Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 6200 mainline packages:

3dtk omega-h py-tempora
3proxy ompss py-tenacity
abduco ompt-openmp py-tensorboard
abi-compliance-checker onednn py-tensorboard-plugin-wit
abi-dumper oniguruma py-tensorboardx
abinit onnx py-tensorflow
abseil-cpp ont-albacore py-tensorflow-datasets
abyss oommf py-tensorflow-estimator
accfft op2-dsl py-tensorflow-hub
acct opa-psm2 py-tensorflow-metadata
accumulo opam py-tensorflow-probability
ace opari2 py-termcolor
ack open-iscsi py-terminado
acl open-isns py-terminaltables
acpica-tools open3d py-tern
acpid openal-soft py-testfixtures
activeharmony openbabel py-testinfra
activemq openblas py-testpath
acts opencarp py-testrepository
addrwatch opencascade py-testresources
adept-utils opencl-c-headers py-testscenarios
adf opencl-clhpp py-testtools
adiak opencl-headers py-tetoolkit
adios opencoarrays py-text-unidecode
adios2 opencv py-textblob
adlbx opendx py-texttable
admixtools openexr py-tfdlpack
adms openfast py-theano
adol-c openfdtd py-thinc
advancecomp openfoam py-thirdorder
adwaita-icon-theme openfoam-org py-threadpoolctl
aegean openfst py-tifffile
aeskeyfind opengl py-timm
aespipe openglu py-tinyarray
agrep openimageio py-tokenizers
aida openipmi py-toml
akantu openjdk py-tomli
alan openjpeg py-tomlkit
albany openkim-models py-tomopy
albert openldap py-toolz
alembic openlibm py-toposort
alglib openloops py-torch
allpaths-lg openmc py-torch-cluster
alluxio openmm py-torch-geometric
alpaka openmolcas py-torch-nvidia-apex
alpgen openmpi py-torch-scatter
alps openmx py-torch-sparse
alquimia opennurbs py-torch-spline-conv
alsa-lib openpa py-torchaudio
aluminum openpbs py-torchfile
ambari openpmd-api py-torchgeo
amber openrasmol py-torchmeta
amdblis openresty py-torchmetrics
amdfftw openscenegraph py-torchsummary
amdlibflame openslide py-torchtext
amdlibm openslp py-torchvision
amdscalapack openspeedshop py-tornado
amg openspeedshop-utils py-tox
amg2013 openssh py-tpot
amgx openssl py-tqdm
aml openstf py-traceback2
amp opensubdiv py-traitlets
ampl opentsdb py-traits
ampliconnoise openturns py-traitsui
amr-wind openvdb py-transformers
amrex openvslam py-transforms3d
amrvis openwsman py-treehash
anaconda2 opium py-triangle
anaconda3 optional-lite py-trojanzoo-sphinx-theme
andi optipng py-tuiview
angsd opus py-tweedledum
ant oracle-instant-client py-twine
antimony oras py-twisted
antlr orbit2 py-typed-ast
ants orc py-typeguard
aocc orca py-typesentry
aocl-sparse orfm py-typing
aoflagger orientdb py-typing-extensions
aom orthofiller py-tzlocal
aomp orthofinder py-ucsf-pyem
apachetop orthomcl py-ucx-py
apcomp osi py-uhi
ape osmctools py-ujson
aperture-photometry osqp py-umalqurra
apex ossp-uuid py-umi-tools
apfel osu-micro-benchmarks py-uncertainties
apktool otf py-unicycler
apple-libunwind otf2 py-unidecode
apple-libuuid p11-kit py-unittest2
applewmproto p3dfft3 py-unittest2py3k
appres p4est py-unshare
apr p7zip py-update-checker
apr-util pacbio-daligner py-uproot
aragorn pacbio-damasker py-uproot3
arbor pacbio-dazz-db py-uproot3-methods
arborx pacbio-dextractor py-uproot4
archer pacifica-cli py-uritemplate
argobots packmol py-urllib3
argon2 pacparser py-urwid
argp-standalone pacvim py-us
args pagit py-usgs
argtable pagmo py-utils
aria2 pagmo2 py-uvloop
arm pajeng py-uvw
arm-forge pal py-uwsgi
armadillo palisade-development py-vcf-kit
arpack-ng paml py-vcrpy
arrayfire panda py-vcstool
arrow pandaseq py-vcstools
asagi pandoc py-vcversioner
ascent pango py-vector
asciidoc pangolin py-vector-quantize-pytorch
asciidoc-py3 pangomm py-vermin
asdcplib papi py-versioneer
asdf-cxx papyrus py-vine
asio paradiseo py-virtualenv
aspa parallel py-virtualenv-clone
aspcud parallel-netcdf py-virtualenvwrapper
aspect parallelio py-visdom
aspell parallelmergetree py-voluptuous
aspell6-de paraver py-vsc-base
aspell6-en paraview py-vsc-install
aspell6-es parflow py-vsts
aspera-cli parmetis py-vsts-cd-manager
assimp parmgridgen py-walinuxagent
astra parmmg py-wand
astral parquet-cpp py-wandb
astyle parquet-format py-warlock
at-spi2-atk parsec py-warpx
at-spi2-core parsimonator py-wasabi
atf parsplice py-watchdog
athena partitionfinder py-wcsaxes
atk pasta py-wcwidth
atlas patch py-weave
atmi patchelf py-webencodings
atom-dft patchutils py-webkit-server
atompaw pathfinder py-weblogo
atop pax-utils py-webob
attr pbbam py-websocket-client
audacious pbmpi py-websockets
audacity pbsuite py-werkzeug
audit-userspace pciutils py-wget
augustus pcl py-whatshap
authd pcma py-wheel
authselect pcre py-whichcraft
autoconf pcre2 py-whoosh
autoconf-archive pdc py-widgetsnbextension
autodiff pdf2svg py-wincertstore
autodock-gpu pdftk py-word2number
autodock-vina pdsh py-workload-automation
autofact pdt py-wradlib
autogen pegtl py-wrapt
automaded pennant py-wstool
automake percept py-wub
avizo percona-server py-wurlitzer
aws-parallelcluster perfstubs py-wxmplot
awscli perl py-wxpython
axel perl-acme-damn py-xarray
axl perl-algorithm-diff py-xattr
axom perl-alien-build py-xdot
babelflow perl-alien-libxml2 py-xenv
babeltrace perl-alien-svn py-xgboost
bacio perl-app-cmd py-xlrd
backupninja perl-array-utils py-xlsxwriter
bam-readcount perl-b-hooks-endofscope py-xlwt
bamaddrg perl-bio-searchio-hmmer py-xmlrunner
bamdst perl-bioperl py-xmltodict
bamtools perl-bit-vector py-xopen
bamutil perl-cairo py-xpyb
banner perl-capture-tiny py-xrootdpyfs
bannergrab perl-carp-clan py-xvfbwrapper
barrnap perl-cgi py-xxhash
bart perl-class-data-inheritable py-yacs
barvinok perl-class-inspector py-yahmm
bash perl-class-load py-yajl
bash-completion perl-class-load-xs py-yamlreader
bashtop perl-clone py-yapf
bat perl-clone-choose py-yarl
batctl perl-compress-raw-bzip2 py-yolk3k
bats perl-compress-raw-zlib py-youtube-dl
bazel perl-config-general py-yq
bbcp perl-contextual-return py-yt
bbmap perl-cpan-meta-check py-ytopt
bc perl-data-dumper py-ytopt-autotune
bcache perl-data-optlist py-zarr
bcftools perl-data-stag py-zc-buildout
bcl2fastq2 perl-date-manip py-zc-lockfile
bdftopcf perl-db-file py-zict
bdii perl-dbd-mysql py-zipfile-deflate64
bdw-gc perl-dbd-pg py-zipp
beagle perl-dbd-sqlite py-zope-event
beakerlib perl-dbi py-zope-interface
bear perl-devel-cycle py-zxcvbn
beast-tracer perl-devel-globaldestruction pygmo
beast1 perl-devel-overloadinfo pythia6
beast2 perl-devel-stacktrace pythia8
bedops perl-devel-symdump python
bedtools2 perl-digest-md5 q-e-sirius
beforelight perl-dist-checkconflicts qbank
benchmark perl-encode-locale qbox
berkeley-db perl-error qca
berkeleygw perl-eval-closure qcachegrind
bertini perl-exception-class qd
bgpdump perl-exporter-lite qemu
bib2xhtml perl-exporter-tiny qgis
bigdft-atlab perl-extutils-config qgraf
bigdft-chess perl-extutils-depends qhull
bigdft-core perl-extutils-helpers qjson
bigdft-futile perl-extutils-installpaths qmcpack
bigdft-libabinit perl-extutils-makemaker qmd-progress
bigdft-psolver perl-extutils-pkgconfig qnnpack
bigdft-spred perl-ffi-checklib qorts
bigdft-suite perl-file-chdir qperf
bigreqsproto perl-file-copy-recursive qrupdate
bind9 perl-file-homedir qscintilla
binutils perl-file-listing qt
bioawk perl-file-pushd qt-creator
biobambam2 perl-file-sharedir-install qtgraph
biobloom perl-file-slurp qthreads
biopieces perl-file-slurp-tiny qtkeychain
bird perl-file-slurper qualimap
bismark perl-file-which quantum-espresso
bison perl-font-ttf quartz
bitlbee perl-forks qucs
bitmap perl-fth quicksilver
bitsery perl-gd quinoa
blaspp perl-gdgraph quota
blasr perl-gdgraph-histogram qwt
blasr-libcpp perl-gdtextutil qwtpolar
blast-legacy perl-getopt-tabular r
blast-plus perl-graph r-a4
blast2go perl-graph-readwrite r-a4base
blat perl-hash-merge r-a4classif
blaze perl-html-parser r-a4core
blis perl-html-tagset r-a4preproc
bliss perl-http-cookies r-a4reporting
blitz perl-http-daemon r-abadata
blktrace perl-http-date r-abaenrichment
bloaty perl-http-message r-abind
blogbench perl-http-negotiate r-absseq
blt perl-inline r-acde
bmake perl-inline-c r-acepack
bmi perl-io-all r-acgh
bml perl-io-compress r-acme
bohrium perl-io-html r-ada
boinc-client perl-io-prompt r-adabag
bolt perl-io-sessiondata r-ade4
bonniepp perl-io-socket-ssl r-adegenet
bookleaf-cpp perl-io-string r-adegraphics
boost perl-io-stringy r-adephylo
boostmplcartesianproduct perl-io-tty r-adespatial
botan perl-ipc-run r-adgoftest
bowtie perl-json r-adsplit
bowtie2 perl-libwww-perl r-aer
boxlib perl-libxml-perl r-afex
bpp-core perl-list-moreutils r-affxparser
bpp-phyl perl-list-moreutils-xs r-affy
bpp-phyl-omics perl-log-log4perl r-affycomp
bpp-seq perl-logger-simple r-affycompatible
bpp-seq-omics perl-lwp-mediatypes r-affycontam
bpp-suite perl-lwp-protocol-https r-affycoretools
bracken perl-mailtools r-affydata
braker perl-math-bezier r-affyexpress
branson perl-math-cdf r-affyilm
breakdancer perl-math-cephes r-affyio
bref3 perl-math-matrixreal r-affypdnn
breseq perl-math-round r-affyplm
bridger perl-math-vecstat r-affyqcreport
brigand perl-mce r-affyrnadegradation
brltty perl-module-build r-agdex
brotli perl-module-build-tiny r-agilp
brpc perl-module-implementation r-agimicrorna
brynet perl-module-runtime r-aims
bsseeker2 perl-module-runtime-conflicts r-aldex2
bubblewrap perl-moose r-allelicimbalance
bucky perl-mozilla-ca r-alpine
buddy perl-mro-compat r-als
bufr perl-namespace-clean r-alsace
bumpversion perl-net-http r-altcdfenvs
busco perl-net-scp-expect r-amap
busybox perl-net-ssleay r-amelia
butter perl-number-format r-ampliqueso
butterflypack perl-object-insideout r-analysispageserver
bwa perl-package-deprecationmanager r-anaquin
bwtool perl-package-stash r-aneufinder
byacc perl-package-stash-xs r-aneufinderdata
byobu perl-padwalker r-animation
byte-unixbench perl-parallel-forkmanager r-annaffy
byteman perl-params-util r-annotate
bzip2 perl-params-validate r-annotationdbi
c perl-parse-recdescent r-annotationfilter
c-ares perl-path-tiny r-annotationforge
c-blosc perl-pdf-api2 r-annotationhub
c-blosc2 perl-pegex r-anytime
c-lime perl-perl-unsafe-signals r-aod
c3d perl-perl-version r-ape
ca-certificates-mozilla perl-perl4-corelibs r-argparse
cabana perl-perl6-slurp r-aroma-light
cachefilesd perl-perlio-gzip r-ash
caffe perl-perlio-utf8-strict r-askpass
cairo perl-readonly r-assertive
cairomm perl-regexp-common r-assertive-base
caliper perl-scalar-list-utils r-assertive-code
callflow perl-scalar-util-numeric r-assertive-data
callpath perl-set-intervaltree r-assertive-data-uk
camellia perl-set-intspan r-assertive-data-us
camp perl-set-scalar r-assertive-datetimes
camx perl-soap-lite r-assertive-files
canal perl-star-fusion r-assertive-matrices
candle-benchmarks perl-statistics-basic r-assertive-models
cantera perl-statistics-descriptive r-assertive-numbers
canu perl-statistics-pca r-assertive-properties
cap3 perl-sub-exporter r-assertive-reflection
capnproto perl-sub-exporter-progressive r-assertive-sets
capstone perl-sub-identify r-assertive-strings
cardioid perl-sub-install r-assertive-types
care perl-sub-name r-assertthat
casacore perl-sub-uplevel r-backports
cask perl-svg r-bamsignals
casper perl-swissknife r-base64
cassandra perl-sys-sigaction r-base64enc
catalyst perl-task-weaken r-bayesm
catch2 perl-term-readline-gnu r-bayesplot
cbc perl-termreadkey r-bbmisc
cbench perl-test-cleannamespaces r-beachmat
cbflib perl-test-deep r-beanplot
cblas perl-test-differences r-beeswarm
cbtf perl-test-exception r-bfast
cbtf-argonavis perl-test-fatal r-bfastspatial
cbtf-argonavis-gui perl-test-memory-cycle r-bglr
cbtf-krell perl-test-more r-bh
cbtf-lanl perl-test-most r-biasedurn
cc65 perl-test-needs r-bibtex
ccache perl-test-output r-bigalgebra
ccfits perl-test-requires r-bigmemory
ccls perl-test-requiresinternet r-bigmemory-sri
ccs-qcd perl-test-warn r-bindr
cctools perl-test-warnings r-bindrcpp
cdbfasta perl-text-csv r-bio3d
cdd perl-text-diff r-biobase
cddlib perl-text-format r-biocfilecache
cdecimal perl-text-simpletable r-biocgenerics
cdhit perl-text-soundex r-biocinstaller
cdo perl-text-unidecode r-biocmanager
ceed perl-thread-queue r-biocneighbors
cereal perl-threads r-biocparallel
ceres-solver perl-time-hires r-biocsingular
cfitsio perl-time-piece r-biocstyle
cgal perl-timedate r-biocversion
cgdb perl-tk r-biom-utils
cgdcbxd perl-try-tiny r-biomart
cget perl-uri r-biomartr
cgl perl-want r-biomformat
cgm perl-www-robotrules r-biostrings
cgns perl-xml-dom r-biovizbase
chaco perl-xml-dom-xpath r-bit
chai perl-xml-filter-buffertext r-bit64
changa perl-xml-libxml r-bitops
channelflow perl-xml-libxslt r-blavaan
chaparral perl-xml-namespacesupport r-blob
chapel perl-xml-parser r-blockmodeling
chaplin perl-xml-parser-lite r-bmp
charliecloud perl-xml-quote r-bookdown
charmpp perl-xml-regexp r-boot
chatterbug perl-xml-sax r-boruta
check perl-xml-sax-base r-brew
chgcentre perl-xml-sax-writer r-bridgesampling
chill perl-xml-simple r-brio
chlorop perl-xml-twig r-brms
chombo perl-xml-writer r-brobdingnag
chrony perl-xml-xpathengine r-broom
chrpath perl-yaml r-bsgenome
cinch perl-yaml-libyaml r-bsgenome-hsapiens-ucsc-hg19
circos pestpp r-bsseq
cistem petaca r-bumphunter
citcoms petsc r-c50
cityhash pexsi r-ca
cjson pfapack r-cairo
ck pfft r-callr
clamav pflask r-car
clamr pflotran r-caracas
clapack pfunit r-cardata
clara pgdspider r-caret
claw pgi r-caretensemble
cleaveland4 pgplot r-caroline
cleverleaf phantompeakqualtools r-category
clfft phast r-catools
clhep phasta r-cca
cli11 phist r-ccp
clinfo phoenix r-cdcfluview
clingo photos r-cellranger
clingo-bootstrap photos-f r-champ
cln php r-champdata
cloc phrap-crossmatch-swat r-checkmate
cloog phred r-checkpoint
cloverleaf phylip r-chemometrics
cloverleaf3d phylobayesmpi r-chipseq
clp phyluce r-chron
clustal-omega picard r-circlize
clustalw picsar r-circstats
cmake picsarlite r-class
cmaq pidx r-classint
cmark pig r-cli
cminpack pigz r-clipr
cmocka pika r-clisymbols
cmockery pilon r-clue
cmor pindel r-cluster
cni-plugins pinentry r-clustergeneration
cnmem pinfo r-clusterprofiler
cnpy pipework r-cner
cntk piranha r-coda
cntk1bitsgd pism r-codetools
cnvnator pixman r-codex
codar-cheetah pixz r-coin
code-server pkg-config r-colorspace
codec2 pkgconf r-colourpicker
codes pktools r-combinat
coevp planck-likelihood r-commonmark
cohmm plasma r-complexheatmap
coin3d platypus r-compositions
coinhsl plink r-compquadform
coinutils plink-ng r-condop
collectd plplot r-conquer
collier plumed r-construct
colm ply r-convevol
colordiff pmdk r-copula
comd pmemkv r-corhmm
comgr pmerge r-corpcor
commons-lang pmgr-collective r-corrplot
commons-lang3 pmix r-countrycode
commons-logging pmlib r-covr
compadre pnfft r-cowplot
compiz pngquant r-cpp11
compose pngwriter r-crayon
compositeproto pnmpi r-credentials
conda4aarch64 poamsa r-crosstalk
conduit pocl r-crul
conmon podio r-ctc
connect-proxy podman r-cubature
conserver poke r-cubist
console-bridge polymake r-curl
constype poplddecay r-dada2
consul poppler r-data-table
converge poppler-data r-dbi
cool popt r-dbplyr
coral porta r-debugme
corenlp portage r-decipher
coreutils portcullis r-delayedarray
corset postgis r-delayedmatrixstats
cosbench postgresql r-deldir
cosign povray r-dendextend
cosma powerapi r-deoptim
cosmoflow-benchmark powertop r-deoptimr
cosmomc ppl r-deriv
cosp2 pplacer r-desc
cotter ppopen-appl-amr-fdm r-deseq
couchdb ppopen-appl-bem r-deseq2
cowsay ppopen-appl-bem-at r-desolve
cp2k ppopen-appl-dem-util r-devtools
cpio ppopen-appl-fdm r-dexseq
cpmd ppopen-appl-fdm-at r-diagrammer
cpp-argparse ppopen-appl-fem r-dicekriging
cpp-httplib ppopen-appl-fvm r-dichromat
cpp-termcolor ppopen-at r-diffobj
cppad ppopen-math-mp r-diffusionmap
cppcheck ppopen-math-vis r-digest
cppcoro prank r-diptest
cppgsl precice r-dirichletmultinomial
cpprestsdk predixy r-dismo
cppunit premake-core r-distributional
cppzmq presentproto r-diversitree
cpu-features preseq r-dmrcate
cpuinfo presto r-dnacopy
cqrlib price r-do-db
cquery primer3 r-domc
cracklib prinseq-lite r-doparallel
cradl printproto r-dorng
cram prism r-dose
cray-fftw prmon r-dosnow
cray-libsci prng r-dotcall64
cray-mpich probconsrna r-downloader
cray-mvapich2 procenv r-dplyr
creduce process-in-process r-dqrng
cromwell procps r-dss
cromwell-womtool procps-ng r-dt
cronie prod-util r-dtplyr
crtm prodigal r-dtw
cryptopp professor r-dygraphs
cryptsetup profugusmc r-dynamictreecut
csa-c proj r-e1071
cscope prokka r-earth
csdp prometheus r-ecp
ctffind protobuf r-edger
ctpl protobuf-c r-effects
ctre proxymngr r-elemstatlearn
cub prrte r-ellipse
cube pruners-ninja r-ellipsis
cube-blade ps-lite r-emmeans
cubelib psi4 r-emmli
cubew psimd r-energy
cubist pslib r-enrichplot
cuda psm r-ensembldb
cuda-memtest psmc r-envstats
cudnn pstreams r-ergm
cufflinks pthreadpool r-estimability
cunit pugixml r-europepmc
cupla pulseaudio r-evaluate
cups pumi r-evd
curl pv r-exactextractr
cusz pvm r-exomecopy
cvector pxz r-exomedepth
cvs py-3to2 r-experimenthub
cxx py-4suite-xml r-expint
cxxopts py-abcpy r-expm
cxxtest py-abipy r-factoextra
cyrus-sasl py-absl-py r-factominer
czmq py-accimage r-fansi
dakota py-acme-tiny r-farver
daligner py-adal r-fastcluster
dalton py-adb-enhanced r-fastdigest
damageproto py-addict r-fastica
damaris py-adios r-fastmap
damask py-advancedhtmlparser r-fastmatch
damask-grid py-aenum r-fastmatrix
damask-mesh py-affine r-fda
damselfly py-agate r-fdb-infiniummethylation-hg18
darshan-runtime py-agate-dbf r-fdb-infiniummethylation-hg19
darshan-util py-agate-excel r-fds
dash py-agate-sql r-ff
datamash py-aiobotocore r-fftwtools
dataspaces py-aiodns r-fgsea
datatransferkit py-aiofiles r-fields
date py-aiohttp r-filehash
dateutils py-aiohttp-cors r-findpython
davix py-aioitertools r-fit-models
dbcsr py-aioredis r-fitdistrplus
dbow2 py-aiosignal r-flashclust
dbus py-aiosqlite r-flexclust
dbus-glib py-alabaster r-flexmix
dbxtool py-alembic r-fnn
dcap py-altgraph r-forcats
dcm2niix py-amqp r-foreach
dcmtk py-angel r-forecast
dd4hep py-aniso8601 r-foreign
ddd py-annexremote r-formatr
dealii py-ansi2html r-formula
dealii-parameter-gui py-ansible r-fpc
debbuild py-antlr4-python3-runtime r-fpcompare
debugedit py-anuga r-fracdiff
decentralized-internet py-anyio r-fs
deconseq-standalone py-anytree r-futile-logger
dejagnu py-apache-beam r-futile-options
delly2 py-apache-libcloud r-future
delphes py-apex r-future-apply
delta py-apipkg r-gamlss
denovogear py-appdirs r-gamlss-data
dftbplus py-applicationinsights r-gamlss-dist
dftd3-lib py-appnope r-gamm4
dftd4 py-apptools r-gargle
dftfe py-apscheduler r-gbm
dhpmm-f py-arcgis r-gbrd
dhtest py-archspec r-gcrma
dia py-argcomplete r-gdalutils
dialign py-argh r-gdata
dialign-tx py-argon2-cffi r-gdsfmt
diamond py-argparse r-geiger
dicom3tools py-args r-genefilter
diffmark py-arrow r-genelendatabase
diffsplice py-arviz r-genemeta
diffutils py-asciitree r-geneplotter
dihydrogen py-asdf r-generics
dimemas py-ase r-genetics
ding-libs py-asgiref r-genie3
dire py-asn1crypto r-genomeinfodb
direnv py-aspy-yaml r-genomeinfodbdata
discovar py-asserts r-genomicalignments
discovardenovo py-asteval r-genomicfeatures
disktype py-astor r-genomicranges
dislin py-astpretty r-gensa
distcc py-astroid r-geomorph
diy py-astropy r-geonames
dlib py-astropy-healpix r-geoquery
dlpack py-astropy-helpers r-geor
dmd py-astunparse r-geosphere
dmidecode py-async-generator r-gert
dmlc-core py-async-lru r-getopt
dmtcp py-async-timeout r-getoptlong
dmxproto py-asyncio r-ggally
dnsmap py-asynctest r-ggbeeswarm
dnsmasq py-atomicwrites r-ggbio
dnstop py-atpublic r-ggdendro
dnstracer py-atropos r-ggforce
docbook-xml py-ats r-ggjoy
docbook-xsl py-attrs r-ggmap
dock py-audioread r-ggplot2
dos2unix py-autograd r-ggplotify
dosfstools py-autograd-gamma r-ggpubr
dotconf py-automat r-ggraph
dotnet-core-sdk py-autopep8 r-ggrepel
double-conversion py-auxlib r-ggridges
doxygen py-avro r-ggsci
dpcpp py-avro-json-serializer r-ggsignif
dpdk py-avro-python3 r-ggthemes
draco py-awesome-slugify r-ggvis
dracut py-awkward r-gh
dramsim2 py-awkward0 r-gistr
dramsim3 py-awkward1 r-git2r
dray py-azote r-gitcreds
dri2proto py-azure-batch r-glimma
dri3proto py-azure-cli r-glmnet
drill py-azure-cli-command-modules-nspkg r-globaloptions
dropwatch py-azure-cli-core r-globals
druid py-azure-cli-nspkg r-globaltest
ds py-azure-cli-telemetry r-glue
dsdp py-azure-common r-gmodels
dsfmt py-azure-core r-gmp
dsqss py-azure-cosmos r-go-db
dsrc py-azure-datalake-store r-goftest
dssp py-azure-functions-devops-build r-gofuncr
dtc py-azure-graphrbac r-googledrive
dtcmp py-azure-identity r-googlesheets4
dtf py-azure-keyvault r-googlevis
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dust py-azure-keyvault-keys r-gosemsim
dyninst py-azure-keyvault-nspkg r-goseq
dysco py-azure-keyvault-secrets r-gostats
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eagle py-azure-mgmt-apimanagement r-gplots
earlyoom py-azure-mgmt-appconfiguration r-graph
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ebms py-azure-mgmt-authorization r-grbase
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ecdsautils py-azure-mgmt-billing r-gridgraphics
ecflow py-azure-mgmt-botservice r-gsa
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eclipse-gcj-parser py-azure-mgmt-cognitiveservices r-gseabase
ecos py-azure-mgmt-compute r-gsl
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ecp-data-vis-sdk py-azure-mgmt-containerinstance r-gss
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ed py-azure-mgmt-containerservice r-gsubfn
editline py-azure-mgmt-core r-gtable
editres py-azure-mgmt-cosmosdb r-gtools
edm4hep py-azure-mgmt-datalake-analytics r-gtrellis
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efivar py-azure-mgmt-datamigration r-gwmodel
eigen py-azure-mgmt-deploymentmanager r-haven
eigenexa py-azure-mgmt-devtestlabs r-hdf5array
elasticsearch py-azure-mgmt-dns r-hdf5r
elemental py-azure-mgmt-eventgrid r-hdrcde
elfio py-azure-mgmt-eventhub r-hexbin
elfutils py-azure-mgmt-hdinsight r-hh
elk py-azure-mgmt-imagebuilder r-highr
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elpa py-azure-mgmt-iothub r-hms
elsd py-azure-mgmt-iothubprovisioningservices r-hoardr
elsdc py-azure-mgmt-keyvault r-htmltable
elsi py-azure-mgmt-kusto r-htmltools
emacs py-azure-mgmt-loganalytics r-htmlwidgets
ember py-azure-mgmt-managedservices r-httpcode
emboss py-azure-mgmt-managementgroups r-httpuv
embree py-azure-mgmt-maps r-httr
enca py-azure-mgmt-marketplaceordering r-hwriter
enchant py-azure-mgmt-media r-hypergraph
energyplus py-azure-mgmt-monitor r-ica
entrezdirect py-azure-mgmt-msi r-ids
entt py-azure-mgmt-netapp r-igraph
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enzyme py-azure-mgmt-policyinsights r-illuminahumanmethylation450kmanifest
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eq-r py-azure-mgmt-rdbms r-illuminahumanmethylationepicmanifest
er py-azure-mgmt-recoveryservices r-illuminaio
erfa py-azure-mgmt-recoveryservicesbackup r-imager
erlang py-azure-mgmt-redhatopenshift r-impute
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erne py-azure-mgmt-relay r-ini
es-shell py-azure-mgmt-reservations r-inline
esmf py-azure-mgmt-resource r-insight
espanso py-azure-mgmt-search r-interactivedisplaybase
essl py-azure-mgmt-security r-intervals
esys-particle py-azure-mgmt-servicebus r-inum
etcd py-azure-mgmt-servicefabric r-ipred
ethminer py-azure-mgmt-signalr r-iranges
ethtool py-azure-mgmt-sql r-irdisplay
etsf-io py-azure-mgmt-sqlvirtualmachine r-irkernel
eve py-azure-mgmt-storage r-irlba
evemu py-azure-mgmt-trafficmanager r-isdparser
everytrace py-azure-mgmt-web r-islr
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evieext py-azure-nspkg r-isoband
evtgen py-azure-storage-blob r-isva
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exciting py-azureml-pipeline-core r-kegggraph
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expat py-azureml-train-restclients-hyperdrive r-kpmt
expect py-babel r-ks
express py-backcall r-labeling
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eztrace py-backports-functools-lru-cache r-laplacesdemon
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faiss py-bandit r-lazyeval
fakechroot py-basemap r-ldheatmap
fakexrandr py-bash-kernel r-leafem
falcon py-basis-set-exchange r-leaflet
fann py-batchspawner r-leaflet-providers
faodel py-bayesian-optimization r-leafpop
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fasta py-bcrypt r-leiden
fastdb py-beancount r-lfe
fastdfs py-beautifulsoup4 r-lhs
fastjar py-beniget r-libcoin
fastjet py-bids-validator r-lifecycle
fastjson py-bigdft r-limma
fastmath py-bigfloat r-limsolve
fastme py-billiard r-listenv
fastp py-binaryornot r-lme4
fastphase py-bintrees r-lmertest
fastq-screen py-binwalk r-lmtest
fastqc py-biom-format r-lobstr
fastqvalidator py-biomine r-locfit
fasttext py-biopandas r-log4r
fasttransforms py-biopython r-loo
fasttree py-bitarray r-lpsolve
fastx-toolkit py-bitstring r-lsei
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fbgemm py-bleach r-lumi
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fcgi py-blessings r-magic
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fdupes py-blosc r-makecdfenv
feh py-bmap-tools r-maldiquant
fenics py-bokeh r-manipulatewidget
fenics-basix py-boltons r-mapplots
fenics-dolfinx py-boom-boot-manager r-mapproj
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fermi py-boto r-maptools
fermikit py-boto3 r-mapview
fermisciencetools py-botocore r-markdown
ferret py-bottle r-marray
ffb py-bottleneck r-mass
ffmpeg py-breakseq2 r-mathjaxr
ffr py-breathe r-matlab
ffsb py-brian r-matr
ffte py-brian2 r-matrix
fftw py-brotlipy r-matrixgenerics
fgsl py-bsddb3 r-matrixmodels
fides py-build r-matrixstats
figlet py-bx-python r-mclust
figtree py-bz2file r-mcmc
file py-cachecontrol r-mcmcglmm
filebench py-cached-property r-mcmcpack
filo py-cachetools r-mco
filtlong py-cachy r-mda
fimpute py-cairocffi r-memoise
find-circ py-cantoolz r-memuse
findbugs py-carputils r-mergemaid
findutils py-cartopy r-metap
fio py-catalogue r-methylumi
fipscheck py-catkin-pkg r-mgcv
fish py-cclib r-mgraster
fixesproto py-cdat-lite r-mice
fj py-cdo r-microbenchmark
fjcontrib py-cdsapi r-mime
fl py-cekit r-minfi
flac py-celery r-miniui
flann py-certifi r-minqa
flap py-certipy r-misc3d
flash py-cf-units r-missmethyl
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flatbuffers py-cfgrib r-mitools
flatcc py-cfgv r-mixtools
flcl py-cftime r-mlbench
flecsale py-chai r-mlinterfaces
flecsi py-chainer r-mlr
flecsph py-chainmap r-mlrmbo
fleur py-chalice r-mmwrweek
flex py-chardet r-mnormt
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flint py-cheetah3 r-mpm
flit py-cheroot r-msnbase
fltk py-cherrypy r-multcomp
flume py-chronyk r-multicool
flux-core py-ci-info r-multitaper
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flux-sched py-cinemasci r-munsell
fluxbox py-citeproc-py r-mutoss
fms py-clean-text r-mvtnorm
fmt py-cleo r-mzid
foam-extend py-click r-mzr
folly py-click-didyoumean r-nada
font-util py-click-plugins r-nanotime
fontcacheproto py-click-repl r-ncbit
fontconfig py-cligj r-ncdf4
fontsproto py-clikit r-network
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form py-clint r-neuralnet
formetis py-clipboard r-nfactors
fortran py-cloudpickle r-nimble
fortrilinos py-clustershell r-nleqslv
foundationdb py-cmake r-nlme
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fp16 py-cmocean r-nmf
fpc py-cmsml r-nmof
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fpocket py-coilmq r-nortest
fqtrim py-colorama r-np
fr-hit py-colorclass r-npsurv
fraggenescan py-colored r-numderiv
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freefem py-coloredlogs r-openssl
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freeimage py-colorlog r-optimx
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freetype py-colorpy r-ordinal
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fribidi py-commonmark r-organismdbi
frontier-client py-configargparse r-packrat
frontistr py-configobj r-pacman
fseq py-configparser r-paleotree
fsl py-configspace r-pamr
fslsfonts py-connectionpool r-pan
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ftgl py-contextlib2 r-paramhelpers
ftk py-contextvars r-party
ftobjectlibrary py-convertdate r-partykit
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fujitsu-ssl2 py-cookies r-pbapply
fullock py-copulas r-pbdzmq
funhpc py-correctionlib r-pbivnorm
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fyba py-coverage r-pcapp
fzf py-coveralls r-pegas
g2 py-cppheaderparser r-permute
g2c py-cppy r-pfam-db
g2o py-crashtest r-phangorn
g2tmpl py-crcmod r-phantompeakqualtools
g4abla py-crispresso r-pheatmap
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g4neutronxs py-csvkit r-phytools
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g4photonevaporation py-cudf r-pillar
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g4radioactivedecay py-cupy r-pixmap
g4realsurface py-current r-pkgbuild
g4saiddata py-cutadapt r-pkgconfig
g4tendl py-cvxopt r-pkgload
gamess-ri-mp2-miniapp py-cvxpy r-pkgmaker
gams py-cx-oracle r-plogr
ganglia py-cycler r-plot3d
gapbs py-cymem r-plotly
gapcloser py-cyordereddict r-plotmo
gapfiller py-cython r-plotrix
garfieldpp py-cython-bbox r-pls
gasnet py-cyvcf2 r-plyr
gatb-core py-d2to1 r-pmcmr
gate py-dadi r-png
gatepet2stir py-damask r-polspline
gatetools py-dask r-polyclip
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gaudi py-dask-ml r-pool
gaussian py-dask-sphinx-theme r-popgenome
gaussian-src py-dataclasses r-popvar
gaussian-view py-datacube r-posterior
gawk py-datalad r-powerlaw
gblocks py-datalad-container r-prabclus
gcc py-datalad-hirni r-pracma
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gccxml py-datalad-neuroimaging r-preprocesscore
gchp py-datalad-webapp r-prettydoc
gconf py-datasets r-prettyunits
gcta py-dateparser r-proc
gdal py-datrie r-processx
gdb py-dbf r-prodlim
gdbm py-dbfread r-progress
gdk-pixbuf py-deap r-proj
gdl py-debtcollector r-proj4
gdrcopy py-debugpy r-projpred
geant4 py-decorator r-promises
geant4-data py-deepdiff r-protgenerics
geant4-vmc py-deeptools r-proto
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gemmlowp py-defusedxml r-pryr
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genesis py-deprecated r-pscbs
genfit py-deprecation r-pspline
gengeo py-descartes r-psych
gengetopt py-devlib r-ptw
genie py-dgl r-purrr
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genometools py-dictdiffer r-qs
genomeworks py-dill r-qtl
genrich py-dipy r-quadprog
geode py-discover r-quantmod
geoip py-diskcache r-quantreg
geoip-api-c py-distlib r-quantro
geopm py-distributed r-questionr
geos py-distro r-quickplot
gettext py-django r-qvalue
gflags py-dlcpar r-r-cache
gfsio py-dm-tree r-r-methodss3
gh py-dnaio r-r-oo
ghost py-docker r-r-utils
ghostscript py-dockerpy-creds r-r6
ghostscript-fonts py-docopt r-rainbow
giblib py-docutils r-randomfields
giflib py-docutils-stubs r-randomfieldsutils
ginac py-dominate r-randomforest
ginkgo py-dotnetcore2 r-randomglm
giraph py-downhill r-ranger
git py-doxypy r-rann
git-annex py-doxypypy r-rapiserialize
git-fat-git py-dp-gp-cluster r-rappdirs
git-imerge py-dpath r-raster
git-lfs py-drmaa r-rbgl
gitconddb py-dryscrape r-rbibutils
gl2ps py-duecredit r-rbokeh
glew py-dulwich r-rcmdcheck
glfmultiples py-dvc r-rcolorbrewer
glfw py-dxchange r-rcpp
glib py-dxfile r-rcppannoy
glib-networking py-earthengine-api r-rcpparmadillo
glibmm py-easybuild-easyblocks r-rcppblaze
glimmer py-easybuild-easyconfigs r-rcppcctz
glm py-easybuild-framework r-rcppcnpy
global py-eccodes r-rcppdate
globalarrays py-ecdsa r-rcppeigen
glog py-ecos r-rcpphnsw
gloo py-edffile r-rcppparallel
glpk py-editdistance r-rcppprogress
glproto py-efficientnet-pytorch r-rcurl
glusterfs py-eg r-rda
glvis py-einops r-rdpack
gmake py-elasticsearch r-readbitmap
gmap-gsnap py-elephant r-readr
gmime py-emcee r-readxl
gmodel py-emoji r-reams
gmp py-empy r-recipes
gmsh py-entrypoints r-registry
gmt py-enum34 r-rematch
gmtsar py-envisage r-rematch2
gnat py-ephem r-remotes
gnds py-epydoc r-renv
gnome-common py-espresso r-reordercluster
gnuconfig py-espressopp r-reportingtools
gnupg py-et-xmlfile r-repr
gnuplot py-etelemetry r-reprex
gnuradio py-eventlet r-reproducible
gnutls py-execnet r-require
go py-exifread r-reshape
go-bootstrap py-exodus-bundler r-reshape2
go-md2man py-extension-helpers r-reticulate
gobject-introspection py-extras r-rex
goblin-hmc-sim py-ez-setup r-rferns
google-crc32c py-f90wrap r-rgdal
googletest py-fabric r-rgenoud
gosam-contrib py-faker r-rgeos
goshimmer py-falcon r-rgexf
gotcha py-fallocate r-rgl
gource py-fastai r-rgooglemaps
gpdb py-fastaindex r-rgraphviz
gperf py-fastavro r-rhdf5
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gpi-2 py-fastcore r-rhmmer
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gprolog py-fastdownload r-rinside
gptl py-fastdtw r-rio
gptune py-fasteners r-rjags
gpu-burn py-fastjsonschema r-rjava
gqrx py-fastprogress r-rjson
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grabix py-faststructure r-rlang
grace py-fava r-rle
grackle py-fenics-basix r-rmariadb
gradle py-fenics-dijitso r-rmarkdown
grads py-fenics-dolfinx r-rminer
grafana py-fenics-ffc r-rmpfr
grandr py-fenics-ffcx r-rmpi
graph500 py-fenics-fiat r-rms
graphblast py-fenics-instant r-rmutil
graphicsmagick py-fenics-ufl r-rmysql
graphite2 py-filelock r-rnaseqmap
graphlib py-filemagic r-rncl
graphmap py-filterpy r-rnexml
graphviz py-findlibs r-rngtools
grass py-fiona r-rnoaa
graylog2-server py-fire r-robust
grep py-fiscalyear r-robustbase
grib-api py-fisher r-roc
grib-util py-fits-tools r-rocr
gridlab-d py-fixtures r-rodbc
grnboost py-flake8 r-rook
groff py-flake8-import-order r-rots
gromacs py-flake8-polyfill r-roxygen2
gromacs-chain-coordinate py-flameprof r-rpart
gromacs-swaxs py-flask r-rpart-plot
grpc py-flask-babel r-rpmm
gsettings-desktop-schemas py-flask-compress r-rpostgres
gsl py-flask-cors r-rpostgresql
gslib py-flask-restful r-rprojroot
gtk-doc py-flask-socketio r-rpsychi
gtkmm py-flatbuffers r-rrblup
gtkorvo-atl py-flatten-dict r-rrcov
gtkorvo-cercs-env py-flawfinder r-rrpp
gtkorvo-dill py-flexmock r-rsamtools
gtkorvo-enet py-flexx r-rsconnect
gtkplus py-flit r-rsnns
gtksourceview py-flit-core r-rsolnp
gts py-flufl-lock r-rspectra
guacamole-client py-flye r-rsqlite
guacamole-server py-fn-py r-rstan
guidance py-fonttools r-rstantools
guile py-formulaic r-rstatix
gunrock py-fortran-language-server r-rstudioapi
gurobi py-fortranformat r-rsvd
gxsview py-fparser r-rtracklayer
gzip py-fprettify r-rtsne
h2database py-freezegun r-runit
h5bench py-frozenlist r-runjags
h5cpp py-fs r-ruv
h5hut py-fsspec r-rvcheck
h5part py-ftfy r-rversions
h5utils py-funcsigs r-rvest
h5z-zfp py-functools32 r-rviennacl
hacckernels py-funcy r-rzmq
hackrf-host py-fury r-s2
hadoop py-fusepy r-s4vectors
hal py-future r-samr
halc py-futures r-sandwich
half py-fuzzywuzzy r-satellite
hama py-fypp r-scales
hapcut2 py-gast r-scater
hapdip py-gcovr r-scattermore
haploview py-gcs-oauth2-boto-plugin r-scatterpie
haproxy py-gdbgui r-scatterplot3d
hardlink py-gdc-client r-scrime
harfbuzz py-gee-asset-manager r-sctransform
harminv py-geeadd r-scuttle
hashcat py-geeup r-sdmtools
haveged py-gemini r-segmented
hazelcast py-genders r-selectr
hbase py-geneimpacts r-seqinr
hbm-dramsim2 py-genshi r-seqlogo
hc py-gensim r-servr
hcol py-geoalchemy2 r-sessioninfo
hcoll py-geocube r-seurat
hdf py-geographiclib r-sf
hdf-eos2 py-geopandas r-sfsmisc
hdf-eos5 py-geoplot r-shadowtext
hdf5 py-geopy r-shape
hdf5-blosc py-getorganelle r-shiny
hdf5-vfd-gds py-gevent r-shinydashboard
hdf5-vol-async py-gf256 r-shinyfiles
hdf5-vol-external-passthrough py-gffutils r-shinyjs
hdf5-vol-log py-gin-config r-shinystan
hdfview py-git-review r-shinythemes
healpix-cxx py-gitdb r-shortread
heaptrack py-gitpython r-siggenes
heffte py-glmnet r-simpleaffy
helib py-glob2 r-singlecellexperiment
helics py-globus-sdk r-sitmo
help2man py-gluoncv r-sm
henson py-gnuplot r-smoof
hepmc py-goatools r-sn
hepmc3 py-gooey r-snakecase
hepmcanalysis py-google r-snow
heppdt py-google-api-core r-snowfall
heputils py-google-api-python-client r-snprelate
hercules py-google-apitools r-snpstats
herwig3 py-google-auth r-som
herwigpp py-google-auth-httplib2 r-somaticsignatures
hevea py-google-auth-oauthlib r-sourcetools
hibench py-google-cloud-core r-sp
hic-pro py-google-cloud-storage r-spacetime
hicolor-icon-theme py-google-crc32c r-spades
highfive py-google-pasta r-spades-addins
highwayhash py-google-resumable-media r-spades-core
hiop py-googleapis-common-protos r-spades-tools
hip py-googledrivedownloader r-spam
hip-rocclr py-gosam r-sparsem
hipace py-gpaw r-sparsematrixstats
hipblas py-gpustat r-spatial
hipcub py-gputil r-spatialeco
hipfft py-gpy r-spatialpack
hipfort py-gpyopt r-spatialreg
hipify-clang py-gpytorch r-spatstat
hipsolver py-gql r-spatstat-data
hipsparse py-grandalf r-spatstat-utils
hipsycl py-graphql-core r-spdata
hiredis py-graphviz r-spdep
hisat2 py-greenlet r-speedglm
hisea py-grequests r-spem
hive py-griddataformats r-splancs
hivex py-grpcio r-splitstackshape
hmmer py-grpcio-tools r-sqldf
hohqmesh py-gsd r-squarem
homer py-gsi r-squash
hoomd-blue py-gsutil r-sseq
hoppet py-guidata r-stabledist
hotspot py-guiqwt r-stanheaders
hpcc py-gym r-stargazer
hpccg py-h11 r-statmod
hpcg py-h2 r-statnet-common
hpctoolkit py-h5glance r-stringfish
hpcviewer py-h5netcdf r-stringi
hpcx-mpi py-h5py r-stringr
hpddm py-h5sh r-strucchange
hpgmg py-hacking r-styler
hping py-haphpipe r-subplex
hpl py-hatchet r-summarizedexperiment
hpx py-hdbscan r-suppdists
hpx5 py-hdfs r-survey
hsa-rocr-dev py-healpy r-survival
hsakmt py-heapdict r-sva
hsakmt-roct py-hep-ml r-svglite
hsf-cmaketools py-hepdata-lib r-sys
hssp py-hepdata-validator r-systemfonts
hstr py-hepunits r-tarifx
htop py-hieroglyph r-taxizedb
htslib py-hiredis r-tclust
http-get py-hist r-teachingdemos
http-load py-histbook r-tensor
http-parser py-histogrammar r-tensora
http-ping py-histoprint r-tester
http-post py-holland-backup r-testit
httpd py-horovod r-testthat
httperf py-hpack r-tfbstools
httpie py-hpbandster r-tfisher
httping py-hpcbench r-tfmpvalue
httpress py-hpccm r-th-data
hub py-hstspreload r-threejs
hudi py-html2text r-tibble
hugo py-html5lib r-tictoc
hunspell py-htmlgen r-tidycensus
hw-probe py-htseq r-tidygraph
hwdata py-httpbin r-tidyr
hwloc py-httpcore r-tidyselect
hybpiper py-httplib2 r-tidyverse
hybrid-lambda py-httpretty r-tiff
hybridsim py-httptools r-tigris
hydra py-httpx r-timedate
hydrogen py-huggingface-hub r-tinytex
hyperfine py-humanfriendly r-tmixclust
hyperscan py-humanize r-tmvnsim
hyphen py-hvac r-topgo
hyphy py-hyperframe r-triebeard
hypre py-hyperlink r-trimcluster
hypre-cmake py-hyperopt r-truncdist
i3 py-hypothesis r-truncnorm
ibm-databroker py-ibm-cloud-sdk-core r-trust
ibm-java py-ibm-watson r-tseries
ibmisc py-ics r-tsne
icarus py-identify r-ttr
iceauth py-idna r-tweenr
icedtea py-idna-ssl r-txdb-hsapiens-ucsc-hg18-knowngene
icet py-illumina-utils r-txdb-hsapiens-ucsc-hg19-knowngene
ico py-ilmbase r-tximport
icu4c py-imageio r-tximportdata
id3lib py-imageio-ffmpeg r-tzdb
idba py-imagesize r-ucminf
idl py-imgaug r-udunits2
iegenlib py-iminuit r-units
ignite py-immutables r-upsetr
igprof py-importlib r-urca
igraph py-importlib-metadata r-urltools
igv py-importlib-resources r-usethis
igvtools py-incremental r-utf8
ike-scan py-inference-schema r-uuid
ilmbase py-inheritance r-uwot
ima-evm-utils py-iniconfig r-v8
imagemagick py-iniparse r-variantannotation
imake py-installer r-varselrf
imgui py-intel-openmp r-vcd
imlib2 py-intensity-normalization r-vcfr
imp py-interface-meta r-vctrs
impute2 py-intervaltree r-vegan
infernal py-invoke r-vfs
influxdb py-iocapture r-vgam
iniparser py-ipaddress r-vioplot
inputproto py-ipdb r-vipor
intel py-ipycanvas r-viridis
intel-daal py-ipyevents r-viridislite
intel-gpu-tools py-ipykernel r-visnetwork
intel-ipp py-ipyparallel r-vroom
intel-llvm py-ipython r-vsn
intel-mkl py-ipython-cluster-helper r-waldo
intel-mpi py-ipython-genutils r-watermelon
intel-mpi-benchmarks py-ipyvtk-simple r-webshot
intel-oneapi-advisor py-ipywidgets r-wgcna
intel-oneapi-ccl py-irpf90 r-whisker
intel-oneapi-compilers py-iso8601 r-withr
intel-oneapi-dal py-isodate r-wk
intel-oneapi-dnn py-isort r-xde
intel-oneapi-dpl py-itk r-xfun
intel-oneapi-inspector py-itsdangerous r-xgboost
intel-oneapi-ipp py-jaraco-functools r-xlconnect
intel-oneapi-ippcp py-javaproperties r-xlconnectjars
intel-oneapi-mkl py-jdatetime r-xlsx
intel-oneapi-mpi py-jdcal r-xlsxjars
intel-oneapi-tbb py-jedi r-xmapbridge
intel-oneapi-vpl py-jeepney r-xml
intel-oneapi-vtune py-jellyfish r-xml2
intel-parallel-studio py-jinja2 r-xnomial
intel-pin py-jinja2-time r-xopen
intel-tbb py-jmespath r-xtable
intel-xed py-joblib r-xts
interproscan py-jplephem r-xvector
intltool py-jprops r-yaimpute
ioapi py-jpype1 r-yaml
ior py-jsmin r-yapsa
iozone py-json-get r-yaqcaffy
ip py-json5 r-yarn
ip2 py-jsondiff r-zcompositions
ipcalc py-jsonpatch r-zeallot
iperf2 py-jsonpath-ng r-zip
iperf3 py-jsonpickle r-zlibbioc
ipopt py-jsonpointer r-zoo
iproute2 py-jsonref r3d
iptraf-ng py-jsonschema rabbitmq
iq-tree py-junit-xml racket
irep py-jupyter racon
isaac py-jupyter-client raft
isaac-server py-jupyter-console ragel
isc-dhcp py-jupyter-core raja
isescan py-jupyter-packaging ramulator
isl py-jupyter-packaging11 randfold
iso-codes py-jupyter-packaging7 random123
ispc py-jupyter-server randrproto
istio py-jupyter-server-mathjax range-v3
itensor py-jupyter-telemetry rankstr
itk py-jupyterhub rapidjson
itstool py-jupyterlab raptor2
itsx py-jupyterlab-pygments rasdaemon
iwyu py-jupyterlab-server rasqal
jackcess py-jupyterlab-widgets ravel
jafka py-jupytext raxml
jags py-kaggle raxml-ng
jali py-keras ray
jansi py-keras-applications rccl
jansi-native py-keras-preprocessing rclone
jansson py-keras2onnx rdc
jasper py-kerberos rdkit
jbigkit py-keyboard rdma-core
jblob py-keyring rdp-classifier
jchronoss py-keyrings-alt rdptools
jdk py-keystoneauth1 re2
jellyfish py-kitchen re2c
jemalloc py-kiwisolver readfq
jetty-project py-kmodes readline
jhpcn-df py-knack recola
jimtcl py-kombu recola-sm
jline3 py-kornia recon
jmol py-kosh recorder
jose py-kubernetes recordproto
jpegoptim py-labours redis
jq py-lap reditools
json-c py-lark-parser redland
json-cwx py-laspy redland-bindings
json-fortran py-latexcodec redset
json-glib py-law redundans
jsoncpp py-lazy reframe
jstorm py-lazy-object-proxy regcm
jube py-lazy-property relax
judy py-lazyarray relion
julea py-leather remhos
julia py-lerc rempi
junit4 py-lhsmdu rename
k8 py-liac-arff rendercheck
kadath py-libconf renderproto
kafka py-libensemble repeatmasker
kahip py-librosa repeatmodeler
kaiju py-lifelines repeatscout
kaks-calculator py-lightgbm reprimand
kaldi py-ligo-segments resourceproto
kallisto py-line-profiler restic
karma py-linecache2 revbayes
kassiopeia py-lineenhancer revocap-coupler
kbd py-lit revocap-refiner
kbproto py-lizard rgb
kcov py-llnl-sina rhash
kdiff3 py-llvmlite rinetd
kea py-lmdb ripgrep
kealib py-lmfit rivet
keepalived py-lmodule rlwrap
keepassxc py-localcider rmats
kentutils py-locket rmgdft
keyutils py-lockfile rmlab
kibana py-logilab-common rna-seqc
kicad py-louie rnaquast
kim-api py-lru-dict rnaz
kinesis py-lscsoft-glue rng-tools
kineto py-luigi rngstreams
kitty py-lws rnpletal
kmergenie py-lxml rocalution
kmod py-lz4 rocblas
knem py-lzstring rocfft
kokkos py-m2r rocketmq
kokkos-kernels py-macholib rocksdb
kokkos-kernels-legacy py-machotools rockstar
kokkos-legacy py-macs2 rocm-bandwidth-test
kokkos-nvcc-wrapper py-maestrowf rocm-clang-ocl
kraken py-magic rocm-cmake
kraken2 py-mailchecker rocm-dbgapi
krb5 py-make rocm-debug-agent
krims py-mako rocm-device-libs
kripke py-mapclassify rocm-gdb
kubernetes py-markdown rocm-opencl
kvasir-mpl py-markdown-it-py rocm-openmp-extras
kvtree py-markdown2 rocm-smi
kylin py-markovify rocm-smi-lib
ladot py-markupsafe rocm-tensile
laghos py-matplotlib rocm-validation-suite
lame py-matplotlib-inline rocminfo
lammps py-mayavi rocprim
landsfcutil py-mccabe rocprofiler-dev
lanl-cmake-modules py-mdanalysis rocrand
lapackpp py-mdit-py-plugins rocsolver
last py-mechanize rocsparse
lastz py-meldmd rocthrust
laszip py-memory-profiler roctracer-dev
latex2html py-memprof roctracer-dev-api
latte py-mercantile rodinia
launchmon py-merlin roms
lazyten py-meshio root
lbann py-metasv rose
lbxproxy py-methylcode ross
lbzip2 py-metpy routino
lcals py-mffpy rpcsvc-proto
lcio py-mg-rast-tools rpm
lcms py-mido rr
lcov py-mikado rrdtool
ldak py-minio rsbench
ldc py-minrpc rsem
ldc-bootstrap py-misopy rstart
legion py-mistune rstudio
lemon py-mixedhtseq rsync
leptonica py-mlperf-logging rsyslog
lerc py-mlxtend rt-tests
less py-mmcv rtags
lesstif py-mmtf-python rtax
leveldb py-mne ruby
lftp py-mo-pack ruby-asciidoctor
lhapdf py-mock ruby-erubis
lhapdf5 py-modred ruby-gnuplot
lhapdfsets py-moltemplate ruby-hpricot
libabigail py-monotonic ruby-mustache
libaec py-monty ruby-narray
libaio py-more-itertools ruby-rake
libao py-motmetrics ruby-rdiscount
libapplewm py-mouseinfo ruby-ronn
libapreq2 py-moviepy ruby-rubyinline
libarchive py-mpi4py ruby-svn2git
libasr py-mpld3 ruby-terminal-table
libassuan py-mplhep ruby-thor
libatasmart py-mplhep-data ruby-tmuxinator
libatomic-ops py-mpmath ruby-unicode-display-width
libbacktrace py-mrcfile ruby-xdg
libbeagle py-msal ruby-zentest
libbeato py-msal-extensions runc
libbinio py-msgpack rust
libblastrampoline py-msgpack-numpy rust-bindgen
libbsd py-msrest sabre
libbson py-msrestazure saga-gis
libbytesize py-multi-key-dict sailfish
libc py-multidict salmon
libcanberra py-multipledispatch salmon-tddft
libcap py-multiprocess salome-configuration
libcap-ng py-multiqc salome-med
libcatalyst py-munch salome-medcoupling
libceed py-murmurhash sambamba
libcerf py-mutagen samblaster
libcgroup py-mx samrai
libcint py-mxfold2 samtools
libcircle py-myhdl sandbox
libconfig py-mypy sarus
libconfuse py-mypy-extensions satsuma2
libcroco py-mysql-connector-python savanna
libctl py-mysqlclient saws
libcudf py-mysqldb1 sblim-sfcc
libcuml py-nanotime sbml
libcumlprims py-natsort sbp
libcxxwrap-julia py-nbclassic sbt
libcyaml py-nbclient scala
libdaemon py-nbconvert scalasca
libdap4 py-nbdime scale
libdatrie py-nbformat scallop
libdc1394 py-nbmake scalpel
libdeflate py-nbsphinx scan-for-matches
libdivsufsort py-nc-time-axis scantailor
libdmx py-ndg-httpsclient scipoptsuite
libdrm py-neo scons
libdwarf py-neobolt scorec-core
libeatmydata py-neotime scorep
libecpint py-nest-asyncio scorpio
libedit py-nestle scotch
libelf py-netaddr scr
libemos py-netcdf4 screen
libepoxy py-netifaces scripts
libestr py-netket scrnsaverproto
libev py-networkit scrot
libevdev py-networkx scs
libevent py-neurokit2 sctk
libevpath py-neurolab sdl2
libexif py-neurora sdl2-image
libfabric py-nibabel sdsl-lite
libfastcommon py-nibetaseries seacas
libfastjson py-nilearn seal
libffi py-ninja sed
libffs py-nipype sensei
libfive py-nistats sentencepiece
libflame py-nitransforms sentieon-genomics
libfontenc py-niworkflows seqan
libfs py-nltk seqkit
libfuse py-nodeenv seqprep
libfyaml py-nose seqtk
libgain py-nose-cov serf
libgcrypt py-nose2 sessreg
libgd py-nosexcover setserial
libgeotiff py-notebook setxkbmap
libgff py-ntlm-auth sfcgal
libgit2 py-ntplib sfcio
libgpg-error py-num2words sga
libgpuarray py-numba sgpp
libgridxc py-numcodecs shadow
libgssglue py-numexpr shapeit
libgtextutils py-numexpr3 shapeit4
libharu py-numpy shapelib
libhbaapi py-numpydoc shared-mime-info
libhio py-nvidia-ml-py shark
libhugetlbfs py-nvidia-ml-py3 shc
libiberty py-oauth2client shengbte
libibumad py-oauthlib sherpa
libical py-olefile shiny-server
libice py-omegaconf shiro
libiconv py-onnx shocklibs
libid3tag py-onnx-runtime shoremap
libidl py-onnxconverter-common shortbred
libidn2 py-onnxmltools shortstack
libimagequant py-ont-fast5-api showfont
libimobiledevice py-opcodes shtools
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libisal py-openidc-client siesta
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libjpeg-turbo py-openpmd-viewer signify
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libkcapi py-opentuner simgrid
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libksba py-opt-einsum simplemoc
liblas py-or-tools simsipm
liblbfgs py-ordered-set simul
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libmad py-osqp sirius
libmatheval py-overpy skilion-onedrive
libmaus2 py-owslib skopeo
libmaxminddb py-pacifica-downloader sl
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libmcrypt py-pacifica-uploader slate
libmd py-packaging sleef
libmesh py-pager slepc
libmetalink py-palettable slf4j
libmicrodns py-pamela slider
libmicrohttpd py-pandas slirp4netns
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libmodbus py-parmed smartdenovo
libmonitor py-parse smartmontools
libmpdclient py-parsedatetime smof
libnbc py-parsimonious smproxy
libndp py-parsl snakemake
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libnetfilter-cthelper py-particle snap-korf
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libnetfilter-queue py-path-py snbone
libnetworkit py-pathlib sniffles
libnfnetlink py-pathlib2 snpeff
libnfs py-pathos snphylo
libnfsidmap py-pathspec snptest
libnftnl py-pathtools soapdenovo-trans
libnids py-patool soapdenovo2
libnl py-patsy soci
libnotify py-pauvre sofa-c
libnova py-pbr sollve
libnrm py-peachpy sollya
libnsl py-pem solr
libogg py-pep517 somatic-sniper
liboldx py-pep8 sombrero
libopts py-pep8-naming sonlib
libp11 py-performance sortmerna
libpam py-periodictable sos
libpaper py-petastorm sosflow
libpcap py-petsc4py source-highlight
libpciaccess py-pexpect sowing
libpeas py-phonenumbers sox
libpfm4 py-phonopy sp
libpipeline py-pickle5 spack
libplist py-pickleshare spades
libpmemobj-cpp py-picmistandard span-lite
libpng py-picrust spark
libproxy py-picrust2 sparse
libpsl py-pid sparsehash
libpsml py-pika sparskit
libpthread-stubs py-pil sparta
libpulsar py-pillow spath
libqglviewer py-pillow-simd spdlog
libqrencode py-pint specfem3d-globe
libquo py-pip spectre
librdkafka py-pipits spectrum-mpi
librelp py-pispino speex
libristra py-pkgconfig speexdsp
librmm py-pkginfo spfft
librom py-plac spglib
librsb py-planar sph2pipe
librsvg py-planet spherepack
librtlsdr py-platformdirs spindle
librttopo py-plotly spiral
libsakura py-pluggy spla
libsamplerate py-ply spm
libseccomp py-pmw spot
libsecret py-pmw-patched sprng
libsharp py-pockets sqlcipher
libshm py-poetry sqlite
libsigcpp py-poetry-core sqlite-jdbc
libsignal-protocol-c py-pomegranate sqlitebrowser
libsigsegv py-pooch sqoop
libslirp py-portalocker squashfs
libsm py-portend squashfuse
libsndfile py-poster squid
libsodium py-pot sratoolkit
libspatialindex py-pox srilm
libspatialite py-poyo sse2neon
libspiro py-ppft sshfs
libsplash py-pre-commit sshpass
libssh py-preshed ssht
libssh2 py-pretrainedmodels ssmtp
libsvm py-prettytable sspace-longread
libszip py-profilehooks sspace-standard
libtar py-proglog sst-core
libtasn1 py-progress sst-dumpi
libtermkey py-progressbar2 sst-elements
libthai py-projectq sst-macro
libtheora py-prometheus-client sst-transports
libtiff py-promise stacks
libtirpc py-prompt-toolkit staden-io-lib
libtlx py-protobuf star
libtomlc99 py-prov star-ccm-plus
libtommath py-prwlock startup-notification
libtool py-psutil stat
libtorrent py-psyclone stata
libtree py-psycopg2 static-analysis-suite
libuecc py-ptyprocess stc
libunistring py-pudb steps
libunwind py-pulp stinger
libusb py-pure-eval storm
libusbmuxd py-pure-sasl stow
libuser py-py strace
libuuid py-py-cpuinfo stream
libuv py-py-spy strelka
libvdwxc py-py2bit stress
libverto py-py2cairo stress-ng
libvips py-py2neo string-view-lite
libvorbis py-py4j stringtie
libvori py-py6s stripack
libvpx py-pyaestro structure
libvterm py-pyamg strumpack
libwebp py-pyaml su2
libwebsockets py-pyani sublime-text
libwhich py-pyarrow subread
libwindowswm py-pyasn1 subversion
libx11 py-pyasn1-modules suite-sparse
libxau py-pyautogui sumaclust
libxaw py-pybedtools sumo
libxaw3d py-pybids sundials
libxc py-pybigwig superchic
libxcb py-pybind11 superlu
libxcomposite py-pybind11-stubgen superlu-dist
libxcrypt py-pybobyqa superlu-mt
libxcursor py-pybrain supernova
libxdamage py-pybtex survey
libxdmcp py-pybtex-docutils sw4lite
libxevie py-pycairo swap-assembler
libxext py-pycares swarm
libxfixes py-pycbc swfft
libxfont py-pychecker swftools
libxfont2 py-pycifrw swiftsim
libxfontcache py-pycmd swig
libxft py-pycocotools swipl
libxi py-pycodestyle symengine
libxinerama py-pycortex symlinks
libxkbcommon py-pycosat sympol
libxkbfile py-pycparser sysbench
libxkbui py-pycrypto syscalc
libxml2 py-pycuda sysfsutils
libxmu py-pycurl sysget
libxp py-pydantic sysstat
libxpm py-pydap systemc
libxpresent py-pydatalog systemtap
libxprintapputil py-pydeprecate sz
libxprintutil py-pydeps tabix
libxrandr py-pydicom tajo
libxrender py-pydispatcher talass
libxres py-pydmd talloc
libxscrnsaver py-pydocstyle tangram
libxshmfence py-pydoe tantan
libxslt py-pydoe2 tar
libxsmm py-pydot targetp
libxstream py-pydot2 task
libxt py-pydotplus taskd
libxtrap py-pydv taskflow
libxtst py-pyeda tasmanian
libxv py-pyelftools tassel
libxvmc py-pyem tau
libxxf86dga py-pyepsg tauola
libxxf86misc py-pyface tbl2asn
libxxf86vm py-pyfaidx tcl
libyaml py-pyfasta tcl-itcl
libyogrt py-pyfftw tcl-tcllib
libzip py-pyfiglet tcl-tclxml
libzmq py-pyfits tclap
liggghts py-pyflakes tcoffee
lighttpd py-pygdal tcpdump
ligra py-pygdbmi tcptrace
likwid py-pygelf tcsh
linkphase3 py-pygeos tdengine
linktest py-pygetwindow tealeaf
linsys-v py-pygit2 teckit
linux-headers py-pygithub tecplot
linux-pam py-pyglet telegraf
lis py-pygments tempestremap
listres py-pygments-pytest templight
lizard py-pygobject templight-tools
lksctp-tools py-pygps tengine
llvm py-pygpu tensorflow-serving-client
llvm-amdgpu py-pygraphviz tensorpipe
llvm-doe py-pygresql termcap
llvm-openmp py-pygtk tesseract
llvm-openmp-ompt py-pygtrie testdfsio
lm-sensors py-pyh5md tetgen
lmbench py-pyheadtail tethex
lmdb py-pyinstrument texinfo
lmod py-pyinstrument-cext texlive
lndir py-pyjnius texstudio
log4c py-pyjwt textparser
log4cplus py-pyke tfel
log4cpp py-pykml the-platinum-searcher
log4cxx py-pykokkos-base the-silver-searcher
logrotate py-pykwalify thepeg
logstash py-pylev thornado-mini
loki py-pyliblzma thrift
looptools py-pylikwid thrust
lordec py-pylint tidy-html5
lorene py-pylops tig
lp-solve py-pymatgen time
lrslib py-pymc3 timedatex
lrzip py-pymeeus timemory
lsf py-pyminifier tini
lshw py-pymol tinker
lsof py-pymongo tinygltf
lsscsi py-pymorph tinyobjloader
ltp py-pympler tinyxml
ltr-retriever py-pymsgbox tinyxml2
ltrace py-pymumps tioga
lua py-pymysql tippecanoe
lua-bitlib py-pynacl tiptop
lua-lpeg py-pynio tix
lua-luafilesystem py-pynisher tixi
lua-luajit py-pynn tk
lua-luaposix py-pynvml tkrzw
lua-mpack py-pyodbc tldd
lua-sol2 py-pyomo tmalign
lucene py-pyopencl tmhmm
luit py-pyopenssl tmux
lulesh py-pypar tomcat
lumpy-sv py-pyparsing toml11
lustre py-pypeflow tophat
lvarray py-pypeg2 torque
lvm2 py-pyperclip totalview
lwgrp py-pyperf tpm2-tss
lwm2 py-pyprecice tppred
lxc py-pyprof2html tracer
lynx py-pyproj tramonto
lz4 py-pypulse transabyss
lzma py-pyqi transdecoder
lzo py-pyqt-builder transposome
lzop py-pyqt4 transrate
m4 py-pyqt5 transset
macfuse py-pyqt5-sip trapproto
macsio py-pyquaternion tree
mad-numdiff py-pyrad tree-sitter
madgraph5amc py-pyrect treelite
mafft py-pyrfr treesub
magics py-pyro4 trf
magma py-pyrosar triangle
mahout py-pyrsistent trident
makedepend py-pysam trilinos
maker py-pyscaf trilinos-catalyst-ioss-adapter
mallocmc py-pyscf trimal
maloc py-pyscipopt trimgalore
man-db py-pyscreeze trimmomatic
manta py-pyserial trinity
mapnik py-pyshp trinotate
mapserver py-pyside trnascan-se
mapsplice2 py-pyside2 tskit
maq py-pysmartdl tulip
margo py-pysocks turbine
mariadb py-pysolar turbomole
mariadb-c-client py-pyspark turnserver
mark py-pyspellchecker tut
masa py-pysqlite twm
mash py-pysqlite3 tycho2
masurca py-pystac typhon
mathematica py-pysurfer typhonio
matio py-pytailf uchardet
matlab py-pytest ucx
maven py-pytest-arraydiff udunits
maverick py-pytest-benchmark ufo-core
mawk py-pytest-cache ufo-filters
mbdyn py-pytest-check-links ufs-utils
mbedtls py-pytest-cov ufs-weather-model
mc py-pytest-cpp uftrace
mcl py-pytest-doctestplus umap
mcpp py-pytest-flake8 umesimd
mcutils py-pytest-flakes umoci
mdsplus py-pytest-forked umpire
mdtest py-pytest-html unblur
med py-pytest-httpbin uncrustify
meep py-pytest-isort unibilium
mefit py-pytest-metadata unifdef
megadock py-pytest-mock unifyfs
megahit py-pytest-mypy unigen
melissa py-pytest-openfiles unison
memaxes py-pytest-pep8 units
memcached py-pytest-qt unittest-cpp
meme py-pytest-random-order universal-ctags
memkind py-pytest-runner unixodbc
memsurfer py-pytest-timeout unqlite
memtester py-pytest-xdist unrar
meraculous py-python-benedict unuran
mercurial py-python-box unzip
mercury py-python-certifi-win32 upcxx
mesa py-python-constraint upp
mesa-demos py-python-daemon uqtk
mesa-glu py-python-dateutil uriparser
mesa18 py-python-docs-theme usbutils
meshkit py-python-editor usearch
meshtool py-python-engineio userspace-rcu
meson py-python-fmask utf8cpp
mesquite py-python-fsutil utf8proc
metabat py-python-gitlab util-linux
metall py-python-igraph util-linux-uuid
metaphysicl py-python-jenkins util-macros
metis py-python-json-logger uvw
metkit py-python-keystoneclient vacuumms
mfem py-python-ldap valgrind
mg py-python-levenshtein vampirtrace
mgis py-python-logstash vapor
microbiomeutil py-python-louvain vardictjava
microsocks py-python-lzo variorum
migraphx py-python-magic varnish-cache
migrate py-python-mapnik varscan
mii py-python-meep vasp
minc-toolkit py-python-memcached vbfnlo
minced py-python-oauth2 vc
mindthegap py-python-picard vcftools
miniaero py-python-rapidjson vcsh
miniamr py-python-slugify vdt
miniapp-ascent py-python-socketio veccore
miniasm py-python-subunit vecgeom
miniconda2 py-python-swiftclient veclibfort
miniconda3 py-python-utils vecmem
minife py-python-xlib vegas2
miniforge3 py-python-xmp-toolkit veloc
minigan py-python3-xlib velvet
minighost py-pythonqwt velvetoptimiser
minigmg py-pythonsollya verilator
minimap2 py-pythran verrou
minimd py-pytimeparse vesta
minio py-pytoml vgm
miniqmc py-pytools videoproto
minisign py-pytorch-gradual-warmup-lr viennarna
minismac2d py-pytorch-lightning viewres
minitri py-pytorch-sphinx-theme vifi
minivite py-pyts vigra
minixyce py-pytweening vim
minizip py-pytz virtest
minuit py-pyudev virtualgl
miopen-hip py-pyugrid virtuoso
miopen-opencl py-pyusb visit
miopengemm py-pyutilib visit-cgns
mira py-pyvcf visit-ffp
miranda py-pyvista visit-mfem
mirdeep2 py-pyvistaqt visit-silo
mitofates py-pywavelets visit-unv
mitos py-pywcs vizglow
mivisionx py-pyyaml vmatch
mixcr py-pyzmq vmc
mkfontdir py-qiskit-aer vmd
mkfontscale py-qiskit-terra volk
mlhka py-qpth voropp
mlocate py-qsymm votca
mlperf-deepcam py-qtawesome votca-csg
mmg py-qtconsole votca-csg-tutorials
mmv py-qtpy votca-csgapps
moab py-quantities votca-ctp
mochi-margo py-quast votca-tools
model-traits py-queryablelist votca-xtp
modeltest-ng py-questionary vpfft
modern-wheel py-radiant-mlhub vpic
modylas py-radical-entk vsearch
mofem-cephas py-radical-gtod vsftpd
mofem-fracture-module py-radical-pilot vt
mofem-minimal-surface-equation py-radical-saga vtable-dumper
mofem-users-modules py-radical-utils vtk
mokutil py-ranger-fm vtk-h
molcas py-rapidfuzz vtk-m
molden py-rarfile vvtest
mongo-c-driver py-rasterio w3emc
mongo-cxx-driver py-ratelim w3m
mongodb-async-driver py-ratelimiter w3nco
mono py-raven wannier90
montage py-ray warpx
moosefs py-rbtools watch
moreutils py-rdflib wayland
mosh py-rdt wayland-protocols
mosquitto py-readme-renderer wcs
mothur py-recommonmark wcslib
motif py-redis webbench
motioncor2 py-regex weechat
mount-point-attributes py-reindent weighttp
mozjs py-reportlab wget
mpark-variant py-repoze-lru wgrib2
mpas-model py-reproject wgsim
mpc py-requests which
mpdecimal py-requests-ftp whizard
mpe2 py-requests-futures wi4mpi
mpest py-requests-mock windowswmproto
mpfi py-requests-ntlm wiredtiger
mpfr py-requests-oauthlib wireshark
mpi-bash py-requests-toolbelt wonton
mpibind py-requests-unixsocket wordnet
mpich py-resampy workrave
mpifileutils py-responses wps
mpilander py-restview wrf
mpileaks py-resultsfile wrf-io
mpip py-retry wrk
mpir py-retry-decorator wsmancli
mpitrampoline py-retrying wt
mpix-launch-swift py-retworkx wtdbg2
mpl py-rfc3986 wxparaver
mpt py-rich wxpropgrid
mptensor py-rios wxwidgets
mrbayes py-rioxarray x11perf
mrbench py-rise xabclib
mrchem py-rmm xapian-core
mrcpp py-rnacocktail xauth
mrnet py-rnc2rng xbacklight
mrtrix3 py-robotframework xbiff
mscgen py-rope xbitmaps
msgpack-c py-rosdep xbraid
mshadow py-rosdistro xcalc
msmc py-rosinstall xcb-demo
msmc2 py-rosinstall-generator xcb-proto
mstk py-rospkg xcb-util
mt-metis py-rply xcb-util-cursor
mujoco py-rpy2 xcb-util-errors
multitail py-rq xcb-util-image
multitime py-rsa xcb-util-keysyms
multiverso py-rsatoolbox xcb-util-renderutil
mumax py-rseqc xcb-util-wm
mummer py-rtree xcb-util-xrm
mummer4 py-ruamel-ordereddict xcfun
mumps py-ruamel-yaml xclip
munge py-ruamel-yaml-clib xclipboard
muparser py-rx xclock
muparserx py-s3cmd xcmiscproto
muscle py-s3fs xcmsdb
muse py-s3transfer xcompmgr
musl py-sacremoses xconsole
muster py-saga-python xcursor-themes
mutationpp py-salib xcursorgen
mvapich2 py-sanic xdbedizzy
mvapich2-gdr py-scandir xdelta
mvapich2x py-schema xditview
mxm py-scientificpython xdm
mxml py-scikit-build xdmf3
mxnet py-scikit-fmm xdotool
mysql py-scikit-fuzzy xdpyinfo
mysqlpp py-scikit-image xdriinfo
n2p2 py-scikit-learn xedit
nacos py-scikit-learn-extra xerces-c
nag py-scikit-optimize xeus
nalu py-scinum xev
nalu-wind py-scipy xextproto
namd py-scooby xeyes
nano py-scoop xf86bigfontproto
nanoflann py-scp xf86dga
nanomsg py-scs xf86dgaproto
nanopb py-seaborn xf86driproto
nasm py-secretstorage xf86miscproto
nauty py-segmentation-models-pytorch xf86rushproto
nbdkit py-selectors34 xf86vidmodeproto
ncbi-magicblast py-selenium xfd
ncbi-rmblastn py-semantic-version xfindproxy
ncbi-toolkit py-semver xfontsel
nccl py-send2trash xforms
nccl-tests py-sentencepiece xfs
nccmp py-sentry-sdk xfsdump
ncdu py-seqeval xfsinfo
ncftp py-seriate xfsprogs
ncio py-serpent xfwp
ncl py-setproctitle xgamma
nco py-setupmeta xgboost
ncompress py-setuptools xgc
ncurses py-setuptools-cpp xhmm
ncview py-setuptools-git xhost
ndiff py-setuptools-rust xineramaproto
neartree py-setuptools-scm xinit
nek5000 py-setuptools-scm-git-archive xinput
nekbone py-sfepy xios
nekcem py-sgp4 xkbcomp
nekrs py-sh xkbdata
nektar py-shapely xkbevd
nektools py-shellingham xkbprint
nemsio py-shiboken xkbutils
nemsiogfs py-shiboken2 xkeyboard-config
neo4j py-shortuuid xkill
neovim py-shroud xlc
nest py-shtab xlf
net-snmp py-sierrapy xload
netcdf-c py-simplegeneric xlogo
netcdf-cxx py-simplejson xlsatoms
netcdf-cxx4 py-simplekml xlsclients
netcdf-fortran py-singledispatch xlsfonts
netdata py-sip xmag
netgauge py-six xman
netgen py-skl2onnx xmessage
netkit-ftp py-slepc4py xmh
netlib-lapack py-slurm-pipeline xmlf90
netlib-scalapack py-smac xmlrpc-c
netlib-xblas py-smart-open xmlto
netpbm py-smmap xmodmap
netperf py-snappy xmore
nettle py-sncosmo xnnpack
neuron py-sniffio xorg-cf-files
newt py-snowballstemmer xorg-docs
nextflow py-snuggs xorg-gtest
nfft py-sobol-seq xorg-server
nfs-ganesha py-sonlib xorg-sgml-doctools
nfs-utils py-sortedcollections xphelloworld
nghttp2 py-sortedcontainers xplor-nih
nginx py-soundfile xplsprinters
ngmerge py-soupsieve xpmem
ngmlr py-spacy xpr
ngspice py-spacy-models-en-core-web-sm xprehashprinterlist
nicstat py-spacy-models-en-vectors-web-lg xprop
nim py-sparse xproperty
ninja py-spatialist xproto
ninja-fortran py-spatialite xproxymanagementprotocol
nix py-spdlog xqilla
njet py-spectra xrandr
nlcglib py-speech-recognition xrdb
nlohmann-json py-spefile xrefresh
nlohmann-json-schema-validator py-spgl1 xrootd
nlopt py-spglib xrx
nmap py-sphinx xsbench
nn-c py-sphinx-argparse xscope
nnpack py-sphinx-autodoc-typehints xsd
nnvm py-sphinx-bootstrap-theme xsdk
node-js py-sphinx-copybutton xsdk-examples
notmuch py-sphinx-gallery xset
npb py-sphinx-multiversion xsetmode
npm py-sphinx-rtd-theme xsetpointer
npth py-sphinxautomodapi xsetroot
nrm py-sphinxcontrib-applehelp xsimd
ns-3-dev py-sphinxcontrib-bibtex xsm
nseg py-sphinxcontrib-devhelp xstdcmap
nsimd py-sphinxcontrib-htmlhelp xtensor
nspr py-sphinxcontrib-issuetracker xtensor-python
nss py-sphinxcontrib-jsmath xterm
ntirpc py-sphinxcontrib-mermaid xtl
ntl py-sphinxcontrib-napoleon xtrans
ntpoly py-sphinxcontrib-programoutput xtrap
numactl py-sphinxcontrib-qthelp xts
numamma py-sphinxcontrib-serializinghtml xvidtune
numap py-sphinxcontrib-trio xvinfo
numdiff py-sphinxcontrib-websupport xwd
nut py-sphobjinv xwidgets
nvdimmsim py-spyder xwininfo
nvhpc py-spykeutils xwud
nvptx-tools py-sqlalchemy xxd-standalone
nvshmem py-sqlalchemy-stubs xxhash
nvtop py-sqlalchemy-utils xyce
nwchem py-sqlparse xz
nyancat py-srsly yajl
ocaml py-sshtunnel yambo
ocamlbuild py-statsmodels yaml-cpp
occa py-stdlib-list yara
oce py-stestr yarn
oci-systemd-hook py-stevedore yasm
ocl-icd py-stopit ycsb
oclgrind py-storm yoda
oclint py-stratify yorick
oclock py-stsci-distutils z-checker
octave py-submitit z3
octave-arduino py-subprocess32 zabbix
octave-control py-subrosa zfp
octave-gsl py-svgpathtools zfs
octave-instrctl py-svgutils zig
octave-io py-svgwrite zip
octave-optim py-symengine zipkin
octave-quaternion py-symfit zlib
octave-signal py-sympy zlib-ng
octave-splines py-syned zoltan
octave-statistics py-systemd-python zookeeper
octave-struct py-tables zookeeper-benchmark
octave-symbolic py-tabulate zsh
octopus py-tap-py zstd
odc py-tatsu zstr
of-catalyst py-tblib zziplib
of-precice py-templateflow None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Build Dependencies:
gnuconfig
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 16.0.0, 15.1.0, 15.0.1, 15.0.0, 14.1.0, 14.0.0, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, autodiff, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-pytest, root
Link Dependencies:
cuda, autodiff, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-pytest, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.1, 0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
gnuconfig, bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
gnuconfig, automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gnuconfig, gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Build Dependencies:
gnuconfig
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
gnuconfig
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.7.2, 2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.7.0, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, boost
Link Dependencies:
cuda, cmake, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alpgen

Homepage:
Spack package:
Versions:
2.1.4
Build Dependencies:
cmake
Description:
A collection of codes for the generation of multi-parton processes in hadronic collisions.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, 1.0.9, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Build Dependencies:
gnuconfig
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, parallel-netcdf, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, parallel-netcdf, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amdblis

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, blas, python
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
gnuconfig, numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
cuda, cmake, mpi, amrex, hypre, netcdf-c, masa, openfast
Link Dependencies:
cuda, mpi, amrex, hypre, netcdf-c, masa, openfast
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 22.01, 21.12, 21.11, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand, rocprim
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.935, 0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
gnuconfig, python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.3.5, 2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
3.2.0, 3.1.0, 3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : https://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.1, 3.0, 2.2
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, mesa18, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
mesa18, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.4, 0.0.3, 0.0.2, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, zlib, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Link Dependencies:
zlib, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
gnuconfig, swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apktool

Homepage:
Spack package:
Versions:
2.6.0
Build Dependencies:
java
Run Dependencies:
java
Description:
A tool for reverse engineering 3rd party, closed, binary Android apps.

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Build Dependencies:
gnuconfig
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.5.2, 0.5
Build Dependencies:
cuda, cmake, nlohmann-json, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, nlohmann-json, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy, py-pybind11
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.1, 1.0, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Build Dependencies:
gnuconfig
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Build Dependencies:
gnuconfig
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
21.0
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
21.1, 21.0.2, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, fides, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, fides, dray
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python, autoconf, automake, libtool
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
Build Dependencies:
gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Build Dependencies:
gnuconfig
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.1.4, 5.1.3, 5.0.1, 4.0.1
Build Dependencies:
cmake, zlib, boost
Link Dependencies:
zlib, boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
4.5.2, 4.5.0, 4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, rsync
Link Dependencies:
rsync, comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Build Dependencies:
gnuconfig
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59
Build Dependencies:
gnuconfig, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Build Dependencies:
gnuconfig
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodiff

Homepage:
Spack package:
Versions:
0.6.4, 0.5.13
Build Dependencies:
cmake, eigen, py-pybind11
Link Dependencies:
eigen
Run Dependencies:
py-pybind11
Description:
autodiff is automatic differentiation made easier for C++.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
gnuconfig, pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.5, 1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
gnuconfig, autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.4, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-pip, py-wheel, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.17.10, 2.16.1
Build Dependencies:
gnuconfig, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree, zlib
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, kvtree, dtcmp, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, kvtree, dtcmp, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.1.0, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
gnuconfig, glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

bacio

Homepage:
Spack package:
Versions:
2.5.0, 2.4.1
Build Dependencies:
cmake
Description:
The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gnuconfig, gmp, llvm, libyaml
Link Dependencies:
gmp, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.4, 4.3
Build Dependencies:
gnuconfig, ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
gnuconfig, automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.0, 0.1.4, 0.1.1
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
gnuconfig, ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.14, 1.13, 1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gnuconfig, gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.6, 8.0.0, 7.6.0, 7.4.4
Build Dependencies:
gnuconfig, libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Build Dependencies:
gnuconfig
Description:
Oracle Berkeley DB

berkeleygw

Homepage:
Spack package:
Versions:
3.0.1, 3.0, 2.1
Build Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py, fftw, amdfftw, openblas, amdblis
Link Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, fftw, amdfftw, openblas, amdblis
Run Dependencies:
python, py-numpy, py-setuptools, py-h5py
Test Dependencies:
perl
Description:
BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
gnuconfig, flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigdft-atlab

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3
Build Dependencies:
gnuconfig, mpi, openbabel, bigdft-futile
Link Dependencies:
mpi, openbabel, bigdft-futile
Description:
BigDFT-atlab: library for ATomic related operations.

bigdft-chess

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-CheSS: A module for performing Fermi Operator Expansions via Chebyshev Polynomials.

bigdft-core

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Link Dependencies:
cuda, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Run Dependencies:
python
Description:
BigDFT-core: the core components of BigDFT, an electronic structure calculation based on Daubechies wavelets.

bigdft-futile

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, libyaml, py-pyyaml, mpi
Link Dependencies:
cuda, blas, lapack, libyaml, py-pyyaml, mpi
Run Dependencies:
python
Description:
BigDFT-futile: a library handling most common FORTRAN low-level operations, like memory managment, profiling routines, I/O operations. It also supports yaml output and parsing for fortran programs. It also provides wrappers routines to MPI and linear algebra operations. This library is intensively used in BigDFT packages.

bigdft-libabinit

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, mpi, libxc, bigdft-futile
Link Dependencies:
mpi, libxc, bigdft-futile
Run Dependencies:
python
Description:
BigDFT-libABINIT: this is a subsection of files coming from ABINIT software package, to which BigDFT has been coupled since the early days. It handles different parts like symmetries, ewald corrections, PAW routines, density and potential mixing routines and some MD minimizers.

bigdft-psolver

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-Psolver: a flexible real-space Poisson Solver based on Interpolating Scaling Functions. It constitutes a fundamental building block of BigDFT code, and it can also be used separately and linked to other codes.

bigdft-spred

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Link Dependencies:
blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Run Dependencies:
python
Description:
BigDFT-spred: a library for structure prediction tools, that is compiled on top of BigDFT routines.

bigdft-suite

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0, 1.8.3, 1.8.2, 1.8.1
Build Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Link Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Run Dependencies:
python
Description:
BigDFT-suite: the complete suite of BigDFT for electronic structure calculation based on Daubechies wavelets.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
gnuconfig, pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
gnuconfig, zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
gnuconfig, boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
gnuconfig, diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
gnuconfig, glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blaspp

Homepage:
Spack package:
Versions:
master, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
gnuconfig, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
gnuconfig, python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Build Dependencies:
gnuconfig
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gnuconfig, autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, py-virtualenv, py-pip, py-wheel, zlib, libsigsegv
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib, libsigsegv
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Build Dependencies:
gnuconfig
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.78.0, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Build Dependencies:
gnuconfig
Description:
A Binary Decision Diagram library.

bufr

Homepage:
Spack package:
Versions:
11.5.0
Build Dependencies:
cmake
Description:
The NOAA bufr library contains subroutines, functions and other utilities that can be used to read (decode) and write (encode) data in BUFR, which is a WMO standard format for the exchange of meteorological data. This is part of the NCEPLIBS project.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig, libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
20210808
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
gnuconfig, tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Build Dependencies:
gnuconfig
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

c3d

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
cmake, itk
Link Dependencies:
itk
Description:
Image processing and conversion tool based on ITK.

ca-certificates-mozilla

Homepage:
Spack package:
Versions:
2021-07-05, 2021-05-25, 2021-04-13, 2021-01-19, 2020-12-08, 2020-10-14, 2020-07-22, 2020-06-24, 2020-01-01, 2019-11-27, 2019-10-16, 2019-08-28
Description:
The Mozilla CA certificate store in PEM format

cabana

Homepage:
Spack package:
Versions:
master, 0.4.0, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, googletest, kokkos-legacy, kokkos, arborx, hypre-cmake, heffte, mpi
Link Dependencies:
kokkos-legacy, kokkos, arborx, hypre-cmake, heffte, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cuda, cmake, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
cuda, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.4, 1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
gnuconfig, libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
gnuconfig, cairo, libsigcpp, pkgconfig
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cuda, cmake, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow, python
Link Dependencies:
cuda, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
main, 0.3.0, 0.2.3, 0.2.2, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, cub, blt
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cub, blt
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1, 0.0
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.5.1, 2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.8.0, 0.7.0
Build Dependencies:
gnuconfig
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai, cub
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0.1, 3.11.11, 3.11.6, 3.11.5, 2.2.19
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks. For versions 5.7 and greater use the paraview package.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.0-preview4, 3.0.0-preview3, 2.13.8, 2.13.7, 2.13.6, 2.13.5, 2.13.4, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
gnuconfig, coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cbflib

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
m4
Description:
CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
rpcsvc-proto, libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elfutils, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains collector and runtime contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package:
Versions:
4.5.1, 4.5, 4.4.2, 4.4.1, 4.4, 4.3, 4.2.1, 4.2, 4.1, 4.0, 3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
cmake, zstd, gperf, hiredis, libxslt, zlib
Link Dependencies:
zstd, gperf, hiredis, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.6, 2.5, 2.4
Build Dependencies:
gnuconfig, cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccls

Homepage:
Spack package:
Versions:
0.20210330, 0.20201025
Build Dependencies:
cmake, llvm, rapidjson
Link Dependencies:
llvm, rapidjson
Description:
C/C++ language server

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.2.10, 7.2.4, 7.2.3, 7.2.2, 7.2.1, 7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
gnuconfig, openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94m, 0.94h
Build Dependencies:
gnuconfig, gmp
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Build Dependencies:
gnuconfig
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
2.0.3, 2.0.2, 2.0.1, 2.0.0, 1.9.10, 1.9.9, 1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
gnuconfig, pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
4.0.0, 3.0.0, 2.0.0, 1.0.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, libceed, occa, nekrs, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, libceed, occa, nekrs, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
2.0.0, 1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
4.0.0, 3.49, 3.48, 3.47, 3.45, 3.42, 3.41, 3.37
Build Dependencies:
gnuconfig, curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
master, 0.7.1, 0.7.0
Build Dependencies:
gnuconfig, ncurses, readline, autoconf, automake, libtool, m4, flex, bison, texinfo
Link Dependencies:
ncurses, readline
Run Dependencies:
gdb
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, pkgconfig, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cget

Homepage:
Spack package:
Versions:
0.1.9
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-six, py-click, py-subprocess32
Run Dependencies:
python, py-six, py-click, py-subprocess32
Description:
Cmake package retrieval.

cgl

Homepage:
Spack package:
Versions:
0.60.3
Build Dependencies:
gnuconfig, coinutils, osi, clp
Link Dependencies:
coinutils, osi, clp
Description:
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
gnuconfig, mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.2.0, 4.1.2, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chaco

Homepage:
Spack package:
Versions:
develop, 2020-07-16
Build Dependencies:
cmake
Description:
Graph partitioning library

chai

Homepage:
Spack package:
Versions:
develop, main, 2.4.0, 2.3.0, 2.2.2, 2.2.1, 2.2.0, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt,