy r-udunits2
hybpiper py-heapdict r-units
hybrid-lambda py-hepdata-validator r-upsetr
hybridsim py-hepunits r-urca
hydra py-hieroglyph r-urltools
hydrogen py-hiredis r-usethis
hyperscan py-holland-backup r-utf8
hyphen py-horovod r-uuid
hyphy py-hpack r-uwot
hypre py-hpcbench r-v8
i3 py-hpccm r-variantannotation
ibm-databroker py-hstspreload r-varselrf
ibm-java py-html2text r-vcd
ibmisc py-html5lib r-vcfr
icarus py-htmlgen r-vctrs
iceauth py-htseq r-vegan
icedtea py-httpbin r-vfs
icet py-httpcore r-vgam
ico py-httplib2 r-vioplot
icu4c py-httpretty r-vipor
id3lib py-httptools r-viridis
idba py-httpx r-viridislite
idl py-huggingface-hub r-visnetwork
iegenlib py-humanfriendly r-vsn
ignite py-humanize r-waldo
igprof py-hvac r-watermelon
igraph py-hyperframe r-webshot
igv py-hyperopt r-wgcna
igvtools py-hypothesis r-whisker
ike-scan py-ibm-cloud-sdk-core r-withr
ilmbase py-ibm-watson r-wk
ima-evm-utils py-ics r-xde
imagemagick py-identify r-xfun
imake py-idna r-xgboost
imlib2 py-idna-ssl r-xlconnect
imp py-illumina-utils r-xlconnectjars
impute2 py-ilmbase r-xlsx
infernal py-imageio r-xlsxjars
influxdb py-imageio-ffmpeg r-xmapbridge
iniparser py-imagesize r-xml
inputproto py-iminuit r-xml2
intel py-immutables r-xnomial
intel-daal py-importlib r-xopen
intel-gpu-tools py-importlib-metadata r-xtable
intel-ipp py-importlib-resources r-xts
intel-llvm py-inference-schema r-xvector
intel-mkl py-inheritance r-yaimpute
intel-mpi py-iniconfig r-yaml
intel-mpi-benchmarks py-iniparse r-yapsa
intel-oneapi-ccl py-intel-openmp r-yaqcaffy
intel-oneapi-compilers py-intervaltree r-yarn
intel-oneapi-dal py-invoke r-zcompositions
intel-oneapi-dnn py-iocapture r-zeallot
intel-oneapi-dpl py-ipaddress r-zip
intel-oneapi-ipp py-ipdb r-zlibbioc
intel-oneapi-ippcp py-ipykernel r-zoo
intel-oneapi-mkl py-ipyparallel r3d
intel-oneapi-mpi py-ipython rabbitmq
intel-oneapi-tbb py-ipython-cluster-helper racon
intel-oneapi-vpl py-ipython-genutils raft
intel-parallel-studio py-ipywidgets ragel
intel-pin py-irpf90 raja
intel-tbb py-iso8601 ramulator
intel-xed py-isodate randfold
interproscan py-isort random123
intltool py-itk randrproto
ioapi py-itsdangerous range-v3
ior py-jaraco-functools rankstr
iozone py-javaproperties rapidjson
ipcalc py-jdatetime raptor2
iperf2 py-jdcal rasdaemon
iperf3 py-jedi rasqal
ipopt py-jeepney ravel
iproute2 py-jellyfish raxml
iptraf-ng py-jinja2 raxml-ng
iq-tree py-jinja2-time ray
irep py-jmespath rccl
isaac py-joblib rclone
isaac-server py-jplephem rdc
isc-dhcp py-jprops rdkit
isescan py-jpype1 rdma-core
isl py-jsmin rdp-classifier
iso-codes py-json-get rdptools
ispc py-json5 re2
istio py-jsondiff re2c
itensor py-jsonpatch readfq
itk py-jsonpath-ng readline
itstool py-jsonpickle recon
itsx py-jsonpointer recorder
iwyu py-jsonref recordproto
jackcess py-jsonschema redis
jafka py-junit-xml reditools
jags py-jupyter redland
jali py-jupyter-client redland-bindings
jansi py-jupyter-console redset
jansi-native py-jupyter-core redundans
jansson py-jupyter-packaging reframe
jasper py-jupyter-server regcm
jbigkit py-jupyterhub relax
jblob py-jupyterlab relion
jchronoss py-jupyterlab-pygments remhos
jdk py-jupyterlab-server rempi
jellyfish py-keras rename
jemalloc py-keras-applications rendercheck
jetty-project py-keras-preprocessing renderproto
jhpcn-df py-kerberos repeatmasker
jimtcl py-keyboard repeatmodeler
jline3 py-keyring repeatscout
jmol py-keyrings-alt resourceproto
jose py-kitchen revbayes
jpegoptim py-kiwisolver revocap-coupler
jq py-kmodes revocap-refiner
json-c py-knack rgb
json-cwx py-kombu rhash
json-fortran py-kubernetes rinetd
json-glib py-labours ripgrep
jsoncpp py-lap rivet
jstorm py-lark-parser rlwrap
jube py-latexcodec rmats
judy py-lazy rmgdft
julea py-lazy-object-proxy rmlab
julia py-lazy-property rna-seqc
junit4 py-lazyarray rnaquast
k8 py-leather rnaz
kafka py-lerc rng-tools
kahip py-libconf rngstreams
kaiju py-libensemble rocalution
kaks-calculator py-librosa rocblas
kaldi py-lifelines rocfft
kallisto py-lightgbm rocketmq
karma py-ligo-segments rocksdb
kassiopeia py-line-profiler rockstar
kbd py-linecache2 rocm-bandwidth-test
kbproto py-lit rocm-clang-ocl
kcov py-llvmlite rocm-cmake
kdiff3 py-lmfit rocm-dbgapi
kea py-lmodule rocm-debug-agent
kealib py-localcider rocm-device-libs
keepalived py-locket rocm-gdb
keepassxc py-lockfile rocm-opencl
kentutils py-logilab-common rocm-opencl-runtime
keyutils py-louie rocm-openmp-extras
kibana py-lru-dict rocm-smi
kicad py-lscsoft-glue rocm-smi-lib
kim-api py-luigi rocm-tensile
kinesis py-lxml rocm-validation-suite
kineto py-lz4 rocminfo
kitty py-lzstring rocprim
kmergenie py-m2r rocprofiler-dev
kmod py-macholib rocrand
knem py-machotools rocsolver
kokkos py-macs2 rocsparse
kokkos-kernels py-maestrowf rocthrust
kokkos-kernels-legacy py-magic roctracer-dev
kokkos-legacy py-mailchecker roctracer-dev-api
kokkos-nvcc-wrapper py-mako rodinia
kraken py-mapclassify root
kraken2 py-markdown rose
krb5 py-markdown2 ross
krims py-markovify routino
kripke py-markupsafe rpcsvc-proto
kubernetes py-matplotlib rpm
kvasir-mpl py-mayavi rr
kvtree py-mccabe rrdtool
kylin py-mdanalysis rsbench
ladot py-mechanize rsem
laghos py-memory-profiler rstart
lame py-memprof rstudio
lammps py-mercantile rsync
lapackpp py-merlin rsyslog
last py-metasv rt-tests
lastz py-methylcode rtags
laszip py-metpy rtax
latex2html py-mg-rast-tools ruby
latte py-mido ruby-asciidoctor
launchmon py-mikado ruby-erubis
lazyten py-minrpc ruby-gnuplot
lbann py-misopy ruby-hpricot
lbxproxy py-mistune ruby-mustache
lbzip2 py-mixedhtseq ruby-narray
lcals py-mlperf-logging ruby-rake
lcio py-mlxtend ruby-rdiscount
lcms py-mmcv ruby-ronn
lcov py-mmtf-python ruby-rubyinline
ldak py-mo-pack ruby-svn2git
ldc py-mock ruby-terminal-table
ldc-bootstrap py-modred ruby-thor
legion py-moltemplate ruby-tmuxinator
lemon py-monotonic ruby-unicode-display-width
leptonica py-monty ruby-xdg
less py-more-itertools ruby-zentest
lesstif py-motmetrics rust
leveldb py-mouseinfo rust-bindgen
lftp py-moviepy sabre
lhapdf py-mpi4py saga-gis
lhapdf5 py-mpld3 sailfish
libabigail py-mpmath salmon
libaec py-msal salmon-tddft
libaio py-msal-extensions sambamba
libao py-msgpack samblaster
libapplewm py-msgpack-numpy samrai
libapreq2 py-msrest samtools
libarchive py-msrestazure sandbox
libasr py-multi-key-dict satsuma2
libassuan py-multidict savanna
libatasmart py-multipledispatch saws
libatomic-ops py-multiprocess sblim-sfcc
libbacktrace py-multiqc sbml
libbeagle py-munch sbt
libbeato py-murmurhash scala
libbinio py-mutagen scalasca
libblastrampoline py-mx scallop
libbsd py-myhdl scalpel
libbson py-mypy scan-for-matches
libbytesize py-mypy-extensions scantailor
libc py-mysql-connector-python scipoptsuite
libcanberra py-mysqlclient scons
libcap py-mysqldb1 scorec-core
libcap-ng py-nanotime scorep
libcatalyst py-natsort scotch
libceed py-nbclassic scr
libcerf py-nbclient screen
libcgroup py-nbconvert scripts
libcint py-nbformat scrnsaverproto
libcircle py-nbsphinx scrot
libconfig py-nc-time-axis scs
libconfuse py-ndg-httpsclient sctk
libcroco py-neo sdl2
libctl py-neobolt sdl2-image
libcudf py-neotime sdsl-lite
libcuml py-nest-asyncio seacas
libcumlprims py-nestle sed
libcxxwrap-julia py-netcdf4 sensei
libcyaml py-netifaces sentencepiece
libdaemon py-netket sentieon-genomics
libdap4 py-networkit seqan
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libdc1394 py-neurokit2 seqprep
libdeflate py-nibabel seqtk
libdivsufsort py-nilearn serf
libdmx py-nipype sessreg
libdrm py-nltk setserial
libdwarf py-nodeenv setxkbmap
libeatmydata py-nose sfcgal
libecpint py-nose-cov sga
libedit py-nose2 sgpp
libelf py-nosexcover shadow
libemos py-notebook shapeit
libepoxy py-ntlm-auth shapeit4
libestr py-num2words shapelib
libev py-numba shared-mime-info
libevdev py-numcodecs shark
libevent py-numexpr shc
libevpath py-numexpr3 shengbte
libexif py-numpy shiny-server
libfabric py-numpydoc shiro
libfastcommon py-nvidia-ml-py shocklibs
libfastjson py-nvidia-ml-py3 shoremap
libffi py-oauth2client shortbred
libffs py-oauthlib shortstack
libfive py-olefile showfont
libflame py-omegaconf shtools
libfontenc py-onnx shuffile
libfs py-ont-fast5-api sickle
libfuse py-opcodes siesta
libfyaml py-opencensus signalp
libgcrypt py-opencensus-context signify
libgd py-openidc-client silo
libgeotiff py-openmc simde
libgff py-openpmd-validator simgrid
libgit2 py-openpyxl simmetrix-simmodsuite
libgpg-error py-openslide-python simplemoc
libgpuarray py-opentuner simsipm
libgridxc py-opppy simul
libgssglue py-opt-einsum simulationio
libgtextutils py-or-tools singularity
libharu py-ordered-set singularity-legacy
libhbaapi py-ordereddict singularityce
libhio py-oset sio
libhugetlbfs py-osqp sionlib
libiberty py-overpy sirius
libibumad py-owslib skilion-onedrive
libical py-pacifica-downloader skopeo
libice py-pacifica-namespace sl
libiconv py-pacifica-uploader slang
libid3tag py-packaging slate
libidl py-pager sleef
libidn2 py-palettable slepc
libimagequant py-pamela slf4j
libimobiledevice py-pandas slider
libinih py-pandocfilters sloccount
libint py-parameterized slurm
libisal py-paramiko smalt
libiscsi py-paramz smartdenovo
libjpeg py-parse smartmontools
libjpeg-turbo py-parsedatetime smof
libjson py-parso smproxy
libjwt py-partd snakemake
libkcapi py-particle snap
libkml py-path-py snap-berkeley
libksba py-pathlib snap-korf
liblas py-pathlib2 snappy
liblbfgs py-pathos snbone
liblbxutil py-pathspec sniffles
liblockfile py-patool snpeff
liblognorm py-patsy snphylo
liblouis py-pauvre snptest
libluv py-pbr soapdenovo-trans
libmacaroons py-peachpy soapdenovo2
libmad py-pem soci
libmatheval py-pep8 sofa-c
libmaus2 py-pep8-naming sollve
libmaxminddb py-performance sollya
libmbim py-periodictable solr
libmcrypt py-petastorm somatic-sniper
libmd py-petsc4py sombrero
libmesh py-pexpect sonlib
libmetalink py-phonenumbers sortmerna
libmicrodns py-phonopy sos
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libmmtf-cpp py-picmistandard source-highlight
libmng py-picrust sowing
libmnl py-picrust2 sox
libmo-unpack py-pid spades
libmodbus py-pil span-lite
libmonitor py-pillow spark
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libnbc py-pint sparsehash
libndp py-pip sparskit
libnet py-pipits sparta
libnetfilter-conntrack py-pispino spath
libnetfilter-cthelper py-pkgconfig spdlog
libnetfilter-cttimeout py-pkginfo specfem3d-globe
libnetfilter-queue py-plac spectrum-mpi
libnetworkit py-planar speex
libnfnetlink py-planet speexdsp
libnfs py-plotly spfft
libnfsidmap py-pluggy spglib
libnftnl py-ply sph2pipe
libnids py-pmw spherepack
libnl py-pomegranate spindle
libnotify py-pooch spiral
libnova py-portalocker spla
libnrm py-portend spm
libnsl py-poster spot
libogg py-pox sprng
liboldx py-poyo sqlcipher
libopts py-ppft sqlite
libp11 py-pre-commit sqlite-jdbc
libpam py-preshed sqlitebrowser
libpaper py-pretrainedmodels sqoop
libpcap py-prettytable squashfs
libpciaccess py-profilehooks squashfuse
libpeas py-proglog squid
libpfm4 py-progress sratoolkit
libpipeline py-progressbar2 srilm
libplist py-projectq sse2neon
libpmemobj-cpp py-prometheus-client sshfs
libpng py-promise sshpass
libproxy py-prompt-toolkit ssht
libpsl py-protobuf ssmtp
libpthread-stubs py-prov sspace-longread
libpulsar py-psutil sspace-standard
libqglviewer py-psyclone sst-core
libqrencode py-psycopg2 sst-dumpi
libquo py-ptyprocess sst-elements
librdkafka py-pudb sst-macro
librelp py-pure-eval sst-transports
libristra py-pure-sasl stacks
librmm py-py staden-io-lib
librom py-py-cpuinfo star
librsb py-py-spy star-ccm-plus
librsvg py-py2bit startup-notification
librtlsdr py-py2cairo stat
libsakura py-py2neo stata
libsamplerate py-py4j static-analysis-suite
libseccomp py-py6s stc
libsecret py-pyaestro steps
libsharp py-pyamg stinger
libshm py-pyani storm
libsigcpp py-pyarrow stow
libsigsegv py-pyasn1 strace
libsm py-pyasn1-modules stream
libsndfile py-pyautogui strelka
libsodium py-pybedtools stress
libspatialindex py-pybids stress-ng
libspatialite py-pybigwig string-view-lite
libspiro py-pybind11 stringtie
libsplash py-pybind11-stubgen stripack
libssh py-pybtex structure
libssh2 py-pybtex-docutils strumpack
libsvm py-pycairo su2
libszip py-pycares sublime-text
libtar py-pycbc subread
libtasn1 py-pychecker subversion
libtermkey py-pycifrw suite-sparse
libthai py-pycmd sumaclust
libtheora py-pycocotools sumo
libtiff py-pycodestyle sundials
libtirpc py-pycosat superchic
libtlx py-pycparser superlu
libtomlc99 py-pycrypto superlu-dist
libtommath py-pycuda superlu-mt
libtool py-pycurl supernova
libtorrent py-pydap sw4lite
libtree py-pydatalog swap-assembler
libuecc py-pydeprecate swarm
libunistring py-pydeps swfft
libunwind py-pydicom swftools
libusb py-pydispatcher swiftsim
libusbmuxd py-pydmd swig
libuser py-pydocstyle swipl
libuuid py-pydot symengine
libuv py-pydot2 symlinks
libvdwxc py-pydotplus sympol
libverto py-pydv sysbench
libvips py-pyeda syscalc
libvorbis py-pyelftools sysfsutils
libvori py-pyem sysget
libvterm py-pyepsg sysstat
libwebp py-pyface systemtap
libwebsockets py-pyfaidx sz
libwhich py-pyfasta tabix
libwindowswm py-pyfftw tajo
libx11 py-pyfiglet talass
libxau py-pyfits talloc
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libxaw3d py-pygdal tantan
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libxcomposite py-pygeos task
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libxdamage py-pygithub tasmanian
libxdmcp py-pyglet tassel
libxevie py-pygments tau
libxext py-pygments-pytest tauola
libxfixes py-pygobject tbl2asn
libxfont py-pygps tcl
libxfont2 py-pygpu tcl-itcl
libxfontcache py-pygresql tcl-tcllib
libxft py-pygtk tcl-tclxml
libxi py-pygtrie tclap
libxinerama py-pyheadtail tcoffee
libxkbcommon py-pyinstrument tcpdump
libxkbfile py-pyinstrument-cext tcptrace
libxkbui py-pyjnius tcsh
libxml2 py-pyjwt tdengine
libxmu py-pyke tealeaf
libxp py-pykml teckit
libxpm py-pykokkos-base tecplot
libxpresent py-pykwalify tempestremap
libxprintapputil py-pyliblzma templight
libxprintutil py-pylikwid templight-tools
libxrandr py-pylint tengine
libxrender py-pylops tensorflow-serving-client
libxres py-pymatgen tensorpipe
libxscrnsaver py-pymc3 termcap
libxshmfence py-pymeeus tesseract
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libxsmm py-pymol tetgen
libxstream py-pymongo tethex
libxt py-pymorph texinfo
libxtrap py-pympler texlive
libxtst py-pymsgbox texstudio
libxv py-pymumps textparser
libxvmc py-pymysql tfel
libxxf86dga py-pynacl the-platinum-searcher
libxxf86misc py-pynio the-silver-searcher
libxxf86vm py-pynn thepeg
libyaml py-pynvml thornado-mini
libyogrt py-pyodbc thrift
libzip py-pyomo thrust
libzmq py-pyopencl tidy-html5
liggghts py-pyopenssl tig
lighttpd py-pypar time
ligra py-pyparsing timedatex
likwid py-pypeflow timemory
linkphase3 py-pypeg2 tinker
linktest py-pyperclip tinyxml
linsys-v py-pyperf tinyxml2
linux-headers py-pyprecice tioga
linux-pam py-pyprof2html tippecanoe
lis py-pyproj tiptop
listres py-pyqi tix
lizard py-pyqt4 tixi
lksctp-tools py-pyqt5 tk
llvm py-pyquaternion tkrzw
llvm-amdgpu py-pyrad tldd
llvm-doe py-pyrect tmalign
llvm-openmp py-pyrosar tmhmm
llvm-openmp-ompt py-pyrsistent tmux
lm-sensors py-pysam tomcat
lmbench py-pyscaf toml11
lmdb py-pyscf tophat
lmod py-pyscreeze torque
lndir py-pyserial totalview
log4c py-pyshp tpm2-tss
log4cplus py-pyside tppred
log4cpp py-pyside2 tracer
log4cxx py-pysmartdl transabyss
logrotate py-pysocks transdecoder
logstash py-pysolar transposome
loki py-pyspark transrate
looptools py-pysqlite transset
lordec py-pystac trapproto
lorene py-pytailf tree
lp-solve py-pytest treelite
lrslib py-pytest-arraydiff treesub
lrzip py-pytest-benchmark trf
lsf py-pytest-cache triangle
lshw py-pytest-check-links trident
lsof py-pytest-cov trilinos
lsscsi py-pytest-cpp trilinos-catalyst-ioss-adapter
ltp py-pytest-doctestplus trimal
ltr-retriever py-pytest-flake8 trimgalore
ltrace py-pytest-flakes trimmomatic
lua py-pytest-forked trinity
lua-bitlib py-pytest-html trinotate
lua-lpeg py-pytest-httpbin trnascan-se
lua-luafilesystem py-pytest-isort tskit
lua-luajit py-pytest-metadata tulip
lua-luaposix py-pytest-mock turbine
lua-mpack py-pytest-mypy turbomole
lua-sol2 py-pytest-openfiles turnserver
lucene py-pytest-pep8 tut
luit py-pytest-qt twm
lulesh py-pytest-runner tycho2
lumpy-sv py-pytest-timeout typhon
lustre py-pytest-xdist typhonio
lvarray py-python-benedict uchardet
lvm2 py-python-box ucx
lwgrp py-python-certifi-win32 udunits
lwm2 py-python-daemon ufo-core
lxc py-python-dateutil ufo-filters
lynx py-python-docs-theme umap
lz4 py-python-editor umesimd
lzma py-python-engineio umoci
lzo py-python-fmask umpire
lzop py-python-fsutil unblur
m4 py-python-gitlab uncrustify
macfuse py-python-igraph unibilium
macsio py-python-jenkins unifdef
mad-numdiff py-python-json-logger unifyfs
madgraph5amc py-python-ldap unigen
mafft py-python-levenshtein unison
magics py-python-logstash units
magma py-python-louvain unittest-cpp
mahout py-python-lzo universal-ctags
makedepend py-python-magic unixodbc
maker py-python-mapnik unqlite
mallocmc py-python-meep unrar
maloc py-python-memcached unuran
man-db py-python-oauth2 unzip
manta py-python-rapidjson upcxx
mapnik py-python-slugify uqtk
mapserver py-python-socketio uriparser
mapsplice2 py-python-subunit usbutils
maq py-python-swiftclient usearch
margo py-python-utils userspace-rcu
mariadb py-python-xlib utf8proc
mariadb-c-client py-python-xmp-toolkit util-linux
mark py-python3-xlib util-linux-uuid
masa py-pythonqwt util-macros
mash py-pythonsollya uvw
masurca py-pythran valgrind
mathematica py-pytimeparse vampirtrace
matio py-pytools vapor
matlab py-pytorch-gradual-warmup-lr vardictjava
maven py-pytorch-lightning variorum
maverick py-pytorch-sphinx-theme varnish-cache
mawk py-pytweening varscan
mbdyn py-pytz vasp
mbedtls py-pyudev vbfnlo
mc py-pyugrid vc
mcl py-pyusb vcftools
mcpp py-pyutilib vcsh
mcutils py-pyvcf vdt
mdsplus py-pywavelets veccore
mdtest py-pywcs vecgeom
med py-pyyaml veclibfort
meep py-pyzmq vegas2
mefit py-qsymm veloc
megadock py-qtawesome velvet
megahit py-qtconsole velvetoptimiser
memaxes py-qtpy verilator
memcached py-quantities verrou
meme py-quast vesta
memkind py-queryablelist vgm
memsurfer py-questionary videoproto
memtester py-radiant-mlhub viennarna
meraculous py-radical-utils viewres
mercurial py-ranger-fm vifi
mercury py-rarfile vigra
mesa py-rasterio vim
mesa-demos py-ratelim virtualgl
mesa-glu py-raven virtuoso
mesa18 py-ray visit
meshkit py-rbtools visit-cgns
meson py-rdflib visit-ffp
mesquite py-readme-renderer visit-mfem
metabat py-recommonmark visit-silo
metall py-redis visit-unv
metaphysicl py-regex vizglow
metis py-reindent vmatch
metkit py-reportlab vmc
mfem py-repoze-lru vmd
mg py-reproject volk
mgis py-requests voropp
microbiomeutil py-requests-ftp votca-csg
migraphx py-requests-futures votca-csg-tutorials
migrate py-requests-mock votca-csgapps
mii py-requests-ntlm votca-ctp
minc-toolkit py-requests-oauthlib votca-tools
minced py-requests-toolbelt votca-xtp
mindthegap py-requests-unixsocket vpfft
miniaero py-resampy vpic
miniamr py-responses vsearch
miniapp-ascent py-restview vsftpd
miniasm py-resultsfile vt
miniconda2 py-retry-decorator vtable-dumper
miniconda3 py-retrying vtk
minife py-rfc3986 vtk-h
miniforge3 py-rich vtk-m
minigan py-rios vvtest
minighost py-rioxarray w3m
minigmg py-rise wannier90
minimap2 py-rmm warpx
minimd py-rnacocktail watch
minio py-rnc2rng wayland
miniqmc py-robotframework wayland-protocols
minisign py-rope wcs
minismac2d py-rosdep wcslib
minitri py-rosdistro webbench
minivite py-rosinstall weechat
minixyce py-rosinstall-generator weighttp
minizip py-rospkg wget
minuit py-rply wgsim
miopen-hip py-rpy2 which
miopen-opencl py-rq whizard
miopengemm py-rsa windowswmproto
mira py-rseqc wireshark
miranda py-rtree wonton
mirdeep2 py-ruamel-ordereddict wordnet
mitofates py-ruamel-yaml workrave
mitos py-ruamel-yaml-clib wps
mivisionx py-rx wrf
mixcr py-s3cmd wrk
mkfontdir py-s3fs wsmancli
mkfontscale py-s3transfer wt
mlhka py-sacremoses wtdbg2
mlocate py-saga-python wxparaver
mlperf-deepcam py-salib wxpropgrid
mmg py-sanic wxwidgets
mmv py-scandir x11perf
moab py-scientificpython xabclib
mochi-margo py-scikit-build xapian-core
model-traits py-scikit-fmm xauth
modeltest-ng py-scikit-image xbacklight
modern-wheel py-scikit-learn xbiff
modylas py-scikit-optimize xbitmaps
mofem-cephas py-scipy xbraid
mofem-fracture-module py-scoop xcalc
mofem-minimal-surface-equation py-scp xcb-demo
mofem-users-modules py-scs xcb-proto
mokutil py-seaborn xcb-util
molcas py-secretstorage xcb-util-cursor
molden py-segmentation-models-pytorch xcb-util-errors
mongo-c-driver py-selenium xcb-util-image
mongo-cxx-driver py-semantic-version xcb-util-keysyms
mongodb-async-driver py-semver xcb-util-renderutil
mono py-send2trash xcb-util-wm
montage py-sentencepiece xcb-util-xrm
moosefs py-sentry-sdk xcfun
moreutils py-seqeval xclip
mosh py-seriate xclipboard
mothur py-setproctitle xclock
motif py-setuptools xcmiscproto
motioncor2 py-setuptools-git xcmsdb
mount-point-attributes py-setuptools-rust xcompmgr
mozjs py-setuptools-scm xconsole
mpark-variant py-setuptools-scm-git-archive xcursor-themes
mpas-model py-sfepy xcursorgen
mpc py-sgp4 xdbedizzy
mpdecimal py-sh xdelta
mpe2 py-shapely xditview
mpest py-shiboken xdm
mpfi py-shortuuid xdmf3
mpfr py-shroud xdotool
mpi-bash py-shtab xdpyinfo
mpich py-sierrapy xdriinfo
mpifileutils py-simplegeneric xedit
mpilander py-simplejson xerces-c
mpileaks py-simplekml xeus
mpip py-singledispatch xev
mpir py-sip xextproto
mpix-launch-swift py-six xeyes
mpt py-slepc4py xf86bigfontproto
mptensor py-slurm-pipeline xf86dga
mrbayes py-smart-open xf86dgaproto
mrbench py-smmap xf86driproto
mrchem py-snappy xf86miscproto
mrcpp py-sncosmo xf86rushproto
mrnet py-sniffio xf86vidmodeproto
mrtrix3 py-snowballstemmer xfd
mscgen py-snuggs xfindproxy
msgpack-c py-sonlib xfontsel
mshadow py-sortedcollections xforms
msmc py-sortedcontainers xfs
msmc2 py-soundfile xfsdump
mstk py-soupsieve xfsinfo
mt-metis py-spacy xfsprogs
multitail py-spacy-models-en-core-web-sm xfwp
multitime py-spacy-models-en-vectors-web-lg xgamma
multiverso py-sparse xgboost
mumax py-spatialist xgc
mummer py-spatialite xhmm
mummer4 py-spdlog xhost
mumps py-spectra xineramaproto
munge py-spefile xinit
muparser py-spgl1 xinput
muscle py-spglib xios
muse py-sphinx xkbcomp
musl py-sphinx-bootstrap-theme xkbdata
muster py-sphinx-copybutton xkbevd
mutationpp py-sphinx-gallery xkbprint
mvapich2 py-sphinx-rtd-theme xkbutils
mvapich2-gdr py-sphinxautomodapi xkeyboard-config
mvapich2x py-sphinxcontrib-applehelp xkill
mxm py-sphinxcontrib-bibtex xlc
mxml py-sphinxcontrib-devhelp xlf
mxnet py-sphinxcontrib-htmlhelp xload
mysql py-sphinxcontrib-issuetracker xlogo
mysqlpp py-sphinxcontrib-jsmath xlsatoms
n2p2 py-sphinxcontrib-mermaid xlsclients
nacos py-sphinxcontrib-programoutput xlsfonts
nag py-sphinxcontrib-qthelp xmag
nalu py-sphinxcontrib-serializinghtml xman
nalu-wind py-sphinxcontrib-trio xmessage
namd py-sphinxcontrib-websupport xmh
nano py-sphobjinv xmlf90
nanoflann py-spyder xmlrpc-c
nanomsg py-spykeutils xmlto
nanopb py-sqlalchemy xmodmap
nasm py-sqlalchemy-utils xmore
nauty py-sqlparse xnnpack
nbdkit py-srsly xorg-cf-files
ncbi-magicblast py-sshtunnel xorg-docs
ncbi-rmblastn py-statsmodels xorg-gtest
ncbi-toolkit py-stdlib-list xorg-server
nccl py-stestr xorg-sgml-doctools
nccl-tests py-stevedore xphelloworld
nccmp py-stopit xplor-nih
ncdu py-storm xplsprinters
ncftp py-stratify xpmem
ncl py-stsci-distutils xpr
nco py-subprocess32 xprehashprinterlist
ncompress py-subrosa xprop
ncurses py-svgpathtools xproto
ncview py-svgwrite xproxymanagementprotocol
ndiff py-symengine xqilla
neartree py-symfit xrandr
nek5000 py-sympy xrdb
nekbone py-syned xrefresh
nekcem py-systemd-python xrootd
nekrs py-tables xrx
nektar py-tabulate xsbench
nektools py-tap-py xscope
neo4j py-tatsu xsd
neovim py-tblib xsdk
nest py-tempora xsdk-examples
net-snmp py-tenacity xsdktrilinos
netcdf-c py-tensorboard xset
netcdf-cxx py-tensorboard-plugin-wit xsetmode
netcdf-cxx4 py-tensorboardx xsetpointer
netcdf-fortran py-tensorflow xsetroot
netdata py-tensorflow-estimator xsimd
netgauge py-tensorflow-hub xsm
netgen py-tensorflow-probability xstdcmap
netkit-ftp py-termcolor xtensor
netlib-lapack py-terminado xtensor-python
netlib-scalapack py-testfixtures xterm
netlib-xblas py-testinfra xtl
netpbm py-testpath xtrans
netperf py-testrepository xtrap
nettle py-testresources xts
neuron py-testscenarios xvidtune
newt py-testtools xvinfo
nextflow py-tetoolkit xwd
nfft py-text-unidecode xwininfo
nfs-ganesha py-textblob xwud
nfs-utils py-texttable xxd-standalone
nghttp2 py-tfdlpack xxhash
nginx py-theano xyce
ngmerge py-thinc xz
ngmlr py-thirdorder yajl
ngspice py-threadpoolctl yambo
nicstat py-tifffile yaml-cpp
nim py-timm yara
ninja py-tinyarray yarn
ninja-fortran py-tokenizers yasm
nix py-toml ycsb
njet py-tomlkit yoda
nlcglib py-tomopy yorick
nlohmann-json py-toolz z-checker
nlohmann-json-schema-validator py-torch z3
nlopt py-torch-cluster zabbix
nmap py-torch-geometric zfp
nn-c py-torch-nvidia-apex zfs
nnpack py-torch-scatter zig
nnvm py-torch-sparse zip
node-js py-torch-spline-conv zipkin
notmuch py-torchaudio zlib
npb py-torchfile zlib-ng
npm py-torchmeta zoltan
npth py-torchmetrics zookeeper
nrm py-torchsummary zookeeper-benchmark
ns-3-dev py-torchtext zsh
nseg py-torchvision zstd
nsimd py-tornado zstr
nspr py-tox zziplib

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Link Dependencies:
cuda, boost, dd4hep, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.1, 0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, boost
Link Dependencies:
cuda, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0, xsdk-0.2.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amdblis

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
blas
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
cuda, cmake, mpi, amrex, hypre, netcdf-c, masa, openfast
Link Dependencies:
cuda, mpi, amrex, hypre, netcdf-c, masa, openfast
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand, rocprim
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.3.5, 2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : http://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, mesa18, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
mesa18, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, papi, cuda, boost
Link Dependencies:
binutils, activeharmony, otf2, mpi, gperftools, jemalloc, papi, cuda, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.5
Build Dependencies:
cuda, cmake, nlohmann-json, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, nlohmann-json, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy, py-pybind11
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.0, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
20.2.1
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
21.0.2, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.0.3, 9.0.2
Build Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.18.2
Build Dependencies:
autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.0.1, 4.0.1
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake
Link Dependencies:
comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59, 2.13
Build Dependencies:
m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.16.1
Build Dependencies:
m4, autoconf, automake, libtool, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, kvtree, dtcmp, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, kvtree, dtcmp, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gmp, llvm, libyaml
Link Dependencies:
gmp, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.4, 4.3
Build Dependencies:
ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.0, 7.6.0, 7.4.4
Build Dependencies:
libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Description:
Oracle Berkeley DB

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blaspp

Homepage:
Spack package:
Versions:
master, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main
Build Dependencies:
autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, zlib
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Description:
A Binary Decision Diagram library.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

ca-certificates-mozilla

Homepage:
Spack package:
Versions:
2021-04-13, 2021-01-19, 2020-12-08, 2020-10-14, 2020-07-22, 2020-06-24, 2020-01-01, 2019-11-27, 2019-10-16, 2019-08-28
Description:
The Mozilla CA certificate store in PEM format

cabana

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, kokkos-legacy, kokkos, mpi
Link Dependencies:
kokkos-legacy, kokkos, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cuda, cmake, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
cuda, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
cairo, libsigcpp
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.6.0, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cuda, cmake, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow, python
Link Dependencies:
cuda, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cub
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.5.1, 2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.8.0, 0.7.0
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai, cub
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0-alpha2, 4.0-alpha1, 3.11.6, 3.11.5
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ use case library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.0-preview3, 2.13.4, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cbflib

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
m4
Description:
CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
rpcsvc-proto, libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elfutils, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains collector and runtime contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package:
Versions:
4.3, 4.2.1, 4.2, 4.1, 4.0, 3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
cmake, zstd, gperf, libxslt, zlib
Link Dependencies:
zstd, gperf, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.5, 2.4
Build Dependencies:
cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccls

Homepage:
Spack package:
Versions:
0.20201025
Build Dependencies:
cmake, llvm, rapidjson
Link Dependencies:
llvm, rapidjson
Description:
C/C++ language server

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.2.10, 7.2.4, 7.2.3, 7.2.2, 7.2.1, 7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94h
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
1.9.10, 1.9.9, 1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
4.0.0, 3.0.0, 2.0.0, 1.0.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, libceed, occa, nekrs, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, libceed, occa, nekrs, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
2.0.0, 1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
3.49, 3.48, 3.47, 3.45, 3.42, 3.41, 3.37
Build Dependencies:
curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
0.7.0
Build Dependencies:
ncurses, readline, flex, bison, texinfo
Link Dependencies:
ncurses, readline
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
autoconf, automake, libtool, m4, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cget

Homepage:
Spack package:
Versions:
0.1.9
Build Dependencies:
python, py-setuptools, py-six, py-click, py-subprocess32
Run Dependencies:
python, py-six, py-click, py-subprocess32
Description:
Cmake package retrieval.

cgl

Homepage:
Spack package:
Versions:
0.60.3
Build Dependencies:
coinutils, osi, clp
Link Dependencies:
coinutils, osi, clp
Description:
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.2.0, 4.1.2, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chai

Homepage:
Spack package:
Versions:
develop, master, 2.3.0, 2.2.2, 2.2.1, 2.2.0, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, umpire, raja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, umpire, raja
Description:
Copy-hiding array interface for data migration between memory spaces

changa

Homepage:
Spack package:
Versions:
master, 3.4
Build Dependencies:
charmpp
Link Dependencies:
charmpp
Description:
ChaNGa (Charm N-body GrAvity solver) is a code to perform collisionless N-body simulations. It can perform cosmological simulations with periodic boundary conditions in comoving coordinates or simulations of isolated stellar systems. It also can include hydrodynamics using the Smooth Particle Hydrodynamics (SPH) technique. It uses a Barnes-Hut tree to calculate gravity, with hexadecapole expansion of nodes and Ewald summation for periodic forces. Timestepping is done with a leapfrog integrator with individual timesteps for each particle.

channelflow

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, eigen, fftw, mpi, hdf5, netcdf-c, boost
Link Dependencies:
eigen, fftw, mpi, hdf5, netcdf-c, boost
Description:
Channelflow is a software system for numerical analysis of the incompressible fluid flow in channel geometries, written in C++.

chapel

Homepage:
Spack package:
Versions:
1.24.1, 1.24.0, 1.23.0, 1.22.1, 1.22.0, 1.21.0, 1.20.0, 1.19.0, 1.18.0
Description:
Chapel is a modern programming language that is parallel, productive, portable, scalable and open-source.

chaplin

Homepage:
Spack package:
Versions:
1.2
Description:
The FORTRAN library CHAPLIN enables you to numerically evaluate Harmonic polylogarithms up to weight 4 for any complex argument.

charliecloud

Homepage:
Spack package:
Versions:
master, 0.24, 0.23, 0.22, 0.21, 0.19, 0.18
Build Dependencies:
m4, autoconf, automake, libtool, rsync, py-sphinx, py-sphinx-rtd-theme
Run Dependencies:
python, py-lark-parser, py-requests
Test Dependencies:
bats
Description:
Lightweight user-defined software stacks for HPC.

charmpp

Homepage:
Spack package:
Versions:
main, 6.10.2, 6.10.1, 6.10.0, 6.9.0, 6.8.2, 6.8.1, 6.8.0, 6.7.1, 6.7.0, 6.6.1, 6.6.0, 6.5.1
Build Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Link Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Description:
Charm++ is a parallel programming framework in C++ supported by an adaptive runtime system, which enhances user productivity and allows programs to run portably from small multicore computers (your laptop) to the largest supercomputers.

chatterbug

Homepage:
Spack package:
Versions:
develop, 1.0
Build Dependencies:
mpi, scorep
Link Dependencies:
mpi, scorep
Description:
A suite of communication-intensive proxy applications that mimic commonly found communication patterns in HPC codes. These codes can be used as synthetic codes for benchmarking, or for trace generation using Score-P / OTF2.

check

Homepage:
Spack package:
Versions:
0.12.0, 0.11.0, 0.10.0
Description:
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

chgcentre

Homepage:
Spack package:
Versions:
1.6
Build Dependencies:
cmake, casacore, gsl
Link Dependencies:
casacore, gsl
Description:
The chgcentre tool can be used to change the phase centre of a measurement set.

chill

Homepage:
Spack package:
Versions:
master, 0.3
Build Dependencies:
boost, rose, autoconf, automake, libtool, m4, iegenlib, bison, flex, python, isl, gmp
Link Dependencies:
python
Run Dependencies:
rose, iegenlib
Description:
A polyheadral compiler for autotuning

chlorop

Homepage:
Spack package:
Versions:
1.1
Run Dependencies:
awk
Description:
Chlorop predicts the presence of chloroplast transit peptides in protein sequences and the location of potential cTP cleavage sites. You will need to obtain the tarball by visiting the URL and completing the form. You can then either run spack install with the tarball in the directory, or add it to a mirror. You will need to set the CHLOROTMP environment variable to the full path of the directory you want chlorop to use as a temporary directory.

chombo

Homepage:
Spack package:
Versions:
develop, 3.2
Build Dependencies:
blas, lapack, gmake, mpi, hdf5
Link Dependencies:
blas, lapack, mpi, hdf5
Description:
The Chombo package provides a set of tools for implementing finite difference and finite-volume methods for the solution of partial differential equations on block-structured adaptively refined logically rectangular (i.e. Cartesian) grids.

chrony

Homepage:
Spack package:
Versions:
3.5.1, 3.5, 3.4, 3.3
Build Dependencies:
ruby-asciidoctor, bison
Link Dependencies:
ruby-asciidoctor
Description:
chrony is a versatile implementation of the Network Time Protocol (NTP). It can synchronise the system clock with NTP servers, reference clocks(e.g. GPS receiver), and manual input using wristwatch and keyboard.

chrpath

Homepage:
Spack package:
Versions:
0.16
Description:
chrpath: Modifies the dynamic library load path (rpath and runpath) of compiled programs and libraries.

cinch

Homepage:
Spack package:
Versions:
master, 1.0
Description:
Cinch is a set of utilities and configuration options designed to make cmake builds easy to use and manage.

cistem

Homepage:
Spack package:
Versions:
1.0.0-beta
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

citcoms

Homepage:
Spack package:
Versions:
master, 3.3.1, 3.2.0
Build Dependencies:
mpi, zlib, automake, autoconf, libtool, m4, hc, cuda, hdf5
Link Dependencies:
mpi, zlib, hc, cuda, hdf5
Run Dependencies:
python
Description:
CitcomS is a finite element code designed to solve compressible thermochemical convection problems relevant to Earth's mantle.

cityhash

Homepage:
Spack package:
Versions:
master, 2013-07-31
Description:
CityHash, a family of hash functions for strings.

ck

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
CK calculates class-level and metric-level code metrics in Java projects by means of static analysis (i.e. no need for compiled code).

clamav

Homepage:
Spack package:
Versions:
0.101.2
Build Dependencies:
pkgconfig, json-c, openssl, pcre, yara, zlib, bzip2
Link Dependencies:
json-c, openssl, pcre, yara, zlib, bzip2, curl
Description:
Open source antivirus engine for detecting trojans, viruses, malware & other malicious threats.

clamr

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, mpi, mpe
Link Dependencies:
mpi, mpe
Description:
The CLAMR code is a cell-based adaptive mesh refinement (AMR) mini-app developed as a testbed for hybrid algorithm development using MPI and OpenCL GPU code.

clapack

Homepage:
Spack package:
Versions:
3.2.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CLAPACK is a f2c'ed version of LAPACK. The CLAPACK library was built using a Fortran to C conversion utility called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain C code, and then modified to improve readability. CLAPACK's goal is to provide LAPACK for someone who does not have access to a Fortran compiler.

clara

Homepage:
Spack package:
Versions:
1.1.5, 1.1.4, 1.1.3, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
A simple to use, composable, command line parser for C++ 11 and beyond.

claw

Homepage:
Spack package:
Versions:
master, 2.0.2, 2.0.1, 2.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0
Build Dependencies:
cmake, ant, bison, flex, java, libxml2
Link Dependencies:
java, libxml2
Description:
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran. From a single source code, it generates architecture specific code decorated with OpenMP or OpenACC

cleaveland4

Homepage:
Spack package:
Versions:
4.4
Build Dependencies:
perl, perl-math-cdf, bowtie, viennarna, r, samtools
Link Dependencies:
bowtie, viennarna, samtools
Run Dependencies:
perl, perl-math-cdf, r
Description:
CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

cleverleaf

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, samrai, hdf5, boost
Link Dependencies:
samrai, hdf5, boost
Description:
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National Laboratory. The primary goal of CleverLeaf is to evaluate the application of AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.

clfft

Homepage:
Spack package:
Versions:
2.12.2
Build Dependencies:
cmake, opencl, boost
Link Dependencies:
opencl, boost
Description:
a software library containing FFT functions written in OpenCL

clhep

Homepage:
Spack package:
Versions:
2.4.4.0, 2.4.1.3, 2.4.1.2, 2.4.1.0, 2.4.0.4, 2.4.0.2, 2.4.0.1, 2.4.0.0, 2.3.4.6, 2.3.4.5, 2.3.4.4, 2.3.4.3, 2.3.4.2, 2.3.3.2, 2.3.3.1, 2.3.3.0, 2.3.2.2, 2.3.1.1, 2.3.1.0, 2.3.0.0, 2.2.0.8, 2.2.0.5, 2.2.0.4
Build Dependencies:
cmake
Description:
CLHEP is a C++ Class Library for High Energy Physics.

cli11

Homepage:
Spack package:
Versions:
1.9.1
Build Dependencies:
cmake
Description:
CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

clinfo

Homepage:
Spack package:
Versions:
2.2.18.04.06
Build Dependencies:
opencl
Link Dependencies:
opencl
Description:
Print all known information about all available OpenCL platforms and devices in the system.

clingo

Homepage:
Spack package:
Versions:
master, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python, py-cffi
Link Dependencies:
python
Run Dependencies:
python, py-cffi
Description:
Clingo: A grounder and solver for logic programs Clingo is part of the Potassco project for Answer Set Programming (ASP). ASP offers a simple and powerful modeling language to describe combinatorial problems as logic programs. The clingo system then takes such a logic program and computes answer sets representing solutions to the given problem.

clingo-bootstrap

Homepage:
Spack package:
Versions:
master, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python, py-cffi
Link Dependencies:
python
Run Dependencies:
python, py-cffi
Description:
Clingo with some options used for bootstrapping

cln

Homepage:
Spack package:
Versions:
master, 1.3.6, 1.3.5, 1.3.4, 1.3.3, 1.3.2, 1.3.1, 1.3.0, 1.2.2, 1.2.1, 1.2.0
Build Dependencies:
autoconf, automake, libtool, m4, gmp, texinfo, gettext
Link Dependencies:
gmp
Description:
CLN is a library for efficient computations with all kinds of numbers in arbitrary precision. It features number classes for unlimited length integers, rationals, arbitrary precision floating point numbers and much more.

cloc

Homepage:
Spack package:
Versions:
1.84, 1.80, 1.74
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Count, or compute differences of, physical lines of source code in the given files (may be archives such as compressed tarballs or zip files) and/or recursively below the given directories.

cloog

Homepage:
Spack package:
Versions:
0.18.1, 0.18.0, 0.17.0
Build Dependencies:
gmp, isl
Link Dependencies:
gmp, isl
Description:
CLooG is a free software and library to generate code for scanning Z-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that reaches each integral point of one or more parameterized polyhedra.

cloverleaf

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
mpi, cuda
Link Dependencies:
mpi, cuda
Description:
Proxy Application. CloverLeaf is a miniapp that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

cloverleaf3d

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CloverLeaf3D is 3D version of the CloverLeaf mini- app. CloverLeaf is a mini-app that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

clp

Homepage:
Spack package:
Versions:
1.17.6, 1.17.4, 1.16.11
Build Dependencies:
coinutils, osi
Link Dependencies:
coinutils, osi
Description:
Clp (Coin-or linear programming) is an open-source linear programming solver written in C++.

clustal-omega

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
argtable
Link Dependencies:
argtable
Description:
Clustal Omega: the last alignment program you'll ever need.

clustalw

Homepage:
Spack package:
Versions:
2.1
Description:
Multiple alignment of nucleic acid and protein sequences.

cmake

Homepage:
Spack package:
Versions:
3.20.5, 3.20.4, 3.20.3, 3.20.2, 3.20.1, 3.20.0, 3.19.8, 3.19.7, 3.19.6, 3.19.5, 3.19.4, 3.19.3, 3.19.2, 3.19.1, 3.19.0, 3.18.6, 3.18.5, 3.18.4, 3.18.3, 3.18.2, 3.18.1, 3.18.0, 3.17.5, 3.17.4, 3.17.3, 3.17.1, 3.17.0, 3.16.9, 3.16.8, 3.16.7, 3.16.6, 3.16.5, 3.16.4, 3.16.3, 3.16.2, 3.16.1, 3.16.0, 3.15.7, 3.15.6, 3.15.5, 3.15.4, 3.15.3, 3.15.2, 3.15.1, 3.15.0, 3.14.7, 3.14.6, 3.14.5, 3.14.4, 3.14.3, 3.14.2, 3.14.1, 3.14.0, 3.13.5, 3.13.4, 3.13.3, 3.13.2, 3.13.1, 3.13.0, 3.12.4, 3.12.3, 3.12.2, 3.12.1, 3.12.0, 3.11.4, 3.11.3, 3.11.2, 3.11.1, 3.11.0, 3.10.3, 3.10.2, 3.10.1, 3.10.0, 3.9.6, 3.9.4, 3.9.2, 3.9.0, 3.8.2, 3.8.1, 3.8.0, 3.7.2, 3.7.1, 3.6.1, 3.6.0, 3.5.2, 3.5.1, 3.5.0, 3.4.3, 3.4.0, 3.3.1, 3.1.0, 3.0.2, 2.8.10.2
Build Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, python, py-sphinx, openssl, ncurses
Link Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, openssl, ncurses
Description:
A cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

cmaq

Homepage:
Spack package:
Versions:
5.3.1, 5.3
Description:
Code base for the U.S. EPA's Community Multiscale Air Quality Model (CMAQ).

cmark

Homepage:
Spack package:
Versions:
0.29.0, 0.28.3, 0.28.2, 0.28.1, 0.28.0, 0.27.1
Build Dependencies:
cmake
Description:
cmark is the C reference implementation of CommonMark, a rationalized version of Markdown syntax with a spec.

cminpack

Homepage:
Spack package:
Versions:
master, 1.3.6
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
This is a C version of the minpack minimization package. Minpack includes software for solving nonlinear equations and nonlinear least squares problems.

cmocka

Homepage:
Spack package:
Versions:
1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
Unit-testing framework in pure C

cmockery

Homepage:
Spack package:
Versions:
0.1.2, 0.1.1, 0.1.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
A lightweight library to simplify and generalize the process of writing unit tests for C applications.

cmor

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2
Build Dependencies:
uuid, netcdf-c, udunits, hdf5, python, py-numpy
Link Dependencies:
uuid, netcdf-c, udunits, hdf5, python
Run Dependencies:
python, py-numpy
Description:
Climate Model Output Rewriter is used to produce CF-compliant netCDF files. The structure of the files created by the library and the metadata they contain fulfill the requirements of many of the climate community's standard model experiments.

cnmem

Homepage:
Spack package:
Versions:
git
Build Dependencies:
cmake
Description:
CNMem mempool for CUDA devices

cnpy

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
cnpy: library to read/write .npy and .npz files in C/C++.

cntk

Homepage:
Spack package:
Versions:
master, 2.0
Build Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Link Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Description:
The Microsoft Cognitive Toolkit is a unified deep-learning toolkit that describes neural networks as a series of computational steps via a directed graph.

cntk1bitsgd

Homepage:
Spack package:
Versions:
master, c8b77d
Description:
CNTK1bitSGD is the header-only 1-bit stochastic gradient descent (1bit- SGD) library for the Computational Network Toolkit (CNTK).

cnvnator

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Link Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Description:
A tool for CNV discovery and genotyping from depth-of-coverage by mapped reads.

codar-cheetah

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0, 0.5
Build Dependencies:
python
Run Dependencies:
python
Description:
CODAR Cheetah: The CODAR Experiment Harness for Exascale science applications.

code-server

Homepage:
Spack package:
Versions:
3.4.1, 3.1.1, 3.1.0
Build Dependencies:
git
Link Dependencies:
git
Description:
code-server is VS Code running on a remote server, accessible through the browser.

codec2

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
cmake
Description:
Open source speech codec designed for communications quality speech between 450 and 3200 bit/s. The main application is low bandwidth HF/VHF digital radio.

codes

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0
Build Dependencies:
autoconf, automake, libtool, m4, pkgconfig, bison, flex, mpi, ross, sst-dumpi
Link Dependencies:
mpi, ross, sst-dumpi
Description:
CO-Design of multi-layer Exascale Storage (CODES) simulation framework

coevp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
mpi, silo, flann, lapack
Link Dependencies:
mpi, silo, flann, lapack
Description:
CoEVP is a scale-bridging proxy application for embedded viscoplasticity applications. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. Due to the size and complexity of the studied models, as well as restrictions on distribution, the currently available LULESH proxy application provides the coarse-scale model implementation and the ASPA proxy application provides the adaptive sampling support.

cohmm

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
gnuplot
Link Dependencies:
gnuplot
Description:
An anticipated important use-case for next-generation supercomputing is multiscale modeling, in which continuum equations for large-scale material deformation are augmented with high-fidelity, fine-scale simulations that provide constitutive data on demand.

coin3d

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.0.0
Build Dependencies:
boost, doxygen, perl
Link Dependencies:
glu, gl, libsm, libxext, libice, uuid, libxcb, libxau
Description:
Coin is an OpenGL-based, 3D graphics library that has its roots in the Open Inventor 2.1 API, which Coin still is compatible with.

coinhsl

Homepage:
Spack package:
Versions:
2019.05.21, 2015.06.23, 2014.01.17, 2014.01.10
Build Dependencies:
blas
Link Dependencies:
blas
Description:
CoinHSL is a collection of linear algebra libraries (KB22, MA27, MA28, MA54, MA57, MA64, MA77, MA86, MA97, MC19, MC34, MC64, MC68, MC69, MC78, MC80, OF01, ZB01, ZB11) bundled for use with IPOPT and other applications that use these HSL routines. Note: CoinHSL is licensed software. You will need to request a license from Research Councils UK and download a .tar.gz archive of CoinHSL yourself. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

coinutils