Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 6469 mainline packages:

3dtk oommf py-tensorflow-metadata
3proxy op2-dsl py-tensorflow-probability
7zip opa-psm2 py-termcolor
abacus opam py-terminado
abduco opari2 py-terminaltables
abi-compliance-checker open-iscsi py-tern
abi-dumper open-isns py-testfixtures
abinit open3d py-testinfra
abseil-cpp openal-soft py-testpath
abyss openbabel py-testrepository
accfft openblas py-testresources
acct opencarp py-testscenarios
accumulo opencascade py-testtools
ace opencl-c-headers py-tetoolkit
ack opencl-clhpp py-text-unidecode
acl opencl-headers py-textblob
acpica-tools opencoarrays py-texttable
acpid opencv py-tfdlpack
activeharmony opendatadetector py-theano
activemq opendx py-thinc
acts openexr py-thirdorder
acts-dd4hep openfast py-threadpoolctl
addrwatch openfdtd py-tifffile
adept-utils openfoam py-timm
adf openfoam-org py-tinyarray
adiak openfst py-tinycss2
adios opengl py-tokenize-rt
adios2 openglu py-tokenizers
adlbx openimageio py-toml
admixtools openipmi py-tomli
adms openjdk py-tomli-w
adol-c openjpeg py-tomlkit
advancecomp openkim-models py-tomopy
adwaita-icon-theme openldap py-toolz
aegean openlibm py-toposort
aeskeyfind openloops py-torch
aespipe openmc py-torch-cluster
agile openmm py-torch-geometric
agrep openmolcas py-torch-nvidia-apex
aida openmpi py-torch-scatter
akantu openmx py-torch-sparse
alan opennurbs py-torch-spline-conv
albany openpa py-torchaudio
albert openpbs py-torchfile
alembic openpmd-api py-torchgeo
alglib openrasmol py-torchmeta
allpaths-lg openresty py-torchmetrics
alluxio openscenegraph py-torchsummary
alpaka openslide py-torchtext
alpgen openslp py-torchvision
alps openspeedshop py-tornado
alquimia openspeedshop-utils py-tox
alsa-lib openssh py-tpot
aluminum openssl py-tqdm
ambari openstf py-traceback2
amber opensubdiv py-traitlets
amdblis opentsdb py-traits
amdfftw openturns py-traitsui
amdlibflame openvdb py-transformers
amdlibm openwsman py-transforms3d
amdscalapack opium py-treehash
amg optional-lite py-triangle
amg2013 optipng py-trojanzoo-sphinx-theme
amgx opus py-tuiview
aml or-tools py-tweedledum
amp oracle-instant-client py-twine
ampl oras py-twisted
ampliconnoise orbit2 py-typed-ast
ampt orc py-typeguard
amr-wind orca py-typesentry
amrex orfm py-typing
amrfinder orientdb py-typing-extensions
amrvis orthofiller py-tzlocal
anaconda2 orthofinder py-ucsf-pyem
anaconda3 orthomcl py-ucx-py
andi osi py-uhi
angsd osmctools py-ujson
ant osqp py-umalqurra
antimony ossp-uuid py-umi-tools
antlr osu-micro-benchmarks py-uncertainties
ants otf py-unicycler
aocc otf2 py-unidecode
aocl-sparse ovito py-unittest2
aoflagger p11-kit py-unittest2py3k
aom p3dfft3 py-unshare
aomp p4est py-update-checker
apachetop p7zip py-uproot
apcomp pacbio-daligner py-uproot3
ape pacbio-damasker py-uproot3-methods
aperture-photometry pacbio-dazz-db py-uproot4
apex pacbio-dextractor py-uritemplate
apfel pacifica-cli py-urllib3
apktool packmol py-urwid
apple-libunwind pacparser py-us
apple-libuuid pacvim py-usgs
applewmproto pagit py-utils
appres pagmo py-uvloop
apptainer pagmo2 py-uvw
apr pajeng py-uwsgi
apr-util pal py-vcf-kit
aragorn palisade-development py-vcrpy
arbor paml py-vcstool
arborx panda py-vcstools
archer pandaseq py-vcversioner
argobots pandoc py-vector
argon2 pango py-vector-quantize-pytorch
argp-standalone pangolin py-vermin
args pangomm py-versioneer
argtable papi py-vine
aria2 papyrus py-virtualenv
arm paradiseo py-virtualenv-clone
arm-forge parallel py-virtualenvwrapper
armadillo parallel-netcdf py-visdom
armpl parallelio py-voluptuous
arpack-ng parallelmergetree py-vsc-base
arrayfire paraver py-vsc-install
arrow paraview py-vsts
asagi parflow py-vsts-cd-manager
ascent parmetis py-walinuxagent
asciidoc parmgridgen py-wand
asciidoc-py3 parmmg py-wandb
asdcplib parquet-cpp py-warlock
asdf-cxx parquet-format py-warpx
asio parsec py-wasabi
aspa parsimonator py-watchdog
aspcud parsplice py-wcsaxes
aspect partitionfinder py-wcwidth
aspell pasta py-weave
aspell6-de pastix py-webargs
aspell6-en patch py-webencodings
aspell6-es patchelf py-webkit-server
aspera-cli patchutils py-weblogo
assimp pathfinder py-webob
astra pax-utils py-websocket-client
astral pbbam py-websockets
astyle pbmpi py-werkzeug
at-spi2-atk pbsuite py-wget
at-spi2-core pciutils py-whatshap
atf pcl py-wheel
athena pcma py-whichcraft
atk pcre py-whoosh
atlas pcre2 py-widgetsnbextension
atmi pdc py-wincertstore
atom-dft pdf2svg py-word2number
atompaw pdftk py-wordcloud
atop pdsh py-workload-automation
attr pdt py-wradlib
audacious pegtl py-wrapt
audacity pennant py-wsproto
audit-userspace percept py-wstool
augustus percona-server py-wub
authd perfstubs py-wurlitzer
authselect perl py-ww
autoconf perl-acme-damn py-wxmplot
autoconf-archive perl-algorithm-diff py-wxpython
autodiff perl-alien-build py-x21
autodock-gpu perl-alien-libxml2 py-xarray
autodock-vina perl-alien-svn py-xattr
autofact perl-app-cmd py-xdot
autogen perl-array-utils py-xenv
automaded perl-b-hooks-endofscope py-xgboost
automake perl-bio-searchio-hmmer py-xlrd
avizo perl-bioperl py-xlsxwriter
aws-parallelcluster perl-bit-vector py-xlwt
awscli perl-cairo py-xmlrunner
axel perl-capture-tiny py-xmltodict
axl perl-carp-clan py-xonsh
axom perl-cgi py-xopen
babelflow perl-class-data-inheritable py-xpyb
babeltrace perl-class-inspector py-xrootdpyfs
bacio perl-class-load py-xvfbwrapper
backupninja perl-class-load-xs py-xxhash
bam-readcount perl-clone py-yacs
bamaddrg perl-clone-choose py-yahmm
bamdst perl-compress-raw-bzip2 py-yajl
bamtools perl-compress-raw-zlib py-yamlreader
bamutil perl-config-general py-yapf
banner perl-contextual-return py-yarl
bannergrab perl-cpan-meta-check py-yaspin
barrnap perl-data-dumper py-yolk3k
bart perl-data-optlist py-youtube-dl
barvinok perl-data-stag py-yq
bash perl-date-manip py-yt
bash-completion perl-db-file py-ytopt
bashtop perl-dbd-mysql py-ytopt-autotune
bat perl-dbd-pg py-zarr
batchedblas perl-dbd-sqlite py-zc-buildout
batctl perl-dbi py-zc-lockfile
bats perl-devel-cycle py-zict
baurmc perl-devel-globaldestruction py-zipfile-deflate64
bazel perl-devel-overloadinfo py-zipp
bbcp perl-devel-stacktrace py-zope-event
bbmap perl-devel-symdump py-zope-interface
bc perl-digest-md5 py-zxcvbn
bcache perl-dist-checkconflicts pygmo
bcftools perl-encode-locale pythia6
bcl2fastq2 perl-error pythia8
bdftopcf perl-eval-closure python
bdii perl-exception-class q-e-sirius
bdw-gc perl-exporter-lite qbank
beagle perl-exporter-tiny qbox
beakerlib perl-extutils-config qca
bear perl-extutils-depends qcachegrind
beast-tracer perl-extutils-helpers qd
beast1 perl-extutils-installpaths qemu
beast2 perl-extutils-makemaker qgis
bedops perl-extutils-pkgconfig qgraf
bedtools2 perl-ffi-checklib qhull
beforelight perl-file-chdir qjson
benchmark perl-file-copy-recursive qmcpack
berkeley-db perl-file-homedir qmd-progress
berkeleygw perl-file-listing qnnpack
bertini perl-file-pushd qorts
bgpdump perl-file-sharedir-install qperf
bib2xhtml perl-file-slurp qrupdate
bigdft-atlab perl-file-slurp-tiny qscintilla
bigdft-chess perl-file-slurper qt
bigdft-core perl-file-which qt-creator
bigdft-futile perl-font-ttf qtgraph
bigdft-libabinit perl-forks qthreads
bigdft-psolver perl-fth qtkeychain
bigdft-spred perl-gd qualimap
bigdft-suite perl-gdgraph quantum-espresso
bigreqsproto perl-gdgraph-histogram quartz
bind9 perl-gdtextutil qucs
binutils perl-getopt-tabular quicksilver
bioawk perl-graph quinoa
biobambam2 perl-graph-readwrite quota
biobloom perl-hash-merge qwt
biopieces perl-html-parser qwtpolar
bird perl-html-tagset r
bismark perl-http-cookies r-a4
bison perl-http-daemon r-a4base
bitlbee perl-http-date r-a4classif
bitmap perl-http-message r-a4core
bitsery perl-http-negotiate r-a4preproc
blackhat perl-inline r-a4reporting
blaspp perl-inline-c r-abadata
blasr perl-io-all r-abaenrichment
blasr-libcpp perl-io-compress r-abind
blast-legacy perl-io-html r-absseq
blast-plus perl-io-prompt r-acde
blast2go perl-io-sessiondata r-acepack
blat perl-io-socket-ssl r-acgh
blaze perl-io-string r-acme
blis perl-io-stringy r-ada
bliss perl-io-tty r-adabag
blitz perl-ipc-run r-ade4
blktrace perl-json r-adegenet
bloaty perl-libwww-perl r-adegraphics
blogbench perl-libxml-perl r-adephylo
blt perl-list-moreutils r-adespatial
bmake perl-list-moreutils-xs r-adgoftest
bmi perl-log-log4perl r-adsplit
bml perl-logger-simple r-aer
bohrium perl-lwp-mediatypes r-afex
boinc-client perl-lwp-protocol-https r-affxparser
bolt perl-mailtools r-affy
bonniepp perl-math-bezier r-affycomp
bookleaf-cpp perl-math-cdf r-affycompatible
boost perl-math-cephes r-affycontam
boostmplcartesianproduct perl-math-matrixreal r-affycoretools
botan perl-math-round r-affydata
bowtie perl-math-vecstat r-affyexpress
bowtie2 perl-mce r-affyilm
boxlib perl-mni-perllib r-affyio
bpp-core perl-module-build r-affypdnn
bpp-phyl perl-module-build-tiny r-affyplm
bpp-phyl-omics perl-module-implementation r-affyqcreport
bpp-popgen perl-module-runtime r-affyrnadegradation
bpp-seq perl-module-runtime-conflicts r-agdex
bpp-seq-omics perl-moose r-agilp
bpp-suite perl-mozilla-ca r-agimicrorna
bracken perl-mro-compat r-aims
braker perl-namespace-clean r-aldex2
branson perl-net-http r-allelicimbalance
breakdancer perl-net-scp-expect r-alpine
bref3 perl-net-ssleay r-als
breseq perl-number-format r-alsace
bricks perl-object-insideout r-altcdfenvs
bridger perl-package-deprecationmanager r-amap
brigand perl-package-stash r-amelia
brltty perl-package-stash-xs r-ampliqueso
brotli perl-padwalker r-analysispageserver
brpc perl-parallel-forkmanager r-anaquin
brunsli perl-params-util r-aneufinder
brynet perl-params-validate r-aneufinderdata
bsseeker2 perl-parse-recdescent r-animation
bubblewrap perl-path-tiny r-annaffy
bucky perl-pdf-api2 r-annotate
buddy perl-pegex r-annotationdbi
bufr perl-perl-unsafe-signals r-annotationfilter
bumpversion perl-perl-version r-annotationforge
busco perl-perl4-corelibs r-annotationhub
busybox perl-perl6-slurp r-anytime
butter perl-perlio-gzip r-aod
butterflypack perl-perlio-utf8-strict r-ape
bwa perl-readonly r-aplot
bwtool perl-regexp-common r-argparse
byacc perl-scalar-list-utils r-aroma-light
byobu perl-scalar-util-numeric r-ash
byte-unixbench perl-set-intervaltree r-askpass
byteman perl-set-intspan r-assertive
bzip2 perl-set-scalar r-assertive-base
c perl-soap-lite r-assertive-code
c-ares perl-star-fusion r-assertive-data
c-blosc perl-statistics-basic r-assertive-data-uk
c-blosc2 perl-statistics-descriptive r-assertive-data-us
c-lime perl-statistics-pca r-assertive-datetimes
c3d perl-sub-exporter r-assertive-files
ca-certificates-mozilla perl-sub-exporter-progressive r-assertive-matrices
cabana perl-sub-identify r-assertive-models
cachefilesd perl-sub-install r-assertive-numbers
caffe perl-sub-name r-assertive-properties
cairo perl-sub-uplevel r-assertive-reflection
cairomm perl-svg r-assertive-sets
caliper perl-swissknife r-assertive-strings
callflow perl-sys-sigaction r-assertive-types
callpath perl-task-weaken r-assertthat
camellia perl-term-readline-gnu r-backports
camp perl-termreadkey r-bamsignals
camx perl-test-cleannamespaces r-base64
canal perl-test-deep r-base64enc
candle-benchmarks perl-test-differences r-bayesm
cans perl-test-exception r-bayesplot
cantera perl-test-fatal r-bbmisc
canu perl-test-memory-cycle r-beachmat
cap3 perl-test-more r-beanplot
capnproto perl-test-most r-beeswarm
capstone perl-test-needs r-bfast
cardioid perl-test-output r-bfastspatial
care perl-test-requires r-bglr
casacore perl-test-requiresinternet r-bh
cask perl-test-warn r-biasedurn
casper perl-test-warnings r-bibtex
cassandra perl-text-csv r-bigalgebra
catalyst perl-text-diff r-bigmemory
catch2 perl-text-format r-bigmemory-sri
cbc perl-text-simpletable r-bindr
cbench perl-text-soundex r-bindrcpp
cbflib perl-text-unidecode r-bio3d
cblas perl-thread-queue r-biobase
cbtf perl-threads r-biocfilecache
cbtf-argonavis perl-time-hires r-biocgenerics
cbtf-argonavis-gui perl-time-piece r-biocinstaller
cbtf-krell perl-timedate r-biocio
cbtf-lanl perl-tk r-biocmanager
cc65 perl-try-tiny r-biocneighbors
ccache perl-uri r-biocparallel
ccfits perl-uri-encode r-biocsingular
ccls perl-want r-biocstyle
ccs-qcd perl-www-robotrules r-biocversion
cctools perl-xml-dom r-biom-utils
cdbfasta perl-xml-dom-xpath r-biomart
cdd perl-xml-filter-buffertext r-biomartr
cddlib perl-xml-libxml r-biomformat
cdecimal perl-xml-libxslt r-biostrings
cdhit perl-xml-namespacesupport r-biovizbase
cdo perl-xml-parser r-bit
ceed perl-xml-parser-lite r-bit64
cereal perl-xml-quote r-bitops
ceres-solver perl-xml-regexp r-blavaan
cfitsio perl-xml-sax r-blob
cgal perl-xml-sax-base r-blockmodeling
cgdb perl-xml-sax-writer r-bmp
cgdcbxd perl-xml-simple r-bookdown
cget perl-xml-twig r-boot
cgl perl-xml-writer r-boruta
cgm perl-xml-xpathengine r-brew
cgns perl-yaml r-bridgesampling
chaco perl-yaml-libyaml r-brio
chai pestpp r-brms
chameleon petaca r-brobdingnag
changa petsc r-broom
channelflow pexsi r-bsgenome
chaparral pfapack r-bsgenome-hsapiens-ucsc-hg19
chapel pfft r-bslib
chaplin pflask r-bsseq
charliecloud pflotran r-bumphunter
charmpp pfunit r-bwstest
chatterbug pgdspider r-c50
check pgi r-ca
chgcentre pgplot r-cachem
chill phantompeakqualtools r-cairo
chlorop phast r-callr
chombo phasta r-car
chrony phist r-caracas
chrpath phoenix r-cardata
cinch photos r-caret
circos photos-f r-caretensemble
cistem php r-caroline
citcoms phrap-crossmatch-swat r-category
cityhash phred r-catools
cjson phylip r-cca
ck phylobayesmpi r-ccp
clamav phyluce r-cdcfluview
clamr picard r-cellranger
clapack picsar r-champ
clara picsarlite r-champdata
claw pidx r-checkmate
clblast pig r-checkpoint
cleaveland4 pigz r-chemometrics
cleverleaf pika r-chipseq
clfft pilon r-chron
clhep pindel r-circlize
cli11 pinentry r-circstats
clinfo pinfo r-class
clingo pipework r-classint
clingo-bootstrap piranha r-cli
cln pism r-clipr
cloc pixman r-clisymbols
cloog pixz r-clue
cloverleaf pkg-config r-cluster
cloverleaf3d pkgconf r-clustergeneration
clp pktools r-clusterprofiler
clustal-omega planck-likelihood r-cner
clustalw plasma r-coda
cmake platypus r-codetools
cmaq plink r-codex
cmark plink-ng r-coin
cminpack plplot r-colorspace
cmocka plumed r-colourpicker
cmockery ply r-combinat
cmor pmdk r-commonmark
cni-plugins pmemkv r-complexheatmap
cnmem pmerge r-compositions
cnpy pmgr-collective r-compquadform
cntk pmix r-condop
cntk1bitsgd pmlib r-conquer
cnvnator pnfft r-construct
codar-cheetah pngquant r-convevol
code-server pngwriter r-copula
codec2 pnmpi r-corhmm
codes poamsa r-corpcor
coevp pocl r-corrplot
cohmm podio r-countrycode
coin3d podman r-covr
coinhsl poke r-cowplot
coinutils polymake r-cpp11
collectd poplddecay r-crayon
collier poppler r-credentials
colm poppler-data r-crosstalk
colordiff popt r-crul
comd porta r-ctc
comgr portage r-cubature
commons-lang portcullis r-cubist
commons-lang3 ports-of-call r-curl
commons-logging postgis r-dada2
compadre postgresql r-data-table
compiz povray r-dbi
compose powerapi r-dbplyr
compositeproto powertop r-debugme
conda4aarch64 ppl r-decipher
conduit pplacer r-delayedarray
conmon ppopen-appl-amr-fdm r-delayedmatrixstats
connect-proxy ppopen-appl-bem r-deldir
conserver ppopen-appl-bem-at r-dendextend
console-bridge ppopen-appl-dem-util r-deoptim
constype ppopen-appl-fdm r-deoptimr
consul ppopen-appl-fdm-at r-deriv
converge ppopen-appl-fem r-desc
cool ppopen-appl-fvm r-deseq
coral ppopen-at r-deseq2
corenlp ppopen-math-mp r-desolve
coreutils ppopen-math-vis r-devtools
corset prank r-dexseq
cosbench precice r-diagrammer
cosign predixy r-dicekriging
cosma premake-core r-dichromat
cosmoflow-benchmark presentproto r-diffobj
cosmomc preseq r-diffusionmap
cosp2 presto r-digest
costa price r-diptest
cotter primer3 r-dirichletmultinomial
couchdb prinseq-lite r-dismo
cowsay printproto r-distributional
cp2k prism r-diversitree
cpio prmon r-dmrcate
cpmd prng r-dnacopy
cpp-argparse probconsrna r-do-db
cpp-httplib procenv r-domc
cpp-termcolor process-in-process r-doparallel
cppad procps r-dorng
cppcheck procps-ng r-dose
cppcoro prod-util r-dosnow
cppgsl prodigal r-dotcall64
cpprestsdk professor r-downloader
cppunit profugusmc r-dplyr
cppzmq proj r-dqrng
cpu-features prokka r-dss
cpuinfo prometheus r-dt
cqrlib prophecy4f r-dtplyr
cquery protobuf r-dtw
cracklib protobuf-c r-dygraphs
cradl proxymngr r-dynamictreecut
cram prrte r-e1071
cray-fftw pruners-ninja r-earth
cray-libsci ps-lite r-ecp
cray-mpich pscmc r-edger
cray-mvapich2 psi4 r-effects
cray-pmi psimd r-elemstatlearn
creduce pslib r-ellipse
crmc psm r-ellipsis
cromwell psmc r-emmeans
cromwell-womtool pstreams r-emmli
cronie pthreadpool r-energy
crtm pugixml r-enrichplot
cryptopp pulseaudio r-ensembldb
cryptsetup pumi r-envstats
csa-c pv r-ergm
cscope pvm r-estimability
csdp pxz r-europepmc
ctffind py-3to2 r-evaluate
ctpl py-4suite-xml r-evd
ctre py-abcpy r-exactextractr
cub py-abipy r-exomecopy
cube py-absl-py r-exomedepth
cube-blade py-accimage r-experimenthub
cubelib py-acme-tiny r-expint
cubew py-adal r-expm
cubist py-adb-enhanced r-factoextra
cuda py-addict r-factominer
cuda-memtest py-adios r-fansi
cudnn py-advancedhtmlparser r-farver
cufflinks py-aenum r-fastcluster
cunit py-affine r-fastdigest
cupla py-agate r-fastica
cups py-agate-dbf r-fastmap
curl py-agate-excel r-fastmatch
cusz py-agate-sql r-fastmatrix
cutlang py-aiobotocore r-fda
cutlass py-aiocontextvars r-fdb-infiniummethylation-hg18
cvector py-aiodns r-fdb-infiniummethylation-hg19
cvs py-aiofiles r-fds
cxx py-aiohttp r-ff
cxxopts py-aiohttp-cors r-fftwtools
cxxtest py-aioitertools r-fgsea
cyrus-sasl py-aioredis r-fields
czmq py-aiosignal r-filehash
dakota py-aiosqlite r-filelock
daligner py-alabaster r-findpython
dalton py-alembic r-fit-models
damageproto py-altgraph r-fitdistrplus
damaris py-amqp r-flashclust
damask py-angel r-flexclust
damask-grid py-aniso8601 r-flexmix
damask-mesh py-annexremote r-fnn
damselfly py-ansi2html r-fontawesome
darshan-runtime py-ansible r-forcats
darshan-util py-antlr4-python3-runtime r-foreach
dash py-anuga r-forecast
datamash py-anyio r-foreign
dataspaces py-anytree r-formatr
datatransferkit py-apache-beam r-formula
date py-apache-libcloud r-fpc
dateutils py-apex r-fpcompare
davix py-apipkg r-fracdiff
dbcsr py-appdirs r-fs
dbow2 py-applicationinsights r-futile-logger
dbus py-appnope r-futile-options
dbus-glib py-apptools r-future
dbxtool py-apscheduler r-future-apply
dcap py-arcgis r-gamlss
dcm2niix py-archspec r-gamlss-data
dcmtk py-argcomplete r-gamlss-dist
dd4hep py-argh r-gamm4
ddd py-argon2-cffi r-gargle
dealii py-argon2-cffi-bindings r-gbm
dealii-parameter-gui py-argparse r-gbrd
debbuild py-args r-gcrma
debugedit py-arrow r-gdalutilities
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delta py-asn1crypto r-genelendatabase
denovogear py-aspy-yaml r-genemeta
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dftd4 py-astor r-genetics
dftfe py-astpretty r-genie3
dhpmm-f py-astroid r-genomeinfodb
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dia py-astropy-healpix r-genomicalignments
dialign py-astropy-helpers r-genomicfeatures
dialign-tx py-asttokens r-genomicranges
diamond py-astunparse r-gensa
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diffmark py-async-lru r-geometries
diffsplice py-async-timeout r-geometry
diffutils py-asyncio r-geomorph
dihydrogen py-asynctest r-geonames
dimemas py-atomicwrites r-geoquery
ding-libs py-atpublic r-geor
dire py-atropos r-geosphere
direnv py-ats r-gert
discovar py-attrs r-getopt
discovardenovo py-audioread r-getoptlong
disktype py-autograd r-ggally
dislin py-autograd-gamma r-ggbeeswarm
distcc py-automat r-ggbio
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dlib py-auxlib r-ggforce
dlpack py-avro r-ggfun
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dmidecode py-avro-python3 r-ggmap
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dmxproto py-awkward0 r-ggpubr
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dnstop py-azure-batch r-ggridges
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dsrc py-azure-mgmt-botservice r-gostats
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dwz py-azure-mgmt-containerservice r-gridbase
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elfio py-azure-mgmt-privatedns r-htmlwidgets
elfutils py-azure-mgmt-rdbms r-httpcode
elk py-azure-mgmt-recoveryservices r-httpuv
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elpa py-azure-mgmt-redhatopenshift r-hwriter
elsd py-azure-mgmt-redis r-hypergraph
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entt py-azure-mgmt-storage r-impute
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gh py-ecos r-rappdirs
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git py-emoji r-rcpparmadillo
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global py-exodus-bundler r-rda
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grandr py-flexx r-rngtools
graph500 py-flit r-rnoaa
graphblast py-flit-core r-robust
graphicsmagick py-flufl-lock r-robustbase
graphite2 py-flye r-roc
graphlib py-fn-py r-rocr
graphmap py-fonttools r-rodbc
graphviz py-ford r-rook
grass py-formatizer r-rots
graylog2-server py-formulaic r-roxygen2
grep py-fortran-language-server r-rpart
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grib-util py-fparser r-rpmm
grid py-fprettify r-rpostgres
gridlab-d py-fracridge r-rpostgresql
grnboost py-freezegun r-rprojroot
groff py-frozenlist r-rpsychi
gromacs py-fs r-rrblup
gromacs-chain-coordinate py-fsspec r-rrcov
gromacs-swaxs py-ftfy r-rrpp
grpc py-funcsigs r-rsamtools
gsettings-desktop-schemas py-functools32 r-rsconnect
gsl py-funcy r-rsnns
gslib py-fury r-rsolnp
gtk-doc py-fusepy r-rspectra
gtkmm py-future r-rsqlite
gtkorvo-atl py-futures r-rstan
gtkorvo-cercs-env py-fuzzywuzzy r-rstantools
gtkorvo-dill py-fypp r-rstatix
gtkorvo-enet py-gast r-rstudioapi
gtkplus py-gcovr r-rsvd
gtksourceview py-gcs-oauth2-boto-plugin r-rtracklayer
gts py-gdbgui r-rtsne
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guacamole-server py-gee-asset-manager r-runjags
guidance py-geeadd r-ruv
guile py-geeup r-rvcheck
gunrock py-gemini r-rversions
gurobi py-genders r-rvest
gxsview py-geneimpacts r-rviennacl
gzip py-genshi r-rzmq
h2database py-gensim r-s2
h5bench py-geoalchemy2 r-s4vectors
h5cpp py-geocube r-samr
h5hut py-geographiclib r-sandwich
h5part py-geopandas r-sass
h5utils py-geoplot r-satellite
h5z-zfp py-geopy r-scaledmatrix
hacckernels py-getorganelle r-scales
hackrf-host py-gevent r-scater
hadoop py-gf256 r-scattermore
hadoop-xrootd py-gffutils r-scatterpie
hal py-gimmik r-scatterplot3d
halc py-gin-config r-scrime
half py-git-review r-sctransform
hama py-gitdb r-scuttle
hapcut2 py-gitpython r-sdmtools
hapdip py-glmnet r-segmented
haploview py-glmsingle r-selectr
haproxy py-glob2 r-seqinr
hardlink py-globus-sdk r-seqlogo
harfbuzz py-gluoncv r-servr
harminv py-gnuplot r-sessioninfo
hashcat py-goatools r-seurat
haveged py-gooey r-seuratobject
hazelcast py-google r-sf
hbase py-google-api-core r-sfheaders
hbm-dramsim2 py-google-api-python-client r-sfsmisc
hc py-google-apitools r-shadowtext
hcoll py-google-auth r-shape
hdf py-google-auth-httplib2 r-shiny
hdf-eos2 py-google-auth-oauthlib r-shinydashboard
hdf-eos5 py-google-cloud-core r-shinyfiles
hdf5 py-google-cloud-storage r-shinyjs
hdf5-blosc py-google-crc32c r-shinystan
hdf5-vfd-gds py-google-pasta r-shinythemes
hdf5-vol-async py-google-resumable-media r-shortread
hdf5-vol-external-passthrough py-googleapis-common-protos r-siggenes
hdf5-vol-log py-googledrivedownloader r-simpleaffy
hdfview py-gosam r-singlecellexperiment
healpix-cxx py-gpaw r-sitmo
heaptrack py-gpustat r-sm
heasoft py-gputil r-smoof
heffte py-gpy r-sn
helib py-gpyopt r-snakecase
helics py-gpytorch r-snow
help2man py-gql r-snowfall
henson py-grandalf r-snprelate
hepmc py-graphql-core r-snpstats
hepmc3 py-graphviz r-som
hepmcanalysis py-greenlet r-somaticsignatures
heppdt py-grequests r-sourcetools
heputils py-griddataformats r-sp
hercules py-grpcio r-spacetime
hermes py-grpcio-tools r-spades
herwig3 py-gsd r-spades-addins
herwigpp py-gsi r-spades-core
hevea py-gsutil r-spades-tools
hibench py-gtdbtk r-spam
hic-pro py-guidata r-sparsem
hicolor-icon-theme py-guiqwt r-sparsematrixstats
hicops py-gym r-spatial
highfive py-h11 r-spatialeco
highwayhash py-h2 r-spatialpack
hiop py-h5glance r-spatialreg
hip py-h5netcdf r-spatstat
hip-rocclr py-h5py r-spatstat-core
hipace py-h5sh r-spatstat-data
hipblas py-hacking r-spatstat-geom
hipcub py-haphpipe r-spatstat-linnet
hipfft py-hatchet r-spatstat-random
hipfort py-hdbscan r-spatstat-sparse
hipify-clang py-hdfs r-spatstat-utils
hipsolver py-healpy r-spdata
hipsparse py-heapdict r-spdep
hipsycl py-hep-ml r-speedglm
hiredis py-hepdata-converter r-spem
hisat2 py-hepdata-lib r-splancs
hisea py-hepdata-validator r-splitstackshape
hive py-hepunits r-sqldf
hivex py-hieroglyph r-squarem
hmmer py-hiredis r-squash
hohqmesh py-hist r-sseq
homer py-histbook r-stabledist
hoomd-blue py-histogrammar r-stanheaders
hoppet py-histoprint r-stargazer
hotspot py-holland-backup r-statmod
hpcc py-horovod r-statnet-common
hpccg py-hpack r-stringfish
hpcg py-hpbandster r-stringi
hpctoolkit py-hpcbench r-stringr
hpcviewer py-hpccm r-strucchange
hpcx-mpi py-hstspreload r-strucchangercpp
hpddm py-html2text r-styler
hpgmg py-html5lib r-subplex
hping py-htmlgen r-summarizedexperiment
hpl py-htseq r-suppdists
hpx py-httpbin r-survey
hpx-kokkos py-httpcore r-survival
hpx5 py-httplib2 r-sva
hsa-rocr-dev py-httpretty r-svglite
hsakmt py-httpstan r-sys
hsakmt-roct py-httptools r-systemfonts
hsf-cmaketools py-httpx r-tarifx
hssp py-huggingface-hub r-taxizedb
hstr py-humanfriendly r-tclust
hto4l py-humanize r-teachingdemos
htop py-hvac r-tensor
htslib py-hypercorn r-tensora
http-get py-hyperframe r-terra
http-load py-hyperlink r-tester
http-parser py-hyperopt r-testit
http-ping py-hypothesis r-testthat
http-post py-ibm-cloud-sdk-core r-tfbstools
httpd py-ibm-watson r-tfisher
httperf py-ics r-tfmpvalue
httpie py-identify r-th-data
httping py-idna r-threejs
httpress py-idna-ssl r-tibble
hub py-illumina-utils r-tictoc
hudi py-ilmbase r-tidycensus
hugo py-imageio r-tidygraph
hunspell py-imageio-ffmpeg r-tidyr
hw-probe py-imagesize r-tidyselect
hwdata py-imgaug r-tidytree
hwloc py-iminuit r-tidyverse
hybpiper py-immutables r-tiff
hybrid-lambda py-importlib r-tigris
hybridsim py-importlib-metadata r-timedate
hydra py-importlib-resources r-tinytex
hydrogen py-incremental r-tmixclust
hyperfine py-inference-schema r-tmvnsim
hyperscan py-inheritance r-topgo
hyphen py-iniconfig r-treeio
hyphy py-iniparse r-triebeard
hypre py-installer r-trimcluster
hypre-cmake py-instrain r-truncdist
hztool py-intel-openmp r-truncnorm
i3 py-intensity-normalization r-trust
ibm-databroker py-interface-meta r-tseries
ibm-java py-intervaltree r-tsne
ibmisc py-invoke r-ttr
icarus py-iocapture r-tweenr
iceauth py-ipaddress r-txdb-hsapiens-ucsc-hg18-knowngene
icedtea py-ipdb r-txdb-hsapiens-ucsc-hg19-knowngene
icet py-ipycanvas r-tximport
ico py-ipyevents r-tximportdata
icu4c py-ipykernel r-tzdb
id3lib py-ipympl r-ucminf
idba py-ipyparallel r-udunits2
idl py-ipython r-units
iegenlib py-ipython-cluster-helper r-upsetr
ignite py-ipython-genutils r-urca
igprof py-ipyvtk-simple r-urltools
igraph py-ipywidgets r-usethis
igv py-irpf90 r-utf8
igvtools py-iso8601 r-uuid
ike-scan py-isodate r-uwot
ilmbase py-isort r-v8
ima-evm-utils py-itk r-variantannotation
imagemagick py-itsdangerous r-varselrf
imake py-jaconv r-vcd
imath py-jamo r-vcfr
imgui py-jaraco-functools r-vctrs
imlib2 py-javaproperties r-vegan
imp py-jdatetime r-vfs
impalajit-llvm py-jdcal r-vgam
impute2 py-jedi r-vioplot
infernal py-jeepney r-vipor
influxdb py-jellyfish r-viridis
iniparser py-jinja2 r-viridislite
inputproto py-jinja2-time r-visnetwork
intel py-jmespath r-vroom
intel-daal py-joblib r-vsn
intel-gpu-tools py-jplephem r-waldo
intel-gtpin py-jprops r-watermelon
intel-ipp py-jpype1 r-webshot
intel-llvm py-jsmin r-wgcna
intel-mkl py-json-get r-whisker
intel-mpi py-json5 r-withr
intel-mpi-benchmarks py-jsondiff r-wk
intel-oneapi-advisor py-jsonpatch r-xde
intel-oneapi-ccl py-jsonpath-ng r-xfun
intel-oneapi-compilers py-jsonpickle r-xgboost
intel-oneapi-compilers-classic py-jsonpointer r-xlconnect
intel-oneapi-dal py-jsonref r-xlconnectjars
intel-oneapi-dnn py-jsonschema r-xlsx
intel-oneapi-dpct py-junit-xml r-xlsxjars
intel-oneapi-dpl py-jupyter r-xmapbridge
intel-oneapi-inspector py-jupyter-client r-xml
intel-oneapi-ipp py-jupyter-console r-xml2
intel-oneapi-ippcp py-jupyter-core r-xnomial
intel-oneapi-mkl py-jupyter-packaging r-xopen
intel-oneapi-mpi py-jupyter-packaging11 r-xtable
intel-oneapi-tbb py-jupyter-packaging7 r-xts
intel-oneapi-vpl py-jupyter-server r-xvector
intel-oneapi-vtune py-jupyter-server-mathjax r-yaimpute
intel-parallel-studio py-jupyter-telemetry r-yaml
intel-pin py-jupyterhub r-yapsa
intel-tbb py-jupyterlab r-yaqcaffy
intel-xed py-jupyterlab-pygments r-yarn
interproscan py-jupyterlab-server r-yulab-utils
intltool py-jupyterlab-widgets r-zcompositions
ioapi py-jupytext r-zeallot
ior py-kaggle r-zip
iozone py-kaldiio r-zlibbioc
ip py-keras r-zoo
ip2 py-keras-applications r3d
ipcalc py-keras-preprocessing rabbitmq
iperf2 py-keras2onnx racket
iperf3 py-kerberos racon
ipopt py-keyboard raft
iproute2 py-keyring ragel
iptraf-ng py-keyrings-alt raja
iq-tree py-keystoneauth1 ramulator
irep py-kitchen randfold
isaac py-kiwisolver random123
isaac-server py-kmodes randrproto
isc-dhcp py-knack range-v3
isescan py-kombu rankstr
isl py-kornia rapidjson
iso-codes py-kosh raptor2
ispc py-kubernetes rasdaemon
istio py-labours rasqal
itensor py-lap ratel
itk py-lark ravel
itstool py-lark-parser raxml
itsx py-laspy raxml-ng
iwyu py-latexcodec ray
jackcess py-law rccl
jafka py-lazy rclone
jags py-lazy-object-proxy rdc
jali py-lazy-property rdkit
jansi py-lazyarray rdma-core
jansi-native py-leather rdp-classifier
jansson py-lerc rdptools
jasper py-lhsmdu re2
jbigkit py-liac-arff re2c
jblob py-libclang readfq
jchronoss py-libconf readline
jdk py-libensemble recola
jellyfish py-liblas recola-sm
jemalloc py-librosa recon
jetty-project py-lifelines recorder
jhpcn-df py-lightgbm recordproto
jimtcl py-ligo-segments redis
jline3 py-line-profiler reditools
jmol py-linecache2 redland
jogl py-lineenhancer redland-bindings
jose py-lit redset
jpegoptim py-lizard redundans
jq py-llnl-sina reframe
json-c py-llvmlite regcm
json-cwx py-lmdb relax
json-fortran py-lmfit relion
json-glib py-lmodule remhos
jsoncpp py-localcider rempi
jsonnet py-locket rename
jstorm py-lockfile rendercheck
jube py-logilab-common renderproto
judy py-louie repeatmasker
julea py-lru-dict repeatmodeler
julia py-lscsoft-glue repeatscout
junit4 py-luigi reprimand
k8 py-lws resourceproto
kadath py-lxml restic
kafka py-lz4 revbayes
kahip py-lzstring revocap-coupler
kaiju py-m2r revocap-refiner
kakoune py-macholib rgb
kaks-calculator py-machotools rhash
kaldi py-macs2 rinetd
kallisto py-maestrowf ripgrep
karma py-magic rivet
kassiopeia py-mailchecker rkt-base
kbd py-make rkt-cext-lib
kbproto py-mako rkt-compiler-lib
kcov py-mapclassify rkt-dynext-lib
kdiff3 py-markdown rkt-rackunit-lib
kea py-markdown-include rkt-scheme-lib
kealib py-markdown-it-py rkt-testing-util-lib
keepalived py-markdown2 rkt-zo-lib
keepassxc py-markovify rlwrap
kentutils py-markupsafe rmats
keyutils py-marshmallow rmgdft
kibana py-matplotlib rmlab
kicad py-matplotlib-inline rna-seqc
kim-api py-mayavi rnaquast
kinesis py-mccabe rnaz
kineto py-md-environ rng-tools
kitty py-mdanalysis rngstreams
kmergenie py-mdit-py-plugins rnpletal
kmod py-mechanize rocalution
knem py-meldmd rocblas
kokkos py-memory-profiler rocfft
kokkos-kernels py-memprof rocketmq
kokkos-kernels-legacy py-memray rocksdb
kokkos-legacy py-mercantile rockstar
kokkos-nvcc-wrapper py-merlin rocm-bandwidth-test
kraken py-meshio rocm-clang-ocl
kraken2 py-metasv rocm-cmake
krb5 py-methylcode rocm-dbgapi
krims py-metpy rocm-debug-agent
kripke py-mffpy rocm-device-libs
kubernetes py-mg-rast-tools rocm-gdb
kvasir-mpl py-mido rocm-opencl
kvtree py-mikado rocm-openmp-extras
kylin py-minio rocm-smi
ladot py-minrpc rocm-smi-lib
laghos py-misopy rocm-tensile
lame py-mistune rocm-validation-suite
lammps py-mixedhtseq rocminfo
landsfcutil py-mizani rocprim
lanl-cmake-modules py-ml-collections rocprofiler-dev
lapackpp py-mlperf-logging rocrand
last py-mlxtend rocsolver
lastz py-mmcv rocsparse
laszip py-mmtf-python rocthrust
latex2html py-mne roctracer-dev
latte py-mo-pack roctracer-dev-api
launchmon py-mock rodinia
lazyten py-modred roms
lbann py-moltemplate root
lbxproxy py-monotonic rose
lbzip2 py-monty ross
lcals py-more-itertools routino
lcgenv py-motmetrics rpcsvc-proto
lcio py-motor rpm
lcms py-mouseinfo rr
lcov py-moviepy rrdtool
ldak py-mpi4py rsbench
ldc py-mpld3 rsem
ldc-bootstrap py-mplhep rstart
legion py-mplhep-data rstudio
lemon py-mpmath rsync
leptonica py-mrcfile rsyslog
lerc py-msal rt-tests
less py-msal-extensions rtags
lesstif py-msgpack rtax
leveldb py-msgpack-numpy ruby
lftp py-msrest ruby-asciidoctor
lhapdf py-msrestazure ruby-erubis
lhapdf5 py-multi-key-dict ruby-gnuplot
lhapdfsets py-multidict ruby-hpricot
libabigail py-multipledispatch ruby-mustache
libaec py-multiprocess ruby-narray
libaio py-multiqc ruby-rake
libao py-munch ruby-rdiscount
libapplewm py-murmurhash ruby-ronn
libapreq2 py-mutagen ruby-rubyinline
libarchive py-mx ruby-svn2git
libasr py-mxfold2 ruby-terminal-table
libassuan py-myhdl ruby-thor
libatasmart py-mypy ruby-tmuxinator
libatomic-ops py-mypy-extensions ruby-unicode-display-width
libbacktrace py-mysql-connector-python ruby-xdg
libbeagle py-mysqlclient ruby-zentest
libbeato py-mysqldb1 runc
libbinio py-nanotime rust
libblastrampoline py-nara-wpe rust-bindgen
libbsd py-natsort sabre
libbson py-nbclassic saga-gis
libbytesize py-nbclient sailfish
libc py-nbconvert salmon
libcanberra py-nbdime salmon-tddft
libcap py-nbformat salome-configuration
libcap-ng py-nbmake salome-med
libcatalyst py-nbsphinx salome-medcoupling
libceed py-nc-time-axis sambamba
libcerf py-ndg-httpsclient samblaster
libcgroup py-neo samrai
libcint py-neobolt samtools
libcircle py-neotime sandbox
libconfig py-neovim-remote sarus
libconfuse py-nest-asyncio satsuma2
libcroco py-nestle savanna
libctl py-netaddr saws
libcudf py-netcdf4 sblim-sfcc
libcuml py-netifaces sbml
libcumlprims py-netket sbp
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libcyaml py-networkx scala
libdaemon py-neurokit2 scalasca
libdap4 py-neurolab scale
libdatrie py-neurora scallop
libdc1394 py-nibabel scalpel
libdeflate py-nibetaseries scan-for-matches
libdivsufsort py-nilearn scantailor
libdmx py-ninja scipoptsuite
libdrm py-nipype scitokens-cpp
libdwarf py-nistats scons
libeatmydata py-nitransforms scorec-core
libecpint py-niworkflows scorep
libedit py-nltk scorpio
libefence py-nodeenv scotch
libelf py-nose scr
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libepoxy py-nose2 scripts
libestr py-nosexcover scrnsaverproto
libev py-notebook scrot
libevdev py-npx scs
libevent py-ntlm-auth sctk
libevpath py-ntplib sdl2
libexif py-num2words sdl2-image
libfabric py-numba sdsl-lite
libfastcommon py-numcodecs seacas
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libffi py-numexpr3 sed
libffs py-numpy sensei
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libflame py-numpydoc sentieon-genomics
libfms py-nvidia-ml-py seqan
libfontenc py-nvidia-ml-py3 seqkit
libfs py-oauth2client seqprep
libfuse py-oauthlib seqtk
libfyaml py-odc-geo serf
libgain py-olefile serialbox
libgcrypt py-omegaconf sessreg
libgd py-onnx setserial
libgeotiff py-onnx-runtime setxkbmap
libgff py-onnxconverter-common sfcgal
libgit2 py-onnxmltools sfcio
libgpg-error py-ont-fast5-api sga
libgpuarray py-opcodes sgpp
libgridxc py-opencensus shadow
libgssglue py-opencensus-context shapeit
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libharu py-openmc shapelib
libhbaapi py-openpmd-validator shared-mime-info
libhio py-openpmd-viewer shark
libhugetlbfs py-openpyxl shc
libiberty py-openslide-python shengbte
libibumad py-opentuner sherpa
libical py-opppy shiny-server
libice py-opt-einsum shiro
libiconv py-or-tools shocklibs
libid3tag py-ordered-set shoremap
libidl py-ordereddict shortbred
libidn2 py-os-service-types shortstack
libimagequant py-oset showfont
libimobiledevice py-oslo-config shtools
libinih py-oslo-i18n shuffile
libint py-oslo-serialization sickle
libisal py-oslo-utils sicm
libiscsi py-osqp siesta
libjpeg py-overpy sigcpp
libjpeg-turbo py-owslib sigio
libjson py-pacifica-downloader signalp
libjwt py-pacifica-namespace signify
libkcapi py-pacifica-uploader silo
libkml py-packaging simde
libksba py-pager simgrid
liblas py-palettable simmetrix-simmodsuite
liblbfgs py-pamela simple-dftd3
liblbxutil py-pandas simplemoc
liblockfile py-pandocfilters simsipm
liblognorm py-param simul
liblouis py-parameterized simulationio
libluv py-paramiko sina
liblzf py-paramz singularity
libmacaroons py-parmed singularity-legacy
libmad py-parse singularityce
libmatheval py-parsedatetime sio
libmaus2 py-parsimonious sionlib
libmaxminddb py-parsl sirius
libmbim py-parso skilion-onedrive
libmcrypt py-partd skopeo
libmd py-particle sl
libmesh py-pastel slang
libmetalink py-path-py slate
libmicrodns py-pathlib sleef
libmicrohttpd py-pathlib2 slepc
libmmtf-cpp py-pathos slf4j
libmng py-pathspec slider
libmnl py-pathtools slirp4netns
libmo-unpack py-patool sloccount
libmodbus py-patsy slurm
libmonitor py-pauvre slurm-drmaa
libmpdclient py-pbr smalt
libnbc py-peachpy smartdenovo
libndp py-pem smartmontools
libnet py-pep517 smof
libnetfilter-conntrack py-pep8 smproxy
libnetfilter-cthelper py-pep8-naming snakemake
libnetfilter-cttimeout py-performance snap
libnetfilter-queue py-periodictable snap-berkeley
libnetworkit py-petastorm snap-korf
libnfnetlink py-petsc4py snappy
libnfs py-pexpect snbone
libnfsidmap py-phonenumbers sniffles
libnftnl py-phonopy snpeff
libnids py-pickle5 snphylo
libnl py-pickleshare snptest
libnotify py-picmistandard soapdenovo-trans
libnova py-picrust soapdenovo2
libnrm py-picrust2 soci
libnsl py-pid sofa-c
libogg py-pika sollve
liboldx py-pil sollya
libopts py-pillow solr
libp11 py-pillow-simd somatic-sniper
libpam py-pint sombrero
libpaper py-pip sonlib
libpcap py-pipits sortmerna
libpciaccess py-pispino sos
libpeas py-pkgconfig sosflow
libpfm4 py-pkginfo source-highlight
libpipeline py-plac sowing
libplist py-planar sox
libpmemobj-cpp py-planet sp
libpng py-platformdirs spack
libproxy py-plotly spades
libpsl py-plotnine span-lite
libpsml py-pluggy spark
libpthread-stubs py-ply sparrow
libpulsar py-pmw sparse
libqglviewer py-pmw-patched sparsehash
libqrencode py-pockets sparskit
libquo py-poetry sparta
libraw1394 py-poetry-core spath
librdkafka py-pomegranate spdlog
librelp py-pooch specfem3d-globe
libristra py-portalocker spectra
librmm py-portend spectre
librom py-poster spectrum-mpi
librsb py-pot speex
librsvg py-pox speexdsp
librtlsdr py-poyo spfft
librttopo py-ppft spglib
libsakura py-pre-commit sph2pipe
libsamplerate py-preshed spherepack
libseccomp py-pretrainedmodels spindle
libsecret py-prettytable spiner
libsharp py-priority spiral-package-fftx
libshm py-profilehooks spiral-package-hcol
libsigcpp py-proglog spiral-package-mpi
libsignal-protocol-c py-progress spiral-package-simt
libsigsegv py-progressbar2 spiral-software
libslirp py-projectq spla
libsm py-prometheus-client spm
libsndfile py-promise spot
libsodium py-prompt-toolkit sprng
libspatialindex py-protobuf sqlcipher
libspatialite py-prov sqlite
libspiro py-prwlock sqlite-jdbc
libsplash py-pspamm sqlitebrowser
libssh py-psutil sqoop
libssh2 py-psyclone squashfs
libsvm py-psycopg2 squashfs-mount
libszip py-ptyprocess squashfuse
libtar py-pudb squid
libtasn1 py-pulp sratoolkit
libtermkey py-pure-eval srilm
libthai py-pure-sasl sse2neon
libtheora py-py sshfs
libtiff py-py-cpuinfo sshpass
libtirpc py-py-spy ssht
libtlx py-py2bit ssmtp
libtomlc99 py-py2cairo sspace-longread
libtommath py-py2neo sspace-standard
libtool py-py4j sst-core
libtorrent py-py6s sst-dumpi
libtree py-pyaestro sst-elements
libuecc py-pyamg sst-macro
libunistring py-pyaml sst-transports
libunwind py-pyani stacks
libusb py-pyarrow staden-io-lib
libusbmuxd py-pyasn1 star
libuser py-pyasn1-modules star-ccm-plus
libuuid py-pyautogui starlight
libuv py-pybedtools starpu
libuv-julia py-pybids startup-notification
libvdwxc py-pybigwig stat
libverto py-pybind11 stata
libvips py-pybind11-stubgen static-analysis-suite
libvorbis py-pybobyqa stc
libvori py-pybrain steps
libvpx py-pybtex stinger
libvterm py-pybtex-docutils storm
libwebp py-pycairo stow
libwebsockets py-pycares strace
libwhich py-pycbc stream
libwindowswm py-pychecker strelka
libx11 py-pycifrw stress
libxau py-pycmd stress-ng
libxaw py-pycocotools string-view-lite
libxaw3d py-pycodestyle stringtie
libxc py-pycompadre stripack
libxcb py-pycortex structure
libxcomposite py-pycosat strumpack
libxcrypt py-pycparser su2
libxcursor py-pycrypto sublime-text
libxdamage py-pycuda subread
libxdmcp py-pycurl subversion
libxevie py-pydantic suite-sparse
libxext py-pydap sumaclust
libxfixes py-pydatalog sumo
libxfont py-pydeprecate sundials
libxfont2 py-pydeps suntans
libxfontcache py-pydicom superchic
libxft py-pydispatcher superlu
libxi py-pydmd superlu-dist
libxinerama py-pydocstyle superlu-mt
libxkbcommon py-pydoe supernova
libxkbfile py-pydoe2 survey
libxkbui py-pydot sw4lite
libxml2 py-pydot2 swan
libxmu py-pydotplus swap-assembler
libxp py-pydv swarm
libxpm py-pyeda swfft
libxpresent py-pyelftools swftools
libxprintapputil py-pyem swiftsim
libxprintutil py-pyepsg swig
libxrandr py-pyface swipl
libxrender py-pyfaidx symengine
libxres py-pyfasta symlinks
libxscrnsaver py-pyfftw sympol
libxshmfence py-pyfiglet sys-sage
libxslt py-pyfits sysbench
libxsmm py-pyflakes syscalc
libxstream py-pyfr sysfsutils
libxt py-pygdal sysget
libxtrap py-pygdbmi sysstat
libxtst py-pygelf systemc
libxv py-pygeos systemtap
libxvmc py-pygetwindow sz
libxxf86dga py-pygit2 tabix
libxxf86misc py-pygithub tajo
libxxf86vm py-pyglet talass
libyaml py-pygments talloc
libyogrt py-pygments-pytest tamaas
libzip py-pygobject tangram
libzmq py-pygps tantan
liggghts py-pygpu tar
lighttpd py-pygraphviz targetp
ligra py-pygresql task
likwid py-pygtk taskd
linkphase3 py-pygtrie taskflow
linktest py-pyh5md tasmanian
linsys-v py-pyheadtail tassel
linux-headers py-pyinstrument tau
linux-pam py-pyinstrument-cext tauola
lis py-pyjnius tbl2asn
listres py-pyjwt tcl
lizard py-pyke tcl-itcl
lksctp-tools py-pykml tcl-tcllib
llvm py-pykokkos-base tcl-tclxml
llvm-amdgpu py-pykwalify tclap
llvm-doe py-pylev tcoffee
llvm-openmp py-pyliblzma tcpdump
llvm-openmp-ompt py-pylikwid tcptrace
lm-sensors py-pylint tcsh
lmbench py-pylops tdengine
lmdb py-pymatgen tealeaf
lmod py-pymc3 teckit
lndir py-pymeeus tecplot
log4c py-pyminifier telegraf
log4cplus py-pymol tempestremap
log4cpp py-pymongo templight
log4cxx py-pymoo templight-tools
logrotate py-pymorph tengine
logstash py-pympler tensorflow-serving-client
loki py-pymsgbox tensorpipe
looptools py-pymumps termcap
lordec py-pymysql tesseract
lorene py-pynacl testdfsio
lp-solve py-pynio testu01
lrslib py-pynisher tetgen
lrzip py-pynn tethex
lsf py-pynvim texinfo
lshw py-pynvml texlive
lsof py-pyodbc texstudio
lsscsi py-pyomo textparser
ltp py-pyopencl tfel
ltr-retriever py-pyopenssl the-platinum-searcher
ltrace py-pypar the-silver-searcher
lua py-pyparsing thepeg
lua-bit32 py-pypeflow thornado-mini
lua-bitlib py-pypeg2 thrift
lua-ffi py-pyperclip thrust
lua-lpeg py-pyperf tidy-html5
lua-luafilesystem py-pypinyin tig
lua-luajit py-pyprecice time
lua-luajit-openresty py-pyprof2html timedatex
lua-luaposix py-pyproj timemory
lua-mpack py-pypulse tini
lua-sol2 py-pyqi tinker
lucene py-pyqt-builder tinygltf
luit py-pyqt4 tinyobjloader
lulesh py-pyqt5 tinyxml
lumpy-sv py-pyqt5-sip tinyxml2
lustre py-pyquaternion tioga
lvarray py-pyrad tippecanoe
lvm2 py-pyrect tiptop
lwgrp py-pyrfr tix
lwm2 py-pyro-api tixi
lwtnn py-pyro-ppl tk
lxc py-pyro4 tkrzw
lynx py-pyrosar tldd
lz4 py-pyrr tmalign
lzma py-pyrsistent tmhmm
lzo py-pysam tmux
lzop py-pyscaf tomcat
m4 py-pyscf toml-f
macfuse py-pyscipopt toml11
macsio py-pyscreeze tophat
mad-numdiff py-pyserial torque
madgraph5amc py-pyshp totalview
madx py-pyside tpm2-tss
mafft py-pyside2 tppred
magics py-pysimdjson tracer
magma py-pysmartdl tracy
mahout py-pysocks tracy-client
makedepend py-pysolar tramonto
maker py-pyspark transabyss
mallocmc py-pyspellchecker transdecoder
maloc py-pysqlite transposome
man-db py-pysqlite3 transrate
manta py-pystac transset
mapnik py-pystan trapproto
mapserver py-pysurfer tree
mapsplice2 py-pytailf tree-sitter
maq py-pytaridx treelite
margo py-pytecplot treesub
mariadb py-pytest trf
mariadb-c-client py-pytest-arraydiff triangle
mark py-pytest-asyncio trident
masa py-pytest-benchmark trilinos
mash py-pytest-cache trilinos-catalyst-ioss-adapter
masurca py-pytest-check-links trimal
mathematica py-pytest-cov trimgalore
matio py-pytest-cpp trimmomatic
matlab py-pytest-doctestplus trinity
maven py-pytest-flake8 trinotate
maverick py-pytest-flakes trnascan-se
mawk py-pytest-forked truchas
mbdyn py-pytest-html tskit
mbedtls py-pytest-httpbin tulip
mc py-pytest-isort turbine
mcl py-pytest-metadata turbomole
mcpp py-pytest-mock turnserver
mctc-lib py-pytest-mypy tut
mcutils py-pytest-openfiles twm
mdsplus py-pytest-parallel tycho2
mdtest py-pytest-pep8 typhon
med py-pytest-qt typhonio
meep py-pytest-random-order uchardet
mefit py-pytest-runner ucx
megadock py-pytest-timeout udunits
megahit py-pytest-xdist ufo-core
melissa py-python-benedict ufo-filters
memaxes py-python-box ufs-utils
memcached py-python-certifi-win32 ufs-weather-model
meme py-python-constraint uftrace
memkind py-python-crfsuite umap
memsurfer py-python-daemon umesimd
memtester py-python-dateutil umoci
meraculous py-python-docs-theme umpire
mercurial py-python-dotenv unblur
mercury py-python-editor uncrustify
mesa py-python-engineio unibilium
mesa-demos py-python-fmask unifdef
mesa-glu py-python-fsutil unifyfs
mesa18 py-python-gitlab unigen
meshkit py-python-igraph unison
meshtool py-python-jenkins units
meson py-python-json-logger unittest-cpp
mesquite py-python-keystoneclient universal-ctags
metabat py-python-ldap unixodbc
metall py-python-levenshtein unqlite
metaphysicl py-python-logstash unrar
metis py-python-louvain unuran
metkit py-python-lzo unzip
mfem py-python-magic upcxx
mg py-python-mapnik upp
mgis py-python-markdown-math uqtk
microbiomeutil py-python-meep uriparser
microsocks py-python-memcached usbutils
migraphx py-python-oauth2 usearch
migrate py-python-picard userspace-rcu
mii py-python-rapidjson utf8cpp
millepede py-python-slugify utf8proc
mimalloc py-python-socketio util-linux
minc-toolkit py-python-subunit util-linux-uuid
minced py-python-swiftclient util-macros
mindthegap py-python-utils uvw
miniaero py-python-xlib vacuumms
miniamr py-python-xmp-toolkit valgrind
miniapp-ascent py-python3-xlib vampirtrace
miniasm py-pythonqwt vapor
miniconda2 py-pythonsollya vardictjava
miniconda3 py-pythran variorum
minife py-pytimeparse varnish-cache
miniforge3 py-pytoml varscan
minigan py-pytools vasp
minighost py-pytorch-gradual-warmup-lr vbfnlo
minigmg py-pytorch-lightning vc
minimap2 py-pytorch-sphinx-theme vcftools
minimd py-pyts vcsh
minio py-pytweening vdt
miniqmc py-pytz veccore
minisign py-pyudev vecgeom
minismac2d py-pyugrid veclibfort
minitri py-pyupgrade vecmem
minivite py-pyusb vectorclass-version2
minixyce py-pyutilib vegas2
minizip py-pyvcf veloc
minuit py-pyvista velvet
miopen-hip py-pyvistaqt velvetoptimiser
miopen-opencl py-pywavelets verilator
miopen-tensile py-pywcs verrou
miopengemm py-pyworld vesta
mira py-pyyaml vgm
miranda py-pyzmq videoproto
mirdeep2 py-qiskit-aer viennarna
mitofates py-qiskit-terra viewres
mitos py-qmtest vifi
mivisionx py-qpth vigra
mixcr py-qrcode vim
mkfontdir py-qsymm virtest
mkfontscale py-qtawesome virtualgl
mlhka py-qtconsole virtuoso
mlirmiopen py-qtpy visit
mlocate py-quantities visit-cgns
mlperf-deepcam py-quart visit-ffp
mmg py-quast visit-mfem
mmv py-quaternionic visit-silo
moab py-queryablelist visit-unv
mochi-margo py-questionary vite
mochi-thallium py-radiant-mlhub vizglow
model-traits py-radical-entk vmatch
modeltest-ng py-radical-gtod vmc
modern-wheel py-radical-pilot vmd
modylas py-radical-saga volk
mofem-cephas py-radical-utils voropp
mofem-fracture-module py-ranger-fm votca
mofem-minimal-surface-equation py-rapidfuzz votca-csg
mofem-users-modules py-rarfile votca-csg-tutorials
mokutil py-rasterio votca-csgapps
molcas py-ratelim votca-ctp
molden py-ratelimiter votca-tools
mongo-c-driver py-raven votca-xtp
mongo-cxx-driver py-ray vpfft
mongodb-async-driver py-rbtools vpic
mono py-rdflib vsearch
montage py-rdt vsftpd
moosefs py-readme-renderer vt
moreutils py-recommonmark vtable-dumper
mosh py-redis vtk
mosquitto py-regex vtk-h
mothur py-reindent vtk-m
motif py-reportlab vvtest
motioncor2 py-repoze-lru w3emc
mount-point-attributes py-reproject w3m
mozjs py-requests w3nco
mpark-variant py-requests-ftp wannier90
mpas-model py-requests-futures warpx
mpc py-requests-mock watch
mpdecimal py-requests-ntlm wayland
mpe2 py-requests-oauthlib wayland-protocols
mpest py-requests-toolbelt wcs
mpfi py-requests-unixsocket wcslib
mpfr py-resampy webbench
mpi-bash py-responses weechat
mpibind py-restview weighttp
mpich py-resultsfile wget
mpifileutils py-retry wgrib2
mpilander py-retry-decorator wgsim
mpileaks py-retrying which
mpip py-retworkx whizard
mpir py-rfc3986 wi4mpi
mpitrampoline py-rich windowswmproto
mpiwrapper py-rios wiredtiger
mpix-launch-swift py-rioxarray wireshark
mpl py-rise wonton
mpt py-rmm wordnet
mptensor py-rnacocktail workrave
mrbayes py-rnc2rng wps
mrbench py-robotframework wrf
mrchem py-rope wrf-io
mrcpp py-rosdep wrk
mrnet py-rosdistro wsmancli
mrtrix3 py-rosinstall wt
mscgen py-rosinstall-generator wtdbg2
msgpack-c py-rospkg wxparaver
mshadow py-rply wxpropgrid
msmc py-rpy2 wxwidgets
msmc2 py-rq x11perf
mstk py-rsa x264
mt-metis py-rsatoolbox xabclib
mujoco py-rseqc xalan-c
multitail py-rst2pdf xapian-core
multitime py-rtree xauth
multiverso py-ruamel-ordereddict xbacklight
mumax py-ruamel-yaml xbiff
mummer py-ruamel-yaml-clib xbitmaps
mummer4 py-rx xbraid
mumps py-s3cmd xcalc
munge py-s3fs xcb-demo
muparser py-s3transfer xcb-proto
muparserx py-sacremoses xcb-util
muscle py-saga-python xcb-util-cursor
muse py-salib xcb-util-errors
music py-sanic xcb-util-image
musl py-scandir xcb-util-keysyms
muster py-schema xcb-util-renderutil
mutationpp py-scientificpython xcb-util-wm
mvapich2 py-scikit-build xcb-util-xrm
mvapich2-gdr py-scikit-fmm xcfun
mvapich2x py-scikit-fuzzy xclip
mxm py-scikit-image xclipboard
mxml py-scikit-learn xclock
mxnet py-scikit-learn-extra xcmiscproto
mysql py-scikit-optimize xcmsdb
mysqlpp py-scinum xcompmgr
n2p2 py-scipy xconsole
nacos py-scooby xcursor-themes
nag py-scoop xcursorgen
nalu py-scp xdbedizzy
nalu-wind py-scs xdelta
namd py-sdmetrics xditview
nano py-sdv xdm
nanoflann py-seaborn xdmf3
nanomsg py-secretstorage xdotool
nanopb py-segmentation-models-pytorch xdpyinfo
nasm py-selectors34 xdriinfo
nauty py-selenium xedit
nbdkit py-semantic-version xerces-c
ncbi-magicblast py-semver xeus
ncbi-rmblastn py-send2trash xev
ncbi-toolkit py-sentencepiece xextproto
nccl py-sentry-sdk xeyes
nccl-tests py-seqeval xf86bigfontproto
nccmp py-seriate xf86dga
ncdu py-serpent xf86dgaproto
ncftp py-setproctitle xf86driproto
ncio py-setupmeta xf86miscproto
ncl py-setuptools xf86rushproto
nco py-setuptools-cpp xf86vidmodeproto
ncompress py-setuptools-git xfd
ncurses py-setuptools-rust xfindproxy
ncview py-setuptools-scm xfontsel
ndiff py-setuptools-scm-git-archive xforms
neartree py-sfepy xfs
nek5000 py-sgp4 xfsdump
nekbone py-sh xfsinfo
nekcem py-shapely xfsprogs
neko py-shellingham xfwp
nekrs py-shiboken xgamma
nektar py-shiboken2 xgboost
nektools py-shortuuid xgc
nemsio py-shroud xhmm
nemsiogfs py-shtab xhost
neo4j py-sierrapy xineramaproto
neovim py-simplegeneric xinit
nest py-simplejson xinput
net-snmp py-simplekml xios
netcdf-c py-singledispatch xkbcomp
netcdf-cxx py-sip xkbdata
netcdf-cxx4 py-six xkbevd
netcdf-fortran py-skl2onnx xkbprint
netdata py-slepc4py xkbutils
netgauge py-slurm-pipeline xkeyboard-config
netgen py-smac xkill
netkit-ftp py-smart-open xlc
netlib-lapack py-smartypants xlf
netlib-scalapack py-smmap xload
netlib-xblas py-snappy xlogo
netpbm py-sncosmo xlsatoms
netperf py-sniffio xlsclients
nettle py-snowballstemmer xlsfonts
neuron py-snuggs xmag
newt py-sobol-seq xman
nextflow py-sonlib xmessage
nfft py-sortedcollections xmh
nfs-ganesha py-sortedcontainers xmlf90
nfs-utils py-soundfile xmlrpc-c
nghttp2 py-soupsieve xmlto
nginx py-spacy xmodmap
ngmerge py-spacy-models-en-core-web-sm xmore
ngmlr py-spacy-models-en-vectors-web-lg xnnpack
ngspice py-sparse xorg-cf-files
nicstat py-spatialist xorg-docs
nim py-spatialite xorg-gtest
ninja py-spdlog xorg-server
ninja-fortran py-spectra xorg-sgml-doctools
nix py-spectral xphelloworld
njet py-speech-recognition xplor-nih
nlcglib py-spefile xplsprinters
nlohmann-json py-spgl1 xpmem
nlohmann-json-schema-validator py-spglib xpr
nlopt py-spherical xprehashprinterlist
nmap py-sphinx xprop
nn-c py-sphinx-argparse xproperty
nnpack py-sphinx-autodoc-typehints xproto
nnvm py-sphinx-bootstrap-theme xproxymanagementprotocol
node-js py-sphinx-copybutton xqilla
notmuch py-sphinx-gallery xrandr
npb py-sphinx-multiversion xrdb
npm py-sphinx-rtd-theme xrefresh
npth py-sphinx-tabs xrootd
nrm py-sphinxautomodapi xrx
ns-3-dev py-sphinxcontrib-applehelp xsbench
nseg py-sphinxcontrib-bibtex xscope
nsimd py-sphinxcontrib-devhelp xsd
nspr py-sphinxcontrib-htmlhelp xsdk
nss py-sphinxcontrib-issuetracker xsdk-examples
ntirpc py-sphinxcontrib-jsmath xset
ntl py-sphinxcontrib-mermaid xsetmode
ntpoly py-sphinxcontrib-napoleon xsetpointer
numactl py-sphinxcontrib-programoutput xsetroot
numamma py-sphinxcontrib-qthelp xsimd
numap py-sphinxcontrib-serializinghtml xsm
numdiff py-sphinxcontrib-trio xstdcmap
nut py-sphinxcontrib-websupport xtensor
nvdimmsim py-sphobjinv xtensor-python
nvhpc py-spyder xterm
nvptx-tools py-spykeutils xtl
nvshmem py-sqlalchemy xtrans
nvtop py-sqlalchemy-stubs xtrap
nwchem py-sqlalchemy-utils xts
nyancat py-sqlparse xvidtune
ocaml py-srsly xvinfo
ocamlbuild py-sshtunnel xwd
occa py-stack-data xwidgets
oce py-statsmodels xwininfo
oci-systemd-hook py-stdlib-list xwud
ocl-icd py-stestr xxd-standalone
oclgrind py-stevedore xxhash
oclint py-stomp-py xyce
oclock py-stopit xz
octa py-storm yajl
octave py-stratify yaksa
octave-arduino py-stsci-distutils yambo
octave-control py-submitit yaml-cpp
octave-gsl py-subprocess32 yara
octave-instrctl py-subrosa yarn
octave-io py-svgpathtools yasm
octave-optim py-svgutils ycsb
octave-quaternion py-svgwrite yoda
octave-signal py-symengine yorick
octave-splines py-symfit z-checker
octave-statistics py-sympy z3
octave-struct py-syned zabbix
octave-symbolic py-systemd-python zfp
octopus py-tables zfs
odc py-tabulate zig
of-catalyst py-tap-py zip
of-precice py-tatsu zipkin
ome-common-cpp py-tblib zlib
ome-files-cpp py-templateflow zlib-ng
ome-model py-tempora zoltan
omega-h py-tenacity zookeeper
ompss py-tensorboard zookeeper-benchmark
ompt-openmp py-tensorboard-data-server zpares
oneapi-igc py-tensorboard-plugin-wit zsh
oneapi-level-zero py-tensorboardx zstd
onednn py-tensorflow zstr
oniguruma py-tensorflow-datasets zziplib
onnx py-tensorflow-estimator None
ont-albacore py-tensorflow-hub None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

7zip

Homepage:
Spack package:
Versions:
21.07
Description:
7-Zip is a file archiver for Windows

abacus

Homepage:
Spack package:
Versions:
develop, 2.2.3, 2.2.2, 2.2.1, 2.2.0
Build Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Link Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Run Dependencies:
mpi
Description:
ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.6.1, 9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20211102.0, 20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Build Dependencies:
gnuconfig
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 19.2.0, 19.1.0, 19.0.0, 18.0.0, 17.1.0, 17.0.0, 16.0.0, 15.1.0, 15.0.1, 15.0.0, 14.1.0, 14.0.0, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, acts-dd4hep, autodiff, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnx-runtime, py-pybind11, py-pytest, root
Link Dependencies:
cuda, acts-dd4hep, autodiff, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnx-runtime, py-pybind11, py-pytest, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

acts-dd4hep

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
cmake, dd4hep
Link Dependencies:
dd4hep
Description:
Glue library to connect Acts to DD4hep

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.1, 0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.8.1, 2.8.0, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cuda, cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
cuda, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
gnuconfig, bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
gnuconfig, automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gnuconfig, gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Build Dependencies:
gnuconfig
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agile

Homepage:
Spack package:
Versions:
1.5.1
Build Dependencies:
gnuconfig, hepmc, boost
Link Dependencies:
hepmc, boost
Description:
AGILe is A Generator Interface Library (& executable), i.e. a uniform object oriented C++ interface for a variety of Fortran-based Monte Carlo event generators..

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
gnuconfig
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.7.2, 2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, boost
Link Dependencies:
cuda, cmake, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alpgen

Homepage:
Spack package:
Versions:
2.1.4
Build Dependencies:
cmake
Description:
A collection of codes for the generation of multi-parton processes in hadronic collisions.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, 1.0.9, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Build Dependencies:
gnuconfig
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0-lbann, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, parallel-netcdf, tcsh, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, parallel-netcdf, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amdblis

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, blas, python
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
gnuconfig, numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

ampt

Homepage:
Spack package:
Versions:
2.26-t9b_atlas, 2.26-t9
Description:
A Multi-Phase Transport (AMPT) model is a Monte Carlo transport model for nuclear collisions at relativistic energies.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, hypre, masa, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, hypre, masa, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 22.06, 22.05, 22.04, 22.03, 22.02, 22.01, 21.12, 21.11, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand, rocprim
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrfinder

Homepage:
Spack package:
Versions:
3.10.30, 3.10.24
Build Dependencies:
blast-plus, hmmer, curl
Link Dependencies:
blast-plus, hmmer, curl
Description:
NCBI AMRFinderPlus: This software and the accompanying database identify acquired antimicrobial resistance genes in bacterial protein and/or assembled nucleotide sequences as well as known resistance-associated point mutations for several taxa. With AMRFinderPlus we added select members of additional classes of genes such as virulence factors, biocide, heat, acid, and metal resistance genes.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.14, 0.10
Build Dependencies:
gnuconfig, pkgconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.935, 0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
gnuconfig, python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
20220205, 2.3.5, 2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
3.2.0, 3.1.0, 3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : https://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, gl, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
gl, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.4, 0.0.3, 0.0.2, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
3.0.2, 2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Link Dependencies:
zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
gnuconfig, swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apktool

Homepage:
Spack package:
Versions:
2.6.1, 2.6.0
Build Dependencies:
java
Run Dependencies:
java
Description:
A tool for reverse engineering 3rd party, closed, binary Android apps.

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apptainer

Homepage:
Spack package:
Versions:
main, 1.0.2
Build Dependencies:
pkgconfig, go, uuid, libgpg-error, libseccomp, git, cryptsetup
Link Dependencies:
go, uuid, libgpg-error, libseccomp, git
Run Dependencies:
squashfs, shadow, cryptsetup
Description:
Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. Needs post-install chmod/chown steps to enable full functionality. See package definition or `spack-build- out.txt` build log for details, e.g.:: tail -15 $(spack location -i apptainer)/.spack/spack-build-out.txt

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Build Dependencies:
gnuconfig
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.6, 0.5.2, 0.5
Build Dependencies:
cuda, cmake, fmt, nlohmann-json, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, fmt, nlohmann-json, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy, py-pybind11
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.2, 1.1, 1.0, 0.9-beta
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, rocthrust, kokkos, trilinos
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, rocthrust, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Build Dependencies:
gnuconfig
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Build Dependencies:
gnuconfig
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.36.0, 1.35.0, 1.34.0
Build Dependencies:
gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
22.0.1
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
22.0.1, 22.0, 21.1.3, 21.1.2, 21.1.1, 21.1, 21.0.3, 21.0.2, 21.0.1, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

armpl

Homepage:
Spack package:
Versions:
22.0.1_gcc-11.2, 22.0.1_gcc-10.2, 22.0.1_gcc-9.3, 22.0.1_gcc-8.2, 22.0.1_gcc-7.5
Description:
Arm Performance Libraries provides optimized standard core math libraries for high-performance computing applications on Arm processors.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.8.1, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
8.0.0, 7.0.0, 4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python, autoconf, automake, libtool
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
Build Dependencies:
gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.21.0, 1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2, 1.18.1, 1.18.0, 1.17.0, 1.16.1, 1.16.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Build Dependencies:
gnuconfig
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.2.4, 5.2.3, 5.2.2, 5.2.1, 5.1.4, 5.1.3, 5.0.1, 4.0.1
Build Dependencies:
cmake, pkgconfig, zlib
Link Dependencies:
zlib
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.7.1, 5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
5.1.3, 5.1.0, 5.0.2, 5.0.0, 4.5.2, 4.5.0, 4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, rsync
Link Dependencies:
rsync, comgr, hsa-rocr-dev, elf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.2.0.1, 4.2.0.0, 4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
gnuconfig, lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Build Dependencies:
gnuconfig
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59
Build Dependencies:
gnuconfig, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2022.02.11, 2019.01.06
Build Dependencies:
gnuconfig
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodiff

Homepage:
Spack package:
Versions:
0.6.4, 0.5.13
Build Dependencies:
cmake, eigen, py-pybind11
Link Dependencies:
eigen
Run Dependencies:
py-pybind11
Description:
autodiff is automatic differentiation made easier for C++.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
gnuconfig, pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.5, 1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
gnuconfig, autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.7, 2.11.6, 2.11.5, 2.11.4, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-pip, py-wheel, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.17.10, 2.16.1
Build Dependencies:
gnuconfig, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree, zlib
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, lua, scr, kvtree, dtcmp, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, lua, scr, kvtree, dtcmp, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.1.0, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
gnuconfig, glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

bacio

Homepage:
Spack package:
Versions:
2.5.0, 2.4.1
Build Dependencies:
cmake
Description:
The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.2, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake, jsoncpp
Link Dependencies:
zlib, jsoncpp
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.15, 1.0.13
Build Dependencies:
zlib, git
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gnuconfig, gmp, ntl, llvm, libyaml
Link Dependencies:
gmp, ntl, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.4, 4.3
Build Dependencies:
gnuconfig, ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
gnuconfig, automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batchedblas

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
blas
Link Dependencies:
blas
Description:
Batched BLAS is one of the new approaches for a task-based BLAS invocation, and it is defined as a new interface that allows users to execute multiple independent BLAS operations as a single subroutine call

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

baurmc

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig
Description:
Baur's Monte Carlo package for simulating W+ gamma production at hadron colliders provides full electroweak calculation upto O(alpha) and contains higher order QCD corrections as well.

bazel

Homepage:
Spack package:
Versions:
4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.0, 0.1.4, 0.1.1
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
gnuconfig, ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.14, 1.13, 1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gnuconfig, gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.6, 8.0.0, 7.6.0, 7.4.4
Build Dependencies:
gnuconfig, libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.4, 5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
3.0.19, 3.0.18, 3.0.0, 2.2.0, 2.0.4
Build Dependencies:
cmake, fmt, grpc, nlohmann-json, spdlog, python
Link Dependencies:
fmt, grpc, nlohmann-json, spdlog
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Build Dependencies:
gnuconfig
Description:
Oracle Berkeley DB

berkeleygw

Homepage:
Spack package:
Versions:
3.0.1, 3.0, 2.1
Build Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py, fftw, amdfftw, openblas, amdblis
Link Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, fftw, amdfftw, openblas, amdblis
Run Dependencies:
python, py-numpy, py-setuptools, py-h5py
Test Dependencies:
perl
Description:
BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
gnuconfig, flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigdft-atlab

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3
Build Dependencies:
gnuconfig, mpi, openbabel, bigdft-futile
Link Dependencies:
mpi, openbabel, bigdft-futile
Description:
BigDFT-atlab: library for ATomic related operations.

bigdft-chess

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-CheSS: A module for performing Fermi Operator Expansions via Chebyshev Polynomials.

bigdft-core

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Link Dependencies:
cuda, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Run Dependencies:
python
Description:
BigDFT-core: the core components of BigDFT, an electronic structure calculation based on Daubechies wavelets.

bigdft-futile

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, libyaml, py-pyyaml, mpi
Link Dependencies:
cuda, blas, lapack, libyaml, py-pyyaml, mpi
Run Dependencies:
python
Description:
BigDFT-futile: a library handling most common FORTRAN low-level operations, like memory managment, profiling routines, I/O operations. It also supports yaml output and parsing for fortran programs. It also provides wrappers routines to MPI and linear algebra operations. This library is intensively used in BigDFT packages.

bigdft-libabinit

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, mpi, libxc, bigdft-futile
Link Dependencies:
mpi, libxc, bigdft-futile
Run Dependencies:
python
Description:
BigDFT-libABINIT: this is a subsection of files coming from ABINIT software package, to which BigDFT has been coupled since the early days. It handles different parts like symmetries, ewald corrections, PAW routines, density and potential mixing routines and some MD minimizers.

bigdft-psolver

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-Psolver: a flexible real-space Poisson Solver based on Interpolating Scaling Functions. It constitutes a fundamental building block of BigDFT code, and it can also be used separately and linked to other codes.

bigdft-spred

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Link Dependencies:
blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Run Dependencies:
python
Description:
BigDFT-spred: a library for structure prediction tools, that is compiled on top of BigDFT routines.

bigdft-suite

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Link Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Run Dependencies:
python
Description:
BigDFT-suite: the complete suite of BigDFT for electronic structure calculation based on Daubechies wavelets.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
gnuconfig, pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.38, 2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
gnuconfig, zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
gnuconfig, boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
gnuconfig, diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
gnuconfig, glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blackhat

Homepage:
Spack package:
Versions:
0.9.9
Build Dependencies:
gnuconfig, qd, python
Link Dependencies:
qd, python
Run Dependencies:
python
Description:
Blackhat MC generator

blaspp

Homepage:
Spack package:
Versions:
master, 2022.05.00, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
gnuconfig, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
37, 35
Build Dependencies:
libpng, libuuid, mysql-client
Link Dependencies:
libpng, libuuid, mysql-client
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas, lapack, boost, hpx
Link Dependencies:
blas, lapack, boost, hpx
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
gnuconfig, python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Build Dependencies:
gnuconfig
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.5.1, 0.5.0, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20220330, 20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main, 2.8.1
Build Dependencies:
gnuconfig, autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, py-virtualenv, py-pip, py-wheel, zlib, libsigsegv
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib, libsigsegv
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Build Dependencies:
gnuconfig
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.79.0, 1.78.0, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.19.1, 2.19.0, 2.18.2, 2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-popgen

Homepage:
Spack package:
Versions:
2.4.1
Build Dependencies:
cmake, bpp-seq
Link Dependencies:
bpp-seq
Description:
The Bio++ Population Genetics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bricks

Homepage:
Spack package:
Versions:
r0.1
Build Dependencies:
cmake, autoconf, automake, libtool, opencl-clhpp, cuda, mpi
Link Dependencies:
opencl-clhpp, cuda, mpi
Description:
Bricks is a data layout and code generation framework, enabling performance-portable stencil computations across a multitude of architectures.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brunsli

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake
Description:
Brunsli is a lossless JPEG repacking library.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.6.1, 0.6.0, 0.5.0, 0.4.1, 0.4.0, 0.3.3, 0.3.1
Build Dependencies:
gnuconfig, pkgconfig, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Build Dependencies:
gnuconfig
Description:
A Binary Decision Diagram library.

bufr

Homepage:
Spack package:
Versions:
11.5.0
Build Dependencies:
cmake
Description:
The NOAA bufr library contains subroutines, functions and other utilities that can be used to read (decode) and write (encode) data in BUFR, which is a WMO standard format for the exchange of meteorological data. This is part of the NCEPLIBS project.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 2.1.1, 2.1.0, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig, libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
20210808
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
gnuconfig, tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.1, 1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop, 2.0.4, 2.0.2, 2.0.1
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Build Dependencies:
gnuconfig
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

c3d

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
cmake, itk
Link Dependencies:
itk
Description:
Image processing and conversion tool based on ITK.

ca-certificates-mozilla

Homepage:
Spack package:
Versions:
2022-03-29, 2022-03-18, 2022-02-01, 2021-10-26, 2021-09-30, 2021-07-05, 2021-05-25, 2021-04-13, 2021-01-19, 2020-12-08, 2020-10-14, 2020-07-22, 2020-06-24, 2020-01-01, 2019-11-27, 2019-10-16, 2019-08-28
Description:
The Mozilla CA certificate store in PEM format

cabana

Homepage:
Spack package:
Versions:
master, 0.4.0, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, googletest, kokkos-legacy, kokkos, arborx, hypre-cmake, heffte, mpi
Link Dependencies:
kokkos-legacy, kokkos, arborx, hypre-cmake, heffte, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cuda, cmake, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
cuda, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.4, 1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
gnuconfig, libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
gnuconfig, cairo, libsigcpp, pkgconfig
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cuda, cmake, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow, python
Link Dependencies:
cuda, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
main, 2022.03.0, 0.3.0, 0.2.3, 0.2.2, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, cub, blt
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cub, blt
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1, 0.0
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cans

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2, 1.1.0
Build Dependencies:
mpi, fftw
Link Dependencies:
mpi, fftw
Description:
CaNS (Canonical Navier-Stokes) is a code for massively-parallel numerical simulations of fluid flows. It aims at solving any fluid flow of an incompressible, Newtonian fluid that can benefit from a FFT-based solver for the second-order finite-difference Poisson equation in a 3D Cartesian grid.

cantera

Homepage:
Spack package:
Versions:
2.5.1, 2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.8.0, 0.7.0
Build Dependencies:
gnuconfig
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai, cub
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0.1, 3.11.11, 3.11.6, 3.11.5, 2.2.19
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks. For versions 5.7 and greater use the paraview package.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.1, 3.0.0-preview4, 3.0.0-preview3, 2.13.8, 2.13.7, 2.13.6, 2.13.5, 2.13.4, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
gnuconfig, coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cbflib

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
m4
Description:
CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.