Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 5165 mainline packages:

3proxy nek5000 py-torch-sparse
abduco nekbone py-torch-spline-conv
abi-compliance-checker nekcem py-torchaudio
abi-dumper nektar py-torchfile
abinit nektools py-torchsummary
abseil-cpp neo4j py-torchtext
abyss neovim py-torchvision
accfft nest py-tornado
acct netcdf-c py-tox
accumulo netcdf-cxx py-tpot
ace netcdf-cxx4 py-tqdm
ack netcdf-fortran py-traceback2
acl netdata py-traitlets
acpica-tools netgauge py-traits
acpid netgen py-traitsui
activeharmony netkit-ftp py-transformers
activemq netlib-lapack py-treehash
acts netlib-scalapack py-tuiview
addrwatch netlib-xblas py-twine
adept-utils netperf py-twisted
adf nettle py-typed-ast
adiak neuron py-typesentry
adios newt py-typing
adios2 nextflow py-typing-extensions
adlbx nfft py-tzlocal
admixtools nfs-ganesha py-ucx-py
adol-c nfs-utils py-ujson
advancecomp nghttp2 py-umalqurra
adwaita-icon-theme nginx py-umi-tools
aegean ngmerge py-uncertainties
aeskeyfind ngmlr py-unicycler
aespipe ngspice py-unidecode
agrep nicstat py-unittest2
aida nim py-unittest2py3k
akantu ninja py-update-checker
alan ninja-fortran py-uproot4
albany nix py-uritemplate
albert njet py-urllib3
alglib nlcglib py-urwid
allpaths-lg nlohmann-json py-us
alluxio nlohmann-json-schema-validator py-usgs
alps nlopt py-utils
alquimia nmap py-uvloop
alsa-lib nn-c py-uvw
aluminum nnvm py-uwsgi
ambari node-js py-vcf-kit
amber notmuch py-vcstool
amdblis npb py-vcstools
amdfftw npm py-vcversioner
amdlibflame npth py-vermin
amdlibm nrm py-versioneer
amdscalapack ns-3-dev py-vine
amg nseg py-virtualenv
amg2013 nsimd py-virtualenv-clone
amgx nspr py-virtualenvwrapper
aml ntirpc py-visdom
amp ntpoly py-voluptuous
ampliconnoise numactl py-vsc-base
amrex numamma py-vsc-install
amrvis numap py-vsts
anaconda2 numdiff py-vsts-cd-manager
anaconda3 nut py-walinuxagent
andi nvdimmsim py-wand
angsd nvhpc py-wandb
ant nvptx-tools py-warlock
antimony nvtop py-wasabi
antlr nwchem py-watchdog
ants nyancat py-wcsaxes
aocc ocaml py-wcwidth
aoflagger occa py-weave
aom oce py-webencodings
aomp oci-systemd-hook py-webkit-server
apachetop ocl-icd py-weblogo
apcomp oclgrind py-websocket-client
ape oclint py-websockets
aperture-photometry oclock py-werkzeug
apex octave py-whatshap
apple-libunwind octave-optim py-wheel
apple-libuuid octave-splines py-whichcraft
applewmproto octave-struct py-widgetsnbextension
appres octopus py-workload-automation
apr of-catalyst py-wradlib
apr-util of-precice py-wrapt
aragorn omega-h py-wstool
arbor ompss py-wub
arborx ompt-openmp py-wxmplot
archer onednn py-wxpython
argobots oniguruma py-xarray
argon2 ont-albacore py-xattr
argp-standalone opa-psm2 py-xdot
argtable opam py-xenv
aria2 opari2 py-xlrd
arm open-iscsi py-xlsxwriter
arm-forge open-isns py-xlwt
armadillo openbabel py-xmlrunner
arpack-ng openblas py-xmltodict
arrayfire opencascade py-xopen
arrow opencl-c-headers py-xpyb
asagi opencl-clhpp py-xvfbwrapper
ascent opencl-headers py-yahmm
asciidoc opencoarrays py-yajl
asciidoc-py3 opencv py-yamlreader
asdcplib opendx py-yapf
asdf-cxx openexr py-yarl
aspa openfast py-yolk3k
aspcud openfdtd py-youtube-dl
aspect openfoam py-yt
aspell openfoam-org py-ytopt
aspell6-de openfst py-zarr
aspell6-en opengl py-zc-buildout
aspell6-es openglu py-zc-lockfile
aspera-cli openimageio py-zict
assimp openipmi py-zipp
astra openjdk py-zope-event
astral openjpeg py-zope-interface
astyle openkim-models py-zxcvbn
at-spi2-atk openldap pythia6
at-spi2-core openloops pythia8
atf openmc python
athena openmm q-e-sirius
atk openmolcas qbank
atlas openmpi qbox
atmi openmx qca
atom-dft opennurbs qcachegrind
atompaw openpa qd
atop openpbs qemu
attr openpmd-api qgis
audacious openresty qgraf
audacity openscenegraph qhull
audit-userspace openslide qjson
augustus openslp qmcpack
authd openspeedshop qmd-progress
authselect openspeedshop-utils qnnpack
autoconf openssh qorts
autoconf-archive openssl qperf
autodock-gpu openstf qrupdate
autodock-vina opensubdiv qscintilla
autofact opentsdb qt
autogen openvslam qt-creator
automaded openwsman qtgraph
automake opium qthreads
avizo optional-lite qtkeychain
aws-parallelcluster optipng quantum-espresso
awscli opus quartz
axel orbit2 quicksilver
axl orc quinoa
axom orca quota
babelflow orfm qwt
babeltrace orientdb qwtpolar
backupninja orthofiller r
bam-readcount orthofinder r-a4
bamaddrg orthomcl r-a4base
bamdst osi r-a4classif
bamtools osmctools r-a4core
bamutil osqp r-a4preproc
bannergrab ossp-uuid r-a4reporting
barrnap osu-micro-benchmarks r-abadata
bart otf r-abaenrichment
bash otf2 r-abind
bash-completion p11-kit r-absseq
bashtop p3dfft3 r-acde
bat p4est r-acepack
batctl p7zip r-acgh
bats pacbio-daligner r-acme
bazel pacbio-damasker r-ada
bbcp pacbio-dazz-db r-adabag
bbmap pacbio-dextractor r-ade4
bc packmol r-adegenet
bcache pacvim r-adegraphics
bcftools pagit r-adephylo
bcl2fastq2 pagmo r-adespatial
bdftopcf pal r-adgoftest
bdii paml r-adsplit
bdw-gc panda r-aer
beagle pandaseq r-affxparser
beakerlib pandoc r-affy
bear pango r-affycomp
beast-tracer pangolin r-affycompatible
beast1 pangomm r-affycontam
beast2 papi r-affycoretools
bedops papyrus r-affydata
bedtools2 paradiseo r-affyexpress
beforelight parallel r-affyilm
benchmark parallel-netcdf r-affyio
berkeley-db parallelio r-affypdnn
bertini parallelmergetree r-affyplm
bgpdump paraver r-affyqcreport
bib2xhtml paraview r-affyrnadegradation
bigreqsproto parmetis r-agdex
bind9 parmgridgen r-agilp
binutils parquet-cpp r-agimicrorna
bioawk parquet-format r-aims
biobambam2 parsec r-aldex2
biobloom parsimonator r-allelicimbalance
biopieces parsplice r-alpine
bird partitionfinder r-als
bismark pasta r-alsace
bison patch r-altcdfenvs
bitlbee patchelf r-amap
bitmap patchutils r-ampliqueso
bitsery pathfinder r-analysispageserver
blaspp pax-utils r-anaquin
blasr pbbam r-aneufinder
blasr-libcpp pbmpi r-aneufinderdata
blast-legacy pbsuite r-animation
blast-plus pciutils r-annaffy
blast2go pcl r-annotate
blat pcma r-annotationdbi
blaze pcre r-annotationfilter
blis pcre2 r-annotationforge
bliss pdf2svg r-annotationhub
blitz pdftk r-aod
blktrace pdsh r-ape
blogbench pdt r-argparse
blt pegtl r-aroma-light
bmake pennant r-askpass
bmi percept r-assertthat
bml percona-server r-backports
bohrium perfstubs r-bamsignals
boinc-client perl r-base64
bolt perl-acme-damn r-base64enc
bonniepp perl-algorithm-diff r-bayesm
bookleaf-cpp perl-alien-build r-bbmisc
boost perl-alien-libxml2 r-beachmat
boostmplcartesianproduct perl-app-cmd r-beanplot
botan perl-array-utils r-beeswarm
bowtie perl-b-hooks-endofscope r-bfast
bowtie2 perl-bio-searchio-hmmer r-bfastspatial
boxlib perl-bioperl r-bglr
bpp-core perl-bit-vector r-bh
bpp-phyl perl-cairo r-biasedurn
bpp-phyl-omics perl-capture-tiny r-bibtex
bpp-seq perl-carp-clan r-bigalgebra
bpp-seq-omics perl-cgi r-bigmemory
bpp-suite perl-class-data-inheritable r-bigmemory-sri
bracken perl-class-inspector r-bindr
braker perl-class-load r-bindrcpp
branson perl-class-load-xs r-bio3d
breakdancer perl-clone r-biobase
bref3 perl-clone-choose r-biocfilecache
breseq perl-compress-raw-bzip2 r-biocgenerics
bridger perl-compress-raw-zlib r-biocinstaller
brigand perl-config-general r-biocmanager
brltty perl-contextual-return r-biocneighbors
brotli perl-cpan-meta-check r-biocparallel
brpc perl-data-dumper r-biocsingular
bsseeker2 perl-data-optlist r-biocstyle
bubblewrap perl-data-stag r-biom-utils
bucky perl-date-manip r-biomart
buddy perl-db-file r-biomartr
bumpversion perl-dbd-mysql r-biomformat
busco perl-dbd-pg r-biostrings
busybox perl-dbd-sqlite r-biovizbase
butter perl-dbi r-bit
butterflypack perl-devel-cycle r-bit64
bwa perl-devel-globaldestruction r-bitops
bwtool perl-devel-overloadinfo r-blob
byacc perl-devel-stacktrace r-blockmodeling
byobu perl-devel-symdump r-bmp
byte-unixbench perl-digest-md5 r-bookdown
byteman perl-dist-checkconflicts r-boot
bzip2 perl-encode-locale r-boruta
c perl-error r-brew
c-ares perl-eval-closure r-broom
c-blosc perl-exception-class r-bsgenome
c-blosc2 perl-exporter-tiny r-bsgenome-hsapiens-ucsc-hg19
c-lime perl-extutils-config r-bsseq
cabana perl-extutils-depends r-bumphunter
cachefilesd perl-extutils-helpers r-c50
caffe perl-extutils-installpaths r-cairo
cairo perl-extutils-makemaker r-callr
cairomm perl-extutils-pkgconfig r-car
caliper perl-ffi-checklib r-caracas
callpath perl-file-chdir r-cardata
camellia perl-file-copy-recursive r-caret
camp perl-file-homedir r-caroline
camx perl-file-listing r-category
canal perl-file-pushd r-catools
candle-benchmarks perl-file-sharedir-install r-cdcfluview
cantera perl-file-slurp r-cellranger
canu perl-file-slurp-tiny r-checkmate
cap3 perl-file-slurper r-checkpoint
capnproto perl-file-which r-chemometrics
capstone perl-font-ttf r-chron
cardioid perl-forks r-circlize
care perl-gd r-class
casacore perl-gdgraph r-classint
cask perl-gdgraph-histogram r-cli
casper perl-gdtextutil r-clipr
cassandra perl-graph r-clisymbols
catalyst perl-graph-readwrite r-clue
catch2 perl-hash-merge r-cluster
cbc perl-html-parser r-clustergeneration
cbench perl-html-tagset r-clusterprofiler
cblas perl-http-cookies r-cner
cbtf perl-http-daemon r-coda
cbtf-argonavis perl-http-date r-codetools
cbtf-argonavis-gui perl-http-message r-codex
cbtf-krell perl-http-negotiate r-coin
cbtf-lanl perl-inline r-colorspace
cc65 perl-inline-c r-combinat
ccache perl-io-all r-commonmark
ccfits perl-io-compress r-complexheatmap
ccls perl-io-html r-compositions
ccs-qcd perl-io-prompt r-condop
cctools perl-io-sessiondata r-construct
cdbfasta perl-io-socket-ssl r-convevol
cdd perl-io-string r-copula
cddlib perl-io-stringy r-corhmm
cdecimal perl-io-tty r-corpcor
cdhit perl-ipc-run r-corrplot
cdo perl-json r-countrycode
ceed perl-libwww-perl r-covr
cereal perl-libxml-perl r-cowplot
ceres-solver perl-list-moreutils r-crayon
cfitsio perl-list-moreutils-xs r-crosstalk
cgal perl-log-log4perl r-crul
cgdb perl-logger-simple r-ctc
cgdcbxd perl-lwp-mediatypes r-cubature
cget perl-lwp-protocol-https r-cubist
cgl perl-mailtools r-curl
cgm perl-math-bezier r-dada2
cgns perl-math-cdf r-data-table
chai perl-math-cephes r-dbi
changa perl-math-matrixreal r-dbplyr
channelflow perl-math-round r-debugme
chapel perl-math-vecstat r-decipher
charliecloud perl-module-build r-delayedarray
charmpp perl-module-build-tiny r-delayedmatrixstats
chatterbug perl-module-implementation r-deldir
check perl-module-runtime r-dendextend
chgcentre perl-module-runtime-conflicts r-deoptim
chill perl-moose r-deoptimr
chlorop perl-mozilla-ca r-desc
chombo perl-mro-compat r-deseq
chrony perl-namespace-clean r-deseq2
chrpath perl-net-http r-desolve
cinch perl-net-scp-expect r-devtools
circos perl-net-ssleay r-diagrammer
cistem perl-number-format r-dicekriging
citcoms perl-object-insideout r-dichromat
cityhash perl-package-deprecationmanager r-diffusionmap
ck perl-package-stash r-digest
clamav perl-package-stash-xs r-diptest
clamr perl-padwalker r-dirichletmultinomial
clapack perl-parallel-forkmanager r-dismo
clara perl-params-util r-diversitree
claw perl-params-validate r-dnacopy
cleaveland4 perl-parse-recdescent r-do-db
cleverleaf perl-path-tiny r-domc
clfft perl-pdf-api2 r-doparallel
clhep perl-pegex r-dorng
cli11 perl-perl-unsafe-signals r-dose
clinfo perl-perl-version r-dosnow
clingo perl-perl4-corelibs r-dotcall64
cln perl-perl6-slurp r-downloader
cloc perl-perlio-gzip r-dplyr
cloog perl-perlio-utf8-strict r-dqrng
cloverleaf perl-readonly r-dss
cloverleaf3d perl-regexp-common r-dt
clp perl-scalar-list-utils r-dtw
clustal-omega perl-scalar-util-numeric r-dygraphs
clustalw perl-set-intervaltree r-dynamictreecut
cmake perl-set-intspan r-e1071
cmaq perl-set-scalar r-earth
cmark perl-soap-lite r-ecp
cminpack perl-star-fusion r-edger
cmocka perl-statistics-basic r-ellipse
cmockery perl-statistics-descriptive r-ellipsis
cmor perl-statistics-pca r-emmli
cnmem perl-sub-exporter r-energy
cnpy perl-sub-exporter-progressive r-enrichplot
cntk perl-sub-identify r-ensembldb
cntk1bitsgd perl-sub-install r-envstats
cnvnator perl-sub-name r-ergm
codar-cheetah perl-sub-uplevel r-europepmc
code-server perl-svg r-evaluate
codec2 perl-swissknife r-evd
codes perl-sys-sigaction r-exactextractr
coevp perl-task-weaken r-exomecopy
cohmm perl-term-readline-gnu r-exomedepth
coin3d perl-termreadkey r-expint
coinhsl perl-test-cleannamespaces r-expm
coinutils perl-test-deep r-factoextra
collectd perl-test-differences r-factominer
collier perl-test-exception r-fansi
colm perl-test-fatal r-farver
colordiff perl-test-memory-cycle r-fastcluster
comd perl-test-most r-fastmatch
comgr perl-test-needs r-fdb-infiniummethylation-hg18
commons-lang perl-test-requires r-fdb-infiniummethylation-hg19
commons-lang3 perl-test-requiresinternet r-ff
commons-logging perl-test-warn r-fftwtools
compiz perl-test-warnings r-fgsea
compositeproto perl-text-csv r-fields
conda4aarch64 perl-text-diff r-filehash
conduit perl-text-format r-findpython
connect-proxy perl-text-simpletable r-fit-models
conserver perl-text-soundex r-fitdistrplus
console-bridge perl-text-unidecode r-flashclust
constype perl-time-hires r-flexclust
consul perl-time-piece r-flexmix
converge perl-timedate r-fnn
corenlp perl-try-tiny r-forcats
coreutils perl-uri r-foreach
corset perl-want r-forecast
cosbench perl-www-robotrules r-foreign
cosma perl-xml-dom r-formatr
cosmoflow-benchmark perl-xml-dom-xpath r-formula
cosmomc perl-xml-filter-buffertext r-fpc
cosp2 perl-xml-libxml r-fracdiff
cotter perl-xml-libxslt r-fs
couchdb perl-xml-namespacesupport r-futile-logger
cowsay perl-xml-parser r-futile-options
cp2k perl-xml-parser-lite r-future
cpio perl-xml-quote r-future-apply
cpp-httplib perl-xml-regexp r-gamlss
cppad perl-xml-sax r-gamlss-data
cppcheck perl-xml-sax-base r-gamlss-dist
cppgsl perl-xml-sax-writer r-gbm
cpprestsdk perl-xml-simple r-gbrd
cppunit perl-xml-twig r-gcrma
cppzmq perl-xml-writer r-gdalutils
cpu-features perl-xml-xpathengine r-gdata
cpuinfo perl-yaml r-gdsfmt
cquery perl-yaml-libyaml r-geiger
cracklib pestpp r-genefilter
cradl petsc r-genelendatabase
cram pexsi r-genemeta
cray-fftw pfapack r-geneplotter
cray-libsci pfft r-generics
cray-mpich pflask r-genetics
cromwell pflotran r-genie3
cromwell-womtool pfunit r-genomeinfodb
cronie pgdspider r-genomeinfodbdata
cryptopp pgi r-genomicalignments
cryptsetup phantompeakqualtools r-genomicfeatures
csa-c phast r-genomicranges
cscope phasta r-gensa
csdp phist r-geomorph
ctffind phoenix r-geonames
ctpl photos r-geoquery
ctre php r-geor
cub phrap-crossmatch-swat r-geosphere
cube phred r-getopt
cubelib phylip r-getoptlong
cubew phylobayesmpi r-ggally
cubist phyluce r-ggbeeswarm
cuda picard r-ggbio
cuda-memtest picsar r-ggdendro
cudnn picsarlite r-ggforce
cufflinks pidx r-ggjoy
cunit pig r-ggmap
cups pigz r-ggplot2
curl pilon r-ggplotify
cusz pindel r-ggpubr
cvs pinentry r-ggraph
cxx pinfo r-ggrepel
cxxopts pipework r-ggridges
cyrus-sasl piranha r-ggsci
czmq pism r-ggsignif
dakota pixman r-ggvis
daligner pixz r-gh
dalton pkg-config r-gistr
damageproto pkgconf r-git2r
damaris pktools r-glimma
damselfly planck-likelihood r-glmnet
darshan-runtime plasma r-globaloptions
darshan-util platypus r-globals
dash plink r-glue
datamash plink-ng r-gmodels
dataspaces plplot r-gmp
datatransferkit plumed r-go-db
date ply r-goftest
dateutils pmdk r-gofuncr
davix pmerge r-googlevis
dbcsr pmgr-collective r-goplot
dbow2 pmix r-gosemsim
dbus pmlib r-goseq
dbus-glib pnfft r-gostats
dbxtool pngquant r-gower
dcap pngwriter r-gplots
dcmtk pnmpi r-graph
dd4hep poamsa r-graphlayouts
ddd pocl r-grbase
dealii podio r-gridbase
dealii-parameter-gui polymake r-gridextra
debbuild poplddecay r-gridgraphics
decentralized-internet poppler r-gsa
deconseq-standalone poppler-data r-gsalib
dejagnu popt r-gseabase
delly2 porta r-gsl
delphes portage r-gsodr
delta portcullis r-gss
denovogear postgis r-gstat
dftbplus postgresql r-gsubfn
dftd3-lib povray r-gtable
dftfe powerapi r-gtools
dhpmm-f powertop r-gtrellis
dhtest ppl r-gviz
dia pplacer r-gwmodel
dialign ppopen-appl-amr-fdm r-haven
dialign-tx ppopen-appl-bem r-hdf5array
diamond ppopen-appl-bem-at r-hdf5r
diffmark ppopen-appl-dem-util r-hexbin
diffsplice ppopen-appl-fdm r-hh
diffutils ppopen-appl-fdm-at r-highr
dihydrogen ppopen-appl-fem r-hmisc
dimemas ppopen-appl-fvm r-hms
ding-libs ppopen-at r-hoardr
dire ppopen-math-mp r-htmltable
direnv ppopen-math-vis r-htmltools
discovar prank r-htmlwidgets
discovardenovo precice r-httpcode
disktype predixy r-httpuv
dislin premake-core r-httr
distcc presentproto r-hwriter
diy preseq r-hypergraph
dlib presto r-ica
dlpack price r-igraph
dmd primer3 r-illuminahumanmethylation450kanno-ilmn12-hg19
dmidecode prinseq-lite r-illuminaio
dmlc-core printproto r-imager
dmtcp prism r-impute
dmxproto prmon r-influencer
dnsmap prng r-ini
dnsmasq probconsrna r-inline
dnstop procenv r-interactivedisplaybase
dnstracer procps r-intervals
docbook-xml procps-ng r-inum
docbook-xsl prodigal r-ipred
dock profugusmc r-iranges
dos2unix proj r-irdisplay
dosfstools prokka r-irkernel
dotconf prometheus r-irlba
dotnet-core-sdk protobuf r-isdparser
double-conversion protobuf-c r-iso
doxygen proxymngr r-iterators
dpdk prrte r-janitor
draco pruners-ninja r-jaspar2018
dracut ps-lite r-jomo
dramsim2 psi4 r-jpeg
dray pslib r-jsonlite
dri2proto psm r-kegg-db
dri3proto psmc r-kegggraph
drill pstreams r-keggrest
dropwatch pugixml r-kernlab
druid pulseaudio r-kernsmooth
ds pumi r-kknn
dsdp pv r-knitr
dsqss pvm r-ks
dsrc pxz r-labeling
dssp py-3to2 r-lambda-r
dtcmp py-4suite-xml r-laplacesdemon
duperemove py-abipy r-lars
dyninst py-absl-py r-later
dysco py-accimage r-lattice
e2fsprogs py-acme-tiny r-latticeextra
ea-utils py-adal r-lava
eagle py-adb-enhanced r-lazyeval
earlyoom py-addict r-ldheatmap
easybuild py-adios r-leaflet
ebms py-advancedhtmlparser r-leaps
eccodes py-aenum r-learnbayes
ecdsautils py-affine r-leiden
ecflow py-agate r-lfe
eclipse-gcj-parser py-agate-dbf r-lhs
ecos py-agate-excel r-libcoin
ecp-data-vis-sdk py-agate-sql r-lifecycle
ecp-proxy-apps py-aiofiles r-limma
ed py-aiohttp r-listenv
editline py-aiohttp-cors r-lme4
editres py-aioredis r-lmtest
edm4hep py-alabaster r-locfit
eem py-alembic r-log4r
efivar py-altgraph r-loo
eigen py-amqp r-lpsolve
elasticsearch py-angel r-lsei
elemental py-ansible r-lubridate
elfutils py-antlr4-python3-runtime r-lumi
elk py-anuga r-magic
elmerfem py-apache-beam r-magick
elpa py-apache-libcloud r-magrittr
elsd py-apex r-makecdfenv
elsdc py-apipkg r-maldiquant
elsi py-appdirs r-manipulatewidget
emacs py-applicationinsights r-mapplots
ember py-appnope r-mapproj
emboss py-apptools r-maps
embree py-apscheduler r-maptools
enca py-archspec r-markdown
enchant py-argcomplete r-mass
energyplus py-argon2-cffi r-matlab
entrezdirect py-argparse r-matr
entt py-args r-matrix
environment-modules py-arrow r-matrixmodels
eospac py-arviz r-matrixstats
eq-r py-asciitree r-mclust
er py-asdf r-mcmcglmm
erfa py-ase r-mco
erlang py-asgiref r-mda
ermod py-asn1crypto r-memoise
erne py-aspy-yaml r-mergemaid
es-shell py-asserts r-metap
esmf py-asteval r-methylumi
espanso py-astor r-mgcv
essl py-astpretty r-mgraster
etcd py-astroid r-mice
ethminer py-astropy r-mime
ethtool py-astropy-healpix r-minfi
etsf-io py-astropy-helpers r-miniui
evemu py-astunparse r-minqa
everytrace py-async-generator r-misc3d
everytrace-example py-async-timeout r-mitml
evieext py-asyncio r-mitools
evtgen py-atomicwrites r-mixtools
exa py-atropos r-mlbench
exabayes py-attrs r-mlinterfaces
examinimd py-audioread r-mlr
examl py-autograd r-mlrmbo
exampm py-autograd-gamma r-mmwrweek
exasp2 py-autopep8 r-mnormt
exciting py-auxlib r-modelmetrics
exiv2 py-avro r-modelr
exmcutils py-avro-json-serializer r-modeltools
exodusii py-avro-python3 r-mpm
exonerate py-awesome-slugify r-msnbase
exonerate-gff3 py-awkward1 r-multcomp
expat py-azote r-multicool
expect py-azure-batch r-multitaper
express py-azure-cli r-multtest
extrae py-azure-cli-command-modules-nspkg r-munsell
exuberant-ctags py-azure-cli-core r-mvtnorm
eztrace py-azure-cli-nspkg r-mzid
f2c py-azure-cli-telemetry r-mzr
f77-zmq py-azure-common r-nanotime
f90cache py-azure-core r-ncbit
fabtests py-azure-cosmos r-ncdf4
fairlogger py-azure-datalake-store r-network
faiss py-azure-functions-devops-build r-networkd3
fakechroot py-azure-graphrbac r-nimble
fakexrandr py-azure-identity r-nleqslv
falcon py-azure-keyvault r-nlme
fann py-azure-keyvault-certificates r-nloptr
faodel py-azure-keyvault-keys r-nmf
fast-global-file-status py-azure-keyvault-nspkg r-nmof
fasta py-azure-keyvault-secrets r-nnet
fastdb py-azure-loganalytics r-nnls
fastdfs py-azure-mgmt-advisor r-nor1mix
fastjar py-azure-mgmt-apimanagement r-nortest
fastjet py-azure-mgmt-appconfiguration r-np
fastjson py-azure-mgmt-applicationinsights r-npsurv
fastmath py-azure-mgmt-authorization r-numderiv
fastme py-azure-mgmt-batch r-oligoclasses
fastp py-azure-mgmt-batchai r-openssl
fastphase py-azure-mgmt-billing r-openxlsx
fastq-screen py-azure-mgmt-botservice r-optparse
fastqc py-azure-mgmt-cdn r-ordinal
fastqvalidator py-azure-mgmt-cognitiveservices r-org-hs-eg-db
fasttext py-azure-mgmt-compute r-organismdbi
fasttransforms py-azure-mgmt-consumption r-packrat
fasttree py-azure-mgmt-containerinstance r-pacman
fastx-toolkit py-azure-mgmt-containerregistry r-paleotree
faust py-azure-mgmt-containerservice r-pamr
fca py-azure-mgmt-core r-pan
fcgi py-azure-mgmt-cosmosdb r-parallelmap
fd-find py-azure-mgmt-datalake-analytics r-paramhelpers
fdupes py-azure-mgmt-datalake-store r-party
feh py-azure-mgmt-datamigration r-partykit
fenics py-azure-mgmt-deploymentmanager r-pathview
fenics-dolfinx py-azure-mgmt-devtestlabs r-pbapply
feq-parse py-azure-mgmt-dns r-pbdzmq
fermi py-azure-mgmt-eventgrid r-pbkrtest
fermikit py-azure-mgmt-eventhub r-pcamethods
fermisciencetools py-azure-mgmt-hdinsight r-pcapp
ferret py-azure-mgmt-imagebuilder r-permute
ffb py-azure-mgmt-iotcentral r-pfam-db
ffmpeg py-azure-mgmt-iothub r-phangorn
ffr py-azure-mgmt-iothubprovisioningservices r-phantompeakqualtools
ffsb py-azure-mgmt-keyvault r-philentropy
fftw py-azure-mgmt-kusto r-phylobase
fgsl py-azure-mgmt-loganalytics r-phyloseq
figlet py-azure-mgmt-managedservices r-phylostratr
figtree py-azure-mgmt-managementgroups r-phytools
file py-azure-mgmt-maps r-picante
filebench py-azure-mgmt-marketplaceordering r-pillar
filo py-azure-mgmt-media r-pixmap
filtlong py-azure-mgmt-monitor r-pkgbuild
fimpute py-azure-mgmt-msi r-pkgconfig
find-circ py-azure-mgmt-netapp r-pkgload
findbugs py-azure-mgmt-network r-pkgmaker
findutils py-azure-mgmt-nspkg r-plogr
fio py-azure-mgmt-policyinsights r-plot3d
fipscheck py-azure-mgmt-privatedns r-plotly
fish py-azure-mgmt-rdbms r-plotmo
fixesproto py-azure-mgmt-recoveryservices r-plotrix
fj py-azure-mgmt-recoveryservicesbackup r-pls
fjcontrib py-azure-mgmt-redhatopenshift r-plyr
fl py-azure-mgmt-redis r-pmcmr
flac py-azure-mgmt-relay r-png
flann py-azure-mgmt-reservations r-polspline
flash py-azure-mgmt-resource r-polyclip
flatbuffers py-azure-mgmt-search r-polynom
flatcc py-azure-mgmt-security r-popgenome
flcl py-azure-mgmt-servicebus r-popvar
flecsale py-azure-mgmt-servicefabric r-powerlaw
flecsi py-azure-mgmt-signalr r-prabclus
flecsph py-azure-mgmt-sql r-praise
flex py-azure-mgmt-sqlvirtualmachine r-preprocesscore
flexi py-azure-mgmt-storage r-prettyunits
flexiblas py-azure-mgmt-trafficmanager r-processx
flibcpp py-azure-mgmt-web r-prodlim
flink py-azure-multiapi-storage r-progress
flint py-azure-nspkg r-proj
flit py-azure-storage-common r-proj4
fltk py-azure-storage-nspkg r-promises
flume py-azureml-automl-core r-protgenerics
flux-core py-azureml-core r-proto
flux-sched py-azureml-dataprep r-proxy
fluxbox py-azureml-dataprep-native r-pryr
fmt py-azureml-dataset-runtime r-ps
foam-extend py-azureml-pipeline r-pscbs
folly py-azureml-pipeline-core r-pspline
font-util py-azureml-pipeline-steps r-psych
fontcacheproto py-azureml-sdk r-ptw
fontconfig py-azureml-telemetry r-purrr
fontsproto py-azureml-train r-qtl
fonttosfnt py-azureml-train-automl-client r-quadprog
form py-azureml-train-core r-quantmod
fortran py-azureml-train-restclients-hyperdrive r-quantreg
fortrilinos py-babel r-quantro
foundationdb py-backcall r-qvalue
fox py-backports-abc r-r-cache
fp16 py-backports-functools-lru-cache r-r-methodss3
fpc py-backports-lzma r-r-oo
fping py-backports-shutil-get-terminal-size r-r-utils
fpocket py-backports-ssl-match-hostname r-r6
fqtrim py-backports-tempfile r-randomfields
fr-hit py-backports-weakref r-randomfieldsutils
fraggenescan py-basemap r-randomforest
freebayes py-basis-set-exchange r-randomglm
freeglut py-bcbio-gff r-ranger
freeimage py-bcolz r-rann
freeipmi py-bcrypt r-rappdirs
freetype py-beautifulsoup4 r-raster
freexl py-billiard r-rbgl
fribidi py-binaryornot r-rbokeh
frontistr py-bintrees r-rcmdcheck
fseq py-binwalk r-rcolorbrewer
fsl py-biom-format r-rcpp
fslsfonts py-biomine r-rcppannoy
fstobdf py-biopandas r-rcpparmadillo
fstrack py-biopython r-rcppblaze
ftgl py-bitarray r-rcppcctz
fujitsu-fftw py-bitstring r-rcppcnpy
fujitsu-mpi py-black r-rcppeigen
fujitsu-ssl2 py-bleach r-rcpphnsw
funhpc py-blessed r-rcppparallel
fuse-overlayfs py-blessings r-rcppprogress
fyba py-blinker r-rcurl
fzf py-blis r-rda
g2o py-blosc r-rdpack
g4abla py-bmap-tools r-readbitmap
g4emlow py-bokeh r-readr
g4ensdfstate py-boltons r-readxl
g4incl py-boom-boot-manager r-recipes
g4ndl py-boto r-registry
g4neutronxs py-boto3 r-rematch
g4particlexs py-botocore r-rematch2
g4photonevaporation py-bottle r-remotes
g4pii py-bottleneck r-reordercluster
g4radioactivedecay py-breakseq2 r-reportingtools
g4realsurface py-breathe r-repr
g4saiddata py-brian r-reprex
g4tendl py-brian2 r-reshape
gamess-ri-mp2-miniapp py-brotlipy r-reshape2
gams py-bsddb3 r-reticulate
ganglia py-bx-python r-rex
gapbs py-bz2file r-rferns
gapcloser py-cached-property r-rgdal
gapfiller py-cachetools r-rgenoud
gasnet py-cairocffi r-rgeos
gate py-cantoolz r-rgexf
gatepet2stir py-cartopy r-rgl
gatk py-catalogue r-rgooglemaps
gaudi py-catkin-pkg r-rgraphviz
gaussian py-cclib r-rhdf5
gaussian-src py-cdat-lite r-rhdf5lib
gaussian-view py-cdo r-rhmmer
gawk py-cdsapi r-rhtslib
gblocks py-cekit r-rinside
gcc py-celery r-rio
gccmakedep py-certifi r-rjags
gccxml py-certipy r-rjava
gconf py-cf-units r-rjson
gcta py-cffi r-rjsonio
gdal py-cfgv r-rlang
gdb py-cftime r-rle
gdbm py-chai r-rmariadb
gdk-pixbuf py-chainer r-rmarkdown
gdl py-chainmap r-rminer
gdrcopy py-chalice r-rmpfr
geant4 py-chardet r-rmpi
geant4-data py-charm4py r-rms
geant4-vmc py-checkm-genome r-rmutil
gearshifft py-cheetah r-rmysql
gemmlowp py-cheroot r-rnaseqmap
genemark-et py-cherrypy r-rncl
genfit py-chronyk r-rnexml
gengetopt py-cinema-lib r-rngtools
genomefinisher py-cinemasci r-rnoaa
genometools py-click r-robust
genomeworks py-click-didyoumean r-robustbase
genrich py-click-plugins r-roc
geode py-click-repl r-rocr
geoip py-cligj r-rodbc
geoip-api-c py-clint r-rook
geopm py-clipboard r-rots
geos py-cloudpickle r-roxygen2
gettext py-clustershell r-rpart
gflags py-cmake r-rpart-plot
ghost py-cmake-format r-rpostgresql
ghostscript py-cmocean r-rprojroot
ghostscript-fonts py-cnvkit r-rrblup
giflib py-coapthon3 r-rrcov
ginac py-codecov r-rrpp
ginkgo py-cogent r-rsamtools
giraph py-coilmq r-rsnns
git py-colorama r-rsolnp
git-fat-git py-coloredlogs r-rspectra
git-imerge py-colorful r-rsqlite
git-lfs py-colorlog r-rstan
gitconddb py-colormath r-rstantools
gl2ps py-colorpy r-rstudioapi
glew py-colorspacious r-rsvd
glfmultiples py-commonmark r-rtracklayer
glfw py-configargparse r-rtsne
glib py-configobj r-runit
glib-networking py-configparser r-rvcheck
glibmm py-contextily r-rversions
glimmer py-contextlib2 r-rvest
glm py-contextvars r-rzmq
global py-convertdate r-s4vectors
globalarrays py-cookiecutter r-samr
glog py-counter r-sandwich
gloo py-cov-core r-scales
glpk py-coverage r-scater
glproto py-cppheaderparser r-scatterplot3d
glusterfs py-crcmod r-scrime
glvis py-crispresso r-sctransform
gmake py-crossmap r-sdmtools
gmap-gsnap py-cryptography r-segmented
gmime py-cssselect r-selectr
gmodel py-csvkit r-seqinr
gmp py-cudf r-seqlogo
gmsh py-cuml r-sessioninfo
gmt py-cupy r-seurat
gmtsar py-current r-sf
gnat py-cutadapt r-sfsmisc
gnome-common py-cvxopt r-shape
gnupg py-cvxpy r-shiny
gnuplot py-cycler r-shinydashboard
gnuradio py-cymem r-shinyfiles
gnutls py-cyordereddict r-shortread
go py-cython r-siggenes
go-bootstrap py-cyvcf2 r-simpleaffy
go-md2man py-d2to1 r-singlecellexperiment
gobject-introspection py-dadi r-sitmo
goblin-hmc-sim py-dask r-sm
googletest py-dataclasses r-smoof
gosam-contrib py-dateparser r-sn
gotcha py-dbf r-snakecase
gource py-dbfread r-snow
gpdb py-deap r-snowfall
gperf py-decorator r-snprelate
gperftools py-deeptools r-snpstats
gpgme py-deeptoolsintervals r-som
gpi-2 py-defusedxml r-somaticsignatures
gplates py-dendropy r-sourcetools
gprolog py-deprecated r-sp
gpu-burn py-deprecation r-spacetime
gqrx py-descartes r-spam
gr-osmosdr py-devlib r-sparsem
grabix py-dgl r-spatial
grackle py-dill r-spatialeco
gradle py-discover r-spatialpack
grads py-diskcache r-spatialreg
grafana py-distributed r-spatstat
grandr py-distro r-spatstat-data
graph500 py-django r-spatstat-utils
graphblast py-dlcpar r-spdata
graphicsmagick py-dnaio r-spdep
graphite2 py-docker r-speedglm
graphlib py-dockerpy-creds r-spem
graphmap py-docopt r-splancs
graphviz py-docutils r-splitstackshape
grass py-docutils-stubs r-sqldf
graylog2-server py-dominate r-squarem
grep py-dotnetcore2 r-squash
grib-api py-doxypy r-sseq
gridlab-d py-doxypypy r-stabledist
grnboost py-dp-gp-cluster r-stanheaders
groff py-drmaa r-stargazer
gromacs py-dryscrape r-statmod
grpc py-dxchange r-statnet-common
gsettings-desktop-schemas py-dxfile r-stringi
gsl py-earthengine-api r-stringr
gslib py-easybuild-easyblocks r-strucchange
gtk-doc py-easybuild-easyconfigs r-subplex
gtkmm py-easybuild-framework r-summarizedexperiment
gtkorvo-atl py-ecdsa r-suppdists
gtkorvo-cercs-env py-ecos r-survey
gtkorvo-dill py-edffile r-survival
gtkorvo-enet py-editdistance r-sva
gtkplus py-eg r-sys
gtksourceview py-elasticsearch r-tarifx
gts py-elephant r-taxizedb
guacamole-client py-emcee r-tclust
guacamole-server py-empy r-teachingdemos
guidance py-entrypoints r-tensor
guile py-enum34 r-tensora
gunrock py-envisage r-testit
gurobi py-ephem r-testthat
gzip py-epydoc r-tfbstools
h2database py-espresso r-tfmpvalue
h5cpp py-espressopp r-th-data
h5hut py-et-xmlfile r-threejs
h5part py-eventlet r-tibble
h5utils py-execnet r-tidycensus
h5z-zfp py-exodus-bundler r-tidygraph
hacckernels py-extension-helpers r-tidyr
hackrf-host py-extras r-tidyselect
hadoop py-ez-setup r-tidyverse
hal py-fabric r-tiff
halc py-falcon r-tigris
half py-fallocate r-timedate
hama py-fastaindex r-tinytex
hapcut2 py-fastavro r-tmixclust
hapdip py-fastcache r-topgo
haploview py-fastcluster r-triebeard
haproxy py-fastdtw r-trimcluster
hardlink py-fasteners r-truncdist
harfbuzz py-fastrlock r-truncnorm
harminv py-faststructure r-trust
hashcat py-fenics-dijitso r-tseries
hazelcast py-fenics-dolfinx r-tsne
hbase py-fenics-ffcx r-ttr
hbm-dramsim2 py-fenics-fiat r-tweenr
hc py-fenics-ufl r-txdb-hsapiens-ucsc-hg18-knowngene
hcol py-filelock r-txdb-hsapiens-ucsc-hg19-knowngene
hcoll py-filemagic r-tximport
hdf py-fiona r-tximportdata
hdf-eos2 py-fiscalyear r-ucminf
hdf-eos5 py-fisher r-udunits2
hdf5 py-fits-tools r-units
hdf5-blosc py-fixtures r-upsetr
hdfview py-flake8 r-urca
healpix-cxx py-flake8-import-order r-urltools
heaptrack py-flake8-polyfill r-usethis
heffte py-flask r-utf8
helics py-flask-compress r-uuid
help2man py-flask-socketio r-uwot
henson py-flexx r-v8
hepmc py-flye r-variantannotation
hepmc3 py-fn-py r-varselrf
hepmcanalysis py-fortran-language-server r-vcd
heppdt py-fortranformat r-vctrs
heputils py-fparser r-vegan
hercules py-fprettify r-vfs
herwig3 py-freezegun r-vgam
herwigpp py-fsspec r-vioplot
hibench py-funcsigs r-vipor
hic-pro py-functools32 r-viridis
hicolor-icon-theme py-fusepy r-viridislite
highfive py-future r-visnetwork
highwayhash py-futures r-vsn
hiop py-fypp r-watermelon
hip py-gast r-webshot
hip-rocclr py-gcovr r-wgcna
hipblas py-gdbgui r-whisker
hipcub py-gdc-client r-withr
hipfort py-gee-asset-manager r-xde
hipify-clang py-geeadd r-xfun
hipsparse py-geeup r-xgboost
hipsycl py-gemini r-xlconnect
hiredis py-genders r-xlconnectjars
hisat2 py-geneimpacts r-xlsx
hisea py-genshi r-xlsxjars
hive py-gensim r-xmapbridge
hmmer py-geoalchemy2 r-xml
homer py-geographiclib r-xml2
hoomd-blue py-geopandas r-xnomial
hotspot py-geoplot r-xopen
hpcc py-geopy r-xtable
hpccg py-gevent r-xts
hpcg py-gf256 r-xvector
hpctoolkit py-git-review r-yaimpute
hpcviewer py-gitdb r-yaml
hpgmg py-gitpython r-yapsa
hping py-gluoncv r-yaqcaffy
hpl py-gnuplot r-yarn
hpx py-goatools r-zeallot
hpx5 py-google r-zip
hsa-rocr-dev py-google-api-core r-zlibbioc
hsakmt py-google-api-python-client r-zoo
hsakmt-roct py-google-auth r3d
hsf-cmaketools py-google-auth-httplib2 rabbitmq
hssp py-google-auth-oauthlib racon
hstr py-google-cloud-core raft
htop py-google-cloud-storage ragel
htslib py-google-pasta raja
http-get py-google-resumable-media ramulator
http-load py-googleapis-common-protos randfold
http-parser py-googledrivedownloader random123
http-ping py-gosam randrproto
http-post py-gpaw range-v3
httpd py-gpustat rankstr
httperf py-gputil rapidjson
httpie py-gpy rasdaemon
httping py-gpytorch ravel
httpress py-gql raxml
hub py-graphql-core raxml-ng
hudi py-graphviz ray
hugo py-greenlet rccl
hunspell py-grequests rclone
hwloc py-griddataformats rdc
hybpiper py-grpcio rdma-core
hybrid-lambda py-gsd rdp-classifier
hybridsim py-gsi rdptools
hydra py-guidata re2
hydrogen py-guiqwt re2c
hyperscan py-h11 readfq
hyphy py-h2 readline
hypre py-h5glance recon
i3 py-h5py recorder
ibm-databroker py-h5sh recordproto
ibm-java py-hacking redis
ibmisc py-hatchet reditools
icarus py-hdbscan redset
iceauth py-hdfs redundans
icedtea py-healpy reframe
icet py-heapdict regcm
ico py-hepdata-validator relax
icu4c py-hepunits relion
id3lib py-hieroglyph remhos
idba py-hiredis rempi
idl py-holland-backup rename
iegenlib py-horovod rendercheck
ignite py-hpack renderproto
igraph py-hpcbench repeatmasker
igv py-hpccm repeatmodeler
igvtools py-hstspreload repeatscout
ilmbase py-html2text resourceproto
imagemagick py-html5lib revbayes
imake py-htmlgen revocap-coupler
imlib2 py-htseq revocap-refiner
imp py-httpbin rgb
impute2 py-httpcore rhash
infernal py-httplib2 rinetd
influxdb py-httptools ripgrep
iniparser py-httpx rivet
inputproto py-humanfriendly rlwrap
intel py-humanize rmats
intel-daal py-hvac rmlab
intel-gpu-tools py-hyperframe rna-seqc
intel-ipp py-hypothesis rnaz
intel-llvm py-ics rng-tools
intel-mkl py-identify rngstreams
intel-mpi py-idna rocalution
intel-mpi-benchmarks py-idna-ssl rocblas
intel-oneapi-ccl py-illumina-utils rocfft
intel-oneapi-compilers py-imageio rocketmq
intel-oneapi-dal py-imagesize rocksdb
intel-oneapi-dnn py-iminuit rockstar
intel-oneapi-ipp py-immutables rocm-bandwidth-test
intel-oneapi-ippcp py-importlib rocm-clang-ocl
intel-oneapi-mkl py-importlib-metadata rocm-cmake
intel-oneapi-mpi py-importlib-resources rocm-dbgapi
intel-oneapi-tbb py-inference-schema rocm-debug-agent
intel-oneapi-vpl py-inheritance rocm-device-libs
intel-parallel-studio py-iniparse rocm-gdb
intel-pin py-intervaltree rocm-opencl
intel-tbb py-invoke rocm-openmp-extras
intel-xed py-ipaddress rocm-smi
interproscan py-ipdb rocm-smi-lib
intltool py-ipykernel rocm-tensile
ioapi py-ipyparallel rocm-validation-suite
ior py-ipython rocminfo
iozone py-ipython-cluster-helper rocprim
ipcalc py-ipython-genutils rocprofiler-dev
iperf2 py-ipywidgets rocrand
iperf3 py-irpf90 rocsolver
ipopt py-isodate rocsparse
iproute2 py-isort rocthrust
iq-tree py-itsdangerous roctracer-dev
isaac py-jaraco-functools rodinia
isaac-server py-javaproperties root
isc-dhcp py-jdatetime rose
isescan py-jdcal ross
isl py-jedi routino
iso-codes py-jeepney rpcsvc-proto
ispc py-jellyfish rr
istio py-jinja2 rrdtool
itk py-jinja2-time rsbench
itstool py-jmespath rsem
itsx py-joblib rstart
iwyu py-jplephem rsync
jackcess py-jprops rsyslog
jafka py-jpype1 rt-tests
jags py-jsmin rtags
jali py-json-get rtax
jansi py-json5 ruby
jansi-native py-jsondiff ruby-asciidoctor
jansson py-jsonpatch ruby-erubis
jasper py-jsonpickle ruby-gnuplot
jbigkit py-jsonpointer ruby-hpricot
jblob py-jsonref ruby-mustache
jchronoss py-jsonschema ruby-narray
jdk py-junit-xml ruby-rake
jellyfish py-jupyter ruby-rdiscount
jemalloc py-jupyter-client ruby-ronn
jetty-project py-jupyter-console ruby-rubyinline
jhpcn-df py-jupyter-core ruby-svn2git
jimtcl py-jupyterhub ruby-terminal-table
jline3 py-jupyterlab ruby-thor
jmol py-jupyterlab-pygments ruby-tmuxinator
jose py-jupyterlab-server ruby-unicode-display-width
jpegoptim py-keras ruby-xdg
jq py-keras-applications ruby-zentest
json-c py-keras-preprocessing rust
json-cwx py-kerberos rust-bindgen
json-fortran py-kitchen sabre
json-glib py-kiwisolver saga-gis
jsoncpp py-kmodes sailfish
jstorm py-knack salmon
jube py-kombu salmon-tddft
judy py-labours sambamba
julea py-lark-parser samblaster
julia py-latexcodec samrai
junit4 py-lazy samtools
k8 py-lazy-object-proxy sandbox
kafka py-lazy-property satsuma2
kahip py-lazyarray savanna
kaiju py-leather saws
kaks-calculator py-libconf sblim-sfcc
kaldi py-libensemble sbml
kallisto py-librosa sbt
karma py-lifelines scala
kassiopeia py-ligo-segments scalasca
kbd py-line-profiler scallop
kbproto py-linecache2 scalpel
kcov py-lit scan-for-matches
kdiff3 py-llvmlite scantailor
kea py-lmfit scipoptsuite
kealib py-lmodule scons
keepalived py-localcider scorec-core
kentutils py-locket scorep
keyutils py-lockfile scotch
kibana py-logilab-common scr
kicad py-louie screen
kim-api py-lru-dict scripts
kinesis py-lscsoft-glue scrnsaverproto
kitty py-luigi scs
kmergenie py-lxml sctk
kmod py-lz4 sdl2
knem py-lzstring sdl2-image
kokkos py-m2r sdsl-lite
kokkos-kernels py-macholib seacas
kokkos-kernels-legacy py-machotools sed
kokkos-legacy py-macs2 sensei
kokkos-nvcc-wrapper py-maestrowf sentencepiece
kraken py-magic sentieon-genomics
kraken2 py-mako seqan
krb5 py-mapclassify seqkit
krims py-markdown seqprep
kripke py-markovify seqtk
kubernetes py-markupsafe serf
kvasir-mpl py-matplotlib sessreg
kvtree py-mayavi setserial
kylin py-mccabe setxkbmap
ladot py-mdanalysis sfcgal
laghos py-mechanize sga
lame py-memory-profiler sgpp
lammps py-mercantile shadow
lapackpp py-merlin shapeit
last py-metasv shapeit4
lastz py-methylcode shapelib
laszip py-mg-rast-tools shared-mime-info
latte py-mido shark
launchmon py-mikado shc
lazyten py-minrpc shengbte
lbann py-misopy shiny-server
lbxproxy py-mistune shiro
lbzip2 py-mixedhtseq shocklibs
lcals py-mlperf-logging shoremap
lcio py-mlxtend shortbred
lcms py-mmcv shortstack
lcov py-mmtf-python showfont
ldak py-mo-pack shtools
ldc py-mock shuffile
ldc-bootstrap py-modred sickle
legion py-moltemplate siesta
lemon py-monotonic signalp
leptonica py-monty signify
less py-more-itertools silo
lesstif py-mpi4py simde
leveldb py-mpld3 simgrid
lftp py-mpmath simmetrix-simmodsuite
lhapdf py-msal simplemoc
lhapdf5 py-msal-extensions simul
libaec py-msgpack simulationio
libaio py-msrest singularity
libapplewm py-msrestazure singularity-legacy
libarchive py-multi-key-dict sio
libassuan py-multidict sionlib
libatasmart py-multipledispatch sirius
libatomic-ops py-multiprocess skilion-onedrive
libbacktrace py-multiqc skopeo
libbeagle py-munch sl
libbeato py-murmurhash slang
libbinio py-mx slate
libbsd py-myhdl sleef
libbson py-mypy slepc
libbytesize py-mypy-extensions slf4j
libc py-mysql-connector-python slider
libcanberra py-mysqlclient sloccount
libcap py-mysqldb1 slurm
libcap-ng py-natsort smalt
libceed py-nbclient smartdenovo
libcerf py-nbconvert smartmontools
libcgroup py-nbformat smof
libcint py-nc-time-axis smproxy
libcircle py-ndg-httpsclient snakemake
libconfig py-neo snap
libconfuse py-neobolt snap-berkeley
libcroco py-neotime snap-korf
libctl py-nest-asyncio snappy
libcudf py-nestle snbone
libcuml py-netcdf4 sniffles
libcumlprims py-netifaces snpeff
libdaemon py-netket snphylo
libdap4 py-networkit snptest
libdatrie py-networkx soapdenovo-trans
libdivsufsort py-nltk soapdenovo2
libdmx py-nodeenv soci
libdrm py-nose sofa-c
libdwarf py-nose-cov sollve
libeatmydata py-nose2 solr
libedit py-nosexcover somatic-sniper
libelf py-notebook sonlib
libemos py-numba sortmerna
libepoxy py-numcodecs sosflow
libestr py-numexpr source-highlight
libev py-numexpr3 sowing
libevdev py-numpy sox
libevent py-numpydoc spades
libevpath py-nvidia-ml-py span-lite
libexif py-nvidia-ml-py3 spark
libfabric py-oauth2client sparse
libfastcommon py-oauthlib sparsehash
libfastjson py-olefile sparta
libffi py-onnx spath
libffs py-ont-fast5-api spdlog
libfive py-opencensus spectrum-mpi
libflame py-opencensus-context speex
libfontenc py-openpmd-validator speexdsp
libfs py-openpyxl spfft
libfuse py-openslide-python spglib
libgcrypt py-opentuner sph2pipe
libgd py-opppy spherepack
libgeotiff py-opt-einsum spindle
libgff py-or-tools spiral
libgit2 py-ordereddict spla
libgpg-error py-oset spm
libgpuarray py-osqp spot
libgridxc py-overpy sprng
libgssglue py-owslib sqlcipher
libgtextutils py-packaging sqlite
libharu py-palettable sqlite-jdbc
libhbaapi py-pamela sqlitebrowser
libhio py-pandas sqoop
libhugetlbfs py-pandocfilters squashfs
libiberty py-parameterized squid
libibumad py-paramiko sratoolkit
libical py-paramz sse2neon
libice py-parse sshpass
libiconv py-parsedatetime ssht
libid3tag py-parso ssmtp
libidl py-partd sspace-longread
libidn2 py-particle sspace-standard
libimagequant py-path-py sst-core
libimobiledevice py-pathlib sst-dumpi
libint py-pathlib2 sst-elements
libisal py-pathos sst-macro
libiscsi py-pathspec sst-transports
libjpeg py-patsy stacks
libjpeg-turbo py-pauvre staden-io-lib
libjson py-pbr star
libjwt py-pem star-ccm-plus
libkcapi py-pep8 startup-notification
libkml py-pep8-naming stat
libksba py-performance stata
liblas py-periodictable static-analysis-suite
liblbxutil py-petastorm stc
liblockfile py-petsc4py steps
libluv py-pexpect stinger
libmad py-phonopy storm
libmatheval py-pickleshare stow
libmaus2 py-picrust strace
libmaxminddb py-picrust2 stream
libmesh py-pid strelka
libmetalink py-pil stress
libmicrohttpd py-pillow string-view-lite
libmmtf-cpp py-pillow-simd stringtie
libmng py-pint structure
libmnl py-pip strumpack
libmo-unpack py-pipits su2
libmodbus py-pispino sublime-text
libmonitor py-pkgconfig subread
libnbc py-pkginfo subversion
libnet py-plac suite-sparse
libnetfilter-conntrack py-planar sumaclust
libnetworkit py-planet sumo
libnfnetlink py-plotly sundials
libnftnl py-pluggy superlu
libnl py-ply superlu-dist
libnotify py-pmw superlu-mt
libnova py-pomegranate supernova
libnrm py-portalocker sw4lite
libnsl py-portend swap-assembler
libogg py-poster swarm
liboldx py-pox swfft
libopts py-poyo swftools
libp11 py-ppft swiftsim
libpam py-pre-commit swig
libpaper py-preshed swipl
libpcap py-prettytable symengine
libpciaccess py-profilehooks symlinks
libpeas py-progress sympol
libpfm4 py-progressbar2 sysbench
libpipeline py-projectq syscalc
libplist py-prometheus-client sysfsutils
libpmemobj-cpp py-prompt-toolkit sysget
libpng py-protobuf sysstat
libproxy py-psutil systemtap
libpsl py-psyclone sz
libpthread-stubs py-psycopg2 tabix
libqglviewer py-ptyprocess tajo
libquo py-pudb talass
librdkafka py-pure-eval talloc
librelp py-pure-sasl tangram
librmm py-py tantan
librom py-py-cpuinfo tar
librsb py-py-spy targetp
librsvg py-py2bit task
librtlsdr py-py2cairo taskd
libsamplerate py-py2neo taskflow
libseccomp py-py4j tasmanian
libsecret py-py6s tassel
libsharp py-pyamg tau
libshm py-pyani tauola
libsigcpp py-pyarrow tbl2asn
libsigsegv py-pyasn1 tcl
libsm py-pyasn1-modules tcl-itcl
libsndfile py-pybedtools tcl-tcllib
libsodium py-pybigwig tcl-tclxml
libspatialindex py-pybind11 tclap
libspatialite py-pybtex tcoffee
libspiro py-pybtex-docutils tcpdump
libsplash py-pycairo tcptrace
libssh py-pycares tcsh
libssh2 py-pycbc tdengine
libsvm py-pychecker tealeaf
libszip py-pycifrw teckit
libtar py-pycmd tecplot
libtasn1 py-pycodestyle tempestremap
libtermkey py-pycosat templight
libthai py-pycparser templight-tools
libtheora py-pycrypto tengine
libtiff py-pycuda tensorflow-serving-client
libtirpc py-pycurl termcap
libtlx py-pydatalog tesseract
libtomlc99 py-pydeps testdfsio
libtommath py-pydispatcher tetgen
libtool py-pydmd tethex
libtree py-pydot texinfo
libuecc py-pydot2 texlive
libunistring py-pydotplus texstudio
libunwind py-pydv textparser
libusb py-pyeda tfel
libusbmuxd py-pyelftools the-platinum-searcher
libuser py-pyepsg the-silver-searcher
libuuid py-pyface thepeg
libuv py-pyfaidx thornado-mini
libvdwxc py-pyfasta thrift
libverto py-pyfftw thrust
libvips py-pyfiglet tig
libvorbis py-pyfits time
libvori py-pyflakes timedatex
libvterm py-pygdal timemory
libwebp py-pygdbmi tinker
libwebsockets py-pygelf tinyxml
libwindowswm py-pygeos tinyxml2
libx11 py-pygit2 tioga
libxau py-pyglet tippecanoe
libxaw py-pygments tiptop
libxaw3d py-pygments-pytest tix
libxc py-pygobject tixi
libxcb py-pygps tk
libxcomposite py-pygpu tldd
libxcrypt py-pygresql tmalign
libxcursor py-pygtk tmhmm
libxdamage py-pyheadtail tmux
libxdmcp py-pyinstrument tomcat
libxevie py-pyinstrument-cext tophat
libxext py-pyjwt totalview
libxfixes py-pyke tpm2-tss
libxfont py-pykml tppred
libxfont2 py-pykwalify tracer
libxfontcache py-pyliblzma transabyss
libxft py-pylikwid transdecoder
libxi py-pylint transposome
libxinerama py-pylops transrate
libxkbcommon py-pymatgen transset
libxkbfile py-pymc3 trapproto
libxkbui py-pymeeus tree
libxml2 py-pyminifier treelite
libxmu py-pymol treesub
libxp py-pymongo trf
libxpm py-pymorph triangle
libxpresent py-pympler trident
libxprintapputil py-pymysql trilinos
libxprintutil py-pynacl trilinos-catalyst-ioss-adapter
libxrandr py-pynio trimal
libxrender py-pynn trimgalore
libxres py-pynvml trimmomatic
libxscrnsaver py-pyodbc trinity
libxshmfence py-pyomo trinotate
libxslt py-pyopencl trnascan-se
libxsmm py-pyopenssl tskit
libxstream py-pypar tulip
libxt py-pyparsing turbine
libxtrap py-pypeflow turbomole
libxtst py-pypeg2 turnserver
libxv py-pyperclip tut
libxvmc py-pyperf twm
libxxf86dga py-pyprecice tycho2
libxxf86misc py-pyprof2html typhon
libxxf86vm py-pyproj typhonio
libyaml py-pyqi uchardet
libyogrt py-pyqt4 ucx
libzip py-pyqt5 udunits
libzmq py-pyquaternion ufo-core
liggghts py-pyrad ufo-filters
lighttpd py-pyrosar umap
ligra py-pyrsistent umoci
likwid py-pysam umpire
linkphase3 py-pyscaf unblur
linktest py-pyscf uncrustify
linsys-v py-pyserial unibilium
linux-headers py-pyshp unifdef
linux-pam py-pyside unifyfs
lis py-pyside2 unison
listres py-pysmartdl units
lizard py-pysocks unittest-cpp
lksctp-tools py-pysolar universal-ctags
llvm py-pyspark unixodbc
llvm-amdgpu py-pysqlite unqlite
llvm-doe py-pytailf unrar
llvm-openmp py-pytest unuran
llvm-openmp-ompt py-pytest-cache unzip
lm-sensors py-pytest-check-links upcxx
lmbench py-pytest-cov uqtk
lmdb py-pytest-flake8 uriparser
lmod py-pytest-forked usbutils
lndir py-pytest-httpbin usearch
log4c py-pytest-isort userspace-rcu
log4cplus py-pytest-mock utf8proc
log4cpp py-pytest-mypy util-linux
log4cxx py-pytest-pep8 util-linux-uuid
logrotate py-pytest-runner util-macros
logstash py-pytest-xdist uvw
loki py-python-daemon valgrind
looptools py-python-dateutil vampirtrace
lordec py-python-docs-theme vardictjava
lrslib py-python-editor variorum
lrzip py-python-engineio varnish-cache
lsf py-python-fmask varscan
lshw py-python-gitlab vasp
lsof py-python-igraph vbfnlo
lsscsi py-python-jenkins vc
ltp py-python-json-logger vcftools
ltr-retriever py-python-ldap vcsh
ltrace py-python-levenshtein vdt
lua py-python-logstash veccore
lua-bitlib py-python-lzo vecgeom
lua-lpeg py-python-magic veclibfort
lua-luafilesystem py-python-mapnik vegas2
lua-luajit py-python-meep veloc
lua-luaposix py-python-memcached velvet
lua-mpack py-python-oauth2 velvetoptimiser
lucene py-python-rapidjson verilator
luit py-python-slugify verrou
lulesh py-python-socketio vesta
lumpy-sv py-python-subunit vgm
lustre py-python-swiftclient videoproto
lvarray py-python-utils viennarna
lvm2 py-pythonqwt viewres
lwgrp py-pytimeparse vifi
lwm2 py-pytools vigra
lxc py-pytorch-gradual-warmup-lr vim
lynx py-pytz virtualgl
lz4 py-pyudev visit
lzma py-pyugrid vizglow
lzo py-pyutilib vmatch
lzop py-pyvcf vmc
m4 py-pywavelets vmd
macsio py-pywcs volk
mad-numdiff py-pyyaml voropp
madgraph5amc py-pyzmq votca-csg
mafft py-qsymm votca-csg-tutorials
magics py-qtawesome votca-csgapps
magma py-qtconsole votca-ctp
mahout py-qtpy votca-tools
makedepend py-quantities votca-xtp
maker py-quast vpfft
mallocmc py-queryablelist vpic
maloc py-radical-utils vsearch
man-db py-ranger-fm vsftpd
manta py-rasterio vt
mapnik py-ratelim vtable-dumper
mapserver py-raven vtk
maq py-ray vtk-h
margo py-rbtools vtk-m
mariadb py-rdflib vvtest
mariadb-c-client py-readme-renderer wannier90
mark py-recommonmark warpx
masa py-redis watch
masurca py-regex wayland
mathematica py-reportlab wcs
matio py-repoze-lru wcslib
matlab py-reproject webbench
maven py-requests weechat
maverick py-requests-futures weighttp
mawk py-requests-mock wget
mbdyn py-requests-oauthlib wgsim
mbedtls py-requests-toolbelt which
mc py-resampy whizard
mcl py-restview windowswmproto
mcpp py-resultsfile wireshark
mcutils py-retrying wonton
mdtest py-rfc3986 wordnet
med py-rios workrave
meep py-rise wps
mefit py-rmm wrf
megadock py-rnacocktail wrk
megahit py-robotframework wsmancli
memaxes py-rope wt
memcached py-rosdep wtdbg2
meme py-rosdistro wxpropgrid
memkind py-rosinstall wxwidgets
memsurfer py-rosinstall-generator x11perf
memtester py-rospkg xabclib
meraculous py-rpy2 xapian-core
mercurial py-rq xauth
mercury py-rsa xbacklight
mesa py-rseqc xbiff
mesa-demos py-rtree xbitmaps
mesa-glu py-ruamel-ordereddict xbraid
mesa18 py-ruamel-yaml xcalc
meshkit py-ruamel-yaml-clib xcb-demo
meson py-s3cmd xcb-proto
mesquite py-s3transfer xcb-util
metabat py-sacremoses xcb-util-cursor
metall py-saga-python xcb-util-errors
metaphysicl py-sanic xcb-util-image
metis py-scandir xcb-util-keysyms
mfem py-scientificpython xcb-util-renderutil
mg py-scikit-build xcb-util-wm
mgis py-scikit-fmm xcb-util-xrm
microbiomeutil py-scikit-image xcfun
migraphx py-scikit-learn xclip
migrate py-scikit-optimize xclipboard
mii py-scipy xclock
minced py-scoop xcmiscproto
mindthegap py-scp xcmsdb
miniaero py-scs xcompmgr
miniamr py-seaborn xconsole
miniasm py-secretstorage xcursor-themes
miniconda2 py-selenium xcursorgen
miniconda3 py-semantic-version xdbedizzy
minife py-semver xdelta
miniforge3 py-send2trash xditview
minigan py-sentencepiece xdm
minighost py-sentry-sdk xdmf3
minigmg py-seriate xdotool
minimap2 py-setproctitle xdpyinfo
minimd py-setuptools xdriinfo
minio py-setuptools-git xedit
miniqmc py-setuptools-rust xerces-c
minisign py-setuptools-scm xeus
minismac2d py-setuptools-scm-git-archive xev
minitri py-sfepy xextproto
minivite py-sgp4 xeyes
minixyce py-sh xf86bigfontproto
minizip py-shapely xf86dga
minuit py-shiboken xf86dgaproto
miopen-hip py-shortuuid xf86driproto
miopen-opencl py-shroud xf86miscproto
miopengemm py-simplegeneric xf86rushproto
mira py-simplejson xf86vidmodeproto
miranda py-simplekml xfd
mirdeep2 py-singledispatch xfindproxy
mitofates py-sip xfontsel
mitos py-six xfs
mivisionx py-slepc4py xfsdump
mixcr py-slurm-pipeline xfsinfo
mkfontdir py-smart-open xfsprogs
mkfontscale py-smmap xfwp
mlhka py-snappy xgamma
mlocate py-sncosmo xgboost
mlperf-deepcam py-sniffio xgc
mmg py-snowballstemmer xhmm
moab py-snuggs xhost
modern-wheel py-sonlib xineramaproto
modylas py-sortedcontainers xinit
mofem-cephas py-soundfile xinput
mofem-fracture-module py-soupsieve xios
mofem-minimal-surface-equation py-spacy xkbcomp
mofem-users-modules py-spacy-models-en-core-web-sm xkbdata
mokutil py-spacy-models-en-vectors-web-lg xkbevd
molcas py-sparse xkbprint
molden py-spatialist xkbutils
mongo-c-driver py-spatialite xkeyboard-config
mongo-cxx-driver py-spdlog xkill
mongodb-async-driver py-spectra xlc
mono py-spefile xlf
montage py-spgl1 xload
moosefs py-spglib xlogo
moreutils py-sphinx xlsatoms
mosh py-sphinx-bootstrap-theme xlsclients
mothur py-sphinx-copybutton xlsfonts
motif py-sphinx-gallery xmag
motioncor2 py-sphinx-rtd-theme xman
mount-point-attributes py-sphinxautomodapi xmessage
mozjs py-sphinxcontrib-applehelp xmh
mpark-variant py-sphinxcontrib-bibtex xmlf90
mpc py-sphinxcontrib-devhelp xmlrpc-c
mpdecimal py-sphinxcontrib-htmlhelp xmlto
mpe2 py-sphinxcontrib-issuetracker xmodmap
mpest py-sphinxcontrib-jsmath xmore
mpfr py-sphinxcontrib-mermaid xorg-cf-files
mpi-bash py-sphinxcontrib-programoutput xorg-docs
mpich py-sphinxcontrib-qthelp xorg-gtest
mpifileutils py-sphinxcontrib-serializinghtml xorg-server
mpilander py-sphinxcontrib-trio xorg-sgml-doctools
mpileaks py-sphinxcontrib-websupport xphelloworld
mpip py-spyder xplor-nih
mpir py-spykeutils xplsprinters
mpix-launch-swift py-sqlalchemy xpmem
mpt py-sqlalchemy-utils xpr
mptensor py-sqlparse xprehashprinterlist
mrbayes py-srsly xprop
mrbench py-sshtunnel xproto
mrchem py-statsmodels xproxymanagementprotocol
mrcpp py-stdlib-list xqilla
mrnet py-stestr xrandr
mrtrix3 py-stevedore xrdb
mscgen py-stopit xrefresh
msgpack-c py-storm xrootd
mshadow py-stratify xrx
msmc py-stsci-distutils xsbench
msmc2 py-subprocess32 xscope
mstk py-subrosa xsd
mt-metis py-svgpathtools xsdk
multitail py-svgwrite xsdk-examples
multitime py-symengine xsdktrilinos
multiverso py-symfit xset
mumax py-sympy xsetmode
mummer py-syned xsetpointer
mummer4 py-systemd-python xsetroot
mumps py-tables xsimd
munge py-tabulate xsm
muparser py-tap-py xstdcmap
muscle py-tatsu xtensor
muse py-tblib xtensor-python
musl py-tempora xterm
muster py-tensorboard xtl
mutationpp py-tensorboard-plugin-wit xtrans
mvapich2 py-tensorboardx xtrap
mvapich2-gdr py-tensorflow xts
mvapich2x py-tensorflow-estimator xvidtune
mxm py-termcolor xvinfo
mxml py-terminado xwd
mxnet py-testfixtures xwininfo
mysql py-testinfra xwud
nacos py-testpath xxhash
nag py-testrepository xz
nalu py-testresources yajl
nalu-wind py-testscenarios yambo
namd py-testtools yaml-cpp
nano py-tetoolkit yara
nanoflann py-text-unidecode yarn
nanomsg py-textblob yasm
nanopb py-texttable ycsb
nasm py-tfdlpack yoda
nauty py-theano yorick
nbdkit py-thinc z-checker
ncbi-magicblast py-thirdorder z3
ncbi-rmblastn py-threadpoolctl zabbix
ncbi-toolkit py-tifffile zfp
nccl py-tinyarray zfs
nccl-tests py-tokenizers zip
nccmp py-toml zipkin
ncdu py-tomlkit zlib
ncftp py-tomopy zoltan
ncl py-toolz zookeeper
nco py-torch zookeeper-benchmark
ncompress py-torch-cluster zsh
ncurses py-torch-geometric zstd
ncview py-torch-nvidia-apex zziplib
ndiff py-torch-scatter None

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
8.10.3, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Link Dependencies:
blas, lapack, mpi, scalapack, fftw, netcdf-fortran, hdf5, libxc, wannier90
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.1.4, 2.0.2, 1.5.2
Build Dependencies:
autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
master, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Link Dependencies:
cuda, boost, dd4hep, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 0.9.2, 0.9.1
Build Dependencies:
exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0, xsdk-0.2.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
cuda, cmake, mpi, nccl, hwloc, cub, ninja
Link Dependencies:
cuda, mpi, nccl, hwloc, cub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
18.20, 18.19, 16.16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. Note: The version number is composed of the Amber version (major) and the tools version (minor). A manual download is required for both Amber and Amber tools. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

amdblis

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
blas
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
master, 20201104
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
develop, master, 0.1.0
Build Dependencies:
numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Link Dependencies:
blas, lapack, boost, petsc, trilinos, hdf5, silo, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind. AMP can be used to build powerful and flexible multi-physics simulation algorithms from lightweight operator, solver, linear algebra, material database, discretization, and meshing components. The AMP design is meant to enable existing investments in application codes to be leveraged without having to adopt dramatically different data structures while developing new computational science applications. Application components are represented as discrete mathematical operators that only require a minimal interface and through operator composition the incremental development of complex parallel applications is enabled. AMP is meant to allow application domain scientists, computer scientists and mathematicians to simulate, collaborate, and conduct research on various aspects of massively parallel simulation algorithms.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amrex

Homepage:
Spack package:
Versions:
develop, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, rocrand
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : http://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, mesa18, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
mesa18, elfutils, libffi
Run Dependencies:
py-wheel, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, rocm-gdb
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake, binutils, boost, activeharmony, ompt-openmp
Link Dependencies:
binutils, boost, activeharmony, ompt-openmp
Description:
Autonomic Performance Environment for eXascale (APEX).

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
0.4, 0.2
Build Dependencies:
cmake, cuda, mpi, libunwind, python, py-mpi4py, py-sphinx
Link Dependencies:
cuda, mpi, libunwind
Run Dependencies:
python, py-mpi4py
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.0
Build Dependencies:
m4, autoconf, automake, libtool, valgrind
Link Dependencies:
valgrind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

argtable

Homepage:
Spack package:
Versions:
2-13
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
20.2.1
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
19.0.4-19.0.4-Ubuntu-16.04-x86_64, 19.0.4-Ubuntu-16.04-aarch64, 19.0.4-Ubuntu-14.04-x86_64, 19.0.4-Suse-15-x86_64, 19.0.4-Suse-12-x86_64, 19.0.4-Suse-12-aarch64, 19.0.4-Suse-11-x86_64, 19.0.4-Redhat-7.4-aarch64, 19.0.4-Redhat-7.2-ppc64le, 19.0.4-Redhat-7.0-x86_64, 19.0.4-Redhat-6.0-x86_64, 19.0.3-Ubuntu-16.04-x86_64, 19.0.3-Ubuntu-16.04-aarch64, 19.0.3-Ubuntu-14.04-x86_64, 19.0.3-Suse-12-x86_64, 19.0.3-Suse-12-aarch64, 19.0.3-Suse-11-x86_64, 19.0.3-Redhat-7.4-aarch64, 19.0.3-Redhat-7.2-ppc64le, 19.0.3-Redhat-7.0-x86_64, 19.0.3-Redhat-6.0-x86_64
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.3, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, adios, dray
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
8.6.9
Build Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl
Link Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.0.3, 9.0.2
Build Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
4.0.1
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake
Link Dependencies:
comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl
Run Dependencies:
perl
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.69, 2.62, 2.59, 2.13
Build Dependencies:
m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.16.1
Build Dependencies:
m4, autoconf, automake, libtool, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

bash

Homepage:
Spack package:
Versions:
5.0, 4.4, 4.3
Build Dependencies:
ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.0, 7.6.0, 7.4.4
Build Dependencies:
libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, python
Link Dependencies:
zlib
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Description:
Oracle Berkeley DB

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
autoconf, automake, libtool, m4, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
diffutils, m4, perl, help2man
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blaspp

Homepage:
Spack package:
Versions:
master, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
cuda, cmake, blas, openblas
Link Dependencies:
cuda, blas, openblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, zlib
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Description:
A Binary Decision Diagram library.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
master
Build Dependencies:
m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

cabana

Homepage:
Spack package:
Versions:
master, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, kokkos-legacy, kokkos, mpi
Link Dependencies:
kokkos-legacy, kokkos, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cmake, boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
boost, cuda, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
cairo, libsigcpp
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cmake, adiak, dyninst, papi, libpfm4, mpi, unwind, sosflow, python
Link Dependencies:
adiak, dyninst, papi, libpfm4, mpi, unwind, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.7.0
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0-alpha2, 4.0-alpha1, 3.11.6, 3.11.5
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ use case library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.0-preview3, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
rpcsvc-proto, libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elf, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
rpcsvc-proto, libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains the Krell Institute contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.3, 1.9.2, 1.9.1.2, 1.9.1.1, 1.9.1.0
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package:
Versions:
3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
gperf, libxslt, zlib
Link Dependencies:
gperf, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.5, 2.4
Build Dependencies:
cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccls

Homepage:
Spack package:
Versions:
0.20201025
Build Dependencies:
cmake, llvm, rapidjson
Link Dependencies:
llvm, rapidjson
Description:
C/C++ language server

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94h
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
1.9.9, 1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw, magics, uuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw, magics, uuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
3.0.0, 2.0.0, 1.0.0
Build Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
libceed, occa, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
3.49, 3.48, 3.47, 3.45, 3.42, 3.41, 3.37
Build Dependencies:
curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
0.7.0
Build Dependencies:
ncurses, readline
Link Dependencies:
ncurses, readline
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
autoconf, automake, libtool, m4, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cget

Homepage:
Spack package:
Versions:
0.1.9
Build Dependencies:
python, py-setuptools, py-six, py-click, py-subprocess32
Run Dependencies:
python, py-six, py-click, py-subprocess32
Description:
Cmake package retrieval.

cgl

Homepage:
Spack package:
Versions:
0.60.3
Build Dependencies:
coinutils, osi, clp
Link Dependencies:
coinutils, osi, clp
Description:
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chai

Homepage:
Spack package:
Versions:
develop, master, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, umpire, raja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, umpire, raja
Description:
Copy-hiding array interface for data migration between memory spaces

changa

Homepage:
Spack package:
Versions:
master, 3.4
Build Dependencies:
charmpp
Link Dependencies:
charmpp
Description:
ChaNGa (Charm N-body GrAvity solver) is a code to perform collisionless N-body simulations. It can perform cosmological simulations with periodic boundary conditions in comoving coordinates or simulations of isolated stellar systems. It also can include hydrodynamics using the Smooth Particle Hydrodynamics (SPH) technique. It uses a Barnes-Hut tree to calculate gravity, with hexadecapole expansion of nodes and Ewald summation for periodic forces. Timestepping is done with a leapfrog integrator with individual timesteps for each particle.

channelflow

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, eigen, fftw, mpi, hdf5, netcdf-c, boost
Link Dependencies:
eigen, fftw, mpi, hdf5, netcdf-c, boost
Description:
Channelflow is a software system for numerical analysis of the incompressible fluid flow in channel geometries, written in C++.

chapel

Homepage:
Spack package:
Versions:
1.20.0, 1.19.0, 1.18.0
Description:
Chapel is a modern programming language that is parallel, productive, portable, scalable and open-source.

charliecloud

Homepage:
Spack package:
Versions:
master, 0.21, 0.19, 0.18
Build Dependencies:
m4, autoconf, automake, libtool, rsync, py-sphinx, py-sphinx-rtd-theme
Run Dependencies:
python, py-lark-parser, py-requests
Test Dependencies:
bats
Description:
Lightweight user-defined software stacks for HPC.

charmpp

Homepage:
Spack package:
Versions:
master, 6.10.2, 6.10.1, 6.10.0, 6.9.0, 6.8.2, 6.8.1, 6.8.0, 6.7.1, 6.7.0, 6.6.1, 6.6.0, 6.5.1
Build Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Link Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Description:
Charm++ is a parallel programming framework in C++ supported by an adaptive runtime system, which enhances user productivity and allows programs to run portably from small multicore computers (your laptop) to the largest supercomputers.

chatterbug

Homepage:
Spack package:
Versions:
develop, 1.0
Build Dependencies:
mpi, scorep
Link Dependencies:
mpi, scorep
Description:
A suite of communication-intensive proxy applications that mimic commonly found communication patterns in HPC codes. These codes can be used as synthetic codes for benchmarking, or for trace generation using Score-P / OTF2.

check

Homepage:
Spack package:
Versions:
0.12.0, 0.11.0, 0.10.0
Description:
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

chgcentre

Homepage:
Spack package:
Versions:
1.6
Build Dependencies:
cmake, casacore, gsl
Link Dependencies:
casacore, gsl
Description:
The chgcentre tool can be used to change the phase centre of a measurement set.

chill

Homepage:
Spack package:
Versions:
master, 0.3
Build Dependencies:
boost, rose, autoconf, automake, libtool, m4, iegenlib, bison, flex, python, isl, gmp
Link Dependencies:
python
Run Dependencies:
rose, iegenlib
Description:
A polyheadral compiler for autotuning

chlorop

Homepage:
Spack package:
Versions:
1.1
Run Dependencies:
awk
Description:
Chlorop predicts the presence of chloroplast transit peptides in protein sequences and the location of potential cTP cleavage sites. You will need to obtain the tarball by visiting the URL and completing the form. You can then either run spack install with the tarball in the directory, or add it to a mirror. You will need to set the CHLOROTMP environment variable to the full path of the directory you want chlorop to use as a temporary directory.

chombo

Homepage:
Spack package:
Versions:
develop, 3.2
Build Dependencies:
blas, lapack, gmake, mpi, hdf5
Link Dependencies:
blas, lapack, mpi, hdf5
Description:
The Chombo package provides a set of tools for implementing finite difference and finite-volume methods for the solution of partial differential equations on block-structured adaptively refined logically rectangular (i.e. Cartesian) grids.

chrony

Homepage:
Spack package:
Versions:
3.5.1, 3.5, 3.4, 3.3
Build Dependencies:
ruby-asciidoctor
Link Dependencies:
ruby-asciidoctor
Description:
chrony is a versatile implementation of the Network Time Protocol (NTP). It can synchronise the system clock with NTP servers, reference clocks(e.g. GPS receiver), and manual input using wristwatch and keyboard.

chrpath

Homepage:
Spack package:
Versions:
0.16
Description:
chrpath: Modifies the dynamic library load path (rpath and runpath) of compiled programs and libraries.

cinch

Homepage:
Spack package:
Versions:
master, 1.0
Description:
Cinch is a set of utilities and configuration options designed to make cmake builds easy to use and manage.

cistem

Homepage:
Spack package:
Versions:
1.0.0-beta
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

citcoms

Homepage:
Spack package:
Versions:
master, 3.3.1, 3.2.0
Build Dependencies:
mpi, zlib, automake, autoconf, libtool, m4, hc, cuda, hdf5
Link Dependencies:
mpi, zlib, hc, cuda, hdf5
Run Dependencies:
python
Description:
CitcomS is a finite element code designed to solve compressible thermochemical convection problems relevant to Earth's mantle.

cityhash

Homepage:
Spack package:
Versions:
master, 2013-07-31
Description:
CityHash, a family of hash functions for strings.

ck

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
CK calculates class-level and metric-level code metrics in Java projects by means of static analysis (i.e. no need for compiled code).

clamav

Homepage:
Spack package:
Versions:
0.101.2
Build Dependencies:
pkgconfig, json-c, openssl, pcre, yara, zlib, bzip2
Link Dependencies:
json-c, openssl, pcre, yara, zlib, bzip2, curl
Description:
Open source antivirus engine for detecting trojans, viruses, malware & other malicious threats.

clamr

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, mpi, mpe
Link Dependencies:
mpi, mpe
Description:
The CLAMR code is a cell-based adaptive mesh refinement (AMR) mini-app developed as a testbed for hybrid algorithm development using MPI and OpenCL GPU code.

clapack

Homepage:
Spack package:
Versions:
3.2.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CLAPACK is a f2c'ed version of LAPACK. The CLAPACK library was built using a Fortran to C conversion utility called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain C code, and then modified to improve readability. CLAPACK's goal is to provide LAPACK for someone who does not have access to a Fortran compiler.

clara

Homepage:
Spack package:
Versions:
1.1.5, 1.1.4, 1.1.3, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
A simple to use, composable, command line parser for C++ 11 and beyond.

claw

Homepage:
Spack package:
Versions:
master, 2.0.2, 2.0.1, 2.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0
Build Dependencies:
cmake, ant, bison, flex, java, libxml2
Link Dependencies:
java, libxml2
Description:
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran. From a single source code, it generates architecture specific code decorated with OpenMP or OpenACC

cleaveland4

Homepage:
Spack package:
Versions:
4.4
Build Dependencies:
perl, perl-math-cdf, bowtie, viennarna, r, samtools
Link Dependencies:
bowtie, viennarna, samtools
Run Dependencies:
perl, perl-math-cdf, r
Description:
CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

cleverleaf

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, samrai, hdf5, boost
Link Dependencies:
samrai, hdf5, boost
Description:
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National Laboratory. The primary goal of CleverLeaf is to evaluate the application of AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.

clfft

Homepage:
Spack package:
Versions:
2.12.2
Build Dependencies:
cmake, opencl, boost
Link Dependencies:
opencl, boost
Description:
a software library containing FFT functions written in OpenCL

clhep

Homepage:
Spack package:
Versions:
2.4.4.0, 2.4.1.3, 2.4.1.2, 2.4.1.0, 2.4.0.4, 2.4.0.2, 2.4.0.1, 2.4.0.0, 2.3.4.6, 2.3.4.5, 2.3.4.4, 2.3.4.3, 2.3.4.2, 2.3.3.2, 2.3.3.1, 2.3.3.0, 2.3.2.2, 2.3.1.1, 2.3.1.0, 2.3.0.0, 2.2.0.8, 2.2.0.5, 2.2.0.4
Build Dependencies:
cmake
Description:
CLHEP is a C++ Class Library for High Energy Physics.

cli11

Homepage:
Spack package:
Versions:
1.9.1
Build Dependencies:
cmake
Description:
CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

clinfo

Homepage:
Spack package:
Versions:
2.2.18.04.06
Build Dependencies:
opencl
Link Dependencies:
opencl
Description:
Print all known information about all available OpenCL platforms and devices in the system.

clingo

Homepage:
Spack package:
Versions:
master, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python
Link Dependencies:
python
Run Dependencies:
python
Description:
Clingo: A grounder and solver for logic programs Clingo is part of the Potassco project for Answer Set Programming (ASP). ASP offers a simple and powerful modeling language to describe combinatorial problems as logic programs. The clingo system then takes such a logic program and computes answer sets representing solutions to the given problem.

cln

Homepage:
Spack package:
Versions:
master, 1.3.6, 1.3.5, 1.3.4, 1.3.3, 1.3.2, 1.3.1, 1.3.0, 1.2.2, 1.2.1, 1.2.0
Build Dependencies:
autoconf, automake, libtool, m4, gmp, texinfo, gettext
Link Dependencies:
gmp
Description:
CLN is a library for efficient computations with all kinds of numbers in arbitrary precision. It features number classes for unlimited length integers, rationals, arbitrary precision floating point numbers and much more.

cloc

Homepage:
Spack package:
Versions:
1.84, 1.80, 1.74
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Count, or compute differences of, physical lines of source code in the given files (may be archives such as compressed tarballs or zip files) and/or recursively below the given directories.

cloog

Homepage:
Spack package:
Versions:
0.18.1, 0.18.0, 0.17.0
Build Dependencies:
gmp, isl
Link Dependencies:
gmp, isl
Description:
CLooG is a free software and library to generate code for scanning Z-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that reaches each integral point of one or more parameterized polyhedra.

cloverleaf

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
mpi, cuda
Link Dependencies:
mpi, cuda
Description:
Proxy Application. CloverLeaf is a miniapp that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

cloverleaf3d

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CloverLeaf3D is 3D version of the CloverLeaf mini- app. CloverLeaf is a mini-app that solves the compressible Euler equations on a Cartesian grid, using an explicit, second-order accurate method.

clp

Homepage:
Spack package:
Versions:
1.17.6, 1.17.4, 1.16.11
Build Dependencies:
coinutils, osi
Link Dependencies:
coinutils, osi
Description:
Clp (Coin-or linear programming) is an open-source linear programming solver written in C++.

clustal-omega

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
argtable
Link Dependencies:
argtable
Description:
Clustal Omega: the last alignment program you'll ever need.

clustalw

Homepage:
Spack package:
Versions:
2.1
Description:
Multiple alignment of nucleic acid and protein sequences.

cmake

Homepage:
Spack package:
Versions:
3.19.2, 3.19.1, 3.19.0, 3.18.4, 3.18.3, 3.18.2, 3.18.1, 3.18.0, 3.17.4, 3.17.3, 3.17.1, 3.17.0, 3.16.8, 3.16.7, 3.16.6, 3.16.5, 3.16.4, 3.16.3, 3.16.2, 3.16.1, 3.16.0, 3.15.7, 3.15.6, 3.15.5, 3.15.4, 3.15.3, 3.15.2, 3.15.1, 3.15.0, 3.14.7, 3.14.6, 3.14.5, 3.14.4, 3.14.3, 3.14.2, 3.14.1, 3.14.0, 3.13.5, 3.13.4, 3.13.3, 3.13.2, 3.13.1, 3.13.0, 3.12.4, 3.12.3, 3.12.2, 3.12.1, 3.12.0, 3.11.4, 3.11.3, 3.11.2, 3.11.1, 3.11.0, 3.10.3, 3.10.2, 3.10.1, 3.10.0, 3.9.6, 3.9.4, 3.9.2, 3.9.0, 3.8.2, 3.8.1, 3.8.0, 3.7.2, 3.7.1, 3.6.1, 3.6.0, 3.5.2, 3.5.1, 3.5.0, 3.4.3, 3.4.0, 3.3.1, 3.1.0, 3.0.2, 2.8.10.2
Build Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, python, py-sphinx, openssl, ncurses
Link Dependencies:
curl, expat, zlib, bzip2, xz, libarchive, libuv, rhash, qt, openssl, ncurses
Description:
A cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

cmaq

Homepage:
Spack package:
Versions:
5.3.1, 5.3
Description:
Code base for the U.S. EPA's Community Multiscale Air Quality Model (CMAQ).

cmark

Homepage:
Spack package:
Versions:
0.29.0, 0.28.3, 0.28.2, 0.28.1, 0.28.0, 0.27.1
Build Dependencies:
cmake
Description:
cmark is the C reference implementation of CommonMark, a rationalized version of Markdown syntax with a spec.

cminpack

Homepage:
Spack package:
Versions:
master, 1.3.6
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
This is a C version of the minpack minimization package. Minpack includes software for solving nonlinear equations and nonlinear least squares problems.

cmocka

Homepage:
Spack package:
Versions:
1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
Unit-testing framework in pure C

cmockery

Homepage:
Spack package:
Versions:
0.1.2, 0.1.1, 0.1.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
A lightweight library to simplify and generalize the process of writing unit tests for C applications.

cmor

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2
Build Dependencies:
uuid, netcdf-c, udunits, hdf5, python, py-numpy
Link Dependencies:
uuid, netcdf-c, udunits, hdf5, python
Run Dependencies:
python, py-numpy
Description:
Climate Model Output Rewriter is used to produce CF-compliant netCDF files. The structure of the files created by the library and the metadata they contain fulfill the requirements of many of the climate community's standard model experiments.

cnmem

Homepage:
Spack package:
Versions:
git
Build Dependencies:
cmake
Description:
CNMem mempool for CUDA devices

cnpy

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
cnpy: library to read/write .npy and .npz files in C/C++.

cntk

Homepage:
Spack package:
Versions:
master, 2.0
Build Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Link Dependencies:
libzip, openblas, mpi, boost, protobuf, kaldi, opencv, cuda, cub, cudnn, nccl, cntk1bitsgd, multiverso
Description:
The Microsoft Cognitive Toolkit is a unified deep-learning toolkit that describes neural networks as a series of computational steps via a directed graph.

cntk1bitsgd

Homepage:
Spack package:
Versions:
master, c8b77d
Description:
CNTK1bitSGD is the header-only 1-bit stochastic gradient descent (1bit- SGD) library for the Computational Network Toolkit (CNTK).

cnvnator

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Link Dependencies:
samtools, htslib, root, bzip2, curl, lzma, zlib
Description:
A tool for CNV discovery and genotyping from depth-of-coverage by mapped reads.

codar-cheetah

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0, 0.5
Build Dependencies:
python
Run Dependencies:
python
Description:
CODAR Cheetah: The CODAR Experiment Harness for Exascale science applications.

code-server

Homepage:
Spack package:
Versions:
3.4.1, 3.1.1, 3.1.0
Build Dependencies:
git
Link Dependencies:
git
Description:
code-server is VS Code running on a remote server, accessible through the browser.

codec2

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
cmake
Description:
Open source speech codec designed for communications quality speech between 450 and 3200 bit/s. The main application is low bandwidth HF/VHF digital radio.

codes

Homepage:
Spack package:
Versions:
develop, 1.1.0, 1.0.0
Build Dependencies:
autoconf, automake, libtool, m4, pkgconfig, bison, flex, mpi, ross, sst-dumpi
Link Dependencies:
mpi, ross, sst-dumpi
Description:
CO-Design of multi-layer Exascale Storage (CODES) simulation framework

coevp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
mpi, silo, flann, lapack
Link Dependencies:
mpi, silo, flann, lapack
Description:
CoEVP is a scale-bridging proxy application for embedded viscoplasticity applications. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. Due to the size and complexity of the studied models, as well as restrictions on distribution, the currently available LULESH proxy application provides the coarse-scale model implementation and the ASPA proxy application provides the adaptive sampling support.

cohmm

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
gnuplot
Link Dependencies:
gnuplot
Description:
An anticipated important use-case for next-generation supercomputing is multiscale modeling, in which continuum equations for large-scale material deformation are augmented with high-fidelity, fine-scale simulations that provide constitutive data on demand.

coin3d

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.0.0
Build Dependencies:
boost, doxygen, perl
Link Dependencies:
openglu, opengl, libsm, libxext, libice, uuid, libxcb, libxau
Description:
Coin is an OpenGL-based, 3D graphics library that has its roots in the Open Inventor 2.1 API, which Coin still is compatible with.

coinhsl

Homepage:
Spack package:
Versions:
2019.05.21, 2015.06.23, 2014.01.17, 2014.01.10
Build Dependencies:
blas
Link Dependencies:
blas
Description:
CoinHSL is a collection of linear algebra libraries (KB22, MA27, MA28, MA54, MA57, MA64, MA77, MA86, MA97, MC19, MC34, MC64, MC68, MC69, MC78, MC80, OF01, ZB01, ZB11) bundled for use with IPOPT and other applications that use these HSL routines. Note: CoinHSL is licensed software. You will need to request a license from Research Councils UK and download a .tar.gz archive of CoinHSL yourself. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see http://spack.readthedocs.io/en/latest/mirrors.html

coinutils

Homepage:
Spack package:
Versions:
2.11.4
Description:
CoinUtils is an open-source collection of classes and helper functions that are generally useful to multiple COIN-OR projects.

collectd

Homepage:
Spack package:
Versions:
5.11.0, 5.10.0
Build Dependencies:
m4, autoconf, automake, libtool
Description:
The system statistics collection daemon.

collier

Homepage:
Spack package:
Versions:
1.2.5, 1.2.4, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1, 1.0
Build Dependencies:
cmake
Description:
COLLIER: A Complex One-Loop LIbrary with Extended Regularizations

colm

Homepage:
Spack package:
Versions:
0.12.0
Description:
Colm Programming Language Colm is a programming language designed for the analysis and transformation of computer languages. Colm is influenced primarily by TXL. It is in the family of program transformation languages.

colordiff

Homepage:
Spack package:
Versions:
1.0.19, 1.0.18
Build Dependencies:
perl
Link Dependencies:
perl
Description:
Colorful diff utility.

comd

Homepage:
Spack package:
Versions:
develop, 1.1
Build Dependencies:
mpi, graphviz
Link Dependencies:
mpi, graphviz
Description:
CoMD is a reference implementation of classical molecular dynamics algorithms and workloads as used in materials science. It is created and maintained by The Exascale Co-Design Center for Materials in Extreme Environments (ExMatEx). The code is intended to serve as a vehicle for co-design by allowing others to extend and/or reimplement it as needed to test performance of new architectures, programming models, etc. New versions of CoMD will be released to incorporate the lessons learned from the co-design process.

comgr

Homepage:
Spack package:
Versions:
4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, llvm-amdgpu, rocm-device-libs, rocm-cmake
Link Dependencies:
zlib, z3, ncurses
Description:
This provides various Lightning Compiler related services. It currently contains one library, the Code Object Manager (Comgr)

commons-lang

Homepage:
Spack package:
Versions:
2.6, 2.4
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-lang3

Homepage:
Spack package:
Versions:
3.7
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
The standard Java libraries fail to provide enough methods for manipulation of its core classes. Apache Commons Lang provides these extra methods. Lang provides a host of helper utilities for the java.lang API, notably String manipulation methods, basic numerical methods, object reflection, concurrency, creation and serialization and System properties. Additionally it contains basic enhancements to java.util.Date and a series of utilities dedicated to help with building methods, such as hashCode, toString and equals.

commons-logging

Homepage:
Spack package:
Versions:
1.2, 1.1.3, 1.1.1
Build Dependencies:
jdk
Run Dependencies:
jdk, java
Description:
When writing a library it is very useful to log information. However there are many logging implementations out there, and a library cannot impose the use of a particular one on the overall application that the library is a part of. The Logging package is an ultra-thin bridge between different logging implementations. A library that uses the commons-logging API can be used with any logging implementation at runtime. Commons-logging comes with support for a number of popular logging implementations, and writing adapters for others is a reasonably simple task.

compiz

Homepage:
Spack package:
Versions:
0.7.8
Build Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Link Dependencies:
libxcb, libxcomposite, libxfixes, libxdamage, libxrandr, libxinerama, libice, libsm, libxml2, libxslt, libxrender, libpng, glib, gconf
Description:
compiz - OpenGL window and compositing manager. Compiz is an OpenGL compositing manager that use GLX_EXT_texture_from_pixmap for binding redirected top-level windows to texture objects. It has a flexible plug- in system and it is designed to run well on most graphics hardware.

compositeproto

Homepage:
Spack package:
Versions:
0.4.2
Build Dependencies:
pkgconfig, util-macros
Description:
Composite Extension. This package contains header files and documentation for the composite extension. Library and server implementations are separate.

conda4aarch64

Homepage:
Spack package:
Versions:
1.0.0
Description:
Conda for aarch64

conduit

Homepage:
Spack package:
Versions:
develop, master, 0.6.0, 0.5.1, 0.5.0, 0.4.0, 0.3.1, 0.3.0, 0.2.1, 0.2.0
Build Dependencies:
cmake, python, py-numpy, py-mpi4py, hdf5, silo, adios, zfp, mpi, py-sphinx, py-sphinx-rtd-theme, doxygen
Link Dependencies:
python, hdf5, silo, adios, zfp, mpi, doxygen
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. It is used for data coupling between packages in-core, serialization, and I/O tasks.

connect-proxy

Homepage:
Spack package:
Versions:
1.105
Description:
`connect.c` is a simple relaying command to make network connection via SOCKS and https proxy

conserver

Homepage:
Spack package:
Versions:
8.2.5, 8.2.4, 8.2.3, 8.2.2, 8.2.1
Description:
Conserver is an application that allows multiple users to watch a serial console at the same time.

console-bridge

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0, 0.5.1, 0.5.0, 0.4.4, 0.4.3
Build Dependencies:
cmake
Description:
console_bridge is a ROS-independent, pure CMake (i.e. non-catkin and non-rosbuild package) that provides logging calls that mirror those found in rosconsole, but for applications that are not necessarily using ROS.

constype

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
pkgconfig, util-macros
Description:
constype prints on the standard output the Sun code for the type of display that the specified device is. It was originally written for SunOS, but has been ported to other SPARC OS'es and to Solaris on both SPARC & x86.

consul

Homepage:
Spack package:
Versions:
1.8.1, 1.8.0, 1.7.6
Build Dependencies:
go
Link Dependencies:
go
Description:
Consul is a distributed, highly available, and data center aware solution to connect and configure applications across dynamic, distributed infrastructure.

converge

Homepage:
Spack package:
Versions:
2.4.10, 2.3.23, 2.2.0, 2.1.0, 2.0.0
Build Dependencies:
mpi, openmpi
Link Dependencies:
mpi, openmpi
Description:
CONVERGE is a revolutionary computational fluid dynamics (CFD) program that eliminates the grid generation bottleneck from the simulation process. CONVERGE was developed by engine simulation experts and is straightforward to use for both engine and non-engine simulations. Unlike many CFD programs, CONVERGE automatically generates a perfectly orthogonal, structured grid at runtime based on simple, user-defined grid control parameters. This grid generation method completely eliminates the need to manually generate a grid. In addition, CONVERGE offers many other features to expedite the setup process and to ensure that your simulations are as computationally efficient as possible.

corenlp

Homepage:
Spack package:
Versions:
4.0.0
Build Dependencies:
ant
Description:
Stanford CoreNLP provides a set of human language technology tools. It can give the base forms of words, their parts of speech, whether they are names of companies, people, etc., normalize dates, times, and numeric quantities, mark up the structure of sentences in terms of phrases and syntactic dependencies, indicate which noun phrases refer to the same entities, indicate sentiment, extract particular or open-class relations between entity mentions, get the quotes people said, etc.

coreutils

Homepage:
Spack package:
Versions:
8.31, 8.30, 8.29, 8.26, 8.23
Description:
The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system.

corset

Homepage:
Spack package:
Versions:
1.06
Description:
Corset is a command-line software program to go from a de novo transcriptome assembly to gene-level counts.

cosbench

Homepage:
Spack package:
Versions:
0.4.2, 0.4.1.0, 0.4.0.1
Run Dependencies:
java, curl
Description:
COSBench is a benchmarking tool to measure the performance of Cloud Object Storage services. Object storage is an emerging technology that is different from traditional file systems (e.g., NFS) or block device systems (e.g., iSCSI). Amazon S3 and Openstack* swift are well-known object storage solutions

cosma

Homepage:
Spack package:
Versions:
master, 2.3.0, 2.2.0, 2.0.7, 2.0.2
Build Dependencies:
cuda, cmake, mpi, blas, scalapack
Link Dependencies:
cuda, mpi, blas, scalapack
Description:
Distributed Communication-Optimal Matrix-Matrix Multiplication Library

cosmoflow-benchmark

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cuda, python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Link Dependencies:
cuda
Run Dependencies:
python, py-h5py, py-numpy, py-pandas, py-pyyaml, py-horovod, py-mpi4py, py-tensorflow, py-torch
Description:
This is a an implementation of the CosmoFlow 3D convolutional neural network for benchmarking. It is written in TensorFlow with the Keras API and uses Horovod for distributed training.

cosmomc

Homepage:
Spack package:
Versions:
2016.11, 2016.06
Build Dependencies:
python, mpi, planck-likelihood, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Link Dependencies:
mpi, planck-likelihood
Run Dependencies:
python, py-matplotlib, py-numpy, py-pandas, py-scipy, py-six
Description:
CosmoMC is a Fortran 2008 Markov-Chain Monte-Carlo (MCMC) engine for exploring cosmological parameter space, together with Fortran and python code for analysing Monte-Carlo samples and importance sampling (plus a suite of scripts for building grids of runs, plotting and presenting results).

cosp2

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Proxy Application. CoSP2 represents a sparse linear algebra parallel algorithm for calculating the density matrix in electronic tructure theory. The algorithm is based on a recursive second-order Fermi- Operator expansion method (SP2) and is tailored for density functional based tight-binding calculations of non-metallic systems.

cotter

Homepage:
Spack package:
Versions:
master, 20190205
Build Dependencies:
cmake, erfa, pal, aoflagger
Link Dependencies:
erfa, pal, aoflagger
Description:
Andre Offringa's cotter pre-processing pipeline.

couchdb

Homepage:
Spack package:
Versions:
3.1.0, 3.0.1, 3.0.0
Build Dependencies:
icu4c, openssl, curl, node-js, mozjs, gmake, help2man, python, erlang
Link Dependencies:
icu4c, openssl, curl, node-js, mozjs
Run Dependencies:
python, erlang
Description:
A CouchDB server hosts named databases, which store documents. Each document is uniquely named in the database, and CouchDB provides a RESTful HTTP API for reading and updating (add, edit, delete) database documents.

cowsay

Homepage:
Spack package:
Versions:
3.04
Run Dependencies:
perl
Description:
A program that generates ASCII pictures of a cow with a message.

cp2k

Homepage:
Spack package:
Versions:
master, 8.1, 7.1, 6.1, 5.1, 4.1, 3.0
Build Dependencies:
cuda, python, blas, lapack, fftw-api, libxsmm, pkgconfig, libint, libxc, mpi, scalapack, cosma, elpa, plumed, pexsi, sirius, py-numpy, libvori, spglib, wannier90
Link Dependencies:
cuda, blas, lapack, fftw-api, libxsmm, libint, libxc, mpi, scalapack, cosma, elpa, plumed, pexsi, sirius, spglib
Description:
CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems

cpio

Homepage:
Spack package:
Versions:
2.13
Description:
GNU cpio copies files into or out of a cpio or tar archive. The archive can be another file on the disk, a magnetic tape, or a pipe.

cpp-httplib

Homepage:
Spack package:
Versions:
0.5.9, 0.5.8, 0.5.7, 0.5.6, 0.5.5, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.4.2, 0.3.3, 0.2.6, 0.2.1
Build Dependencies:
cmake
Description:
A C++ header-only HTTP/HTTPS server and client library.

cppad

Homepage:
Spack package:
Versions:
develop, 20170114
Build Dependencies:
cmake
Description:
A Package for Differentiation of C++ Algorithms.

cppcheck

Homepage:
Spack package:
Versions:
2.1, 1.87, 1.81, 1.78, 1.72, 1.68
Run Dependencies:
py-pygments
Description:
A tool for static C/C++ code analysis.

cppgsl

Homepage:
Spack package:
Versions:
master, 2.1.0, 2.0.0, 1.0.0
Build Dependencies:
cmake
Description:
C++ Guideline Support Library

cpprestsdk

Homepage:
Spack package:
Versions:
2.10.16, 2.9.1
Build Dependencies:
cmake, boost, openssl
Link Dependencies:
boost, openssl
Description:
The C++ REST SDK is a Microsoft project for cloud-based client-server communication in native code using a modern asynchronous C++ API design. This project aims to help C++ developers connect to and interact with services.

cppunit

Homepage:
Spack package:
Versions:
1.14.0, 1.13.2
Description:
Obsolete Unit testing framework for C++

cppzmq

Homepage:
Spack package:
Versions:
master, 4.6.0, 4.5.0, 4.4.1, 4.4.0, 4.3.0, 4.2.3, 4.2.2
Build Dependencies:
cmake, libzmq
Link Dependencies:
libzmq
Description:
C++ binding for 0MQ

cpu-features

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake
Description:
A cross platform C99 library to get cpu features at runtime.

cpuinfo

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake
Description:
cpuinfo is a library to detect essential for performance optimization information about host CPU.

cquery

Homepage:
Spack package:
Versions:
2018-08-23
Build Dependencies:
cmake, llvm
Link Dependencies:
llvm
Description:
a C++ header-only library for Nearest Neighbor (NN) search wih KD-trees.

cracklib

Homepage:
Spack package:
Versions:
2.9.7, 2.9.6, 2.9.5
Build Dependencies:
python, gettext, fmt, zlib
Link Dependencies:
gettext, fmt, zlib
Run Dependencies:
python
Description:
CrackLib tests passwords to determine whether they match certain security-oriented characteristics, with the purpose of stopping users from choosing passwords that are easy to guess.

cradl

Homepage:
Spack package:
Versions:
master
Build Dependencies:
py-pandas, py-torch, py-torchvision, py-apex, py-gputil, py-matplotlib, py-mpi4py
Link Dependencies:
py-pandas, py-torch, py-torchvision, py-apex, py-gputil, py-matplotlib, py-mpi4py
Description:
The CRADL proxy application captured performance metrics during inference on data from multiphysics codes, specifically ALE hydrodynamics codes.

cram

Homepage:
Spack package:
Versions:
1.0.1
Build Dependencies:
cmake, python, mpi
Link Dependencies:
python, mpi
Run Dependencies:
python
Description:
Cram runs many small MPI jobs inside one large MPI job.

cray-fftw

Homepage:
Spack package:
Versions:
3.3.8.8, 3.3.8.7
Description:
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine transforms or DCT/DST). This package is a wrapper for Cray's version of FFTW. To install this package, list it as an external package in packages.yaml, and make sure to load the correct cray-fftw module. In some cases you need to load cray-mpich before cray- fftw.

cray-libsci

Homepage:
Spack package:
Versions:
20.06.1, 19.06.1, 18.12.1, 18.11.1.2, 16.11.1, 16.09.1, 16.07.1, 16.06.1, 16.03.1
Description:
The Cray Scientific Libraries package, LibSci, is a collection of numerical routines optimized for best performance on Cray systems.

cray-mpich

Homepage:
Spack package:
Versions:
8.1.0, 8.0.16, 8.0.14, 8.0.11, 8.0.9, 7.7.16, 7.7.15, 7.7.14, 7.7.13
Description:
Cray's MPICH is a high performance and widely portable implementation of the Message Passing Interface (MPI) standard.

cromwell

Homepage:
Spack package:
Versions:
44
Run Dependencies:
java
Description:
Cromwell is a Workflow Management System geared towards scientific workflows.

cromwell-womtool

Homepage:
Spack package:
Versions:
44
Run Dependencies:
java
Description:
Command line utilities for interacting with the Workflow Object Model (WOM).

cronie

Homepage:
Spack package:
Versions:
1.5.5
Description:
Cronie contains the standard UNIX daemon crond that runs specified programs at scheduled times and related tools.

cryptopp

Homepage:
Spack package:
Versions:
7.0.0, 6.1.0, 6.0.0, 5.6.5, 5.6.4, 5.6.3, 5.6.2, 5.6.1
Build Dependencies:
gmake
Description:
Crypto++ is an open-source C++ library of cryptographic schemes. The library supports a number of different cryptography algorithms, including authenticated encryption schemes (GCM, CCM), hash functions (SHA-1, SHA2), public-key encryption (RSA, DSA), and a few obsolete/historical encryption algorithms (MD5, Panama).

cryptsetup

Homepage:
Spack package:
Versions:
2.3.1, 2.2.3, 2.2.2, 2.2.1
Build Dependencies:
uuid, lvm2, popt, json-c, util-linux, gettext, pkgconfig, autoconf, automake, libtool, m4, openssl
Link Dependencies:
uuid, lvm2, popt, json-c, util-linux, gettext, openssl
Description:
Cryptsetup and LUKS - open-source disk encryption.

csa-c

Homepage:
Spack package:
Versions:
master
Description:
csa: Cubic Spline Approximation. csa is a C code for cubic spline approximation of 2D scattered data. It provides a C library and a command line utility csabathy.

cscope

Homepage:
Spack package:
Versions:
15.9, 15.8b
Build Dependencies:
ncurses, flex, bison, pkgconfig
Link Dependencies:
ncurses
Description:
Cscope is a developer's tool for browsing source code.

csdp

Homepage:
Spack package:
Versions:
6.1.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CSDP is a library of routines that implements a predictor corrector variant of the semidefinite programming algorithm of Helmberg, Rendl, Vanderbei, and Wolkowicz

ctffind

Homepage:
Spack package:
Versions:
4.1.8
Build Dependencies:
wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
Fast and accurate defocus estimation from electron micrographs.

ctpl

Homepage:
Spack package:
Versions:
0.3
Build Dependencies:
autoconf, automake, libtool, m4, gtk-doc, glib
Link Dependencies:
gtk-doc, glib
Description:
CTPL is a template engine library written in C and distributed under the terms of the GNU GPL.

ctre

Homepage:
Spack package:
Versions:
master, 2.8.4, 2.8.3, 2.8.2, 2.8.1, 2.8, 2.7, 2.6.4, 2.6.3, 2.6.2, 2.6.1
Build Dependencies:
cmake
Description:
Compile time regular expressions for C++

cub

Homepage:
Spack package:
Versions:
1.9.10, 1.9.9, 1.9.8-1, 1.9.8, 1.8.0, 1.7.5, 1.7.4, 1.7.3, 1.7.2, 1.7.1
Description:
CUB is a C++ header library of cooperative threadblock primitives and other utilities for CUDA kernel programming.

cube

Homepage:
Spack package:
Versions:
4.5, 4.4.4, 4.4.3, 4.4.2, 4.4, 4.3.5, 4.3.4, 4.3.3, 4.2.3
Build Dependencies:
cubelib, pkgconfig, dbus, zlib, qt
Link Dependencies:
cubelib, dbus, zlib, qt
Description:
Cube the profile viewer for Score-P and Scalasca profiles. It displays a multi-dimensional performance space consisting of the dimensions: - performance metric - call path - system resource

cubelib

Homepage:
Spack package:
Versions:
4.5, 4.4.4, 4.4.3, 4.4.2, 4.4
Build Dependencies:
pkgconfig, zlib
Link Dependencies:
zlib
Description:
Component of CubeBundle: General purpose C++ library and tools

cubew

Homepage:
Spack package:
Versions:
4.5, 4.4.3, 4.4.2, 4.4.1, 4.4
Build Dependencies:
pkgconfig, zlib
Link Dependencies:
zlib
Description:
Component of CubeBundle: High performance C Writer library

cubist

Homepage:
Spack package:
Versions:
2.07
Description:
Cubist is a powerful tool for generating rule-based models that balance the need for accurate prediction against the requirements of intelligibility. Cubist models generally give better results than those produced by simple techniques such as multivariate linear regression, while also being easier to understand than neural networks.

cuda

Homepage:
Spack package:
Versions:
11.2.0, 11.1.1, 11.1.0, 11.0.2, 10.2.89, 10.1.243, 10.0.130, 9.2.88, 9.1.85, 9.0.176, 8.0.61, 8.0.44, 7.5.18, 6.5.14
Build Dependencies:
libxml2
Link Dependencies:
libxml2
Description:
CUDA is a parallel computing platform and programming model invented by NVIDIA. It enables dramatic increases in computing performance by harnessing the power of the graphics processing unit (GPU). Note: This package does not currently install the drivers necessary to run CUDA. These will need to be installed manually. See: https://docs.nvidia.com/cuda/ for details.

cuda-memtest

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, cuda
Link Dependencies:
cuda
Description:
Maintained and updated fork of cuda_memtest. original homepage: http://sourceforge.net/projects/cudagpumemtest . This software tests GPU memory for hardware errors and soft errors using CUDA or OpenCL.

cudnn

Homepage:
Spack package:
Versions:
8.0.4.30-11.1, 8.0.4.30-11.0, 8.0.4.30-10.2, 8.0.4.30-10.1, 8.0.3.33-11.0, 8.0.3.33-10.2, 8.0.3.33-10.1, 8.0.2.39-11.0, 8.0.2.39-10.2, 8.0.2.39-10.1, 8.0.0.180-11.0, 8.0.0.180-10.2, 7.6.5.32-10.2, 7.6.5.32-10.1, 7.6.5.32-10.0, 7.6.5.32-9.2, 7.6.5.32-9.0, 7.6.4.38-10.1, 7.6.4.38-10.0, 7.6.4.38-9.2, 7.6.4.38-9.0, 7.6.3.30-10.1, 7.5.1.10-10.1, 7.5.1.10-10.0, 7.5.0.56-10.1, 7.5.0.56-10.0, 7.3.0.29-9.0, 7.2.1.38-9.0, 7.1.3-9.1, 6.0-8.0, 5.1-8.0
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
NVIDIA cuDNN is a GPU-accelerated library of primitives for deep neural networks

cunit

Homepage:
Spack package: