Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 6946 mainline packages:

3dtk openvdb py-sqlalchemy-stubs
3proxy openwsman py-sqlalchemy-utils
7zip ophidia-analytics-framework py-sqlitedict
abacus ophidia-io-server py-sqlparse
abduco ophidia-primitives py-srsly
abi-compliance-checker ophidia-server py-sseclient
abi-dumper opium py-sshtunnel
abinit optional-lite py-stack-data
abseil-cpp optipng py-starlette
abyss opus py-starlette-context
accfft or-tools py-statmorph
acct oracle-instant-client py-statsmodels
accumulo oras py-stdlib-list
ace orbit2 py-stestr
acfl orc py-stevedore
ack orca py-stomp-py
acl orfm py-stopit
acpica-tools orientdb py-storm
acpid orthofiller py-stratify
activeharmony orthofinder py-strawberryfields
activemq orthomcl py-stsci-distutils
acts osi py-stui
acts-dd4hep osmctools py-submitit
actsvg osmesa py-subrosa
addrwatch osqp py-supervisor
adept-utils ossp-uuid py-svgpath
adf osu-micro-benchmarks py-svgpathtools
adiak otf py-svgutils
adios otf2 py-svgwrite
adios2 ovito py-symengine
adlbx p11-kit py-symfit
admixtools p3dfft3 py-sympy
adms p4est py-syned
adol-c p7zip py-systemd-python
advancecomp pacbio-daligner py-tables
adwaita-icon-theme pacbio-damasker py-tabulate
aegean pacbio-dazz-db py-tap-py
aeskeyfind pacbio-dextractor py-tatsu
aespipe pacifica-cli py-tblib
agile packmol py-tbparse
agrep pacparser py-tempita
aida pacvim py-templateflow
akantu pagit py-tempora
alan pagmo py-tenacity
albany pagmo2 py-tensorboard
albert pajeng py-tensorboard-data-server
alembic pal py-tensorboard-plugin-wit
alglib palace py-tensorboardx
allpaths-lg palisade-development py-tensorflow
alluxio paml py-tensorflow-datasets
alpaka panda py-tensorflow-estimator
alpgen pandaseq py-tensorflow-hub
alquimia pandoc py-tensorflow-metadata
alsa-lib pango py-tensorflow-probability
aluminum pangolin py-termcolor
amber pangomm py-terminado
amd-aocl papi py-terminaltables
amdblis papyrus py-tern
amdfftw paradiseo py-testfixtures
amdlibflame parallel py-testinfra
amdlibm parallel-netcdf py-testpath
amdscalapack parallelio py-testrepository
amg parallelmergetree py-testresources
amg2013 paraver py-testscenarios
amgx paraview py-testtools
aml parflow py-tetoolkit
amp parmetis py-text-unidecode
ampl parmgridgen py-textblob
ampliconnoise parmmg py-texttable
ampt parquet-cpp py-tfdlpack
amqp-cpp parquet-format py-theano
amr-wind parsec py-thewalrus
amrex parsimonator py-thinc
amrfinder parsplice py-thirdorder
amrvis pasta py-threadpoolctl
anaconda2 pastix py-throttler
anaconda3 patch py-tifffile
andi patchelf py-timm
angsd patchutils py-tinyarray
anicalculator pathfinder py-tinycss2
ant pax-utils py-tinydb
antimony pbbam py-tokenize-rt
antlr pbmpi py-tokenizers
ants pciutils py-toml
any2fasta pcl py-tomli
aocc pcma py-tomli-w
aocl-sparse pcre py-tomlkit
aoflagger pcre2 py-tomopy
aom pcsclite py-toolz
aomp pdc py-toposort
apachetop pdf2svg py-torch
apcomp pdftk py-torch-cluster
ape pdsh py-torch-geometric
aperture-photometry pdt py-torch-nvidia-apex
apex pegtl py-torch-scatter
apfel pennant py-torch-sparse
apktool percept py-torch-spline-conv
apple-gl percona-server py-torchaudio
apple-glu perfstubs py-torchdata
apple-libunwind perl py-torchdiffeq
apple-libuuid perl-acme-damn py-torchfile
applewmproto perl-algorithm-diff py-torchgeo
appres perl-alien-build py-torchmeta
apptainer perl-alien-libxml2 py-torchmetrics
apr perl-alien-svn py-torchsummary
apr-util perl-app-cmd py-torchtext
aragorn perl-appconfig py-torchvision
arbor perl-archive-zip py-tornado
arborx perl-array-utils py-tox
arc perl-b-hooks-endofscope py-tpot
archer perl-bignum py-tqdm
argobots perl-bio-searchio-hmmer py-traceback2
argon2 perl-bioperl py-traitlets
argp-standalone perl-bit-vector py-traits
args perl-cairo py-traitsui
argtable perl-capture-tiny py-transformers
aria2 perl-carp py-transforms3d
arm-forge perl-carp-clan py-treehash
armadillo perl-cgi py-triangle
armpl-gcc perl-class-data-inheritable py-trimesh
arpack-ng perl-class-inspector py-trojanzoo-sphinx-theme
arrayfire perl-class-load py-tuiview
arrow perl-class-load-xs py-tuspy
asagi perl-class-method-modifiers py-tuswsgi
ascent perl-clone py-tweedledum
asciidoc perl-clone-choose py-twine
asciidoc-py3 perl-compress-raw-bzip2 py-twisted
asdcplib perl-compress-raw-zlib py-typed-ast
asdf-cxx perl-config-general py-typeguard
asio perl-config-simple py-types-dataclasses
aspa perl-contextual-return py-types-pkg-resources
aspcud perl-cpan-meta-check py-types-psutil
aspect perl-data-dumper py-types-python-dateutil
aspell perl-data-optlist py-types-requests
aspell6-de perl-data-stag py-types-setuptools
aspell6-en perl-date-manip py-types-typed-ast
aspell6-es perl-db-file py-types-urllib3
aspera-cli perl-dbd-mysql py-typesentry
assimp perl-dbd-pg py-typeshed-client
astra perl-dbd-sqlite py-typing-extensions
astral perl-dbi py-typish
astyle perl-devel-cycle py-tzlocal
at-spi2-atk perl-devel-globaldestruction py-ubiquerg
at-spi2-core perl-devel-overloadinfo py-ucsf-pyem
atf perl-devel-stacktrace py-ucx-py
athena perl-devel-symdump py-uhi
atk perl-digest-md5 py-ujson
atlas perl-digest-md5-file py-umalqurra
atmi perl-dist-checkconflicts py-umap-learn
atom-dft perl-encode-locale py-umi-tools
atompaw perl-error py-uncertainties
atop perl-eval-closure py-unicycler
attr perl-exception-class py-unidecode
audacious perl-exporter-lite py-unittest2py3k
audacity perl-exporter-tiny py-unshare
audit-userspace perl-extutils-config py-unyt
augustus perl-extutils-depends py-update-checker
authd perl-extutils-helpers py-uproot
authselect perl-extutils-installpaths py-uproot3
autoconf perl-extutils-makemaker py-uproot3-methods
autoconf-archive perl-extutils-pkgconfig py-uproot4
autodiff perl-ffi-checklib py-uritemplate
autodock-gpu perl-file-chdir py-url-normalize
autodock-vina perl-file-copy-recursive py-urllib3
autofact perl-file-find-rule py-urllib3-secure-extra
autogen perl-file-grep py-urwid
automaded perl-file-homedir py-us
automake perl-file-listing py-usgs
avizo perl-file-pushd py-utils
aws-ofi-nccl perl-file-remove py-uvicorn
aws-ofi-rccl perl-file-sharedir-install py-uvloop
aws-parallelcluster perl-file-slurp py-uvw
aws-sdk-cpp perl-file-slurp-tiny py-uwsgi
awscli perl-file-slurper py-vcf-kit
axel perl-file-temp py-vcrpy
axl perl-file-which py-vcstool
axom perl-font-ttf py-vcstools
babelflow perl-forks py-vcversioner
babeltrace perl-fth py-vector
babl perl-gd py-vector-quantize-pytorch
bacio perl-gdgraph py-vermin
backupninja perl-gdgraph-histogram py-versioneer
bam-readcount perl-gdtextutil py-vine
bamaddrg perl-getopt-tabular py-virtualenv
bamdst perl-graph py-virtualenv-clone
bamtools perl-graph-readwrite py-virtualenvwrapper
bamutil perl-hash-merge py-visdom
banner perl-html-parser py-voluptuous
bannergrab perl-html-tagset py-vsc-base
barrnap perl-http-cookies py-vsc-install
bart perl-http-daemon py-vsts
barvinok perl-http-date py-vsts-cd-manager
bash perl-http-message py-walinuxagent
bash-completion perl-http-negotiate py-wand
bashtop perl-inline py-wandb
bat perl-inline-c py-warlock
batchedblas perl-io-all py-warpx
batctl perl-io-compress py-wasabi
bats perl-io-html py-watchdog
baurmc perl-io-prompt py-wcsaxes
bazel perl-io-sessiondata py-wcwidth
bbcp perl-io-socket-ssl py-webargs
bbmap perl-io-string py-webencodings
bc perl-io-stringy py-webkit-server
bcache perl-io-tty py-weblogo
bcftools perl-ipc-run py-webob
bcl2fastq2 perl-json py-websocket-client
bdftopcf perl-libwww-perl py-websockets
bdii perl-libxml-perl py-werkzeug
bdsim perl-list-moreutils py-wget
bdw-gc perl-list-moreutils-xs py-whatshap
beagle perl-log-log4perl py-wheel
beakerlib perl-logger-simple py-whichcraft
bear perl-lwp-mediatypes py-whoosh
beast-tracer perl-lwp-protocol-https py-widgetsnbextension
beast1 perl-mailtools py-win-unicode-console
beast2 perl-math-bezier py-wincertstore
bedops perl-math-bigint py-word2number
bedtools2 perl-math-bigrat py-wordcloud
beforelight perl-math-cdf py-workload-automation
benchmark perl-math-cephes py-wradlib
berkeley-db perl-math-matrixreal py-wrapt
berkeleygw perl-math-round py-wsproto
bertini perl-math-symbolic py-wstool
bgpdump perl-math-vecstat py-wub
bib2xhtml perl-mce py-wurlitzer
bigdft-atlab perl-mni-perllib py-ww
bigdft-chess perl-module-build py-wxmplot
bigdft-core perl-module-build-tiny py-wxpython
bigdft-futile perl-module-corelist py-x21
bigdft-libabinit perl-module-implementation py-xanadu-cloud-client
bigdft-psolver perl-module-install py-xarray
bigdft-spred perl-module-runtime py-xattr
bigdft-suite perl-module-runtime-conflicts py-xdot
bigreqsproto perl-module-scandeps py-xenv
bind9 perl-moo py-xgboost
binutils perl-moose py-xlrd
bioawk perl-mozilla-ca py-xlsxwriter
biobambam2 perl-mro-compat py-xlwt
biobloom perl-namespace-clean py-xmlrunner
biopieces perl-net-http py-xmltodict
bird perl-net-scp-expect py-xonsh
bismark perl-net-ssleay py-xopen
bison perl-number-compare py-xpyb
bitgroomingz perl-number-format py-xrootdpyfs
bitlbee perl-object-insideout py-xtb
bitmap perl-package-deprecationmanager py-xvfbwrapper
bitsery perl-package-stash py-xxhash
blackhat perl-package-stash-xs py-yacman
blaspp perl-padwalker py-yacs
blast-legacy perl-parallel-forkmanager py-yahmm
blast-plus perl-params-util py-yajl
blast2go perl-params-validate py-yamlreader
blat perl-parse-recdescent py-yapf
blaze perl-path-tiny py-yarl
blis perl-pathtools py-yaspin
bliss perl-pdf-api2 py-yolk3k
blitz perl-pegex py-youtube-dl
blktrace perl-perl-unsafe-signals py-yq
bloaty perl-perl-version py-yt
blogbench perl-perl4-corelibs py-yte
blt perl-perl6-slurp py-ytopt
bmake perl-perlio-gzip py-ytopt-autotune
bmi perl-perlio-utf8-strict py-zarr
bml perl-readonly py-zc-buildout
bohrium perl-regexp-common py-zc-lockfile
boinc-client perl-role-tiny py-zict
bolt perl-scalar-list-utils py-zipfile-deflate64
bonniepp perl-scalar-util-numeric py-zipp
bookleaf-cpp perl-set-intervaltree py-zipstream-new
boost perl-set-intspan py-zope-event
boostmplcartesianproduct perl-set-scalar py-zope-interface
botan perl-soap-lite py-zxcvbn
bowtie perl-star-fusion pygmo
bowtie2 perl-statistics-basic pythia6
boxlib perl-statistics-descriptive pythia8
bpp-core perl-statistics-pca python
bpp-phyl perl-sub-exporter q-e-sirius
bpp-phyl-omics perl-sub-exporter-progressive qb3
bpp-popgen perl-sub-identify qbank
bpp-seq perl-sub-install qca
bpp-seq-omics perl-sub-name qcachegrind
bpp-suite perl-sub-quote qcat
bracken perl-sub-uplevel qd
braker perl-svg qemu
branson perl-swissknife qgis
breakdancer perl-sys-sigaction qgraf
bref3 perl-task-weaken qhull
breseq perl-term-readline-gnu qjson
bricks perl-termreadkey qmcpack
bridger perl-test-cleannamespaces qmd-progress
brigand perl-test-deep qnnpack
brltty perl-test-differences qorts
brotli perl-test-exception qoz
brpc perl-test-fatal qperf
brunsli perl-test-leaktrace qrupdate
brynet perl-test-memory-cycle qscintilla
bsseeker2 perl-test-more qt
btop perl-test-most qt-base
bubblewrap perl-test-needs qt-creator
bucky perl-test-output qt-declarative
buddy perl-test-requires qt-quick3d
bueno perl-test-requiresinternet qt-quicktimeline
bufr perl-test-warn qt-shadertools
bumpversion perl-test-warnings qtgraph
busco perl-text-csv qthreads
busybox perl-text-diff qtkeychain
butter perl-text-format qtltools
butterflypack perl-text-glob qualimap
bwa perl-text-simpletable quantum-espresso
bwtool perl-text-soundex quartz
byacc perl-text-unidecode qucs
byobu perl-thread-queue quicksilver
byte-unixbench perl-threads quota
byteman perl-time-hires qwt
bzip2 perl-time-piece qwtpolar
c perl-timedate r
c-ares perl-tk r-a4
c-blosc perl-try-tiny r-a4base
c-blosc2 perl-uri r-a4classif
c-lime perl-uri-encode r-a4core
c3d perl-want r-a4preproc
ca-certificates-mozilla perl-www-robotrules r-a4reporting
cabana perl-xml-dom r-abadata
cachefilesd perl-xml-dom-xpath r-abaenrichment
caffe perl-xml-filter-buffertext r-abind
cairo perl-xml-libxml r-absseq
cairomm perl-xml-libxslt r-acde
caliper perl-xml-namespacesupport r-acepack
callflow perl-xml-parser r-acgh
callpath perl-xml-parser-lite r-acme
camellia perl-xml-quote r-ada
camp perl-xml-regexp r-adabag
camx perl-xml-sax r-ade4
canal perl-xml-sax-base r-adegenet
candle-benchmarks perl-xml-sax-writer r-adegraphics
cans perl-xml-simple r-adephylo
cantera perl-xml-twig r-adespatial
canu perl-xml-writer r-adgoftest
cap3 perl-xml-xpathengine r-adsplit
capnproto perl-yaml r-aer
capstone perl-yaml-libyaml r-afex
cardioid perl-yaml-tiny r-affxparser
care pestpp r-affy
casacore petaca r-affycomp
cask petsc r-affycompatible
casper pexsi r-affycontam
cassandra pfapack r-affycoretools
catalyst pfft r-affydata
catch2 pflask r-affyexpress
cbc pflogger r-affyilm
cbench pflotran r-affyio
cbflib pfunit r-affypdnn
cblas pgdspider r-affyplm
cbtf pgi r-affyqcreport
cbtf-argonavis pgplot r-affyrnadegradation
cbtf-argonavis-gui phantompeakqualtools r-agdex
cbtf-krell pharokka r-agilp
cbtf-lanl phast r-agimicrorna
cc65 phasta r-aims
ccache phist r-aldex2
ccfits phoenix r-allelicimbalance
ccls photos r-alpine
ccs-qcd photos-f r-als
cctools php r-alsace
cdbfasta phrap-crossmatch-swat r-altcdfenvs
cdd phred r-amap
cddlib phylip r-amelia
cdecimal phylobayesmpi r-ampliqueso
cdhit phyluce r-analysispageserver
cdo picard r-anaquin
ceed picsar r-aneufinder
celeritas picsarlite r-aneufinderdata
cepgen pidx r-animation
cereal pig r-annaffy
ceres-solver pigz r-annotate
cernlib pika r-annotationdbi
cfitsio pika-algorithms r-annotationfilter
cgal pilercr r-annotationforge
cgdb pilon r-annotationhub
cgdcbxd pindel r-anytime
cget pinentry r-aod
cgl pinfo r-ape
cgm pipework r-aplot
cgns piranha r-argparse
chaco pism r-aroma-light
chai pixman r-ash
chameleon pixz r-askpass
changa pkg-config r-assertive
channelflow pkgconf r-assertive-base
chaparral pktools r-assertive-code
chapel planck-likelihood r-assertive-data
chaplin plasma r-assertive-data-uk
charliecloud plink r-assertive-data-us
charmpp plink-ng r-assertive-datetimes
chatterbug plplot r-assertive-files
check plumed r-assertive-matrices
chgcentre ply r-assertive-models
chlorop pmdk r-assertive-numbers
chombo pmemkv r-assertive-properties
chrony pmerge r-assertive-reflection
chrpath pmgr-collective r-assertive-sets
cinch pmix r-assertive-strings
circos pmlib r-assertive-types
cistem pnfft r-assertthat
citcoms pngquant r-backports
cityhash pngwriter r-bamsignals
cjson pnmpi r-base64
ck poamsa r-base64enc
clamav pocl r-bayesm
clamr podio r-bayesplot
clapack podman r-bbmisc
clara poke r-beachmat
claw polymake r-beanplot
clblast polypolish r-beeswarm
cleaveland4 poplddecay r-bfast
cleverleaf poppler r-bfastspatial
clfft poppler-data r-bglr
clhep popt r-bh
cli11 porta r-biasedurn
clinfo portage r-bibtex
clingo portcullis r-bigalgebra
clingo-bootstrap ports-of-call r-bigmemory
cln postgis r-bigmemory-sri
cloc postgresql r-bindr
cloog povray r-bindrcpp
cloverleaf powerapi r-bio3d
cloverleaf3d powertop r-biobase
clp ppl r-biocfilecache
clustal-omega pplacer r-biocgenerics
clustalw ppopen-appl-amr-fdm r-biocinstaller
cmake ppopen-appl-bem r-biocio
cmaq ppopen-appl-bem-at r-biocmanager
cmark ppopen-appl-dem-util r-biocneighbors
cmdstan ppopen-appl-fdm r-biocparallel
cminpack ppopen-appl-fdm-at r-biocsingular
cmocka ppopen-appl-fem r-biocstyle
cmockery ppopen-appl-fvm r-biocversion
cmor ppopen-at r-biom-utils
cni-plugins ppopen-math-mp r-biomart
cnmem ppopen-math-vis r-biomartr
cnpy prank r-biomformat
cntk precice r-biostrings
cntk1bitsgd predixy r-biovizbase
cnvnator premake-core r-bit
codar-cheetah presentproto r-bit64
code-server preseq r-bitops
codec2 presto r-blavaan
codes price r-blob
coevp prime95 r-blockmodeling
cohmm primer3 r-bluster
coin3d prinseq-lite r-bmp
coinhsl printproto r-bookdown
coinutils prism r-boot
collectd prmon r-boruta
collier prng r-brew
colm probconsrna r-bridgesampling
colordiff procenv r-brio
comd process-in-process r-brms
comgr procps r-brobdingnag
commons-lang procps-ng r-broom
commons-lang3 prod-util r-bsgenome
commons-logging prodigal r-bsgenome-hsapiens-ucsc-hg19
compadre professor r-bslib
compiz profugusmc r-bsseq
compose proj r-bumphunter
compositeproto prokka r-bwstest
conda4aarch64 prometheus r-c50
conduit prophecy4f r-ca
conmon protobuf r-cachem
connect-proxy protobuf-c r-cairo
conserver proxymngr r-callr
console-bridge prrte r-car
constype pruners-ninja r-caracas
consul ps-lite r-cardata
converge pscmc r-caret
cool psi4 r-caretensemble
coral psimd r-caroline
corenlp pslib r-category
coreutils psm r-catools
corset psmc r-cca
cosbench psrcat r-ccp
cosign psrchive r-cdcfluview
cosma pstreams r-cellranger
cosmoflow-benchmark pthreadpool r-champ
cosmomc pugixml r-champdata
cosp2 pulseaudio r-checkmate
costa pumi r-checkpoint
cotter pv r-chemometrics
cowsay pvm r-chipseq
cp2k pwgen r-chron
cpio pxz r-circlize
cplex py-3to2 r-circstats
cpmd py-4suite-xml r-class
cpp-argparse py-a2wsgi r-classint
cpp-httplib py-abcpy r-cli
cpp-termcolor py-abipy r-clipr
cppad py-about-time r-clisymbols
cppcheck py-absl-py r-clue
cppcodec py-accimage r-cluster
cppcoro py-acme-tiny r-clustergeneration
cppgsl py-adal r-clusterprofiler
cpprestsdk py-adb-enhanced r-cmdstanr
cppunit py-addict r-cner
cppzmq py-adios r-coda
cpu-features py-advancedhtmlparser r-codetools
cpuinfo py-aenum r-codex
cqrlib py-affine r-coin
cquery py-agate r-colorspace
cracklib py-agate-dbf r-colourpicker
cradl py-agate-excel r-combinat
cram py-agate-sql r-commonmark
cray-fftw py-ahpy r-complexheatmap
cray-libsci py-aiobotocore r-compositions
cray-mpich py-aiocontextvars r-compquadform
cray-mvapich2 py-aiodns r-condop
cray-pmi py-aiofiles r-conquer
creduce py-aiohttp r-construct
crmc py-aiohttp-cors r-convevol
cromwell py-aioitertools r-copula
cromwell-womtool py-aioredis r-corhmm
cronie py-aiosignal r-corpcor
crtm py-aiosqlite r-corrplot
crtm-fix py-alabaster r-countrycode
crunch py-alembic r-covr
cryptopp py-alive-progress r-cowplot
cryptsetup py-alphafold r-cpp11
csa-c py-altair r-crayon
cscope py-altgraph r-credentials
csdp py-amqp r-crosstalk
ctffind py-amrex r-crul
ctpl py-angel r-ctc
ctre py-aniso8601 r-cubature
cub py-anndata r-cubist
cuba py-annexremote r-curl
cube py-annoy r-dada2
cube-blade py-ansi2html r-data-table
cubelib py-ansible r-dbi
cubew py-antlr4-python3-runtime r-dbplyr
cubist py-anuga r-debugme
cuda py-anyio r-decipher
cuda-memtest py-anytree r-delayedarray
cudnn py-apache-beam r-delayedmatrixstats
cufflinks py-apache-libcloud r-deldir
cunit py-apex r-dendextend
cupla py-apipkg r-deoptim
cups py-apispec r-deoptimr
curl py-appdirs r-deriv
cusz py-applicationinsights r-desc
cutensor py-appnope r-deseq
cutlang py-apptools r-deseq2
cutlass py-apscheduler r-desolve
cvector py-arcgis r-devtools
cvs py-archspec r-dexseq
cxx py-arcp r-diagrammer
cxxopts py-argcomplete r-dicekriging
cxxtest py-argh r-dichromat
cyrus-sasl py-argon2-cffi r-diffobj
czmq py-argon2-cffi-bindings r-diffusionmap
dakota py-args r-digest
daligner py-arm-pyart r-diptest
dalton py-arrow r-dirichletmultinomial
damageproto py-arviz r-dismo
damaris py-asciitree r-distributional
damask py-asdf r-diversitree
damask-grid py-ase r-dmrcate
damask-mesh py-asgiref r-dnacopy
damselfly py-asn1crypto r-do-db
darshan-runtime py-aspy-yaml r-domc
darshan-util py-asserts r-doparallel
dash py-asteval r-dorng
datamash py-astor r-dose
dataspaces py-astpretty r-dosnow
datatransferkit py-astroid r-dotcall64
date py-astropy r-downlit
dateutils py-astropy-healpix r-downloader
davix py-astropy-helpers r-dplyr
dbcsr py-asttokens r-dqrng
dbow2 py-astunparse r-dss
dbus py-async-generator r-dt
dbus-glib py-async-lru r-dtplyr
dbxtool py-async-timeout r-dtw
dcap py-asyncio r-dygraphs
dcm2niix py-asynctest r-dynamictreecut
dcmtk py-atomicwrites r-e1071
dd4hep py-atpublic r-earth
ddd py-atropos r-ecp
ddt py-ats r-edger
dealii py-attmap r-effects
dealii-parameter-gui py-attrs r-elemstatlearn
debbuild py-audioread r-ellipse
debugedit py-auditwheel r-ellipsis
decentralized-internet py-autograd r-emmeans
deconseq-standalone py-autograd-gamma r-emmli
dejagnu py-automat r-energy
delly2 py-autopep8 r-enrichplot
delphes py-autoray r-ensembldb
delta py-auxlib r-envstats
denovogear py-avro r-ergm
dftbplus py-avro-json-serializer r-estimability
dftd3-lib py-avro-python3 r-europepmc
dftd4 py-awesome-slugify r-evaluate
dftfe py-awkward r-evd
dhpmm-f py-awkward0 r-exactextractr
dhtest py-awkward1 r-exomecopy
dia py-azote r-exomedepth
dialign py-azure-batch r-experimenthub
dialign-tx py-azure-cli r-expint
diamond py-azure-cli-command-modules-nspkg r-expm
dicom3tools py-azure-cli-core r-factoextra
diffmark py-azure-cli-nspkg r-factominer
diffsplice py-azure-cli-telemetry r-fansi
diffutils py-azure-common r-farver
digitrounding py-azure-core r-fastcluster
dihydrogen py-azure-cosmos r-fastdigest
dimemas py-azure-datalake-store r-fastica
ding-libs py-azure-functions-devops-build r-fastmap
dire py-azure-graphrbac r-fastmatch
direnv py-azure-identity r-fastmatrix
discovar py-azure-keyvault r-fda
discovardenovo py-azure-keyvault-certificates r-fdb-infiniummethylation-hg18
disktype py-azure-keyvault-keys r-fdb-infiniummethylation-hg19
dislin py-azure-keyvault-nspkg r-fds
distbench py-azure-keyvault-secrets r-ff
distcc py-azure-loganalytics r-fftwtools
diy py-azure-mgmt-advisor r-fgsea
dlb py-azure-mgmt-apimanagement r-fields
dlib py-azure-mgmt-appconfiguration r-filehash
dlpack py-azure-mgmt-applicationinsights r-filelock
dmd py-azure-mgmt-authorization r-findpython
dmidecode py-azure-mgmt-batch r-fit-models
dmlc-core py-azure-mgmt-batchai r-fitdistrplus
dmtcp py-azure-mgmt-billing r-flashclust
dmxproto py-azure-mgmt-botservice r-flexclust
dnsmap py-azure-mgmt-cdn r-flexmix
dnsmasq py-azure-mgmt-cognitiveservices r-fnn
dnstop py-azure-mgmt-compute r-fontawesome
dnstracer py-azure-mgmt-consumption r-forcats
docbook-xml py-azure-mgmt-containerinstance r-foreach
docbook-xsl py-azure-mgmt-containerregistry r-forecast
dock py-azure-mgmt-containerservice r-foreign
dorian3d-dlib py-azure-mgmt-core r-formatr
dos2unix py-azure-mgmt-cosmosdb r-formula
dosfstools py-azure-mgmt-datalake-analytics r-fpc
dotconf py-azure-mgmt-datalake-store r-fpcompare
dotnet-core-sdk py-azure-mgmt-datamigration r-fracdiff
double-conversion py-azure-mgmt-deploymentmanager r-fs
doxygen py-azure-mgmt-devtestlabs r-futile-logger
dpcpp py-azure-mgmt-dns r-futile-options
dpdk py-azure-mgmt-eventgrid r-future
draco py-azure-mgmt-eventhub r-future-apply
dracut py-azure-mgmt-hdinsight r-gamlss
dramsim2 py-azure-mgmt-imagebuilder r-gamlss-data
dramsim3 py-azure-mgmt-iotcentral r-gamlss-dist
dray py-azure-mgmt-iothub r-gamm4
dri2proto py-azure-mgmt-iothubprovisioningservices r-gargle
dri3proto py-azure-mgmt-keyvault r-gbm
drill py-azure-mgmt-kusto r-gbrd
drishti py-azure-mgmt-loganalytics r-gcrma
dropwatch py-azure-mgmt-managedservices r-gdalutilities
druid py-azure-mgmt-managementgroups r-gdalutils
ds py-azure-mgmt-maps r-gdata
dsdp py-azure-mgmt-marketplaceordering r-gdsfmt
dsfmt py-azure-mgmt-media r-geiger
dsqss py-azure-mgmt-monitor r-genefilter
dsrc py-azure-mgmt-msi r-genelendatabase
dssp py-azure-mgmt-netapp r-genemeta
dtc py-azure-mgmt-network r-geneplotter
dtcmp py-azure-mgmt-nspkg r-generics
dtf py-azure-mgmt-policyinsights r-genetics
duperemove py-azure-mgmt-privatedns r-genie3
dust py-azure-mgmt-rdbms r-genomeinfodb
dwz py-azure-mgmt-recoveryservices r-genomeinfodbdata
dxt-explorer py-azure-mgmt-recoveryservicesbackup r-genomicalignments
dyninst py-azure-mgmt-redhatopenshift r-genomicfeatures
dysco py-azure-mgmt-redis r-genomicranges
e2fsprogs py-azure-mgmt-relay r-gensa
e3sm-kernels py-azure-mgmt-reservations r-geojsonsf
e4s-cl py-azure-mgmt-resource r-geometries
ea-utils py-azure-mgmt-search r-geometry
eagle py-azure-mgmt-security r-geomorph
earlyoom py-azure-mgmt-servicebus r-geonames
easi py-azure-mgmt-servicefabric r-geoquery
easybuild py-azure-mgmt-signalr r-geor
ebms py-azure-mgmt-sql r-geosphere
ecbuild py-azure-mgmt-sqlvirtualmachine r-gert
eccodes py-azure-mgmt-storage r-getopt
ecdsautils py-azure-mgmt-trafficmanager r-getoptlong
ecflow py-azure-mgmt-web r-ggally
eckit py-azure-multiapi-storage r-ggbeeswarm
eclipse-gcj-parser py-azure-nspkg r-ggbio
ecos py-azure-storage-blob r-ggdendro
ecoslim py-azure-storage-common r-ggforce
ecp-data-vis-sdk py-azure-storage-nspkg r-ggfun
ecp-proxy-apps py-azureml-automl-core r-ggjoy
ed py-azureml-core r-ggmap
editline py-azureml-dataprep r-ggnewscale
editres py-azureml-dataprep-native r-ggplot2
edm4hep py-azureml-dataprep-rslex r-ggplotify
eem py-azureml-dataset-runtime r-ggpubr
efivar py-azureml-pipeline r-ggraph
eigen py-azureml-pipeline-core r-ggrastr
eigenexa py-azureml-pipeline-steps r-ggrepel
elasticsearch py-azureml-sdk r-ggridges
elemental py-azureml-telemetry r-ggsci
elfio py-azureml-train r-ggsignif
elfutils py-azureml-train-automl-client r-ggthemes
elk py-azureml-train-core r-ggtree
elmerfem py-azureml-train-restclients-hyperdrive r-ggvis
elpa py-babel r-gh
elsd py-backcall r-gistr
elsdc py-backports-abc r-git2r
elsi py-backports-cached-property r-gitcreds
emacs py-backports-entry-points-selectable r-glimma
ember py-backports-lzma r-glmgampoi
emboss py-backports-os r-glmnet
embree py-backports-ssl-match-hostname r-globaloptions
enca py-backports-tempfile r-globals
enchant py-backports-weakref r-globaltest
energyplus py-bagit r-glue
entrezdirect py-bagit-profile r-gmodels
entt py-bakta r-gmp
environment-modules py-bandit r-go-db
enzo py-basemap r-goftest
enzyme py-bash-kernel r-gofuncr
eospac py-basis-set-exchange r-googledrive
epics-base py-batchspawner r-googlesheets4
epics-ca-gateway py-bayesian-optimization r-googlevis
epics-pcas py-bcbio-gff r-goplot
epics-snmp py-bcolz r-gosemsim
epsic py-bcrypt r-goseq
eq-r py-bdbag r-gostats
er py-beaker r-gower
erfa py-beancount r-gparotation
erlang py-beautifulsoup4 r-gplots
ermod py-beniget r-graph
erne py-bids-validator r-graphlayouts
es-shell py-bidscoin r-grbase
esmf py-bidskit r-gridbase
espanso py-bigdft r-gridextra
essl py-bigfloat r-gridgraphics
esys-particle py-billiard r-gsa
etcd py-binaryornot r-gsalib
ethminer py-bintrees r-gseabase
ethtool py-binwalk r-gsl
etsf-io py-bioblend r-gsodr
eve py-biom-format r-gson
evemu py-biomine r-gss
everytrace py-biopandas r-gstat
everytrace-example py-biopython r-gsubfn
evieext py-bitarray r-gtable
evtgen py-bitshuffle r-gtools
exa py-bitstring r-gtrellis
exabayes py-black r-gviz
exaca py-bleach r-gwmodel
exago py-blessed r-hardhat
examinimd py-blessings r-haven
examl py-blight r-hdf5array
exampm py-blinker r-hdf5r
exasp2 py-blis r-hdo-db
exawind py-blosc r-hdrcde
exaworks py-bmap-tools r-here
exciting py-bmtk r-hexbin
exempi py-bokeh r-hh
exiv2 py-boltons r-highr
exmcutils py-boom-boot-manager r-hmisc
exodusii py-boost-histogram r-hms
exonerate py-boto r-hoardr
exonerate-gff3 py-boto3 r-htmltable
expat py-botocore r-htmltools
expect py-botorch r-htmlwidgets
express py-bottle r-httpcode
extrae py-bottleneck r-httpuv
exuberant-ctags py-breakseq2 r-httr
eztrace py-breathe r-hwriter
f2c py-brian r-hypergraph
f3d py-brian2 r-ica
f77-zmq py-brotlipy r-ids
f90cache py-bsddb3 r-igraph
fabtests py-build r-illumina450probevariants-db
fairlogger py-bx-python r-illuminahumanmethylation450kanno-ilmn12-hg19
faiss py-cachecontrol r-illuminahumanmethylation450kmanifest
fakechroot py-cached-property r-illuminahumanmethylationepicanno-ilm10b4-hg19
fakexrandr py-cachetools r-illuminahumanmethylationepicmanifest
falcon py-cachy r-illuminaio
fann py-cairocffi r-imager
faodel py-cantoolz r-impute
fargparse py-carputils r-influencer
fasd py-cartopy r-ini
fast-global-file-status py-catalogue r-inline
fasta py-catkin-pkg r-insight
fastani py-cattrs r-interactivedisplaybase
fastdb py-cclib r-interp
fastdfs py-cdo r-intervals
fastjar py-cdsapi r-inum
fastjet py-cekit r-ipred
fastjson py-celery r-iranges
fastmath py-cerberus r-irdisplay
fastme py-certifi r-irkernel
fastp py-certipy r-irlba
fastphase py-cf-units r-isdparser
fastq-screen py-cffconvert r-islr
fastqc py-cffi r-iso
fastqvalidator py-cfgrib r-isoband
fasttext py-cfgv r-isva
fasttransforms py-cftime r-iterators
fasttree py-cgen r-jade
fastx-toolkit py-chai r-janitor
faust py-chainer r-jaspar2018
fbgemm py-chainmap r-jomo
fca py-chalice r-jpeg
fcgi py-chardet r-jquerylib
fd py-charm4py r-jsonify
fd-find py-charset-normalizer r-jsonlite
fdb py-checkm-genome r-kegg-db
fdupes py-cheetah3 r-kegggraph
feh py-cheroot r-keggrest
fenics py-cherrypy r-kernlab
fenics-basix py-chex r-kernsmooth
fenics-dolfinx py-chronyk r-kknn
fenics-ufcx py-ci-info r-klar
feq-parse py-ci-sdr r-knitr
fermi py-cinema-lib r-kpmt
fermikit py-cinemasci r-ks
fermisciencetools py-circus r-ksamples
ferret py-citeproc-py r-labeling
feynhiggs py-clean-text r-labelled
ffb py-cleo r-lambda-r
ffmpeg py-click r-laplacesdemon
ffr py-click-didyoumean r-lars
ffsb py-click-plugins r-later
ffte py-click-repl r-lattice
fftw py-cligj r-latticeextra
fftx py-clikit r-lava
fgsl py-climate r-lavaan
fides py-clint r-lazyeval
figlet py-clipboard r-ldheatmap
figtree py-cloudauthz r-leafem
file py-cloudbridge r-leaflet
filebench py-cloudpickle r-leaflet-providers
filo py-clustershell r-leafpop
filtlong py-cmake r-leaps
fimpute py-cmake-format r-learnbayes
findbugs py-cmocean r-leiden
findutils py-cmseq r-lfe
fio py-cmsml r-lhs
fipscheck py-cmyt r-libcoin
fish py-cnvkit r-libpressio
fixesproto py-coapthon3 r-lifecycle
fj py-codecov r-limma
fjcontrib py-codepy r-limsolve
fl py-coilmq r-linprog
flac py-colorama r-listenv
flamemaster py-colorcet r-lme4
flann py-colorclass r-lmertest
flap py-colored r-lmtest
flash py-colored-traceback r-lobstr
flashdimmsim py-coloredlogs r-locfit
flatbuffers py-colorful r-log4r
flatcc py-colorio r-loo
flcl py-colorlog r-lpsolve
flecsale py-colorlover r-lpsolveapi
flecsi py-colormath r-lsei
flecsph py-colorpy r-lubridate
fleur py-colorspacious r-lumi
flex py-colossalai r-lwgeom
flexi py-commonmark r-magic
flexiblas py-conan r-magick
flibcpp py-configargparse r-magrittr
flink py-configobj r-makecdfenv
flint py-configparser r-maldiquant
flit py-configspace r-manipulatewidget
fltk py-connectionpool r-mapplots
flume py-constantly r-mapproj
flux-core py-contextily r-maps
flux-pmix py-contextlib2 r-maptools
flux-sched py-contexttimer r-mapview
fluxbox py-continuum r-markdown
fms py-contourpy r-marray
fmt py-control r-mass
foam-extend py-convertdate r-mathjaxr
folly py-convokit r-matlab
font-util py-cookiecutter r-matr
fontcacheproto py-copulas r-matrix
fontconfig py-correctionlib r-matrixgenerics
fontsproto py-counter r-matrixmodels
fonttosfnt py-cov-core r-matrixstats
form py-coverage r-mclust
formetis py-coveralls r-mcmc
fortran py-cppheaderparser r-mcmcglmm
fortrilinos py-cppy r-mcmcpack
fossil py-crashtest r-mco
foundationdb py-crcmod r-mda
fox py-crossmap r-memoise
fp16 py-cryolobm r-memuse
fpart py-cryptography r-mergemaid
fpc py-cssselect r-metap
fpchecker py-csvkit r-metapod
fping py-ctgan r-methylumi
fplll py-cudf r-mgcv
fplo py-cuml r-mgraster
fpm py-cupy r-mice
fpocket py-current r-microbenchmark
fpzip py-cutadapt r-mime
fqtrim py-cvxopt r-minfi
fr-hit py-cvxpy r-miniui
fraggenescan py-cwl-upgrader r-minqa
freebayes py-cwl-utils r-misc3d
freefem py-cwltool r-missmethyl
freeglut py-cx-oracle r-mitml
freeimage py-cycler r-mitools
freeipmi py-cylp r-mixtools
freesurfer py-cymem r-mlbench
freetype py-cyordereddict r-mlinterfaces
freexl py-cython r-mlr
fribidi py-cython-bbox r-mlrmbo
frontier-client py-cyvcf2 r-mmwrweek
frontistr py-d2to1 r-mnormt
fseq py-dadi r-mockery
fsl py-damask r-modelmetrics
fslsfonts py-darshan r-modelr
fstobdf py-dask r-modeltools
fstrack py-dask-glm r-mpm
ftgl py-dask-ml r-mscoreutils
ftjam py-dask-sphinx-theme r-msnbase
ftk py-dataclasses r-multcomp
ftobjectlibrary py-datacube r-multcompview
ftxui py-datalad r-multicool
fujitsu-fftw py-datalad-container r-multitaper
fujitsu-frontistr py-datalad-hirni r-multtest
fujitsu-mpi py-datalad-metadata-model r-munsell
fujitsu-ssl2 py-datalad-metalad r-mutoss
fullock py-datalad-neuroimaging r-mvtnorm
funhpc py-datalad-webapp r-mzid
fuse-overlayfs py-datasets r-mzr
fxdiv py-dateparser r-nada
fxt py-datrie r-nanotime
fyba py-dbf r-ncbit
fzf py-dbfread r-ncdf4
g2 py-dcm2bids r-network
g2c py-deap r-networkd3
g2o py-debtcollector r-neuralnet
g2tmpl py-debugpy r-nfactors
g4abla py-decorator r-nimble
g4emlow py-deepdiff r-nleqslv
g4ensdfstate py-deepecho r-nlme
g4incl py-deephyper r-nloptr
g4ndl py-deepsig r-nmf
g4neutronxs py-deepsig-biocomp r-nmof
g4particlexs py-deeptools r-nnet
g4photonevaporation py-deeptoolsintervals r-nnls
g4pii py-defusedxml r-nonnest2
g4radioactivedecay py-demjson r-nor1mix
g4realsurface py-dendropy r-nortest
g4saiddata py-deprecated r-np
g4tendl py-deprecation r-npsurv
gamess-ri-mp2-miniapp py-descartes r-numderiv
gams py-devito r-oligoclasses
gapbs py-devlib r-openssl
gapcloser py-dgl r-openxlsx
gapfiller py-dh-scikit-optimize r-optimparallel
garfieldpp py-dictdiffer r-optimx
gasnet py-dictobj r-optparse
gatb-core py-dill r-ordinal
gate py-dipy r-org-hs-eg-db
gatepet2stir py-discover r-organismdbi
gatetools py-diskcache r-packrat
gatk py-distance r-pacman
gaudi py-distlib r-paleotree
gaussian py-distributed r-pamr
gaussian-src py-distro r-pan
gaussian-view py-django r-parallelly
gawk py-dlcpar r-parallelmap
gbl py-dm-haiku r-paramhelpers
gblocks py-dm-tree r-party
gcc py-dnaio r-partykit
gccmakedep py-dnspython r-patchwork
gccxml py-docker r-pathview
gchp py-dockerpy-creds r-pbapply
gconf py-docopt r-pbdzmq
gcta py-docstring-parser r-pbivnorm
gdal py-docstring-to-markdown r-pbkrtest
gdb py-docutils r-pcamethods
gdbm py-docutils-stubs r-pcapp
gdk-pixbuf py-dominate r-pegas
gdl py-dotnetcore2 r-permute
gdrcopy py-downhill r-pfam-db
geant3 py-doxypypy r-phangorn
geant4 py-dpath r-phantompeakqualtools
geant4-data py-drep r-pheatmap
geant4-vmc py-drmaa r-philentropy
gearshifft py-dryscrape r-phylobase
gegelati py-duecredit r-phyloseq
gegl py-dulwich r-phylostratr
gemma py-dunamai r-phytools
gemmlowp py-dvc r-picante
genemark-et py-dxchange r-pillar
genesis py-dxfile r-pinfsc50
genfit py-dynim r-pixmap
gengeo py-earthengine-api r-pkgbuild
gengetopt py-easybuild-easyblocks r-pkgcache
genie py-easybuild-easyconfigs r-pkgconfig
genomefinisher py-easybuild-framework r-pkgdepends
genometools py-eccodes r-pkgdown
genomeworks py-ecdsa r-pkgload
genrich py-ecos r-pkgmaker
geode py-edam-ontology r-plogr
geoip py-edffile r-plot3d
geoip-api-c py-editables r-plotly
geopm py-editdistance r-plotmo
geos py-edlib r-plotrix
gettext py-efficientnet-pytorch r-pls
gexiv2 py-eg r-plyr
gflags py-einops r-pmcmr
gfsio py-elasticsearch r-pmcmrplus
gftl py-elasticsearch-dsl r-png
gftl-shared py-elephant r-polspline
gh py-emcee r-polyclip
ghost py-emoji r-polynom
ghostscript py-empy r-pool
ghostscript-fonts py-entrypoints r-poorman
giblib py-envisage r-popgenome
giflib py-ephem r-popvar
gimp py-epydoc r-posterior
ginac py-espresso r-powerlaw
ginkgo py-espressopp r-prabclus
giraph py-et-xmlfile r-pracma
git py-etelemetry r-praise
git-annex py-etils r-preprocesscore
git-fat-git py-eventlet r-prettydoc
git-filter-repo py-exceptiongroup r-prettyunits
git-imerge py-execnet r-proc
git-lfs py-executing r-processx
gitconddb py-exhale r-prodlim
gl2ps py-exifread r-profvis
glab py-exodus-bundler r-progress
glew py-extension-helpers r-progressr
glfmultiples py-extras r-proj
glfw py-ez-setup r-proj4
glib py-f90nml r-projpred
glib-networking py-f90wrap r-promises
glibmm py-fabric r-protgenerics
glimmer py-fabric3 r-proto
glm py-faker r-proxy
global py-falcon r-pryr
globalarrays py-fallocate r-ps
glog py-fastai r-pscbs
gloo py-fastaindex r-pspline
glpk py-fastapi r-psych
glproto py-fastapi-utils r-ptw
gluegen py-fastavro r-purrr
glusterfs py-fastcache r-pvclust
glvis py-fastcluster r-qqconf
glx py-fastcore r-qs
gmake py-fastcov r-qtl
gmap-gsnap py-fastdownload r-quadprog
gmic py-fastdtw r-quantmod
gmime py-fasteners r-quantreg
gmodel py-fastfold r-quantro
gmp py-fastjsonschema r-questionr
gmsh py-fastpath r-quickplot
gmt py-fastprogress r-qvalue
gmtsar py-fastrlock r-r-cache
gnat py-faststructure r-r-methodss3
gnds py-fava r-r-oo
gnome-common py-fenics-basix r-r-utils
gnuconfig py-fenics-dijitso r-r6
gnupg py-fenics-dolfinx r-ragg
gnuplot py-fenics-ffc r-rainbow
gnuradio py-fenics-ffcx r-randomfields
gnutls py-fenics-fiat r-randomfieldsutils
go py-fenics-instant r-randomforest
go-bootstrap py-fenics-ufl r-randomglm
go-md2man py-file-magic r-ranger
gobject-introspection py-filelock r-rann
goblin-hmc-sim py-filemagic r-rapidjsonr
goma py-filetype r-rapiserialize
google-crc32c py-filterpy r-rappdirs
googletest py-findlibs r-raster
gosam-contrib py-fiona r-rbgl
goshimmer py-fire r-rbibutils
gotcha py-fiscalyear r-rbokeh
gource py-fisher r-rcmdcheck
gpcnet py-fits-tools r-rcolorbrewer
gperf py-fitter r-rcpp
gperftools py-fixtures r-rcppannoy
gpgme py-flake8 r-rcpparmadillo
gpi-2 py-flake8-import-order r-rcppblaze
gpi-space py-flake8-polyfill r-rcppcctz
gplates py-flameprof r-rcppcnpy
gprolog py-flask r-rcppdate
gptl py-flask-babel r-rcppde
gptune py-flask-compress r-rcppeigen
gpu-burn py-flask-cors r-rcppgsl
gqrx py-flask-restful r-rcpphnsw
gr-osmosdr py-flask-socketio r-rcppml
grabix py-flask-sqlalchemy r-rcppparallel
grace py-flatbuffers r-rcppprogress
grackle py-flatten-dict r-rcpproll
gradle py-flawfinder r-rcpptoml
grads py-flexmock r-rcppziggurat
grafana py-flexx r-rcurl
grandr py-flit r-rda
graph500 py-flit-core r-rdpack
graphblast py-flit-scm r-readbitmap
graphicsmagick py-flufl-lock r-readr
graphite2 py-flye r-readxl
graphlib py-fn-py r-reams
graphmap py-fonttools r-recipes
graphviz py-ford r-registry
grass py-formatizer r-rematch
graylog2-server py-formulaic r-rematch2
grep py-fortran-language-server r-remotes
grib-api py-fortranformat r-renv
grib-util py-fparser r-reordercluster
grid py-fprettify r-reportingtools
gridlab-d py-fracridge r-repr
grnboost py-freezegun r-reprex
groff py-frozendict r-reproducible
gromacs py-frozenlist r-require
gromacs-chain-coordinate py-fs r-reshape
gromacs-swaxs py-fsspec r-reshape2
grpc py-ftfy r-restfulr
gsettings-desktop-schemas py-ftputil r-reticulate
gsl py-funcy r-rex
gslib py-fury r-rfast
gtk-doc py-fusepy r-rferns
gtkmm py-future r-rgdal
gtkorvo-atl py-fuzzywuzzy r-rgenoud
gtkorvo-cercs-env py-fypp r-rgeos
gtkorvo-dill py-galaxy-containers r-rgexf
gtkorvo-enet py-galaxy-job-metrics r-rgl
gtkplus py-galaxy-objectstore r-rgooglemaps
gtksourceview py-galaxy-sequence-utils r-rgraphviz
gts py-galaxy-tool-util r-rhdf5
guacamole-client py-galaxy-util r-rhdf5filters
guacamole-server py-galaxy2cwl r-rhdf5lib
guidance py-gast r-rhmmer
guile py-gcovr r-rhtslib
gunrock py-gcs-oauth2-boto-plugin r-rinside
gurobi py-gcsfs r-rio
gxsview py-gdbgui r-rjags
gzip py-gdc-client r-rjava
h2database py-gee-asset-manager r-rjson
h5bench py-geeadd r-rjsonio
h5cpp py-geeup r-rlang
h5hut py-genders r-rle
h5part py-geneimpacts r-rmariadb
h5utils py-genshi r-rmarkdown
h5z-zfp py-gensim r-rminer
haccabana py-geoalchemy2 r-rmpfr
hacckernels py-geocube r-rmpi
hackrf-host py-geographiclib r-rms
hadoop py-geopandas r-rmutil
hadoop-xrootd py-geoplot r-rmysql
hal py-geopy r-rnaseqmap
half py-getorganelle r-rncl
hama py-gevent r-rnexml
hapcut2 py-gf256 r-rngtools
hapdip py-gffutils r-rnoaa
haploview py-ghp-import r-robust
haproxy py-gimmik r-robustbase
hardlink py-gin-config r-roc
harfbuzz py-git-review r-rocr
harminv py-gitdb r-rodbc
hashcat py-gitpython r-rook
haveged py-glmnet r-rots
hazelcast py-glmsingle r-roxygen2
hbase py-glob2 r-rpart
hbm-dramsim2 py-globus-sdk r-rpart-plot
hc py-gluoncv r-rpmm
hcoll py-glymur r-rpostgres
hdf py-gnuplot r-rpostgresql
hdf-eos2 py-goatools r-rprojroot
hdf-eos5 py-gooey r-rpsychi
hdf5 py-google r-rrblup
hdf5-blosc py-google-api-core r-rrcov
hdf5-vfd-gds py-google-api-python-client r-rrpp
hdf5-vol-async py-google-apitools r-rsamtools
hdf5-vol-cache py-google-auth r-rsconnect
hdf5-vol-external-passthrough py-google-auth-httplib2 r-rsnns
hdf5-vol-log py-google-auth-oauthlib r-rsolnp
hdfview py-google-cloud-core r-rspectra
healpix-cxx py-google-cloud-storage r-rsqlite
heaptrack py-google-crc32c r-rstan
heasoft py-google-pasta r-rstantools
heffte py-google-resumable-media r-rstatix
helib py-googleapis-common-protos r-rstudioapi
helics py-googledrivedownloader r-rsvd
help2man py-gosam r-rtracklayer
henson py-gpaw r-rtsne
hepmc py-gpustat r-runit
hepmc3 py-gputil r-runjags
hepmcanalysis py-gpy r-ruv
heppdt py-gpyopt r-rvcheck
heputils py-gpytorch r-rversions
hercules py-gql r-rvest
hermes py-grandalf r-rviennacl
herwig3 py-grapheme r-rzmq
herwigpp py-graphlib-backport r-s2
hevea py-graphql-core r-s4vectors
hh-suite py-graphviz r-samr
hibench py-gravity r-sandwich
hicolor-icon-theme py-greenlet r-sass
hicops py-grequests r-satellite
highfive py-griddataformats r-scaledmatrix
highway py-griffe r-scales
highwayhash py-grpcio r-scater
hiop py-grpcio-tools r-scattermore
hip py-gsd r-scatterpie
hip-rocclr py-gsutil r-scatterplot3d
hipace py-gtdbtk r-scdblfinder
hipblas py-guidata r-scran
hipcub py-guiqwt r-scrime
hipfft py-gunicorn r-sctransform
hipfort py-gxformat2 r-scuttle
hipify-clang py-gym r-sdmtools
hipsolver py-h11 r-segmented
hipsparse py-h2 r-selectr
hipsycl py-h5glance r-seqinr
hiredis py-h5io r-seqlogo
hisat2 py-h5netcdf r-servr
hisea py-h5py r-sessioninfo
hive py-h5sh r-seurat
hivex py-hacking r-seuratobject
hmmer py-haphpipe r-sf
hohqmesh py-hatch-fancy-pypi-readme r-sfheaders
homer py-hatch-nodejs-version r-sfsmisc
hoomd-blue py-hatch-vcs r-sftime
hoppet py-hatchet r-shadowtext
hotspot py-hatchling r-shape
hpcc py-hclust2 r-shiny
hpccg py-hdbscan r-shinydashboard
hpcg py-hdfs r-shinyfiles
hpctoolkit py-healpy r-shinyjs
hpcviewer py-heapdict r-shinystan
hpcx-mpi py-hep-ml r-shinythemes
hpddm py-hepdata-converter r-shortread
hpgmg py-hepdata-lib r-siggenes
hping py-hepdata-validator r-signac
hpl py-hepunits r-simpleaffy
hpx py-hieroglyph r-singlecellexperiment
hpx-kokkos py-hiredis r-sitmo
hpx5 py-hist r-sm
hsa-rocr-dev py-histbook r-smoof
hsakmt py-histogrammar r-sn
hsakmt-roct py-histoprint r-snakecase
hsf-cmaketools py-hjson r-snow
hssp py-holland-backup r-snowfall
hstr py-horovod r-snprelate
hto4l py-hpack r-snpstats
htop py-hpbandster r-som
htslib py-hpccm r-somaticsignatures
http-get py-hstspreload r-sourcetools
http-load py-html2text r-sp
http-parser py-html5lib r-spacetime
http-ping py-htmlgen r-spades
http-post py-htseq r-spades-addins
httpd py-httpbin r-spades-core
httperf py-httpcore r-spades-tools
httpie py-httplib2 r-spam
httping py-httpretty r-sparsem
httpress py-httpstan r-sparsematrixstats
hub py-httptools r-spatial
hudi py-httpx r-spatialeco
hugo py-huggingface-hub r-spatialpack
hunspell py-humanfriendly r-spatialreg
hw-probe py-humanize r-spatstat
hwdata py-hvac r-spatstat-core
hwloc py-hydra-core r-spatstat-data
hybpiper py-hypercorn r-spatstat-explore
hybrid-lambda py-hyperframe r-spatstat-geom
hybridsim py-hyperlink r-spatstat-linnet
hydra py-hyperopt r-spatstat-random
hydrogen py-hypothesis r-spatstat-sparse
hypar py-ibm-cloud-sdk-core r-spatstat-utils
hyperfine py-ibm-watson r-spdata
hyperqueue py-ics r-spdep
hyperscan py-identify r-speedglm
hyphen py-idna r-spem
hyphy py-idna-ssl r-splancs
hypre py-illumina-utils r-splitstackshape
hypre-cmake py-ilmbase r-sqldf
hztool py-imagecodecs r-squarem
i3 py-imagehash r-squash
ibm-databroker py-imageio r-sseq
ibm-java py-imageio-ffmpeg r-stabledist
ibmisc py-imagesize r-stanheaders
icarus py-imgaug r-stargazer
iceauth py-iminuit r-stars
icedtea py-immutabledict r-statmod
icet py-immutables r-statnet-common
ico py-importlib-metadata r-stringfish
icu4c py-importlib-resources r-stringi
id3lib py-incremental r-stringr
idba py-inference-schema r-strucchange
idl py-inheritance r-strucchangercpp
iegenlib py-iniconfig r-styler
ignite py-iniparse r-subplex
igprof py-installer r-summarizedexperiment
igraph py-instrain r-suppdists
igv py-intbitset r-survey
igvtools py-intel-openmp r-survival
ike-scan py-intensity-normalization r-sva
ilmbase py-interface-meta r-svglite
ima-evm-utils py-intervaltree r-sys
imagemagick py-invoke r-systemfonts
imake py-iocapture r-tarifx
imath py-ipaddress r-taxizedb
imgui py-ipdb r-tclust
imlib2 py-ipycanvas r-teachingdemos
imp py-ipyevents r-tensor
impalajit py-ipykernel r-tensora
improved-rdock py-ipympl r-terra
impute2 py-ipyparallel r-tester
infernal py-ipython r-testit
influxdb py-ipython-cluster-helper r-testthat
iniparser py-ipython-genutils r-textshaping
inputproto py-ipyvtk-simple r-tfbstools
intel py-ipywidgets r-tfisher
intel-daal py-irpf90 r-tfmpvalue
intel-gpu-tools py-isa-rwval r-th-data
intel-gtpin py-isal r-threejs
intel-ipp py-iso8601 r-tibble
intel-llvm py-isodate r-tictoc
intel-mkl py-isort r-tidycensus
intel-mpi py-itk r-tidygraph
intel-mpi-benchmarks py-itsdangerous r-tidyr
intel-oneapi-advisor py-jaconv r-tidyselect
intel-oneapi-ccl py-jamo r-tidytree
intel-oneapi-compilers py-jaraco-classes r-tidyverse
intel-oneapi-compilers-classic py-jaraco-functools r-tiff
intel-oneapi-dal py-javaproperties r-tigris
intel-oneapi-dnn py-jax r-timechange
intel-oneapi-dpct py-jaxlib r-timedate
intel-oneapi-dpl py-jdatetime r-tinytex
intel-oneapi-inspector py-jdcal r-tmixclust
intel-oneapi-ipp py-jedi r-tmvnsim
intel-oneapi-ippcp py-jeepney r-topgo
intel-oneapi-itac py-jellyfish r-treeio
intel-oneapi-mkl py-jinja2 r-triebeard
intel-oneapi-mpi py-jinja2-cli r-trimcluster
intel-oneapi-tbb py-jinja2-time r-truncdist
intel-oneapi-vpl py-jmespath r-truncnorm
intel-oneapi-vtune py-jmp r-trust
intel-parallel-studio py-joblib r-tseries
intel-pin py-jplephem r-tsne
intel-tbb py-jprops r-ttr
intel-xed py-jpype1 r-tweenr
interproscan py-jsmin r-txdb-hsapiens-ucsc-hg18-knowngene
intltool py-json-get r-txdb-hsapiens-ucsc-hg19-knowngene
ioapi py-json5 r-tximport
ior py-jsonargparse r-tximportdata
iozone py-jsondiff r-tzdb
ip py-jsonpatch r-ucminf
ip2 py-jsonpath-ng r-udunits2
ipcalc py-jsonpickle r-units
iperf2 py-jsonpointer r-upsetr
iperf3 py-jsonref r-urca
ipopt py-jsonschema r-urlchecker
iproute2 py-junit-xml r-urltools
iptraf-ng py-jupyter r-usethis
iq-tree py-jupyter-client r-utf8
iqtree2 py-jupyter-console r-uuid
irep py-jupyter-core r-uwot
isaac py-jupyter-packaging r-v8
isaac-server py-jupyter-packaging11 r-variantannotation
isc-dhcp py-jupyter-packaging7 r-varselrf
isescan py-jupyter-server r-vcd
isl py-jupyter-server-mathjax r-vcfr
iso-codes py-jupyter-telemetry r-vctrs
ispc py-jupyterhub r-vegan
istio py-jupyterlab r-vfs
itensor py-jupyterlab-pygments r-vgam
itk py-jupyterlab-server r-vioplot
itstool py-jupyterlab-widgets r-vipor
itsx py-jupytext r-viridis
iwyu py-kaggle r-viridislite
jackcess py-kaldiio r-visnetwork
jafka py-kb-python r-vroom
jags py-keras r-vsn
jali py-keras-applications r-waldo
jansi py-keras-preprocessing r-watermelon
jansi-native py-keras2onnx r-webshot
jansson py-kerberos r-wgcna
jasper py-keyboard r-whisker
jbigkit py-keyring r-withr
jblob py-keyrings-alt r-wk
jchronoss py-keystoneauth1 r-xde
jdk py-kitchen r-xfun
jellyfish py-kiwisolver r-xgboost
jemalloc py-kmodes r-xlconnect
jetty-project py-knack r-xlconnectjars
jhpcn-df py-kombu r-xlsx
jimtcl py-kornia r-xlsxjars
jline3 py-kosh r-xmapbridge
jmol py-kt-legacy r-xml
jogl py-kubernetes r-xml2
jose py-labours r-xnomial
jpegoptim py-lagom r-xopen
jq py-lap r-xtable
json-c py-lark r-xts
json-cwx py-lark-parser r-xvector
json-fortran py-laspy r-yaimpute
json-glib py-latexcodec r-yaml
jsoncpp py-law r-yapsa
jsonnet py-lazy r-yaqcaffy
jstorm py-lazy-object-proxy r-yarn
jube py-lazy-property r-yulab-utils
judy py-lazyarray r-zcompositions
julea py-leather r-zeallot
julia py-lerc r-zip
junit4 py-lhsmdu r-zlibbioc
justbuild py-liac-arff r-zoo
jxrlib-debian py-libclang r3d
k8 py-libconf rabbitmq
kadath py-libensemble rabbitmq-c
kafka py-liblas racket
kahip py-librosa racon
kaiju py-lifelines raft
kakoune py-lightgbm ragel
kaks-calculator py-lightning-lite raja
kaldi py-lightning-utilities ramulator
kalign py-ligo-segments randfold
kallisto py-line-profiler random123
karma py-linear-operator randrproto
kassiopeia py-linecache2 range-v3
kbd py-lineenhancer rankstr
kbproto py-lit rapidjson
kcov py-lizard raptor2
kdiff3 py-llnl-sina rarpd
kea py-llvmlite rasdaemon
kealib py-lmdb rasqal
keepalived py-lmfit ratel
keepassxc py-lmodule ravel
kentutils py-localcider raxml
keyutils py-locket raxml-ng
kibana py-lockfile ray
kicad py-logilab-common rccl
kim-api py-logmuse rccl-tests
kinesis py-loguru rclone
kineto py-loompy rdc
kitty py-looseversion rdkit
kmergenie py-louie rdma-core
kmod py-lru-dict rdp-classifier
knem py-lscsoft-glue rdptools
kokkos py-luigi re2
kokkos-kernels py-lws re2c
kokkos-kernels-legacy py-lxml readfq
kokkos-legacy py-lz4 readline
kokkos-nvcc-wrapper py-lzstring recola
kraken py-m2r recola-sm
kraken2 py-macholib recon
krakenuniq py-machotools recorder
krb5 py-macs2 recordproto
krims py-maestrowf redis
kripke py-magic redis-plus-plus
kubernetes py-mailchecker reditools
kvasir-mpl py-make redland
kvtree py-mako redland-bindings
kylin py-mapbox-earcut redset
ladot py-mapclassify redundans
laghos py-mariadb reframe
lame py-markdown regcm
lammps py-markdown-include relax
landsfcutil py-markdown-it-py relion
lanl-cmake-modules py-markdown2 remhos
lapackpp py-markovify rempi
last py-markupsafe rename
lastz py-marshmallow rendercheck
laszip py-matplotlib renderproto
latex2html py-matplotlib-inline repeatmasker
latte py-matplotlib-scalebar repeatmodeler
launchmon py-mayavi repeatscout
lazyten py-mccabe reprimand
lbann py-md-environ resourceproto
lbfgspp py-mdanalysis restic
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lbzip2 py-mechanize revocap-coupler
lcals py-medaka revocap-refiner
lcgenv py-meldmd rgb
lcio py-memory-profiler rhash
lcms py-memprof rinetd
lcov py-memray ripgrep
ldak py-mercantile riscv-gnu-toolchain
ldc py-mergedeep rivet
ldc-bootstrap py-merlin rkt-base
legion py-meshio rkt-cext-lib
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leptonica py-metaphlan rkt-dynext-lib
lerc py-metasv rkt-rackunit-lib
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lesstif py-mffpy rkt-testing-util-lib
leveldb py-mg-rast-tools rkt-zo-lib
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lhapdf5 py-minio rmgdft
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libaio py-mizani rnaz
libao py-mkdocs rng-tools
libapplewm py-mkdocs-autorefs rngstreams
libapreq2 py-mkdocs-jupyter rnpletal
libarchive py-mkdocs-material roary
libasr py-mkdocs-material-extensions rocalution
libassuan py-mkdocstrings rocblas
libatasmart py-mkdocstrings-python rocfft
libatomic-ops py-ml-collections rocketmq
libbacktrace py-mlperf-logging rocksdb
libbeagle py-mlxtend rockstar
libbeato py-mmcv rocm-bandwidth-test
libbigwig py-mmtf-python rocm-clang-ocl
libbinio py-mne rocm-cmake
libblastrampoline py-mo-pack rocm-dbgapi
libbsd py-mock rocm-debug-agent
libbson py-modin rocm-device-libs
libbytesize py-modred rocm-gdb
libc py-moltemplate rocm-opencl
libcanberra py-monotonic rocm-openmp-extras
libcap py-monty rocm-smi
libcap-ng py-more-itertools rocm-smi-lib
libcatalyst py-motmetrics rocm-tensile
libceed py-motor rocm-validation-suite
libcerf py-mouseinfo rocminfo
libcgroup py-moviepy rocprim
libcint py-mpi4py rocprofiler-dev
libcircle py-mpld3 rocrand
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libconfuse py-mplhep-data rocsparse
libcroco py-mpmath rocthrust
libctl py-mrcfile roctracer-dev
libcudf py-msal roctracer-dev-api
libcuml py-msal-extensions rocwmma
libcumlprims py-msgpack rodinia
libcxxwrap-julia py-msgpack-numpy roms
libcyaml py-msrest root
libdaemon py-msrestazure rose
libdap4 py-multi-key-dict ross
libdatrie py-multidict routinator
libdc1394 py-multiecho routino
libde265 py-multipledispatch rpcsvc-proto
libdeflate py-multiprocess rpm
libdistributed py-multiqc rr
libdivsufsort py-munch rrdtool
libdmx py-munkres rsbench
libdrm py-murmurhash rsem
libdwarf py-mutagen rsl
libeatmydata py-mx rstart
libecpint py-mxfold2 rstudio
libedit py-myhdl rsync
libefence py-mypy rsyslog
libelf py-mypy-extensions rt-tests
libemos py-mysql-connector-python rtags
libepoxy py-mysqlclient rtax
libestr py-mysqldb1 ruby
libev py-myst-parser ruby-asciidoctor
libevdev py-nanotime ruby-erubis
libevent py-nara-wpe ruby-gist
libevpath py-natsort ruby-gnuplot
libexif py-nbclassic ruby-hpricot
libfabric py-nbclient ruby-mustache
libfastcommon py-nbconvert ruby-narray
libfastjson py-nbdime ruby-rake
libffi py-nbformat ruby-rdiscount
libffs py-nbmake ruby-ronn
libfive py-nbsphinx ruby-rubyinline
libflame py-nbval ruby-svn2git
libfms py-nc-time-axis ruby-terminal-table
libfontenc py-ncbi-genome-download ruby-thor
libfs py-ndg-httpsclient ruby-tmuxinator
libfuse py-neo ruby-unicode-display-width
libfyaml py-neobolt ruby-xdg
libgain py-neotime ruby-zentest
libgcrypt py-neovim-remote runc
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libgdsii py-nestle rust-bindgen
libgeotiff py-netaddr sabre
libgff py-netcdf4 saga-gis
libgit2 py-netifaces sailfish
libgpg-error py-netket salmon
libgpuarray py-networkit salmon-tddft
libgridxc py-networkx salome-configuration
libgssglue py-neurokit2 salome-med
libgta py-neurolab salome-medcoupling
libgtextutils py-neurora sam2p
libharu py-neurotools sambamba
libhbaapi py-nexus-sdk samblaster
libheif py-nexusforge samrai
libhio py-ngs-tools samtools
libhugetlbfs py-nibabel sandbox
libiberty py-nibetaseries sarus
libibumad py-nilearn satsuma2
libical py-ninja savanna
libicd py-nipype saws
libice py-nistats sblim-sfcc
libiconv py-nitransforms sbml
libid3tag py-niworkflows sbp
libidl py-nltk sbt
libidn2 py-node-semver scala
libimagequant py-nodeenv scalasca
libimobiledevice py-nose scale
libinih py-nose-cov scallop
libint py-nose2 scalpel
libisal py-nosexcover scan-for-matches
libiscsi py-notebook scantailor
libjpeg py-notebook-shim scine-core
libjpeg-turbo py-nptyping scine-database
libjson py-npx scine-molassembler
libjwt py-ntlm-auth scine-readuct
libjxl py-ntplib scine-serenity
libkcapi py-num2words scine-sparrow
libkml py-numba scine-utilities
libksba py-numcodecs scine-xtb
liblas py-numexpr scipoptsuite
liblbfgs py-numexpr3 scitokens-cpp
liblbxutil py-numpy scons
liblockfile py-numpy-groupies scorec-core
liblognorm py-numpy-quaternion scorep
liblouis py-numpydoc scorpio
libluv py-nvidia-dali scotch
liblzf py-nvidia-ml-py scr
libmacaroons py-nvidia-ml-py3 screen
libmad py-oauth2client scripts
libmatheval py-oauthlib scrnsaverproto
libmaus2 py-ocp-models scrot
libmaxminddb py-odc-geo scs
libmbim py-olefile sctk
libmcrypt py-omegaconf sdl2
libmd py-onnx sdl2-image
libmesh py-onnx-runtime sdsl-lite
libmetalink py-onnxconverter-common seacas
libmicrodns py-onnxmltools seal
libmicrohttpd py-onnxruntime sed
libmmtf-cpp py-ont-fast5-api sensei
libmng py-opcodes sentencepiece
libmnl py-opencensus sentieon-genomics
libmo-unpack py-opencensus-context sepp
libmodbus py-openidc-client seq-gen
libmonitor py-openmc seqan
libmpdclient py-openpmd-validator seqkit
libmypaint py-openpmd-viewer seqprep
libnbc py-openpyxl seqtk
libndp py-openslide-python serenity
libnet py-opentuner serenity-libint
libnetfilter-conntrack py-opppy serf
libnetfilter-cthelper py-opt-einsum serialbox
libnetfilter-cttimeout py-or-tools sessreg
libnetfilter-queue py-ordered-set setserial
libnetworkit py-os-service-types setxkbmap
libnfnetlink py-oset sfcgal
libnfs py-oslo-config sfcio
libnfsidmap py-oslo-i18n sga
libnftnl py-oslo-serialization sgpp
libnids py-oslo-utils shadow
libnl py-osqp shapeit
libnotify py-overpy shapeit4
libnova py-owlrl shapelib
libnrm py-owslib shared-mime-info
libnsl py-oyaml shark
libogg py-pacifica-downloader shc
liboldx py-pacifica-namespace shellcheck
libopts py-pacifica-uploader shengbte
libp11 py-packaging sherpa
libpam py-pager shiro
libpaper py-palettable shocklibs
libpcap py-pamela shoremap
libpciaccess py-panaroo shortbred
libpeas py-pandas shortstack
libpfm4 py-pandocfilters showfont
libpipeline py-param shtools
libplist py-parameterized shuffile
libpmemobj-cpp py-paramiko sickle
libpng py-paramz sicm
libpressio py-parasail siesta
libpressio-adios2 py-parmed sigcpp
libpressio-errorinjector py-parse sigio
libpressio-nvcomp py-parsedatetime signalp
libpressio-opt py-parsimonious signify
libpressio-rmetric py-parsl silo
libpressio-sperr py-parsley simde
libpressio-tools py-parso simgrid
libpressio-tthresh py-partd simmetrix-simmodsuite
libproxy py-particle simple-dftd3
libpsl py-paste simplemoc
libpsml py-pastedeploy simsipm
libpthread-stubs py-pastel simul
libpulsar py-patch-ng simulationio
libqglviewer py-path-py sina
libqrencode py-pathlib2 singularity
libquo py-pathml singularity-eos
libraqm py-pathos singularity-hpc
libraw1394 py-pathspec singularity-legacy
librdkafka py-pathtools singularityce
librelp py-patool sio
libreproc py-patsy sionlib
libressl py-pauvre sirius
libristra py-pbr sjpeg
librmm py-pdbfixer skilion-onedrive
librom py-pdm-pep517 skopeo
librsb py-pdoc3 sl
librsvg py-peachpy slang
librtlsdr py-pebble slate
librttopo py-pem sleef
libsakura py-pennylane slepc
libsamplerate py-pennylane-lightning slf4j
libseccomp py-pep517 slirp4netns
libsecret py-pep8 sloccount
libsharp py-pep8-naming slurm
libshm py-performance slurm-drmaa
libsigcpp py-periodictable smalt
libsignal-protocol-c py-petastorm smartdenovo
libsigsegv py-petname smartmontools
libslirp py-petsc4py smof
libsm py-pexpect smproxy
libsndfile py-phanotate snakemake
libsodium py-phonenumbers snap
libsolv py-phonopy snap-berkeley
libspatialindex py-photutils snap-korf
libspatialite py-phydms snappy
libspiro py-phylophlan snbone
libsplash py-pickle5 sniffles
libspng py-pickleshare snpeff
libssh py-picmistandard snphylo
libssh2 py-picrust2 snptest
libstdcompat py-pid soapdenovo-trans
libsvm py-pika soapdenovo2
libszip py-pillow socat
libtar py-pillow-simd soci
libtasn1 py-pint sofa-c
libtermkey py-pip sollve
libthai py-piper sollya
libtheora py-pipits solr
libtiff py-pispino somatic-sniper
libtirpc py-pkgconfig sombrero
libtlx py-pkginfo sonlib
libtomlc99 py-pkgutil-resolve-name sortmerna
libtommath py-plac sos
libtool py-planar sosflow
libtorrent py-planet source-highlight
libtree py-planetary-computer sowing
libuecc py-platformdirs sox
libunistring py-plotly sp
libunwind py-plotnine spack
libusb py-pluggy spades
libusbmuxd py-ply span-lite
libuser py-pmw spark
libuuid py-pmw-patched sparrow
libuv py-pockets sparse
libuv-julia py-poetry sparsehash
libvdwxc py-poetry-core sparskit
libverto py-poetry-dynamic-versioning sparta
libvips py-poetry-plugin-export spath
libvorbis py-pomegranate spdlog
libvori py-pooch specfem3d-globe
libvpx py-portalocker spectra
libvterm py-portend spectre
libwebp py-poster spectrum-mpi
libwebsockets py-pot speex
libwhich py-pox speexdsp
libwindowswm py-poyo sperr
libwmf py-ppft spfft
libx11 py-pprintpp spglib
libxau py-pre-commit sph2pipe
libxaw py-preshed spherepack
libxaw3d py-pretrainedmodels spindle
libxc py-prettytable spiner
libxcb py-priority spiral-package-fftx
libxcomposite py-profilehooks spiral-package-hcol
libxcrypt py-proglog spiral-package-mpi
libxcursor py-progress spiral-package-simt
libxdamage py-progressbar2 spiral-software
libxdmcp py-progressbar33 spla
libxevie py-projectq spm
libxext py-prometheus-client spot
libxfixes py-promise sprng
libxfont py-prompt-toolkit sqlcipher
libxfont2 py-protobuf sqlite
libxfontcache py-protoc-gen-swagger sqlite-jdbc
libxft py-prov sqlitebrowser
libxi py-prwlock sqoop
libxinerama py-psij-python squashfs
libxkbcommon py-pspamm squashfs-mount
libxkbfile py-psutil squashfuse
libxkbui py-psyclone squid
libxml2 py-psycopg2 sra-tools
libxmu py-ptyprocess sratoolkit
libxp py-pudb srcml
libxpm py-pulp srilm
libxpresent py-pulsar-galaxy-lib sse2neon
libxprintapputil py-pure-eval sshfs
libxprintutil py-pure-sasl sshpass
libxrandr py-puremagic ssht
libxrender py-py ssmtp
libxres py-py-cpuinfo sspace-longread
libxscrnsaver py-py-spy sspace-standard
libxshmfence py-py2bit sst-core
libxslt py-py2neo sst-dumpi
libxsmm py-py4j sst-elements
libxstream py-py6s sst-macro
libxt py-pyaestro sst-transports
libxtrap py-pyamg stacks
libxtst py-pyaml staden-io-lib
libxv py-pyani star
libxvmc py-pyarrow star-ccm-plus
libxxf86dga py-pyasn1 starlight
libxxf86misc py-pyasn1-modules starpu
libxxf86vm py-pyassimp startup-notification
libyaml py-pyautogui stat
libyogrt py-pybedtools stata
libzip py-pybids static-analysis-suite
libzmq py-pybigwig stc
liggghts py-pybind11 stdexec
lighttpd py-pybind11-stubgen steps
ligra py-pybobyqa stinger
likwid py-pybrain storm
linkphase3 py-pybtex stow
linktest py-pybtex-docutils strace
linsys-v py-pycairo stream
linux-headers py-pycares stress
linux-pam py-pycbc stress-ng
lis py-pychecker stressapptest
listres py-pycifrw string-view-lite
lizard py-pycmd stringtie
lksctp-tools py-pycocotools stripack
llvm py-pycodestyle structure
llvm-amdgpu py-pycollada strumpack
llvm-doe py-pycompadre su2
llvm-openmp py-pycortex sublime-text
llvm-openmp-ompt py-pycosat subread
lm-sensors py-pycparser subversion
lmbench py-pycrypto suite-sparse
lmdb py-pycryptodome sumaclust
lmod py-pyct sumo
lndir py-pycuda sundials
lodepng py-pycurl suntans
log4c py-pydantic superchic
log4cplus py-pydantic-tes superlu
log4cpp py-pydap superlu-dist
log4cxx py-pydatalog superlu-mt
logrotate py-pydeprecate supernova
logstash py-pydeps survey
loki py-pydicom sw4
looptools py-pydispatcher sw4lite
lordec py-pydmd swan
lorene py-pydocstyle swap-assembler
lp-solve py-pydoe swarm
lrslib py-pydoe2 swfft
lrzip py-pydot swftools
lsf py-pydot2 swiftsim
lshw py-pydotplus swig
lsof py-pydv swipl
lsscsi py-pyeda symengine
ltp py-pyelftools symlinks
ltr-retriever py-pyem sympol
ltrace py-pyepsg sys-sage
lua py-pyerfa sysbench
lua-bit32 py-pyeventsystem syscalc
lua-bitlib py-pyface sysfsutils
lua-ffi py-pyfaidx sysget
lua-lpeg py-pyfasta sysstat
lua-luafilesystem py-pyfftw systemc
lua-luajit py-pyfiglet systemtap
lua-luajit-openresty py-pyfits sz
lua-luaposix py-pyflakes sz-cpp
lua-mpack py-pyfr sz3
lua-sol2 py-pygdal szauto
lucene py-pygdbmi tabix
luit py-pygelf tajo
lulesh py-pygeos talass
lumpy-sv py-pygetwindow talloc
lustre py-pygit2 tamaas
lvarray py-pygithub tangram
lvm2 py-pyglet tantan
lwgrp py-pygments tar
lwm2 py-pygments-pytest targetp
lwtnn py-pygobject task
lxc py-pygps taskd
lynx py-pygpu taskflow
lz4 py-pygraphviz tasmanian
lzma py-pygresql tassel
lzo py-pygtrie tau
lzop py-pyh5md tauola
m4 py-pyheadtail tbl2asn
macfuse py-pyinstrument tcl
macsio py-pyinstrument-cext tcl-itcl
mad-numdiff py-pyjnius tcl-tcllib
madgraph5amc py-pyjwt tcl-tclxml
madx py-pyke tclap
mafft py-pykml tcoffee
magics py-pykokkos-base tcpdump
magma py-pykwalify tcptrace
mahout py-pylab-sdk tcsh
makedepend py-pylatex tdengine
maker py-pyld tealeaf
mallocmc py-pylev teckit
maloc py-pyliblzma tecplot
man-db py-pylibmagic telegraf
mapnik py-pylikwid tempestremap
mapserver py-pylint templight
mapsplice2 py-pylops templight-tools
maq py-pymatgen tempo
margo py-pymatreader tengine
mariadb py-pymc3 tensorflow-serving-client
mariadb-c-client py-pymdown-extensions tensorpipe
mark py-pymeeus termcap
masa py-pyminifier tesseract
mash py-pymol testdfsio
masurca py-pymongo testu01
mathematica py-pymoo tetgen
matio py-pymorph tethex
matlab py-pympler texinfo
maven py-pymsgbox texlive
maverick py-pymumps texstudio
mawk py-pymysql textparser
mbdyn py-pynacl tfel
mbedtls py-pynio the-platinum-searcher
mc py-pynisher the-silver-searcher
mcl py-pynn thepeg
mcpp py-pynndescent thermo4pfm
mctc-lib py-pynvim thornado-mini
mcutils py-pynvml thrift
mdsplus py-pyodbc thrust
mdtest py-pyomo tidy-html5
med py-pyopencl tig
meep py-pyopenssl time
mefit py-pypar timedatex
megadock py-pyparsing timemory
megahit py-pypdf2 tini
melissa py-pypeflow tinker
memaxes py-pypeg2 tinygltf
memcached py-pyperclip tinyobjloader
meme py-pyperf tinyxml
memkind py-pypinyin tinyxml2
memsurfer py-pyprecice tioga
memtester py-pyprof2html tippecanoe
meraculous py-pyproj tiptop
mercurial py-pyproject-metadata tix
mercury py-pypulse tixi
mesa py-pyqi tk
mesa-demos py-pyqt-builder tkrzw
mesa-glu py-pyqt4 tl-expected
mesa18 py-pyqt5 tldd
meshkit py-pyqt5-sip tmalign
meshtool py-pyquaternion tmhmm
meson py-pyrect tmux
mesquite py-pyrevolve tomcat
metabat py-pyrfr toml-f
metaeuk py-pyro-api toml11
metall py-pyro-ppl tophat
metaphysicl py-pyro4 torque
methyldackel py-pyrosar totalview
metis py-pyrr tower-agent
metkit py-pyrsistent tower-cli
mfem py-pysam tpm2-tss
mg py-pyscaf tracer
mgard py-pyscf tracy
mgardx py-pyscipopt tracy-client
mgcfd-op2 py-pyscreeze tramonto
mgis py-pyserial transabyss
microbiomeutil py-pyshacl transdecoder
micromamba py-pyshp transposome
microsocks py-pyside transrate
migraphx py-pyside2 transset
migrate py-pysimdjson trapproto
mii py-pysmartdl tree
millepede py-pysocks tree-sitter
mimalloc py-pysolar treelite
minc-toolkit py-pyspark treesub
minced py-pyspellchecker trexio
mindthegap py-pyspoa trf
miniaero py-pysqlite3 triangle
miniamr py-pystac trident
miniapp-ascent py-pystac-client trilinos
miniasm py-pystache trilinos-catalyst-ioss-adapter
miniconda2 py-pystan trimal
miniconda3 py-pysurfer trimgalore
minife py-pytailf trimmomatic
miniforge3 py-pytaridx trinity
minigan py-pytecplot trinotate
minighost py-pytesseract trnascan-se
minigmg py-pytest truchas
minimap2 py-pytest-arraydiff tskit
minimd py-pytest-asyncio tulip
minio py-pytest-benchmark turbine
miniqmc py-pytest-cache turbomole
minisign py-pytest-check-links turnserver
minismac2d py-pytest-cov twm
minitri py-pytest-cpp tycho2
minivite py-pytest-datadir typhon
minixyce py-pytest-doctestplus typhonio
minizip py-pytest-fail-slow uchardet
minuit py-pytest-flake8 ucx
miopen-hip py-pytest-flakes udunits
miopen-opencl py-pytest-forked ufo-core
miopen-tensile py-pytest-html ufo-filters
miopengemm py-pytest-httpbin ufs-utils
mira py-pytest-isort ufs-weather-model
miranda py-pytest-metadata uftrace
mirdeep2 py-pytest-mock umap
mitofates py-pytest-mypy umesimd
mitos py-pytest-openfiles umoci
mivisionx py-pytest-parallel umpire
mixcr py-pytest-pep8 unblur
mkfontdir py-pytest-qt uncrustify
mkfontscale py-pytest-random-order unibilium
mlhka py-pytest-runner unifdef
mlirmiopen py-pytest-timeout unifyfs
mlocate py-pytest-workflow unigen
mlperf-deepcam py-pytest-xdist unison
mlst py-python-benedict units
mmg py-python-bioformats unittest-cpp
mmseqs2 py-python-box universal-ctags
mmv py-python-certifi-win32 unixodbc
moab py-python-constraint unqlite
mochi-margo py-python-crfsuite unrar
mochi-thallium py-python-daemon unuran
model-traits py-python-dateutil unzip
modeltest-ng py-python-docs-theme upcxx
modern-wheel py-python-dotenv upp
modylas py-python-editor uqtk
mokutil py-python-engineio uriparser
molcas py-python-fmask usbutils
mold py-python-fsutil usearch
molden py-python-gitlab userspace-rcu
mongo-c-driver py-python-igraph utf8cpp
mongo-cxx-driver py-python-javabridge utf8proc
mongodb-async-driver py-python-jenkins util-linux
mono py-python-jose util-linux-uuid
montage py-python-json-logger util-macros
moosefs py-python-keystoneclient uvw
moreutils py-python-ldap vacuumms
mosh py-python-levenshtein vala
mosquitto py-python-logstash valgrind
mothur py-python-louvain vampirtrace
motif py-python-lsp-jsonrpc vardictjava
motioncor2 py-python-lsp-server variorum
mount-point-attributes py-python-lzo varnish-cache
mpark-variant py-python-magic varscan
mpas-model py-python-mapnik vasp
mpb py-python-markdown-math vbfnlo
mpc py-python-memcached vc
mpdecimal py-python-multipart vcftools
mpe2 py-python-oauth2 vcsh
mpest py-python-picard vdt
mpfi py-python-ptrace veccore
mpfr py-python-rapidjson vecgeom
mpi-bash py-python-slugify veclibfort
mpi-serial py-python-socketio vecmem
mpibind py-python-sotools vectorclass-version2
mpich py-python-subunit vegas2
mpifileutils py-python-swiftclient veloc
mpilander py-python-utils velvet
mpileaks py-python-xlib velvetoptimiser
mpip py-python-xmp-toolkit verilator
mpir py-python3-openid verrou
mpitrampoline py-python3-xlib vesta
mpiwrapper py-pythonqwt vgm
mpix-launch-swift py-pythonsollya videoproto
mpl py-pythran viennarna
mpt py-pytimeparse viewres
mptensor py-pytoml vifi
mrbayes py-pytools vigra
mrbench py-pytorch-gradual-warmup-lr vim
mrchem py-pytorch-lightning virtest
mrcpp py-pytorch-sphinx-theme virtualgl
mrnet py-pyts virtuoso
mrtrix3 py-pytweening visit
mscgen py-pytz visit-cgns
msgpack-c py-pyudev visit-ffp
mshadow py-pyugrid visit-mfem
msmc py-pyupgrade visit-silo
msmc2 py-pyusb visit-unv
msmpi py-pyutilib vite
mstk py-pyuwsgi vizglow
mt-metis py-pyvcf vmatch
mujoco py-pyvista vmc
multitail py-pyvistaqt vmd
multitime py-pyvolve volk
multiverso py-pywavelets voropp
mumax py-pywcs votca
mummer py-pyworld votca-csg
mummer4 py-pyyaml votca-csg-tutorials
mumps py-pyyaml-env-tag votca-csgapps
munge py-pyzmq votca-ctp
muparser py-qiskit-aer votca-tools
muparserx py-qiskit-nature votca-xtp
muscle py-qiskit-terra vpfft
muse py-qmtest vpic
music py-qpth vsearch
musl py-qrcode vsftpd
must py-qsymm vt
muster py-qtawesome vtable-dumper
mutationpp py-qtconsole vtk
mvapich py-qtpy vtk-h
mvapich2 py-quantities vtk-m
mvapich2-gdr py-quantum-blackbird vvtest
mvapich2x py-quantum-xir w3emc
mxm py-quart w3m
mxml py-quast w3nco
mxnet py-quaternionic wannier90
mypaint-brushes py-qudida warpx
mysql py-queryablelist watch
mysqlpp py-questionary wayland
n2p2 py-qutip wayland-protocols
nacos py-qutip-qip wcs
nag py-radiant-mlhub wcslib
nalu py-radical-entk webbench
nalu-wind py-radical-gtod weechat
namd py-radical-pilot weighttp
nano py-radical-saga wget
nanoflann py-radical-utils wgl
nanomsg py-ranger-fm wgrib2
nanopb py-rapidfuzz wgsim
nasm py-rarfile which
nauty py-rasterio whip
navi py-rasterstats whizard
nbdkit py-ratelim wi4mpi
ncbi-magicblast py-ratelimiter win-sdk
ncbi-rmblastn py-raven win-wdk
ncbi-toolkit py-ray winbison
ncbi-vdb py-rbtools windowswmproto
nccl py-rdflib wiredtiger
nccl-tests py-rdflib-jsonld wireshark
nccmp py-rdt wonton
ncdu py-readme-renderer wordnet
ncftp py-recommonmark wps
ncio py-redis wrf
ncl py-refgenconf wrf-io
nco py-refgenie wrk
ncompress py-regex wsmancli
ncurses py-reindent wt
ncview py-reportlab wtdbg2
ndiff py-repoze-lru wxparaver
ndzip py-reproject wxpropgrid
neartree py-requests wxwidgets
nek5000 py-requests-cache x11perf
nekbone py-requests-ftp x264
nekcem py-requests-futures xabclib
neko py-requests-mock xalan-c
nekrs py-requests-ntlm xapian-core
nektar py-requests-oauthlib xauth
nektools py-requests-toolbelt xbacklight
nemsio py-requests-unixsocket xbiff
nemsiogfs py-reretry xbitmaps
neo4j py-resampy xbraid
neovim py-responses xcalc
nest py-resultsfile xcb-demo
net-snmp py-retry xcb-proto
netcdf-c py-retry-decorator xcb-util
netcdf-cxx py-retrying xcb-util-cursor
netcdf-cxx4 py-retworkx xcb-util-errors
netcdf-fortran py-rfc3986 xcb-util-image
netdata py-rich xcb-util-keysyms
netgauge py-rich-click xcb-util-renderutil
netgen py-rios xcb-util-wm
netkit-ftp py-rioxarray xcb-util-xrm
netlib-lapack py-rise xcfun
netlib-scalapack py-river xclip
netlib-xblas py-rmm xclipboard
netpbm py-rnc2rng xclock
netperf py-robotframework xcmiscproto
nettle py-rocrate xcmsdb
neuron py-rope xcompmgr
neve py-rosdep xconsole
newt py-rosdistro xcursor-themes
nextflow py-rosinstall xcursorgen
nf-core-tools py-rosinstall-generator xdbedizzy
nf-tower-agent py-rospkg xdelta
nf-tower-cli py-routes xditview
nfft py-rply xdm
nfs-ganesha py-rpy2 xdmf3
nfs-utils py-rq xdotool
nghttp2 py-rsa xdpyinfo
nginx py-rsatoolbox xdriinfo
ngmerge py-rseqc xedit
ngmlr py-rst2pdf xerces-c
ngspice py-rtree xeus
nicstat py-ruamel-ordereddict xev
nim py-ruamel-yaml xextproto
ninja py-ruamel-yaml-clib xeyes
ninja-fortran py-rx xf86bigfontproto
nix py-s3cmd xf86dga
njet py-s3fs xf86dgaproto
nlcglib py-s3transfer xf86driproto
nlohmann-json py-sacremoses xf86miscproto
nlohmann-json-schema-validator py-saga-python xf86rushproto
nlopt py-salib xf86vidmodeproto
nmap py-sanic xfd
nn-c py-scandir xfindproxy
nnpack py-scanpy xfontsel
nnvm py-schema xforms
node-js py-schema-salad xfs
notmuch py-scientificpython xfsdump
npb py-scikit-build xfsinfo
npm py-scikit-fmm xfsprogs
npth py-scikit-fuzzy xfwp
nrm py-scikit-image xgamma
ns-3-dev py-scikit-learn xgboost
nseg py-scikit-learn-extra xgc
nsimd py-scikit-optimize xhmm
nspr py-scine-chemoton xhost
nss py-scine-puffin xineramaproto
ntirpc py-scinum xinit
ntl py-scipy xinput
ntpoly py-scooby xios
numactl py-scoop xkbcomp
numamma py-scp xkbdata
numap py-scs xkbevd
numdiff py-sdmetrics xkbprint
nut py-sdv xkbutils
nvcomp py-seaborn xkeyboard-config
nvdimmsim py-secretstorage xkill
nvhpc py-segmentation-models-pytorch xlc
nvptx-tools py-selenium xlf
nvshmem py-semantic-version xload
nvtop py-semver xlogo
nwchem py-send2trash xlsatoms
nyancat py-sentencepiece xlsclients
ocaml py-sentry-sdk xlsfonts
ocamlbuild py-seqeval xmag
occa py-seriate xman
oce py-serpent xmessage
oci-systemd-hook py-session-info xmh
ocl-icd py-setproctitle xmlf90
oclgrind py-setupmeta xmlrpc-c
oclint py-setuptools xmlto
oclock py-setuptools-cpp xmodmap
octa py-setuptools-git xmore
octave py-setuptools-rust xnnpack
octave-arduino py-setuptools-scm xorg-cf-files
octave-control py-setuptools-scm-git-archive xorg-docs
octave-gsl py-sfepy xorg-gtest
octave-instrctl py-sgp4 xorg-server
octave-io py-sh xorg-sgml-doctools
octave-optim py-shapely xphelloworld
octave-quaternion py-shared-memory38 xplor-nih
octave-signal py-shellescape xplsprinters
octave-splines py-shellingham xpmem
octave-statistics py-shiboken xpr
octave-struct py-shiboken2 xprehashprinterlist
octave-symbolic py-shortbred xprop
octopus py-shortuuid xproperty
odc py-shroud xproto
of-catalyst py-shtab xproxymanagementprotocol
of-precice py-sierrapy xqilla
ome-common-cpp py-simpleeval xrandr
ome-files-cpp py-simplegeneric xrdb
ome-model py-simplejson xrdcl-record
omega-h py-simplekml xrefresh
omnitrace py-sip xrootd
ompss py-six xrx
ompss-2 py-skl2onnx xsbench
ompt-openmp py-slepc4py xscope
oneapi-igc py-slurm-pipeline xsd
oneapi-level-zero py-smac xsdk
onednn py-smart-open xsdk-examples
oniguruma py-smartypants xset
onnx py-smmap xsetmode
ont-guppy py-snappy xsetpointer
oommf py-sncosmo xsetroot
op2-dsl py-sniffio xsimd
opa-psm2 py-snowballstemmer xsm
opam py-snuggs xstdcmap
opari2 py-sobol-seq xtb
open-iscsi py-social-auth-core xtensor
open-isns py-sonlib xtensor-blas
open3d py-sortedcollections xtensor-python
openal-soft py-sortedcontainers xterm
openbabel py-soundfile xtl
openblas py-soupsieve xtrans
opencarp py-spacy xtrap
opencascade py-spacy-models-en-core-web-sm xts
opencl-c-headers py-spacy-models-en-vectors-web-lg xvidtune
opencl-clhpp py-sparse xvinfo
opencl-headers py-spatialist xwd
opencoarrays py-spatialite xwidgets
opencv py-spdlog xwininfo
opendatadetector py-spectra xwud
opendx py-spectral xxd-standalone
openexr py-speech-recognition xxhash
openfast py-spefile xyce
openfdtd py-spgl1 xz
openfoam py-spglib yafyaml
openfoam-org py-spherical yajl
openfst py-sphinx yaksa
opengl py-sphinx-argparse yambo
openglu py-sphinx-autodoc-typehints yaml-cpp
openimageio py-sphinx-bootstrap-theme yara
openipmi py-sphinx-copybutton yarn
openjdk py-sphinx-design yasm
openjpeg py-sphinx-gallery ycruncher
openkim-models py-sphinx-immaterial ycsb
openldap py-sphinx-multiversion yoda
openlibm py-sphinx-rtd-theme yorick
openloops py-sphinx-tabs z-checker
openmc py-sphinxautomodapi z3
openmm py-sphinxcontrib-applehelp zabbix
openmolcas py-sphinxcontrib-bibtex zfp
openmpi py-sphinxcontrib-devhelp zfs
openmx py-sphinxcontrib-htmlhelp zig
opennurbs py-sphinxcontrib-issuetracker zip
openpa py-sphinxcontrib-jsmath zipkin
openpbs py-sphinxcontrib-mermaid zlib
openpmd-api py-sphinxcontrib-napoleon zlib-ng
openrasmol py-sphinxcontrib-programoutput zoltan
openresty py-sphinxcontrib-qthelp zookeeper
openscenegraph py-sphinxcontrib-serializinghtml zookeeper-benchmark
openslide py-sphinxcontrib-trio zopfli
openslp py-sphinxcontrib-websupport zpares
openssh py-sphobjinv zsh
openssl py-spyder zstd
openstf py-spykeutils zstr
opensubdiv py-spython zziplib
opentsdb py-sqlalchemy None
openturns py-sqlalchemy-migrate None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

7zip

Homepage:
Spack package:
Versions:
21.07
Description:
7-Zip is a file archiver for Windows

abacus

Homepage:
Spack package:
Versions:
develop, 2.2.3, 2.2.2, 2.2.1, 2.2.0
Build Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Link Dependencies:
elpa, cereal, libxc, fftw, mpi, mkl
Run Dependencies:
mpi
Description:
ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open- source computer code package aiming for large-scale electronic-structure simulations from first principles

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.6.1, 9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20220623.0, 20211102.0, 20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake, ninja
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, ninja, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Build Dependencies:
gnuconfig
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

acfl

Homepage:
Spack package:
Versions:
22.1, 22.0.2, 22.0.1
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 22.0.0, 21.1.0, 21.0.0, 20.3.0, 20.2.0, 20.1.0, 20.0.0, 19.11.0, 19.10.0, 19.9.0, 19.8.0, 19.7.0, 19.6.0, 19.5.0, 19.4.0, 19.3.0, 19.2.0, 19.1.0, 19.0.0, 18.0.0, 17.1.0, 17.0.0, 16.0.0, 15.1.0, 15.0.1, 15.0.0, 14.1.0, 14.0.0, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, ninja, acts-dd4hep, actsvg, autodiff, boost, dd4hep, edm4hep, eigen, geant4, gperftools, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnxruntime, py-pybind11, py-pytest, root, sycl, vecmem
Link Dependencies:
cuda, acts-dd4hep, actsvg, autodiff, boost, dd4hep, edm4hep, eigen, geant4, gperftools, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, python, py-onnxruntime, py-pybind11, py-pytest, root, sycl, vecmem
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

acts-dd4hep

Homepage:
Spack package:
Versions:
1.0.1, 1.0.0
Build Dependencies:
cmake, ninja, dd4hep
Link Dependencies:
dd4hep
Description:
Glue library to connect Acts to DD4hep

actsvg

Homepage:
Spack package:
Versions:
0.4.26
Build Dependencies:
cmake, ninja, boost, googletest
Link Dependencies:
boost, googletest
Test Dependencies:
boost
Description:
An SVG based C++17 plotting library for ACTS detectors and surfaces.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, ninja, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.2, 0.2.1, 0.1.1
Build Dependencies:
cmake, ninja, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.8.3, 2.8.2, 2.8.1, 2.8.0, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cuda, cmake, ninja, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, libpressio, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
cuda, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, libpressio, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
gnuconfig, bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
gnuconfig, automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gnuconfig, gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Build Dependencies:
gnuconfig
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agile

Homepage:
Spack package:
Versions:
1.5.1
Build Dependencies:
gnuconfig, hepmc, boost
Link Dependencies:
hepmc, boost
Description:
AGILe is A Generator Interface Library (& executable), i.e. a uniform object oriented C++ interface for a variety of Fortran-based Monte Carlo event generators..

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, ninja, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, ninja, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, ninja, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
gnuconfig
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.7.2, 2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, ninja, boost
Link Dependencies:
cuda, cmake, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alpgen

Homepage:
Spack package:
Versions:
2.1.4
Build Dependencies:
cmake, ninja
Description:
A collection of codes for the generation of multi-parton processes in hadronic collisions.

alquimia

Homepage:
Spack package:
Versions:
develop, 1.0.10, 1.0.9, xsdk-0.6.0, xsdk-0.5.0
Build Dependencies:
cmake, ninja, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Build Dependencies:
gnuconfig
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0-lbann, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, mpi, nccl, hwloc, cub, hipcub, rccl, aws-ofi-rccl, aws-ofi-nccl
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub, rccl, aws-ofi-rccl, aws-ofi-nccl
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, parallel-netcdf, tcsh, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, parallel-netcdf, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amd-aocl

Homepage:
Spack package:
Versions:
4.0, 3.2, 3.1, 3.0, 2.2
Build Dependencies:
amdblis, amdfftw, amdlibflame, amdlibm, amdscalapack, aocl-sparse
Link Dependencies:
amdblis, amdfftw, amdlibflame, amdlibm, amdscalapack, aocl-sparse
Description:
AMD Optimizing CPU Libraries (AOCL) - AOCL is a set of numerical libraries tuned specifically for AMD EPYC processor family. They have a simple interface to take advantage of the latest hardware innovations. The tuned implementations of industry standard math libraries enable fast development of scientific and high performance computing projects LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/aocl-eula.html https://www.amd.com/en/developer/aocl/aocl-4-0-eula.html

amdblis

Homepage:
Spack package:
Versions:
4.0, 3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-BLIS license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/blis/blis-4-0-eula.html https://www.amd.com/en/developer/aocl/blis/blis-eula.html

amdfftw

Homepage:
Spack package:
Versions:
4.0, 3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-FFTW license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/fftw/fftw-libraries-4-0-eula.html https://www.amd.com/en/developer/aocl/fftw/fftw-libraries-eula.html

amdlibflame

Homepage:
Spack package:
Versions:
4.0, 3.2, 3.1, 3.0.1, 3.0, 2.2
Build Dependencies:
gnuconfig, blas, python
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-libFLAME license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/blis/libflame-4-0-eula.html https://www.amd.com/en/developer/aocl/blis/libflame-eula.html

amdlibm

Homepage:
Spack package:
Versions:
4.0, 3.2, 3.1, 3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-FFTW license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/libm/libm-4-0-eula.html https://www.amd.com/en/developer/aocl/libm/libm-eula.html

amdscalapack

Homepage:
Spack package:
Versions:
4.0, 3.2, 3.1, 3.0, 2.2
Build Dependencies:
cmake, ninja, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-ScaLAPACK license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/scalapack/scalapack- libraries-4-0-eula.html https://www.amd.com/en/developer/aocl/scalapack/scalapack-libraries- eula.html

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, ninja, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.2.0, 0.1.0
Build Dependencies:
gnuconfig, numactl, cuda, hip, oneapi-level-zero, hwloc, ocl-icd, m4, autoconf, automake, libtool, pkgconf, git
Link Dependencies:
numactl, cuda, hip, oneapi-level-zero, hwloc, ocl-icd
Description:
AML is a memory management library designed to ease the use of complex memory topologies and complex data layout optimizations for high- performance computing applications.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, ninja, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20220525, 20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

ampt

Homepage:
Spack package:
Versions:
2.26-t9b_atlas, 2.26-t9
Description:
A Multi-Phase Transport (AMPT) model is a Monte Carlo transport model for nuclear collisions at relativistic energies.

amqp-cpp

Homepage:
Spack package:
Versions:
4.3.19
Build Dependencies:
cmake, ninja, openssl
Link Dependencies:
openssl
Run Dependencies:
openssl
Description:
AMQP-CPP is a C++ library for communicating with a RabbitMQ message broker. The library can be used to parse incoming data from, and generate frames to, a RabbitMQ server.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, hypre, masa, ascent, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, hypre, masa, ascent, mpi, netcdf-c, openfast, py-matplotlib, py-pandas
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 23.01, 22.12, 22.11, 22.10, 22.09, 22.08, 22.07, 22.06, 22.05, 22.04, 22.03, 22.02, 22.01, 21.12, 21.11, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, mpi, sundials, python, hdf5, rocrand, rocprim, intel-oneapi-compilers, intel-oneapi-mkl
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc, intel-oneapi-mkl
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrfinder

Homepage:
Spack package:
Versions:
3.10.42, 3.10.30, 3.10.24
Build Dependencies:
blast-plus, hmmer, curl
Link Dependencies:
blast-plus, hmmer, curl
Description:
NCBI AMRFinderPlus: This software and the accompanying database identify acquired antimicrobial resistance genes in bacterial protein and/or assembled nucleotide sequences as well as known resistance-associated point mutations for several taxa. With AMRFinderPlus we added select members of additional classes of genes such as virulence factors, biocide, heat, acid, and metal resistance genes.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2022.10, 2022.05, 2021.11, 2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.14, 0.10
Build Dependencies:
gnuconfig, pkgconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.935, 0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

anicalculator

Homepage:
Spack package:
Versions:
1
Run Dependencies:
perl
Description:
This tool will calculate the bidirectional average nucleotide identity (gANI) and Alignment Fraction (AF) between two genomes. Note: A manual download is required for ANIcalculator. Spack will search your current directory for the download file. Alternatively, add this file to a mirror so that Spack can find it. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, ninja, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
gnuconfig, python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
20220205, 2.4.0, 2.3.5, 2.2.0
Build Dependencies:
cmake, ninja
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

any2fasta

Homepage:
Spack package:
Versions:
0.4.2, 0.2.3, 0.1.2
Build Dependencies:
perl
Run Dependencies:
perl
Description:
any2fasta: Convert various sequence formats to FASTA

aocc

Homepage:
Spack package:
Versions:
4.0.0, 3.2.0, 3.1.0, 3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Installation requires acceptance of the EULA by setting the +license-agreed variant. https://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
4.0, 3.2, 3.1, 3.0, 2.2
Build Dependencies:
cmake, ninja, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats. LICENSING INFORMATION: By downloading, installing and using this software, you agree to the terms and conditions of the AMD AOCL-Sparse license agreement. You may obtain a copy of this license agreement from https://www.amd.com/en/developer/aocl/sparse/sparse- libraries-4-0-eula.html https://www.amd.com/en/developer/aocl/sparse/sparse-libraries-eula.html

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, ninja, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, ninja, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0
Build Dependencies:
cmake, python, py-setuptools, gl, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
gl, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.4, 0.0.3, 0.0.2, 0.0.1
Build Dependencies:
cmake, mpi, llvm-openmp
Link Dependencies:
mpi, llvm-openmp
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
3.0.2, 2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, ninja, zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Link Dependencies:
zlib, binutils, gettext, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
gnuconfig, swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apktool

Homepage:
Spack package:
Versions:
2.6.1, 2.6.0
Build Dependencies:
java
Run Dependencies:
java
Description:
A tool for reverse engineering 3rd party, closed, binary Android apps.

apple-gl

Homepage:
Spack package:
Versions:
4.1.0
Description:
Shim package for the core OpenGL library from Apple

apple-glu

Homepage:
    No homepage
Spack package:
Versions:
1.3.0
Description:
Shim package for Apple implementation of OpenGL Utility Libray (GLU)

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apptainer

Homepage:
Spack package:
Versions:
main, 1.1.5, 1.1.4, 1.1.3, 1.0.2
Build Dependencies:
pkgconfig, conmon, squashfs, go, uuid, libgpg-error, libseccomp, git, cryptsetup
Link Dependencies:
go, uuid, libgpg-error, libseccomp, git
Run Dependencies:
conmon, squashfs, shadow, cryptsetup
Description:
Apptainer is an open source container platform designed to be simple, fast, and secure. Many container platforms are available, but Apptainer is designed for ease-of-use on shared systems and in high performance computing (HPC) environments. Needs post-install chmod/chown steps to enable full functionality. See package definition or `spack-build- out.txt` build log for details, e.g.:: tail -15 $(spack location -i apptainer)/.spack/spack-build-out.txt

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Build Dependencies:
gnuconfig
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.41, 1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.8.1, 0.8, 0.7, 0.6, 0.5.2
Build Dependencies:
cuda, cmake, ninja, fmt, pugixml, nlohmann-json, random123, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, fmt, pugixml, nlohmann-json, random123, mpi
Run Dependencies:
py-mpi4py, python, py-numpy
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.3, 1.2, 1.1, 1.0, 0.9-beta
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, mpi, rocthrust, kokkos, trilinos
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, rocthrust, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

arc

Homepage:
Spack package:
Versions:
master, 2021-12-01
Build Dependencies:
cmake, ninja, libpressio
Link Dependencies:
libpressio
Description:
ARC is an automatic resiliency library designed to provide security to lossy compressed data or other uint8_t data arrays forked from: https://github.com/FTHPC/ARC to support Spack after developer left grad school

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, ninja, llvm, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Build Dependencies:
gnuconfig
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake, ninja
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Build Dependencies:
gnuconfig
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.36.0, 1.35.0, 1.34.0
Build Dependencies:
gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm-forge

Homepage:
Spack package:
Versions:
22.1.3, 22.1.2, 22.1.1, 22.1, 22.0.4, 22.0.3, 22.0.2, 22.0.1, 22.0, 21.1.3, 21.1.2, 21.1.1, 21.1, 21.0.3, 21.0.2, 21.0.1, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, ninja, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

armpl-gcc

Homepage:
Spack package:
Versions:
22.1_gcc-11.2, 22.1_gcc-10.2, 22.1_gcc-9.3, 22.1_gcc-8.2, 22.1_gcc-7.5, 22.0.2_gcc-11.2, 22.0.2_gcc-10.2, 22.0.2_gcc-9.3, 22.0.2_gcc-8.2, 22.0.2_gcc-7.5, 22.0.1_gcc-11.2, 22.0.1_gcc-10.2, 22.0.1_gcc-9.3, 22.0.1_gcc-8.2, 22.0.1_gcc-7.5
Description:
Arm Performance Libraries provides optimized standard core math libraries for high-performance computing applications on Arm processors.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
gnuconfig, cmake, ninja, blas, lapack, mpi, automake, autoconf, libtool, pkgconfig
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.8.1, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, ninja, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
9.0.0, 8.0.0, 7.0.0, 4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, ninja, boost, flatbuffers, llvm, lz4, openssl, orc, protobuf, py-numpy, python, rapidjson, re2, snappy, thrift, utf8proc, xsimd, zlib, zstd
Link Dependencies:
cuda, boost, flatbuffers, lz4, openssl, orc, protobuf, py-numpy, python, rapidjson, re2, snappy, thrift, utf8proc, xsimd, zlib, zstd
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, ninja, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.8.0, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, ninja, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, vtk-m, mfem, fides, dray, adios2
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10
Build Dependencies:
gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python, autoconf, automake, libtool
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
Build Dependencies:
gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, ninja, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.21.0, 1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2, 1.18.1, 1.18.0, 1.17.0, 1.16.1, 1.16.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, ninja, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, ninja, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Build Dependencies:
gnuconfig
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.2.4, 5.2.3, 5.2.2, 5.2.1, 5.1.4, 5.1.3, 5.0.1, 4.0.1
Build Dependencies:
cmake, ninja, pkgconfig, zlib
Link Dependencies:
zlib
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.7.1, 5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
5.3.3, 5.3.0, 5.2.3, 5.2.1, 5.2.0, 5.1.3, 5.1.0, 5.0.2, 5.0.0, 4.5.2, 4.5.0, 4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, ninja, rsync
Link Dependencies:
rsync, comgr, hsa-rocr-dev, elf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.2.0.1, 4.2.0.0, 4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
gnuconfig, lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Build Dependencies:
gnuconfig
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, ninja, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, ncurses, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59
Build Dependencies:
gnuconfig, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2022.02.11, 2019.01.06
Build Dependencies:
gnuconfig
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodiff

Homepage:
Spack package:
Versions:
0.6.4, 0.5.13
Build Dependencies:
cmake, ninja, eigen, py-pybind11
Link Dependencies:
eigen
Run Dependencies:
py-pybind11
Description:
autodiff is automatic differentiation made easier for C++.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
gnuconfig, pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, ninja, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.5, 1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
gnuconfig, autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-ofi-nccl

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, libfabric, cuda, nccl, mpi, autoconf, automake, libtool
Link Dependencies:
libfabric, cuda, nccl, mpi
Description:
AWS OFI NCCL is a plug-in which enables EC2 developers to use libfabric as a network provider while running NVIDIA's NCCL based applications.

aws-ofi-rccl

Homepage:
Spack package:
Versions:
master, cxi
Build Dependencies:
gnuconfig, libfabric, hip, rccl, mpi, autoconf, automake, libtool
Link Dependencies:
libfabric, hip, rccl, mpi
Description:
AWS OFI RCCL is a plug-in which enables EC2 developers to use libfabric as a network provider while running AMD's RCCL based applications.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.9, 2.11.8, 2.11.7, 2.11.6, 2.11.5, 2.11.4, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-pip, py-wheel, py-future, py-ipaddress, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools
Run Dependencies:
python, py-future, py-ipaddress, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

aws-sdk-cpp

Homepage:
Spack package:
Versions:
1.10.32, 1.9.247
Build Dependencies:
cmake, ninja, zlib, curl
Link Dependencies:
zlib, curl
Description:
AWS SDK for C++. The AWS SDK for C++ provides a modern C++ (version C++ 11 or later) interface for Amazon Web Services (AWS). It is meant to be performant and fully functioning with low- and high-level SDKs, while minimizing dependencies and providing platform portability (Windows, OSX, Linux, and mobile).

awscli

Homepage:
Spack package:
Versions:
1.27.56, 1.16.308, 1.16.179
Build Dependencies:
python, py-pip, py-wheel, py-setuptools, py-botocore, py-colorama, py-docutils, py-pyyaml, py-rsa, py-s3transfer
Run Dependencies:
python, py-botocore, py-colorama, py-docutils, py-pyyaml, py-rsa, py-s3transfer
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.17.10, 2.16.1
Build Dependencies:
gnuconfig, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.7.1, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, ninja, kvtree
Link Dependencies:
kvtree, zlib
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, blt, mpi, conduit, hdf5, lua, scr, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, conduit, hdf5, lua, scr, umpire, raja, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.1.0, 1.0.1, 1.0.0
Build Dependencies:
cmake, ninja, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
gnuconfig, glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

babl

Homepage:
Spack package:
Versions:
0.1.98, 0.1.96, 0.1.94, 0.1.92, 0.1.90
Build Dependencies:
meson, ninja, cmake, lcms, gobject-introspection
Link Dependencies:
lcms, gobject-introspection
Description:
babl is pixel encoding and color space conversion engine in C. It allows converting between different methods of storing pixels known as pixel formats that have with different bitdepths and other data representations, color models, color spaces and component permutations.

bacio

Homepage:
Spack package:
Versions:
2.5.0, 2.4.1
Build Dependencies:
cmake, ninja
Description:
The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake, ninja
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.2, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake, ninja, jsoncpp
Link Dependencies:
zlib, jsoncpp
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.15, 1.0.13
Build Dependencies:
zlib, git
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gnuconfig, gmp, ntl, llvm, libyaml
Link Dependencies:
gmp, ntl, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.2, 5.1, 5.0, 4.4, 4.3
Build Dependencies:
gnuconfig, ncurses, readline, iconv, gettext
Link Dependencies:
ncurses, readline, iconv, gettext
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
gnuconfig, automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.21.0, 0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batchedblas

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
blas
Link Dependencies:
blas
Description:
Batched BLAS is one of the new approaches for a task-based BLAS invocation, and it is defined as a new interface that allows users to execute multiple independent BLAS operations as a single subroutine call

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

baurmc

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig
Description:
Baur's Monte Carlo package for simulating W+ gamma production at hadron colliders provides full electroweak calculation upto O(alpha) and contains higher order QCD corrections as well.

bazel

Homepage:
Spack package:
Versions:
5.2.0, 5.1.1, 5.1.0, 5.0.0, 4.2.2, 4.2.1, 4.2.0, 4.1.0, 4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.0, 0.1.4, 0.1.1
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
gnuconfig, ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.16, 1.15.1, 1.14, 1.13, 1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gnuconfig, gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdsim

Homepage:
Spack package:
Versions:
develop, 1.6.0
Build Dependencies:
cmake, ninja, geant4, root, clhep, flex, bison
Link Dependencies:
cmake, geant4, root, clhep, flex, bison
Description:
Beam Delivery Simulation (BDSIM) is a C++ program that utilises the Geant4 toolkit to simulate both the transport of particles in an accelerator and their interaction with the accelerator material

bdw-gc

Homepage:
Spack package:
Versions:
8.2.2, 8.0.6, 8.0.0, 7.6.0, 7.4.4
Build Dependencies:
gnuconfig, libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.4, 5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
3.0.20, 3.0.19, 3.0.18, 3.0.0, 2.2.0, 2.0.4
Build Dependencies:
cmake, ninja, pkgconfig, fmt, grpc, nlohmann-json, spdlog, python
Link Dependencies:
pkgconfig, fmt, grpc, nlohmann-json, spdlog
Test Dependencies:
googletest
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
main, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, ninja
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Build Dependencies:
gnuconfig
Description:
Oracle Berkeley DB

berkeleygw

Homepage:
Spack package:
Versions:
3.0.1, 3.0, 2.1
Build Dependencies:
blas, lapack, mpi, scalapack, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py, fftw, amdfftw, openblas, amdblis
Link Dependencies:
blas, lapack, mpi, scalapack, hdf5, elpa, fftw-api, fftw, amdfftw, openblas, amdblis
Run Dependencies:
python, py-numpy, py-setuptools, py-h5py
Test Dependencies:
perl
Description:
BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
gnuconfig, flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigdft-atlab

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0
Build Dependencies:
gnuconfig, mpi, openbabel, bigdft-futile
Link Dependencies:
mpi, openbabel, bigdft-futile
Description:
BigDFT-atlab: library for ATomic related operations.

bigdft-chess

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, ntpoly, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-CheSS: A module for performing Fermi Operator Expansions via Chebyshev Polynomials.

bigdft-core

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Link Dependencies:
cuda, blas, lapack, py-pyyaml, libgain, mpi, scalapack, openbabel, libxc, bigdft-futile, bigdft-chess, bigdft-psolver, bigdft-libabinit
Run Dependencies:
python
Description:
BigDFT-core: the core components of BigDFT, an electronic structure calculation based on Daubechies wavelets.

bigdft-futile

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, libyaml, py-pyyaml, mpi
Link Dependencies:
cuda, blas, lapack, libyaml, py-pyyaml, mpi
Run Dependencies:
python
Description:
BigDFT-futile: a library handling most common FORTRAN low-level operations, like memory managment, profiling routines, I/O operations. It also supports yaml output and parsing for fortran programs. It also provides wrappers routines to MPI and linear algebra operations. This library is intensively used in BigDFT packages.

bigdft-libabinit

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0
Build Dependencies:
gnuconfig, python, mpi, libxc, bigdft-futile
Link Dependencies:
mpi, libxc, bigdft-futile
Run Dependencies:
python
Description:
BigDFT-libABINIT: this is a subsection of files coming from ABINIT software package, to which BigDFT has been coupled since the early days. It handles different parts like symmetries, ewald corrections, PAW routines, density and potential mixing routines and some MD minimizers.

bigdft-psolver

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0
Build Dependencies:
cuda, gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Link Dependencies:
cuda, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-atlab
Run Dependencies:
python
Description:
BigDFT-Psolver: a flexible real-space Poisson Solver based on Interpolating Scaling Functions. It constitutes a fundamental building block of BigDFT code, and it can also be used separately and linked to other codes.

bigdft-spred

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0
Build Dependencies:
gnuconfig, python, blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Link Dependencies:
blas, lapack, py-pyyaml, mpi, scalapack, bigdft-futile, bigdft-psolver, bigdft-core
Run Dependencies:
python
Description:
BigDFT-spred: a library for structure prediction tools, that is compiled on top of BigDFT routines.

bigdft-suite

Homepage:
Spack package:
Versions:
develop, 1.9.2, 1.9.1, 1.9.0
Build Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Link Dependencies:
bigdft-futile, bigdft-psolver, bigdft-libabinit, bigdft-chess, bigdft-core, bigdft-spred, bigdft-atlab, py-bigdft
Run Dependencies:
python
Description:
BigDFT-suite: the complete suite of BigDFT for electronic structure calculation based on Daubechies wavelets.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
gnuconfig, pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.40, 2.39, 2.38, 2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.30, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
gnuconfig, zlib, diffutils, gettext, dejagnu, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
gnuconfig, boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
gnuconfig, diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitgroomingz

Homepage:
Spack package:
Versions:
master, 2022-10-14
Build Dependencies:
cmake, ninja, zlib
Link Dependencies:
zlib
Description:
BGZ: Bit Grooming Compressor

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
gnuconfig, glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake, ninja
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blackhat

Homepage:
Spack package:
Versions:
0.9.9
Build Dependencies:
gnuconfig, qd, python
Link Dependencies:
qd, python
Run Dependencies:
python
Description:
Blackhat MC generator

blaspp

Homepage:
Spack package:
Versions:
master, 2022.07.00, 2022.05.00, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, ninja, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.13.0, 2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
gnuconfig, cpio, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
37, 35
Build Dependencies:
libpng, libuuid, mysql-client
Link Dependencies:
libpng, libuuid, mysql-client
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, ninja, blas, lapack, boost, hpx
Link Dependencies:
blas, lapack, boost, hpx
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2
Build Dependencies:
gnuconfig, python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake, ninja
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Build Dependencies:
gnuconfig
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.5.2, 0.5.1, 0.5.0, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20220330, 20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main, 2.8.1
Build Dependencies:
gnuconfig, autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
master, 2.2.0, 2.1.2, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, ninja, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is an implementation of various matrix data formats (dense and sparse) and their associated algorithms for basic matrix operations used electronic structure solvers.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, ninja, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, py-virtualenv, py-pip, py-wheel, zlib, libsigsegv
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib, libsigsegv
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, ninja, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Build Dependencies:
gnuconfig
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, ninja, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.80.0, 1.79.0, 1.78.0, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, zstd, xz, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib, zstd, xz
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.19.1, 2.19.0, 2.18.2, 2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, ninja, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, ninja
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, ninja, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, ninja, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-popgen

Homepage:
Spack package:
Versions:
2.4.1
Build Dependencies:
cmake, ninja, bpp-seq
Link Dependencies:
bpp-seq
Description:
The Bio++ Population Genetics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, ninja, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, ninja, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, ninja, texinfo, bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl, bpp-popgen
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
2.7
Run Dependencies:
python, kraken2
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, ninja, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, ninja, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bricks

Homepage:
Spack package:
Versions:
r0.1
Build Dependencies:
cmake, ninja, autoconf, automake, libtool, opencl-clhpp, cuda, mpi
Link Dependencies:
opencl-clhpp, cuda, mpi
Description:
Bricks is a data layout and code generation framework, enabling performance-portable stencil computations across a multitude of architectures.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost, ncurses
Link Dependencies:
boost, ncurses
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, ninja
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.9, 1.0.7
Build Dependencies:
cmake, ninja
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, ninja, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brunsli

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
cmake, ninja
Description:
Brunsli is a lossless JPEG repacking library.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake, ninja
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

btop

Homepage:
Spack package:
Versions:
1.2.13
Description:
Resource monitor that shows usage and stats for processor, memory, disks, network and processes.

bubblewrap

Homepage:
Spack package:
Versions:
0.7.0, 0.6.2, 0.6.1, 0.6.0, 0.5.0, 0.4.1, 0.4.0, 0.3.3, 0.3.1
Build Dependencies:
gnuconfig, pkgconfig, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Build Dependencies:
gnuconfig
Description:
A Binary Decision Diagram library.

bueno

Homepage:
Spack package:
Versions:
master
Build Dependencies:
python, py-pip, py-wheel, py-pyyaml, py-lark, py-pika, py-setuptools
Run Dependencies:
python, py-pyyaml, py-lark, py-pika
Description:
Bueno: Well-Provenanced Benchmarking

bufr

Homepage:
Spack package:
Versions:
11.7.1, 11.7.0, 11.6.0, 11.5.0
Build Dependencies:
cmake, ninja
Description:
The NOAA bufr library contains subroutines, functions and other utilities that can be used to read (decode) and write (encode) data in BUFR, which is a WMO standard format for the exchange of meteorological data. This is part of the NCEPLIBS project.