Package ListΒΆ

This is a list of things you can install using Spack. It is automatically generated based on the packages in this Spack version.

Spack currently has 5948 mainline packages:

3dtk nvptx-tools py-timm
3proxy nvshmem py-tinyarray
abduco nvtop py-tokenizers
abi-compliance-checker nwchem py-toml
abi-dumper nyancat py-tomli
abinit ocaml py-tomlkit
abseil-cpp ocamlbuild py-tomopy
abyss occa py-toolz
accfft oce py-torch
acct oci-systemd-hook py-torch-cluster
accumulo ocl-icd py-torch-geometric
ace oclgrind py-torch-nvidia-apex
ack oclint py-torch-scatter
acl oclock py-torch-sparse
acpica-tools octave py-torch-spline-conv
acpid octave-arduino py-torchaudio
activeharmony octave-control py-torchfile
activemq octave-gsl py-torchgeo
acts octave-instrctl py-torchmeta
addrwatch octave-io py-torchmetrics
adept-utils octave-optim py-torchsummary
adf octave-quaternion py-torchtext
adiak octave-signal py-torchvision
adios octave-splines py-tornado
adios2 octave-statistics py-tox
adlbx octave-struct py-tpot
admixtools octave-symbolic py-tqdm
adms octopus py-traceback2
adol-c odc py-traitlets
advancecomp of-catalyst py-traits
adwaita-icon-theme of-precice py-traitsui
aegean omega-h py-transformers
aeskeyfind ompss py-transforms3d
aespipe ompt-openmp py-treehash
agrep onednn py-triangle
aida oniguruma py-tuiview
akantu onnx py-twine
alan ont-albacore py-twisted
albany opa-psm2 py-typed-ast
albert opam py-typeguard
alembic opari2 py-typesentry
alglib open-iscsi py-typing
allpaths-lg open-isns py-typing-extensions
alluxio openal-soft py-tzlocal
alpaka openbabel py-ucsf-pyem
alpgen openblas py-ucx-py
alps opencarp py-ujson
alquimia opencascade py-umalqurra
alsa-lib opencl-c-headers py-umi-tools
aluminum opencl-clhpp py-uncertainties
ambari opencl-headers py-unicycler
amber opencoarrays py-unidecode
amdblis opencv py-unittest2
amdfftw opendx py-unittest2py3k
amdlibflame openexr py-unshare
amdlibm openfast py-update-checker
amdscalapack openfdtd py-uproot
amg openfoam py-uproot3
amg2013 openfoam-org py-uproot3-methods
amgx openfst py-uproot4
aml opengl py-uritemplate
amp openglu py-urllib3
ampl openimageio py-urwid
ampliconnoise openipmi py-us
amr-wind openjdk py-usgs
amrex openjpeg py-utils
amrvis openkim-models py-uvloop
anaconda2 openldap py-uvw
anaconda3 openloops py-uwsgi
andi openmc py-vcf-kit
angsd openmm py-vcrpy
ant openmolcas py-vcstool
antimony openmpi py-vcstools
antlr openmx py-vcversioner
ants opennurbs py-vermin
aocc openpa py-versioneer
aocl-sparse openpbs py-vine
aoflagger openpmd-api py-virtualenv
aom openrasmol py-virtualenv-clone
aomp openresty py-virtualenvwrapper
apachetop openscenegraph py-visdom
apcomp openslide py-voluptuous
ape openslp py-vsc-base
aperture-photometry openspeedshop py-vsc-install
apex openspeedshop-utils py-vsts
apfel openssh py-vsts-cd-manager
apple-libunwind openssl py-walinuxagent
apple-libuuid openstf py-wand
applewmproto opensubdiv py-wandb
appres opentsdb py-warlock
apr openvdb py-warpx
apr-util openvslam py-wasabi
aragorn openwsman py-watchdog
arbor opium py-wcsaxes
arborx optional-lite py-wcwidth
archer optipng py-weave
argobots opus py-webencodings
argon2 oracle-instant-client py-webkit-server
argp-standalone orbit2 py-weblogo
args orc py-webob
argtable orca py-websocket-client
aria2 orfm py-websockets
arm orientdb py-werkzeug
arm-forge orthofiller py-wget
armadillo orthofinder py-whatshap
arpack-ng orthomcl py-wheel
arrayfire osi py-whichcraft
arrow osmctools py-whoosh
asagi osqp py-widgetsnbextension
ascent ossp-uuid py-wincertstore
asciidoc osu-micro-benchmarks py-word2number
asciidoc-py3 otf py-workload-automation
asdcplib otf2 py-wradlib
asdf-cxx p11-kit py-wrapt
asio p3dfft3 py-wstool
aspa p4est py-wub
aspcud p7zip py-wxmplot
aspect pacbio-daligner py-wxpython
aspell pacbio-damasker py-xarray
aspell6-de pacbio-dazz-db py-xattr
aspell6-en pacbio-dextractor py-xdot
aspell6-es pacifica-cli py-xenv
aspera-cli packmol py-xgboost
assimp pacparser py-xlrd
astra pacvim py-xlsxwriter
astral pagit py-xlwt
astyle pagmo py-xmlrunner
at-spi2-atk pajeng py-xmltodict
at-spi2-core pal py-xopen
atf paml py-xpyb
athena panda py-xvfbwrapper
atk pandaseq py-xxhash
atlas pandoc py-yacs
atmi pango py-yahmm
atom-dft pangolin py-yajl
atompaw pangomm py-yamlreader
atop papi py-yapf
attr papyrus py-yarl
audacious paradiseo py-yolk3k
audacity parallel py-youtube-dl
audit-userspace parallel-netcdf py-yt
augustus parallelio py-ytopt
authd parallelmergetree py-zarr
authselect paraver py-zc-buildout
autoconf paraview py-zc-lockfile
autoconf-archive parflow py-zict
autodock-gpu parmetis py-zipp
autodock-vina parmgridgen py-zope-event
autofact parmmg py-zope-interface
autogen parquet-cpp py-zxcvbn
automaded parquet-format pythia6
automake parsec pythia8
avizo parsimonator python
aws-parallelcluster parsplice q-e-sirius
awscli partitionfinder qbank
axel pasta qbox
axl patch qca
axom patchelf qcachegrind
babelflow patchutils qd
babeltrace pathfinder qemu
bacio pax-utils qgis
backupninja pbbam qgraf
bam-readcount pbmpi qhull
bamaddrg pbsuite qjson
bamdst pciutils qmcpack
bamtools pcl qmd-progress
bamutil pcma qnnpack
bannergrab pcre qorts
barrnap pcre2 qperf
bart pdc qrupdate
barvinok pdf2svg qscintilla
bash pdftk qt
bash-completion pdsh qt-creator
bashtop pdt qtgraph
bat pegtl qthreads
batctl pennant qtkeychain
bats percept qualimap
bazel percona-server quantum-espresso
bbcp perfstubs quartz
bbmap perl qucs
bc perl-acme-damn quicksilver
bcache perl-algorithm-diff quinoa
bcftools perl-alien-build quota
bcl2fastq2 perl-alien-libxml2 qwt
bdftopcf perl-alien-svn qwtpolar
bdii perl-app-cmd r
bdw-gc perl-array-utils r-a4
beagle perl-b-hooks-endofscope r-a4base
beakerlib perl-bio-searchio-hmmer r-a4classif
bear perl-bioperl r-a4core
beast-tracer perl-bit-vector r-a4preproc
beast1 perl-cairo r-a4reporting
beast2 perl-capture-tiny r-abadata
bedops perl-carp-clan r-abaenrichment
bedtools2 perl-cgi r-abind
beforelight perl-class-data-inheritable r-absseq
benchmark perl-class-inspector r-acde
berkeley-db perl-class-load r-acepack
berkeleygw perl-class-load-xs r-acgh
bertini perl-clone r-acme
bgpdump perl-clone-choose r-ada
bib2xhtml perl-compress-raw-bzip2 r-adabag
bigreqsproto perl-compress-raw-zlib r-ade4
bind9 perl-config-general r-adegenet
binutils perl-contextual-return r-adegraphics
bioawk perl-cpan-meta-check r-adephylo
biobambam2 perl-data-dumper r-adespatial
biobloom perl-data-optlist r-adgoftest
biopieces perl-data-stag r-adsplit
bird perl-date-manip r-aer
bismark perl-db-file r-afex
bison perl-dbd-mysql r-affxparser
bitlbee perl-dbd-pg r-affy
bitmap perl-dbd-sqlite r-affycomp
bitsery perl-dbi r-affycompatible
blaspp perl-devel-cycle r-affycontam
blasr perl-devel-globaldestruction r-affycoretools
blasr-libcpp perl-devel-overloadinfo r-affydata
blast-legacy perl-devel-stacktrace r-affyexpress
blast-plus perl-devel-symdump r-affyilm
blast2go perl-digest-md5 r-affyio
blat perl-dist-checkconflicts r-affypdnn
blaze perl-encode-locale r-affyplm
blis perl-error r-affyqcreport
bliss perl-eval-closure r-affyrnadegradation
blitz perl-exception-class r-agdex
blktrace perl-exporter-lite r-agilp
bloaty perl-exporter-tiny r-agimicrorna
blogbench perl-extutils-config r-aims
blt perl-extutils-depends r-aldex2
bmake perl-extutils-helpers r-allelicimbalance
bmi perl-extutils-installpaths r-alpine
bml perl-extutils-makemaker r-als
bohrium perl-extutils-pkgconfig r-alsace
boinc-client perl-ffi-checklib r-altcdfenvs
bolt perl-file-chdir r-amap
bonniepp perl-file-copy-recursive r-amelia
bookleaf-cpp perl-file-homedir r-ampliqueso
boost perl-file-listing r-analysispageserver
boostmplcartesianproduct perl-file-pushd r-anaquin
botan perl-file-sharedir-install r-aneufinder
bowtie perl-file-slurp r-aneufinderdata
bowtie2 perl-file-slurp-tiny r-animation
boxlib perl-file-slurper r-annaffy
bpp-core perl-file-which r-annotate
bpp-phyl perl-font-ttf r-annotationdbi
bpp-phyl-omics perl-forks r-annotationfilter
bpp-seq perl-fth r-annotationforge
bpp-seq-omics perl-gd r-annotationhub
bpp-suite perl-gdgraph r-anytime
bracken perl-gdgraph-histogram r-aod
braker perl-gdtextutil r-ape
branson perl-getopt-tabular r-argparse
breakdancer perl-graph r-aroma-light
bref3 perl-graph-readwrite r-askpass
breseq perl-hash-merge r-assertive
bridger perl-html-parser r-assertive-base
brigand perl-html-tagset r-assertive-code
brltty perl-http-cookies r-assertive-data
brotli perl-http-daemon r-assertive-data-uk
brpc perl-http-date r-assertive-data-us
brynet perl-http-message r-assertive-datetimes
bsseeker2 perl-http-negotiate r-assertive-files
bubblewrap perl-inline r-assertive-matrices
bucky perl-inline-c r-assertive-models
buddy perl-io-all r-assertive-numbers
bufr perl-io-compress r-assertive-properties
bumpversion perl-io-html r-assertive-reflection
busco perl-io-prompt r-assertive-sets
busybox perl-io-sessiondata r-assertive-strings
butter perl-io-socket-ssl r-assertive-types
butterflypack perl-io-string r-assertthat
bwa perl-io-stringy r-backports
bwtool perl-io-tty r-bamsignals
byacc perl-ipc-run r-base64
byobu perl-json r-base64enc
byte-unixbench perl-libwww-perl r-bayesm
byteman perl-libxml-perl r-bayesplot
bzip2 perl-list-moreutils r-bbmisc
c perl-list-moreutils-xs r-beachmat
c-ares perl-log-log4perl r-beanplot
c-blosc perl-logger-simple r-beeswarm
c-blosc2 perl-lwp-mediatypes r-bfast
c-lime perl-lwp-protocol-https r-bfastspatial
ca-certificates-mozilla perl-mailtools r-bglr
cabana perl-math-bezier r-bh
cachefilesd perl-math-cdf r-biasedurn
caffe perl-math-cephes r-bibtex
cairo perl-math-matrixreal r-bigalgebra
cairomm perl-math-round r-bigmemory
caliper perl-math-vecstat r-bigmemory-sri
callflow perl-mce r-bindr
callpath perl-module-build r-bindrcpp
camellia perl-module-build-tiny r-bio3d
camp perl-module-implementation r-biobase
camx perl-module-runtime r-biocfilecache
canal perl-module-runtime-conflicts r-biocgenerics
candle-benchmarks perl-moose r-biocinstaller
cantera perl-mozilla-ca r-biocmanager
canu perl-mro-compat r-biocneighbors
cap3 perl-namespace-clean r-biocparallel
capnproto perl-net-http r-biocsingular
capstone perl-net-scp-expect r-biocstyle
cardioid perl-net-ssleay r-biocversion
care perl-number-format r-biom-utils
casacore perl-object-insideout r-biomart
cask perl-package-deprecationmanager r-biomartr
casper perl-package-stash r-biomformat
cassandra perl-package-stash-xs r-biostrings
catalyst perl-padwalker r-biovizbase
catch2 perl-parallel-forkmanager r-bit
cbc perl-params-util r-bit64
cbench perl-params-validate r-bitops
cbflib perl-parse-recdescent r-blavaan
cblas perl-path-tiny r-blob
cbtf perl-pdf-api2 r-blockmodeling
cbtf-argonavis perl-pegex r-bmp
cbtf-argonavis-gui perl-perl-unsafe-signals r-bookdown
cbtf-krell perl-perl-version r-boot
cbtf-lanl perl-perl4-corelibs r-boruta
cc65 perl-perl6-slurp r-brew
ccache perl-perlio-gzip r-bridgesampling
ccfits perl-perlio-utf8-strict r-brio
ccls perl-readonly r-brms
ccs-qcd perl-regexp-common r-brobdingnag
cctools perl-scalar-list-utils r-broom
cdbfasta perl-scalar-util-numeric r-bsgenome
cdd perl-set-intervaltree r-bsgenome-hsapiens-ucsc-hg19
cddlib perl-set-intspan r-bsseq
cdecimal perl-set-scalar r-bumphunter
cdhit perl-soap-lite r-c50
cdo perl-star-fusion r-ca
ceed perl-statistics-basic r-cairo
cereal perl-statistics-descriptive r-callr
ceres-solver perl-statistics-pca r-car
cfitsio perl-sub-exporter r-caracas
cgal perl-sub-exporter-progressive r-cardata
cgdb perl-sub-identify r-caret
cgdcbxd perl-sub-install r-caretensemble
cget perl-sub-name r-caroline
cgl perl-sub-uplevel r-category
cgm perl-svg r-catools
cgns perl-swissknife r-cdcfluview
chai perl-sys-sigaction r-cellranger
changa perl-task-weaken r-champ
channelflow perl-term-readline-gnu r-champdata
chapel perl-termreadkey r-checkmate
chaplin perl-test-cleannamespaces r-checkpoint
charliecloud perl-test-deep r-chemometrics
charmpp perl-test-differences r-chipseq
chatterbug perl-test-exception r-chron
check perl-test-fatal r-circlize
chgcentre perl-test-memory-cycle r-circstats
chill perl-test-more r-class
chlorop perl-test-most r-classint
chombo perl-test-needs r-cli
chrony perl-test-output r-clipr
chrpath perl-test-requires r-clisymbols
cinch perl-test-requiresinternet r-clue
circos perl-test-warn r-cluster
cistem perl-test-warnings r-clustergeneration
citcoms perl-text-csv r-clusterprofiler
cityhash perl-text-diff r-cner
ck perl-text-format r-coda
clamav perl-text-simpletable r-codetools
clamr perl-text-soundex r-codex
clapack perl-text-unidecode r-coin
clara perl-thread-queue r-colorspace
claw perl-threads r-colourpicker
cleaveland4 perl-time-hires r-combinat
cleverleaf perl-time-piece r-commonmark
clfft perl-timedate r-complexheatmap
clhep perl-tk r-compositions
cli11 perl-try-tiny r-compquadform
clinfo perl-uri r-condop
clingo perl-want r-conquer
clingo-bootstrap perl-www-robotrules r-construct
cln perl-xml-dom r-convevol
cloc perl-xml-dom-xpath r-copula
cloog perl-xml-filter-buffertext r-corhmm
cloverleaf perl-xml-libxml r-corpcor
cloverleaf3d perl-xml-libxslt r-corrplot
clp perl-xml-namespacesupport r-countrycode
clustal-omega perl-xml-parser r-covr
clustalw perl-xml-parser-lite r-cowplot
cmake perl-xml-quote r-cpp11
cmaq perl-xml-regexp r-crayon
cmark perl-xml-sax r-credentials
cminpack perl-xml-sax-base r-crosstalk
cmocka perl-xml-sax-writer r-crul
cmockery perl-xml-simple r-ctc
cmor perl-xml-twig r-cubature
cnmem perl-xml-writer r-cubist
cnpy perl-xml-xpathengine r-curl
cntk perl-yaml r-dada2
cntk1bitsgd perl-yaml-libyaml r-data-table
cnvnator pestpp r-dbi
codar-cheetah petsc r-dbplyr
code-server pexsi r-debugme
codec2 pfapack r-decipher
codes pfft r-delayedarray
coevp pflask r-delayedmatrixstats
cohmm pflotran r-deldir
coin3d pfunit r-dendextend
coinhsl pgdspider r-deoptim
coinutils pgi r-deoptimr
collectd pgplot r-deriv
collier phantompeakqualtools r-desc
colm phast r-deseq
colordiff phasta r-deseq2
comd phist r-desolve
comgr phoenix r-devtools
commons-lang photos r-dexseq
commons-lang3 photos-f r-diagrammer
commons-logging php r-dicekriging
compadre phrap-crossmatch-swat r-dichromat
compiz phred r-diffobj
compositeproto phylip r-diffusionmap
conda4aarch64 phylobayesmpi r-digest
conduit phyluce r-diptest
connect-proxy picard r-dirichletmultinomial
conserver picsar r-dismo
console-bridge picsarlite r-diversitree
constype pidx r-dmrcate
consul pig r-dnacopy
converge pigz r-do-db
cool pilon r-domc
coral pindel r-doparallel
corenlp pinentry r-dorng
coreutils pinfo r-dose
corset pipework r-dosnow
cosbench piranha r-dotcall64
cosma pism r-downloader
cosmoflow-benchmark pixman r-dplyr
cosmomc pixz r-dqrng
cosp2 pkg-config r-dss
cotter pkgconf r-dt
couchdb pktools r-dtw
cowsay planck-likelihood r-dygraphs
cp2k plasma r-dynamictreecut
cpio platypus r-e1071
cpmd plink r-earth
cpp-httplib plink-ng r-ecp
cpp-termcolor plplot r-edger
cppad plumed r-effects
cppcheck ply r-elemstatlearn
cppgsl pmdk r-ellipse
cpprestsdk pmemkv r-ellipsis
cppunit pmerge r-emmeans
cppzmq pmgr-collective r-emmli
cpu-features pmix r-energy
cpuinfo pmlib r-enrichplot
cqrlib pnfft r-ensembldb
cquery pngquant r-envstats
cracklib pngwriter r-ergm
cradl pnmpi r-estimability
cram poamsa r-europepmc
cray-fftw pocl r-evaluate
cray-libsci podio r-evd
cray-mpich poke r-exactextractr
cray-mvapich2 polymake r-exomecopy
creduce poplddecay r-exomedepth
cromwell poppler r-experimenthub
cromwell-womtool poppler-data r-expint
cronie popt r-expm
crtm porta r-factoextra
cryptopp portage r-factominer
cryptsetup portcullis r-fansi
csa-c postgis r-farver
cscope postgresql r-fastcluster
csdp povray r-fastdigest
ctffind powerapi r-fastica
ctpl powertop r-fastmap
ctre ppl r-fastmatch
cub pplacer r-fastmatrix
cube ppopen-appl-amr-fdm r-fdb-infiniummethylation-hg18
cube-blade ppopen-appl-bem r-fdb-infiniummethylation-hg19
cubelib ppopen-appl-bem-at r-ff
cubew ppopen-appl-dem-util r-fftwtools
cubist ppopen-appl-fdm r-fgsea
cuda ppopen-appl-fdm-at r-fields
cuda-memtest ppopen-appl-fem r-filehash
cudnn ppopen-appl-fvm r-findpython
cufflinks ppopen-at r-fit-models
cunit ppopen-math-mp r-fitdistrplus
cupla ppopen-math-vis r-flashclust
cups prank r-flexclust
curl precice r-flexmix
cusz predixy r-fnn
cvector premake-core r-forcats
cvs presentproto r-foreach
cxx preseq r-forecast
cxxopts presto r-foreign
cxxtest price r-formatr
cyrus-sasl primer3 r-formula
czmq prinseq-lite r-fpc
dakota printproto r-fpcompare
daligner prism r-fracdiff
dalton prmon r-fs
damageproto prng r-futile-logger
damaris probconsrna r-futile-options
damask procenv r-future
damask-grid process-in-process r-future-apply
damask-mesh procps r-gamlss
damselfly procps-ng r-gamlss-data
darshan-runtime prod-util r-gamlss-dist
darshan-util prodigal r-gamm4
dash professor r-gbm
datamash profugusmc r-gbrd
dataspaces proj r-gcrma
datatransferkit prokka r-gdalutils
date prometheus r-gdata
dateutils protobuf r-gdsfmt
davix protobuf-c r-geiger
dbcsr proxymngr r-genefilter
dbow2 prrte r-genelendatabase
dbus pruners-ninja r-genemeta
dbus-glib ps-lite r-geneplotter
dbxtool psi4 r-generics
dcap psimd r-genetics
dcm2niix pslib r-genie3
dcmtk psm r-genomeinfodb
dd4hep psmc r-genomeinfodbdata
ddd pstreams r-genomicalignments
dealii pthreadpool r-genomicfeatures
dealii-parameter-gui pugixml r-genomicranges
debbuild pulseaudio r-gensa
debugedit pumi r-geomorph
decentralized-internet pv r-geonames
deconseq-standalone pvm r-geoquery
dejagnu pxz r-geor
delly2 py-3to2 r-geosphere
delphes py-4suite-xml r-gert
delta py-abcpy r-getopt
denovogear py-abipy r-getoptlong
dftbplus py-absl-py r-ggally
dftd3-lib py-accimage r-ggbeeswarm
dftd4 py-acme-tiny r-ggbio
dftfe py-adal r-ggdendro
dhpmm-f py-adb-enhanced r-ggforce
dhtest py-addict r-ggjoy
dia py-adios r-ggmap
dialign py-advancedhtmlparser r-ggplot2
dialign-tx py-aenum r-ggplotify
diamond py-affine r-ggpubr
dicom3tools py-agate r-ggraph
diffmark py-agate-dbf r-ggrepel
diffsplice py-agate-excel r-ggridges
diffutils py-agate-sql r-ggsci
dihydrogen py-aiobotocore r-ggsignif
dimemas py-aiodns r-ggthemes
ding-libs py-aiofiles r-ggvis
dire py-aiohttp r-gh
direnv py-aiohttp-cors r-gistr
discovar py-aioitertools r-git2r
discovardenovo py-aioredis r-gitcreds
disktype py-alabaster r-glimma
dislin py-alembic r-glmnet
distcc py-altgraph r-globaloptions
diy py-amqp r-globals
dlib py-angel r-globaltest
dlpack py-aniso8601 r-glue
dmd py-annexremote r-gmodels
dmidecode py-ansi2html r-gmp
dmlc-core py-ansible r-go-db
dmtcp py-antlr4-python3-runtime r-goftest
dmxproto py-anuga r-gofuncr
dnsmap py-anyio r-googlevis
dnsmasq py-anytree r-goplot
dnstop py-apache-beam r-gosemsim
dnstracer py-apache-libcloud r-goseq
docbook-xml py-apex r-gostats
docbook-xsl py-apipkg r-gower
dock py-appdirs r-gparotation
dos2unix py-applicationinsights r-gplots
dosfstools py-appnope r-graph
dotconf py-apptools r-graphlayouts
dotnet-core-sdk py-apscheduler r-grbase
double-conversion py-arcgis r-gridbase
doxygen py-archspec r-gridextra
dpdk py-argcomplete r-gridgraphics
draco py-argh r-gsa
dracut py-argon2-cffi r-gsalib
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dramsim3 py-args r-gsl
dray py-arrow r-gsodr
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dri3proto py-asciitree r-gstat
drill py-asdf r-gsubfn
dropwatch py-ase r-gtable
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dsrc py-asteval r-haven
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dtc py-astpretty r-hdf5r
dtcmp py-astroid r-hexbin
dtf py-astropy r-hh
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e2fsprogs py-async-generator r-hoardr
ea-utils py-async-lru r-htmltable
eagle py-async-timeout r-htmltools
earlyoom py-asyncio r-htmlwidgets
easybuild py-atomicwrites r-httpcode
ebms py-atpublic r-httpuv
ecbuild py-atropos r-httr
eccodes py-attrs r-hwriter
ecdsautils py-audioread r-hypergraph
ecflow py-autograd r-ica
eckit py-autograd-gamma r-igraph
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ecoslim py-avro r-illuminahumanmethylation450kmanifest
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ecp-proxy-apps py-avro-python3 r-illuminahumanmethylationepicmanifest
ed py-awesome-slugify r-illuminaio
editline py-awkward r-imager
editres py-awkward0 r-impute
edm4hep py-awkward1 r-influencer
eem py-azote r-ini
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eigen py-azure-cli r-insight
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elasticsearch py-azure-cli-core r-intervals
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elfio py-azure-cli-telemetry r-ipred
elfutils py-azure-common r-iranges
elk py-azure-core r-irdisplay
elmerfem py-azure-cosmos r-irkernel
elpa py-azure-datalake-store r-irlba
elsd py-azure-functions-devops-build r-isdparser
elsdc py-azure-graphrbac r-islr
elsi py-azure-identity r-iso
emacs py-azure-keyvault r-isoband
ember py-azure-keyvault-certificates r-isva
emboss py-azure-keyvault-keys r-iterators
embree py-azure-keyvault-nspkg r-jade
enca py-azure-keyvault-secrets r-janitor
enchant py-azure-loganalytics r-jaspar2018
energyplus py-azure-mgmt-advisor r-jomo
entrezdirect py-azure-mgmt-apimanagement r-jpeg
entt py-azure-mgmt-appconfiguration r-jsonlite
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enzo py-azure-mgmt-authorization r-kegggraph
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eospac py-azure-mgmt-batchai r-kernlab
eq-r py-azure-mgmt-billing r-kernsmooth
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erfa py-azure-mgmt-cdn r-klar
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esmf py-azure-mgmt-containerregistry r-labelled
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evemu py-azure-mgmt-devtestlabs r-lavaan
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exonerate-gff3 py-azure-mgmt-netapp r-lmtest
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f2c py-azure-mgmt-recoveryservicesbackup r-lubridate
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fairlogger py-azure-mgmt-reservations r-magick
faiss py-azure-mgmt-resource r-magrittr
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fann py-azure-mgmt-servicefabric r-mapplots
faodel py-azure-mgmt-signalr r-mapproj
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fasta py-azure-mgmt-storage r-mapview
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ffb py-basemap r-mitools
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ffr py-basis-set-exchange r-mlbench
ffsb py-batchspawner r-mlinterfaces
ffte py-bayesian-optimization r-mlr
fftw py-bcbio-gff r-mlrmbo
fgsl py-bcolz r-mmwrweek
fides py-bcrypt r-mnormt
figlet py-beancount r-mockery
figtree py-beautifulsoup4 r-modelmetrics
file py-beniget r-modelr
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fish py-biopython r-mvtnorm
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flatcc py-bokeh r-nimble
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flex py-bottle r-nnet
flexi py-bottleneck r-nnls
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flink py-brian r-nortest
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flit py-brotlipy r-npsurv
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flux-core py-bz2file r-openssl
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fmt py-cantoolz r-ordinal
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fortran py-celery r-paramhelpers
fortrilinos py-certifi r-party
foundationdb py-certipy r-partykit
fox py-cf-units r-patchwork
fp16 py-cffi r-pathview
fpc py-cfgrib r-pbapply
fpchecker py-cfgv r-pbdzmq
fping py-cftime r-pbivnorm
fplll py-chai r-pbkrtest
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fpocket py-chainmap r-pcapp
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fr-hit py-chardet r-permute
fraggenescan py-charm4py r-pfam-db
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frontier-client py-cinema-lib r-picante
frontistr py-cinemasci r-pillar
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ftgl py-click-repl r-pkgmaker
ftk py-cligj r-plogr
ftobjectlibrary py-clint r-plot3d
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fujitsu-mpi py-cloudpickle r-plotmo
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fullock py-cmake r-pls
funhpc py-cmake-format r-plyr
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fxdiv py-cnvkit r-png
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g2 py-cogent r-polynom
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g2tmpl py-colorclass r-popvar
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g4ndl py-colorlog r-preprocesscore
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g4photonevaporation py-colorspacious r-proc
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g4realsurface py-configobj r-progress
g4saiddata py-configparser r-proj
g4tendl py-contextily r-proj4
gamess-ri-mp2-miniapp py-contextlib2 r-projpred
gams py-contextvars r-promises
ganglia py-convertdate r-protgenerics
gapbs py-convokit r-proto
gapcloser py-cookiecutter r-proxy
gapfiller py-cookies r-pryr
garfieldpp py-counter r-ps
gasnet py-cov-core r-pscbs
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gatepet2stir py-coveralls r-psych
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gcc py-csvkit r-quantro
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gccxml py-cuml r-quickplot
gchp py-cupy r-qvalue
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gdbm py-cycler r-r6
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geant4 py-cython-bbox r-randomglm
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geant4-vmc py-d2to1 r-rann
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genomeworks py-datalad-container r-rcpparmadillo
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geoip-api-c py-datalad-webapp r-rcppdate
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geos py-dateparser r-rcpphnsw
gettext py-dbf r-rcppparallel
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gfsio py-deap r-rcurl
gh py-debtcollector r-rda
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ghostscript py-decorator r-readbitmap
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giflib py-defusedxml r-reams
ginac py-dendropy r-recipes
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git py-descartes r-rematch2
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gitconddb py-dipy r-repr
gl2ps py-discover r-reprex
glew py-diskcache r-reproducible
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glib py-django r-reshape2
glib-networking py-dlcpar r-reticulate
glibmm py-dm-tree r-rex
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glm py-docker r-rgdal
global py-dockerpy-creds r-rgenoud
globalarrays py-docopt r-rgeos
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gloo py-docutils-stubs r-rgl
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glproto py-dotnetcore2 r-rgraphviz
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gmodel py-dryscrape r-rinside
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gnome-common py-earthengine-api r-rlang
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gnuplot py-easybuild-framework r-rmarkdown
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gnutls py-ecdsa r-rmpfr
go py-ecos r-rmpi
go-bootstrap py-edffile r-rms
go-md2man py-editdistance r-rmutil
gobject-introspection py-efficientnet-pytorch r-rmysql
goblin-hmc-sim py-eg r-rnaseqmap
googletest py-einops r-rncl
gosam-contrib py-elasticsearch r-rnexml
gotcha py-elephant r-rngtools
gource py-emcee r-rnoaa
gpdb py-emoji r-robust
gperf py-empy r-robustbase
gperftools py-entrypoints r-roc
gpgme py-enum34 r-rocr
gpi-2 py-envisage r-rodbc
gplates py-ephem r-rook
gprolog py-epydoc r-rots
gptl py-espresso r-roxygen2
gpu-burn py-espressopp r-rpart
gqrx py-et-xmlfile r-rpart-plot
gr-osmosdr py-etelemetry r-rpmm
grabix py-eventlet r-rpostgres
grace py-execnet r-rpostgresql
grackle py-exifread r-rprojroot
gradle py-exodus-bundler r-rrblup
grads py-extension-helpers r-rrcov
grafana py-extras r-rrpp
grandr py-ez-setup r-rsamtools
graph500 py-f90wrap r-rsconnect
graphblast py-fabric r-rsnns
graphicsmagick py-falcon r-rsolnp
graphite2 py-fallocate r-rspectra
graphlib py-fastaindex r-rsqlite
graphmap py-fastavro r-rstan
graphviz py-fastcache r-rstantools
grass py-fastcluster r-rstatix
graylog2-server py-fastcov r-rstudioapi
grep py-fastdtw r-rsvd
grib-api py-fasteners r-rtracklayer
grib-util py-fastrlock r-rtsne
gridlab-d py-faststructure r-runit
grnboost py-fava r-runjags
groff py-fenics-basix r-ruv
gromacs py-fenics-dijitso r-rvcheck
gromacs-chain-coordinate py-fenics-dolfinx r-rversions
grpc py-fenics-ffc r-rvest
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gsl py-fenics-fiat r-rzmq
gslib py-fenics-instant r-s2
gtk-doc py-fenics-ufl r-s4vectors
gtkmm py-filelock r-samr
gtkorvo-atl py-filemagic r-sandwich
gtkorvo-cercs-env py-filterpy r-satellite
gtkorvo-dill py-findlibs r-scales
gtkorvo-enet py-fiona r-scater
gtkplus py-fiscalyear r-scattermore
gtksourceview py-fisher r-scatterpie
gts py-fits-tools r-scatterplot3d
guacamole-client py-fixtures r-scrime
guacamole-server py-flake8 r-sctransform
guidance py-flake8-import-order r-scuttle
guile py-flake8-polyfill r-sdmtools
gunrock py-flameprof r-segmented
gurobi py-flask r-selectr
gxsview py-flask-babel r-seqinr
gzip py-flask-compress r-seqlogo
h2database py-flask-cors r-servr
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h5hut py-flatbuffers r-sf
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h5utils py-flexmock r-shadowtext
h5z-zfp py-flexx r-shape
hacckernels py-flit r-shiny
hackrf-host py-flit-core r-shinydashboard
hadoop py-flufl-lock r-shinyfiles
hal py-flye r-shinyjs
halc py-fn-py r-shinystan
half py-fortran-language-server r-shinythemes
hama py-fortranformat r-shortread
hapcut2 py-fparser r-siggenes
hapdip py-fprettify r-simpleaffy
haploview py-freezegun r-singlecellexperiment
haproxy py-fsspec r-sitmo
hardlink py-ftfy r-sm
harfbuzz py-funcsigs r-smoof
harminv py-functools32 r-sn
hashcat py-funcy r-snakecase
haveged py-fury r-snow
hazelcast py-fusepy r-snowfall
hbase py-future r-snprelate
hbm-dramsim2 py-futures r-snpstats
hc py-fuzzywuzzy r-som
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hcoll py-gast r-sourcetools
hdf py-gcovr r-sp
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hdf-eos5 py-gdbgui r-spades
hdf5 py-gdc-client r-spades-addins
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hdfview py-geeadd r-spades-tools
healpix-cxx py-geeup r-spam
heaptrack py-gemini r-sparsem
heffte py-genders r-sparsematrixstats
helics py-geneimpacts r-spatial
help2man py-genshi r-spatialeco
henson py-gensim r-spatialpack
hepmc py-geoalchemy2 r-spatialreg
hepmc3 py-geocube r-spatstat
hepmcanalysis py-geographiclib r-spatstat-data
heppdt py-geopandas r-spatstat-utils
heputils py-geoplot r-spdata
hercules py-geopy r-spdep
herwig3 py-getorganelle r-speedglm
herwigpp py-gevent r-spem
hevea py-gf256 r-splancs
hibench py-gffutils r-splitstackshape
hic-pro py-git-review r-sqldf
hicolor-icon-theme py-gitdb r-squarem
highfive py-gitpython r-squash
highwayhash py-glmnet r-sseq
hiop py-globus-sdk r-stabledist
hip py-gluoncv r-stanheaders
hip-rocclr py-gnuplot r-stargazer
hipace py-goatools r-statmod
hipblas py-gooey r-statnet-common
hipcub py-google r-stringfish
hipfft py-google-api-core r-stringi
hipfort py-google-api-python-client r-stringr
hipify-clang py-google-apitools r-strucchange
hipsparse py-google-auth r-styler
hipsycl py-google-auth-httplib2 r-subplex
hiredis py-google-auth-oauthlib r-summarizedexperiment
hisat2 py-google-cloud-core r-suppdists
hisea py-google-cloud-storage r-survey
hive py-google-pasta r-survival
hivex py-google-resumable-media r-sva
hmmer py-googleapis-common-protos r-svglite
hohqmesh py-googledrivedownloader r-sys
homer py-gosam r-systemfonts
hoomd-blue py-gpaw r-tarifx
hoppet py-gpustat r-taxizedb
hotspot py-gputil r-tclust
hpcc py-gpy r-teachingdemos
hpccg py-gpyopt r-tensor
hpcg py-gpytorch r-tensora
hpctoolkit py-gql r-tester
hpcviewer py-grandalf r-testit
hpcx-mpi py-graphql-core r-testthat
hpddm py-graphviz r-tfbstools
hpgmg py-greenlet r-tfisher
hping py-grequests r-tfmpvalue
hpl py-griddataformats r-th-data
hpx py-grpcio r-threejs
hpx5 py-gsd r-tibble
hsa-rocr-dev py-gsi r-tictoc
hsakmt py-gsutil r-tidycensus
hsakmt-roct py-guidata r-tidygraph
hsf-cmaketools py-guiqwt r-tidyr
hssp py-gym r-tidyselect
hstr py-h11 r-tidyverse
htop py-h2 r-tiff
htslib py-h5glance r-tigris
http-get py-h5netcdf r-timedate
http-load py-h5py r-tinytex
http-parser py-h5sh r-tmixclust
http-ping py-hacking r-tmvnsim
http-post py-haphpipe r-topgo
httpd py-hatchet r-triebeard
httperf py-hdbscan r-trimcluster
httpie py-hdfs r-truncdist
httping py-healpy r-truncnorm
httpress py-heapdict r-trust
hub py-hepdata-validator r-tseries
hudi py-hepunits r-tsne
hugo py-hieroglyph r-ttr
hunspell py-hiredis r-tweenr
hw-probe py-holland-backup r-txdb-hsapiens-ucsc-hg18-knowngene
hwdata py-horovod r-txdb-hsapiens-ucsc-hg19-knowngene
hwloc py-hpack r-tximport
hybpiper py-hpcbench r-tximportdata
hybrid-lambda py-hpccm r-ucminf
hybridsim py-hstspreload r-udunits2
hydra py-html2text r-units
hydrogen py-html5lib r-upsetr
hyperscan py-htmlgen r-urca
hyphen py-htseq r-urltools
hyphy py-httpbin r-usethis
hypre py-httpcore r-utf8
hypre-cmake py-httplib2 r-uuid
i3 py-httpretty r-uwot
ibm-databroker py-httptools r-v8
ibm-java py-httpx r-variantannotation
ibmisc py-huggingface-hub r-varselrf
icarus py-humanfriendly r-vcd
iceauth py-humanize r-vcfr
icedtea py-hvac r-vctrs
icet py-hyperframe r-vegan
ico py-hyperopt r-vfs
icu4c py-hypothesis r-vgam
id3lib py-ibm-cloud-sdk-core r-vioplot
idba py-ibm-watson r-vipor
idl py-ics r-viridis
iegenlib py-identify r-viridislite
ignite py-idna r-visnetwork
igprof py-idna-ssl r-vsn
igraph py-illumina-utils r-waldo
igv py-ilmbase r-watermelon
igvtools py-imageio r-webshot
ike-scan py-imageio-ffmpeg r-wgcna
ilmbase py-imagesize r-whisker
ima-evm-utils py-imgaug r-withr
imagemagick py-iminuit r-wk
imake py-immutables r-xde
imlib2 py-importlib r-xfun
imp py-importlib-metadata r-xgboost
impute2 py-importlib-resources r-xlconnect
infernal py-inference-schema r-xlconnectjars
influxdb py-inheritance r-xlsx
iniparser py-iniconfig r-xlsxjars
inputproto py-iniparse r-xmapbridge
intel py-intel-openmp r-xml
intel-daal py-intervaltree r-xml2
intel-gpu-tools py-invoke r-xnomial
intel-ipp py-iocapture r-xopen
intel-llvm py-ipaddress r-xtable
intel-mkl py-ipdb r-xts
intel-mpi py-ipycanvas r-xvector
intel-mpi-benchmarks py-ipyevents r-yaimpute
intel-oneapi-advisor py-ipykernel r-yaml
intel-oneapi-ccl py-ipyparallel r-yapsa
intel-oneapi-compilers py-ipython r-yaqcaffy
intel-oneapi-dal py-ipython-cluster-helper r-yarn
intel-oneapi-dnn py-ipython-genutils r-zcompositions
intel-oneapi-dpl py-ipyvtk-simple r-zeallot
intel-oneapi-inspector py-ipywidgets r-zip
intel-oneapi-ipp py-irpf90 r-zlibbioc
intel-oneapi-ippcp py-iso8601 r-zoo
intel-oneapi-mkl py-isodate r3d
intel-oneapi-mpi py-isort rabbitmq
intel-oneapi-tbb py-itk racon
intel-oneapi-vpl py-itsdangerous raft
intel-oneapi-vtune py-jaraco-functools ragel
intel-parallel-studio py-javaproperties raja
intel-pin py-jdatetime ramulator
intel-tbb py-jdcal randfold
intel-xed py-jedi random123
interproscan py-jeepney randrproto
intltool py-jellyfish range-v3
ioapi py-jinja2 rankstr
ior py-jinja2-time rapidjson
iozone py-jmespath raptor2
ip py-joblib rasdaemon
ip2 py-jplephem rasqal
ipcalc py-jprops ravel
iperf2 py-jpype1 raxml
iperf3 py-jsmin raxml-ng
ipopt py-json-get ray
iproute2 py-json5 rccl
iptraf-ng py-jsondiff rclone
iq-tree py-jsonpatch rdc
irep py-jsonpath-ng rdkit
isaac py-jsonpickle rdma-core
isaac-server py-jsonpointer rdp-classifier
isc-dhcp py-jsonref rdptools
isescan py-jsonschema re2
isl py-junit-xml re2c
iso-codes py-jupyter readfq
ispc py-jupyter-client readline
istio py-jupyter-console recola
itensor py-jupyter-core recola-sm
itk py-jupyter-packaging recon
itstool py-jupyter-server recorder
itsx py-jupyter-telemetry recordproto
iwyu py-jupyterhub redis
jackcess py-jupyterlab reditools
jafka py-jupyterlab-pygments redland
jags py-jupyterlab-server redland-bindings
jali py-jupyterlab-widgets redset
jansi py-jupytext redundans
jansi-native py-keras reframe
jansson py-keras-applications regcm
jasper py-keras-preprocessing relax
jbigkit py-kerberos relion
jblob py-keyboard remhos
jchronoss py-keyring rempi
jdk py-keyrings-alt rename
jellyfish py-keystoneauth1 rendercheck
jemalloc py-kitchen renderproto
jetty-project py-kiwisolver repeatmasker
jhpcn-df py-kmodes repeatmodeler
jimtcl py-knack repeatscout
jline3 py-kombu reprimand
jmol py-kornia resourceproto
jose py-kubernetes revbayes
jpegoptim py-labours revocap-coupler
jq py-lap revocap-refiner
json-c py-lark-parser rgb
json-cwx py-latexcodec rhash
json-fortran py-lazy rinetd
json-glib py-lazy-object-proxy ripgrep
jsoncpp py-lazy-property rivet
jstorm py-lazyarray rlwrap
jube py-leather rmats
judy py-lerc rmgdft
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julia py-libensemble rna-seqc
junit4 py-librosa rnaquast
k8 py-lifelines rnaz
kadath py-lightgbm rng-tools
kafka py-ligo-segments rngstreams
kahip py-line-profiler rnpletal
kaiju py-linecache2 rocalution
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kaldi py-lit rocfft
kallisto py-llvmlite rocketmq
karma py-lmfit rocksdb
kassiopeia py-lmodule rockstar
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kcov py-lockfile rocm-cmake
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kea py-louie rocm-debug-agent
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keepassxc py-luigi rocm-opencl
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keyutils py-lz4 rocm-smi
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kineto py-macs2 rocprim
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knem py-mako rocsparse
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kokkos-legacy py-markdown2 rodinia
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kraken2 py-matplotlib rose
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krims py-mayavi routino
kripke py-mccabe rpcsvc-proto
kubernetes py-mdanalysis rpm
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kylin py-memory-profiler rsbench
ladot py-memprof rsem
laghos py-mercantile rstart
lame py-merlin rstudio
lammps py-meshio rsync
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last py-metpy rtags
lastz py-mffpy rtax
laszip py-mg-rast-tools ruby
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latte py-mikado ruby-erubis
launchmon py-minrpc ruby-gnuplot
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lbann py-mistune ruby-mustache
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lcio py-mmcv ruby-ronn
lcms py-mmtf-python ruby-rubyinline
lcov py-mne ruby-svn2git
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ldc py-mock ruby-thor
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legion py-moltemplate ruby-unicode-display-width
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lerc py-more-itertools rust
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lesstif py-mouseinfo sabre
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libao py-msgpack sambamba
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libapreq2 py-msrest samrai
libarchive py-msrestazure samtools
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libblastrampoline py-mx scala
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libbson py-mypy scallop
libbytesize py-mypy-extensions scalpel
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libcanberra py-mysqlclient scantailor
libcap py-mysqldb1 scipoptsuite
libcap-ng py-nanotime scons
libcatalyst py-natsort scorec-core
libceed py-nbclassic scorep
libcerf py-nbclient scotch
libcgroup py-nbconvert scr
libcint py-nbformat screen
libcircle py-nbmake scripts
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libconfuse py-nc-time-axis scrot
libcroco py-ndg-httpsclient scs
libctl py-neo sctk
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libcxxwrap-julia py-nestle seacas
libcyaml py-netaddr sed
libdaemon py-netcdf4 sensei
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libdatrie py-netket sentieon-genomics
libdc1394 py-networkit seqan
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libdrm py-nibabel serf
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libeatmydata py-nipype setserial
libecpint py-nistats setxkbmap
libedit py-nitransforms sfcgal
libelf py-niworkflows sfcio
libemos py-nltk sga
libepoxy py-nodeenv sgpp
libestr py-nose shadow
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libevdev py-nose2 shapeit4
libevent py-nosexcover shapelib
libevpath py-notebook shared-mime-info
libexif py-ntlm-auth shark
libfabric py-ntplib shc
libfastcommon py-num2words shengbte
libfastjson py-numba shiny-server
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libfive py-numexpr3 shoremap
libflame py-numpy shortbred
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libfuse py-nvidia-ml-py3 shtools
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libgd py-olefile siesta
libgeotiff py-omegaconf sigio
libgff py-onnx signalp
libgit2 py-ont-fast5-api signify
libgpg-error py-opcodes silo
libgpuarray py-opencensus simde
libgridxc py-opencensus-context simgrid
libgssglue py-openidc-client simmetrix-simmodsuite
libgtextutils py-openmc simplemoc
libharu py-openpmd-validator simsipm
libhbaapi py-openpyxl simul
libhio py-openslide-python simulationio
libhugetlbfs py-opentuner sina
libiberty py-opppy singularity
libibumad py-opt-einsum singularity-legacy
libical py-or-tools singularityce
libice py-ordered-set sio
libiconv py-ordereddict sionlib
libid3tag py-os-service-types sirius
libidl py-oset skilion-onedrive
libidn2 py-oslo-config skopeo
libimagequant py-oslo-i18n sl
libimobiledevice py-oslo-serialization slang
libinih py-oslo-utils slate
libint py-osqp sleef
libisal py-overpy slepc
libiscsi py-owslib slf4j
libjpeg py-pacifica-downloader slider
libjpeg-turbo py-pacifica-namespace sloccount
libjson py-pacifica-uploader slurm
libjwt py-packaging slurm-drmaa
libkcapi py-pager smalt
libkml py-palettable smartdenovo
libksba py-pamela smartmontools
liblas py-pandas smof
liblbfgs py-pandocfilters smproxy
liblbxutil py-parameterized snakemake
liblockfile py-paramiko snap
liblognorm py-paramz snap-berkeley
liblouis py-parse snap-korf
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libmatheval py-partd snpeff
libmaus2 py-particle snphylo
libmaxminddb py-path-py snptest
libmbim py-pathlib soapdenovo-trans
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libmd py-pathos soci
libmesh py-pathspec sofa-c
libmetalink py-pathtools sollve
libmicrodns py-patool sollya
libmicrohttpd py-patsy solr
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libmng py-pbr sombrero
libmnl py-peachpy sonlib
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libmodbus py-pep8 sos
libmonitor py-pep8-naming sosflow
libmpdclient py-performance source-highlight
libnbc py-periodictable sowing
libndp py-petastorm sox
libnet py-petsc4py sp
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libnetworkit py-picmistandard sparse
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libnfsidmap py-pid sparta
libnftnl py-pika spath
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libnl py-pillow specfem3d-globe
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libnrm py-pip speexdsp
libnsl py-pipits spfft
libogg py-pispino spglib
liboldx py-pkgconfig sph2pipe
libopts py-pkginfo spherepack
libp11 py-plac spindle
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libpaper py-planet spla
libpcap py-plotly spm
libpciaccess py-pluggy spot
libpeas py-ply sprng
libpfm4 py-pmw sqlcipher
libpipeline py-pockets sqlite
libplist py-pomegranate sqlite-jdbc
libpmemobj-cpp py-pooch sqlitebrowser
libpng py-portalocker sqoop
libproxy py-portend squashfs
libpsl py-poster squashfuse
libpsml py-pot squid
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libpulsar py-poyo srilm
libqglviewer py-ppft sse2neon
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libquo py-preshed sshpass
librdkafka py-pretrainedmodels ssht
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libristra py-profilehooks sspace-longread
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librom py-progress sst-core
librsb py-progressbar2 sst-dumpi
librsvg py-projectq sst-elements
librtlsdr py-prometheus-client sst-macro
libsakura py-promise sst-transports
libsamplerate py-prompt-toolkit stacks
libseccomp py-protobuf staden-io-lib
libsecret py-prov star
libsharp py-psutil star-ccm-plus
libshm py-psyclone startup-notification
libsigcpp py-psycopg2 stat
libsignal-protocol-c py-ptyprocess stata
libsigsegv py-pudb static-analysis-suite
libsm py-pure-eval stc
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libsodium py-py stinger
libspatialindex py-py-cpuinfo storm
libspatialite py-py-spy stow
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libsplash py-py2cairo stream
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libtar py-pyamg stringtie
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libthai py-pyasn1 strumpack
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libunwind py-pycbc superlu-mt
libusb py-pychecker supernova
libusbmuxd py-pycifrw sw4lite
libuser py-pycmd swap-assembler
libuuid py-pycocotools swarm
libuv py-pycodestyle swfft
libvdwxc py-pycosat swftools
libverto py-pycparser swiftsim
libvips py-pycrypto swig
libvorbis py-pycuda swipl
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libvpx py-pydantic symlinks
libvterm py-pydap sympol
libwebp py-pydatalog sysbench
libwebsockets py-pydeprecate syscalc
libwhich py-pydeps sysfsutils
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libxml2 py-pygeos tcl-tclxml
libxmu py-pygetwindow tclap
libxp py-pygit2 tcoffee
libxpm py-pygithub tcpdump
libxpresent py-pyglet tcptrace
libxprintapputil py-pygments tcsh
libxprintutil py-pygments-pytest tdengine
libxrandr py-pygobject tealeaf
libxrender py-pygps teckit
libxres py-pygpu tecplot
libxscrnsaver py-pygresql tempestremap
libxshmfence py-pygtk templight
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libxsmm py-pyh5md tengine
libxstream py-pyheadtail tensorflow-serving-client
libxt py-pyinstrument tensorpipe
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libxtst py-pyjnius tesseract
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libxvmc py-pyke tetgen
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libxxf86misc py-pykokkos-base texinfo
libxxf86vm py-pykwalify texlive
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libyogrt py-pylikwid textparser
libzip py-pylint tfel
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liggghts py-pymatgen the-silver-searcher
lighttpd py-pymc3 thepeg
ligra py-pymeeus thornado-mini
likwid py-pyminifier thrift
linkphase3 py-pymol thrust
linktest py-pymongo tidy-html5
linsys-v py-pymorph tig
linux-headers py-pympler time
linux-pam py-pymsgbox timedatex
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listres py-pymysql tinker
lizard py-pynacl tinyxml
lksctp-tools py-pynio tinyxml2
llvm py-pynn tioga
llvm-amdgpu py-pynvml tippecanoe
llvm-doe py-pyodbc tiptop
llvm-openmp py-pyomo tix
llvm-openmp-ompt py-pyopencl tixi
lm-sensors py-pyopenssl tk
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lmdb py-pyparsing tldd
lmod py-pypeflow tmalign
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log4cpp py-pyprecice toml11
log4cxx py-pyprof2html tophat
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logstash py-pyqi totalview
loki py-pyqt4 tpm2-tss
looptools py-pyqt5 tppred
lordec py-pyqt5-sip tracer
lorene py-pyquaternion tramonto
lp-solve py-pyrad transabyss
lrslib py-pyrect transdecoder
lrzip py-pyrosar transposome
lsf py-pyrsistent transrate
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lsof py-pyscaf trapproto
lsscsi py-pyscf tree
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ltr-retriever py-pyserial treesub
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lua-bitlib py-pyside2 trident
lua-lpeg py-pysmartdl trilinos
lua-luafilesystem py-pysocks trilinos-catalyst-ioss-adapter
lua-luajit py-pysolar trimal
lua-luaposix py-pyspark trimgalore
lua-mpack py-pysqlite trimmomatic
lua-sol2 py-pystac trinity
lucene py-pysurfer trinotate
luit py-pytailf trnascan-se
lulesh py-pytest tskit
lumpy-sv py-pytest-arraydiff tulip
lustre py-pytest-benchmark turbine
lvarray py-pytest-cache turbomole
lvm2 py-pytest-check-links turnserver
lwgrp py-pytest-cov tut
lwm2 py-pytest-cpp twm
lxc py-pytest-doctestplus tycho2
lynx py-pytest-flake8 typhon
lz4 py-pytest-flakes typhonio
lzma py-pytest-forked uchardet
lzo py-pytest-html ucx
lzop py-pytest-httpbin udunits
m4 py-pytest-isort ufo-core
macfuse py-pytest-metadata ufo-filters
macsio py-pytest-mock ufs-utils
mad-numdiff py-pytest-mypy ufs-weather-model
madgraph5amc py-pytest-openfiles uftrace
mafft py-pytest-pep8 umap
magics py-pytest-qt umesimd
magma py-pytest-random-order umoci
mahout py-pytest-runner umpire
makedepend py-pytest-timeout unblur
maker py-pytest-xdist uncrustify
mallocmc py-python-benedict unibilium
maloc py-python-box unifdef
man-db py-python-certifi-win32 unifyfs
manta py-python-daemon unigen
mapnik py-python-dateutil unison
mapserver py-python-docs-theme units
mapsplice2 py-python-editor unittest-cpp
maq py-python-engineio universal-ctags
margo py-python-fmask unixodbc
mariadb py-python-fsutil unqlite
mariadb-c-client py-python-gitlab unrar
mark py-python-igraph unuran
masa py-python-jenkins unzip
mash py-python-json-logger upcxx
masurca py-python-keystoneclient upp
mathematica py-python-ldap uqtk
matio py-python-levenshtein uriparser
matlab py-python-logstash usbutils
maven py-python-louvain usearch
maverick py-python-lzo userspace-rcu
mawk py-python-magic utf8proc
mbdyn py-python-mapnik util-linux
mbedtls py-python-meep util-linux-uuid
mc py-python-memcached util-macros
mcl py-python-oauth2 uvw
mcpp py-python-picard valgrind
mcutils py-python-rapidjson vampirtrace
mdsplus py-python-slugify vapor
mdtest py-python-socketio vardictjava
med py-python-subunit variorum
meep py-python-swiftclient varnish-cache
mefit py-python-utils varscan
megadock py-python-xlib vasp
megahit py-python-xmp-toolkit vbfnlo
melissa py-python3-xlib vc
memaxes py-pythonqwt vcftools
memcached py-pythonsollya vcsh
meme py-pythran vdt
memkind py-pytimeparse veccore
memsurfer py-pytools vecgeom
memtester py-pytorch-gradual-warmup-lr veclibfort
meraculous py-pytorch-lightning vegas2
mercurial py-pytorch-sphinx-theme veloc
mercury py-pytweening velvet
mesa py-pytz velvetoptimiser
mesa-demos py-pyudev verilator
mesa-glu py-pyugrid verrou
mesa18 py-pyusb vesta
meshkit py-pyutilib vgm
meshtool py-pyvcf videoproto
meson py-pyvista viennarna
mesquite py-pyvistaqt viewres
metabat py-pywavelets vifi
metall py-pywcs vigra
metaphysicl py-pyyaml vim
metis py-pyzmq virtest
metkit py-qsymm virtualgl
mfem py-qtawesome virtuoso
mg py-qtconsole visit
mgis py-qtpy visit-cgns
microbiomeutil py-quantities visit-ffp
migraphx py-quast visit-mfem
migrate py-queryablelist visit-silo
mii py-questionary visit-unv
minc-toolkit py-radiant-mlhub vizglow
minced py-radical-entk vmatch
mindthegap py-radical-gtod vmc
miniaero py-radical-pilot vmd
miniamr py-radical-saga volk
miniapp-ascent py-radical-utils voropp
miniasm py-ranger-fm votca-csg
miniconda2 py-rarfile votca-csg-tutorials
miniconda3 py-rasterio votca-csgapps
minife py-ratelim votca-ctp
miniforge3 py-raven votca-tools
minigan py-ray votca-xtp
minighost py-rbtools vpfft
minigmg py-rdflib vpic
minimap2 py-readme-renderer vsearch
minimd py-recommonmark vsftpd
minio py-redis vt
miniqmc py-regex vtable-dumper
minisign py-reindent vtk
minismac2d py-reportlab vtk-h
minitri py-repoze-lru vtk-m
minivite py-reproject vvtest
minixyce py-requests w3emc
minizip py-requests-ftp w3m
minuit py-requests-futures w3nco
miopen-hip py-requests-mock wannier90
miopen-opencl py-requests-ntlm warpx
miopengemm py-requests-oauthlib watch
mira py-requests-toolbelt wayland
miranda py-requests-unixsocket wayland-protocols
mirdeep2 py-resampy wcs
mitofates py-responses wcslib
mitos py-restview webbench
mivisionx py-resultsfile weechat
mixcr py-retry-decorator weighttp
mkfontdir py-retrying wget
mkfontscale py-rfc3986 wgrib2
mlhka py-rich wgsim
mlocate py-rios which
mlperf-deepcam py-rioxarray whizard
mmg py-rise windowswmproto
mmv py-rmm wireshark
moab py-rnacocktail wonton
mochi-margo py-rnc2rng wordnet
model-traits py-robotframework workrave
modeltest-ng py-rope wps
modern-wheel py-rosdep wrf
modylas py-rosdistro wrf-io
mofem-cephas py-rosinstall wrk
mofem-fracture-module py-rosinstall-generator wsmancli
mofem-minimal-surface-equation py-rospkg wt
mofem-users-modules py-rply wtdbg2
mokutil py-rpy2 wxparaver
molcas py-rq wxpropgrid
molden py-rsa wxwidgets
mongo-c-driver py-rsatoolbox x11perf
mongo-cxx-driver py-rseqc xabclib
mongodb-async-driver py-rtree xapian-core
mono py-ruamel-ordereddict xauth
montage py-ruamel-yaml xbacklight
moosefs py-ruamel-yaml-clib xbiff
moreutils py-rx xbitmaps
mosh py-s3cmd xbraid
mothur py-s3fs xcalc
motif py-s3transfer xcb-demo
motioncor2 py-sacremoses xcb-proto
mount-point-attributes py-saga-python xcb-util
mozjs py-salib xcb-util-cursor
mpark-variant py-sanic xcb-util-errors
mpas-model py-scandir xcb-util-image
mpc py-scientificpython xcb-util-keysyms
mpdecimal py-scikit-build xcb-util-renderutil
mpe2 py-scikit-fmm xcb-util-wm
mpest py-scikit-image xcb-util-xrm
mpfi py-scikit-learn xcfun
mpfr py-scikit-optimize xclip
mpi-bash py-scipy xclipboard
mpibind py-scooby xclock
mpich py-scoop xcmiscproto
mpifileutils py-scp xcmsdb
mpilander py-scs xcompmgr
mpileaks py-seaborn xconsole
mpip py-secretstorage xcursor-themes
mpir py-segmentation-models-pytorch xcursorgen
mpitrampoline py-selenium xdbedizzy
mpix-launch-swift py-semantic-version xdelta
mpl py-semver xditview
mpt py-send2trash xdm
mptensor py-sentencepiece xdmf3
mrbayes py-sentry-sdk xdotool
mrbench py-seqeval xdpyinfo
mrchem py-seriate xdriinfo
mrcpp py-setproctitle xedit
mrnet py-setuptools xerces-c
mrtrix3 py-setuptools-git xeus
mscgen py-setuptools-rust xev
msgpack-c py-setuptools-scm xextproto
mshadow py-setuptools-scm-git-archive xeyes
msmc py-sfepy xf86bigfontproto
msmc2 py-sgp4 xf86dga
mstk py-sh xf86dgaproto
mt-metis py-shapely xf86driproto
multitail py-shiboken xf86miscproto
multitime py-shiboken2 xf86rushproto
multiverso py-shortuuid xf86vidmodeproto
mumax py-shroud xfd
mummer py-shtab xfindproxy
mummer4 py-sierrapy xfontsel
mumps py-simplegeneric xforms
munge py-simplejson xfs
muparser py-simplekml xfsdump
muscle py-singledispatch xfsinfo
muse py-sip xfsprogs
musl py-six xfwp
muster py-slepc4py xgamma
mutationpp py-slurm-pipeline xgboost
mvapich2 py-smart-open xgc
mvapich2-gdr py-smmap xhmm
mvapich2x py-snappy xhost
mxm py-sncosmo xineramaproto
mxml py-sniffio xinit
mxnet py-snowballstemmer xinput
mysql py-snuggs xios
mysqlpp py-sobol-seq xkbcomp
n2p2 py-sonlib xkbdata
nacos py-sortedcollections xkbevd
nag py-sortedcontainers xkbprint
nalu py-soundfile xkbutils
nalu-wind py-soupsieve xkeyboard-config
namd py-spacy xkill
nano py-spacy-models-en-core-web-sm xlc
nanoflann py-spacy-models-en-vectors-web-lg xlf
nanomsg py-sparse xload
nanopb py-spatialist xlogo
nasm py-spatialite xlsatoms
nauty py-spdlog xlsclients
nbdkit py-spectra xlsfonts
ncbi-magicblast py-speech-recognition xmag
ncbi-rmblastn py-spefile xman
ncbi-toolkit py-spgl1 xmessage
nccl py-spglib xmh
nccl-tests py-sphinx xmlf90
nccmp py-sphinx-autodoc-typehints xmlrpc-c
ncdu py-sphinx-bootstrap-theme xmlto
ncftp py-sphinx-copybutton xmodmap
ncio py-sphinx-gallery xmore
ncl py-sphinx-rtd-theme xnnpack
nco py-sphinxautomodapi xorg-cf-files
ncompress py-sphinxcontrib-applehelp xorg-docs
ncurses py-sphinxcontrib-bibtex xorg-gtest
ncview py-sphinxcontrib-devhelp xorg-server
ndiff py-sphinxcontrib-htmlhelp xorg-sgml-doctools
neartree py-sphinxcontrib-issuetracker xphelloworld
nek5000 py-sphinxcontrib-jsmath xplor-nih
nekbone py-sphinxcontrib-mermaid xplsprinters
nekcem py-sphinxcontrib-napoleon xpmem
nekrs py-sphinxcontrib-programoutput xpr
nektar py-sphinxcontrib-qthelp xprehashprinterlist
nektools py-sphinxcontrib-serializinghtml xprop
nemsio py-sphinxcontrib-trio xproperty
nemsiogfs py-sphinxcontrib-websupport xproto
neo4j py-sphobjinv xproxymanagementprotocol
neovim py-spyder xqilla
nest py-spykeutils xrandr
net-snmp py-sqlalchemy xrdb
netcdf-c py-sqlalchemy-stubs xrefresh
netcdf-cxx py-sqlalchemy-utils xrootd
netcdf-cxx4 py-sqlparse xrx
netcdf-fortran py-srsly xsbench
netdata py-sshtunnel xscope
netgauge py-statsmodels xsd
netgen py-stdlib-list xsdk
netkit-ftp py-stestr xsdk-examples
netlib-lapack py-stevedore xset
netlib-scalapack py-stopit xsetmode
netlib-xblas py-storm xsetpointer
netpbm py-stratify xsetroot
netperf py-stsci-distutils xsimd
nettle py-submitit xsm
neuron py-subprocess32 xstdcmap
newt py-subrosa xtensor
nextflow py-svgpathtools xtensor-python
nfft py-svgutils xterm
nfs-ganesha py-svgwrite xtl
nfs-utils py-symengine xtrans
nghttp2 py-symfit xtrap
nginx py-sympy xts
ngmerge py-syned xvidtune
ngmlr py-systemd-python xvinfo
ngspice py-tables xwd
nicstat py-tabulate xwidgets
nim py-tap-py xwininfo
ninja py-tatsu xwud
ninja-fortran py-tblib xxd-standalone
nix py-templateflow xxhash
njet py-tempora xyce
nlcglib py-tenacity xz
nlohmann-json py-tensorboard yajl
nlohmann-json-schema-validator py-tensorboard-plugin-wit yambo
nlopt py-tensorboardx yaml-cpp
nmap py-tensorflow yara
nn-c py-tensorflow-estimator yarn
nnpack py-tensorflow-hub yasm
nnvm py-tensorflow-probability ycsb
node-js py-termcolor yoda
notmuch py-terminado yorick
npb py-terminaltables z-checker
npm py-testfixtures z3
npth py-testinfra zabbix
nrm py-testpath zfp
ns-3-dev py-testrepository zfs
nseg py-testresources zig
nsimd py-testscenarios zip
nspr py-testtools zipkin
nss py-tetoolkit zlib
ntirpc py-text-unidecode zlib-ng
ntpoly py-textblob zoltan
numactl py-texttable zookeeper
numamma py-tfdlpack zookeeper-benchmark
numap py-theano zsh
numdiff py-thinc zstd
nut py-thirdorder zstr
nvdimmsim py-threadpoolctl zziplib
nvhpc py-tifffile None

3dtk

Homepage:
Spack package:
Versions:
trunk, 1.2
Build Dependencies:
cmake, ninja, boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Link Dependencies:
boost, suite-sparse, zlib, libpng, eigen, cgal, gl, glew, freeglut, opencv, cuda
Description:
The 3D Toolkit provides algorithms and methods to process 3D point clouds. It includes automatic high-accurate registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc. Several file formats for the point clouds are natively supported, new formats can be implemented easily.

3proxy

Homepage:
Spack package:
Versions:
0.8.13, 0.8.12, 0.8.11
Build Dependencies:
autoconf, automake, libtool, m4
Description:
3proxy - tiny free proxy server

abduco

Homepage:
Spack package:
Versions:
0.6, 0.5, 0.4
Description:
abduco provides session management i.e. it allows programs to be run independently from its controlling terminal. That is programs can be detached - run in the background - and then later reattached. Together with dvtm it provides a simpler and cleaner alternative to tmux or screen.

abi-compliance-checker

Homepage:
Spack package:
Versions:
2.3, 2.2, 2.1
Build Dependencies:
abi-dumper, perl, binutils, universal-ctags
Link Dependencies:
abi-dumper, perl, binutils, universal-ctags
Description:
A tool for checking backward compatibility of a C/C++ library API.

abi-dumper

Homepage:
Spack package:
Versions:
1.2, 1.1, 1.0, 0.99.19
Build Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Link Dependencies:
perl, elfutils, binutils, universal-ctags, vtable-dumper
Description:
ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug info.

abinit

Homepage:
Spack package:
Versions:
9.4.2, 8.10.3, 8.10.2, 8.8.2, 8.6.3, 8.2.2, 8.0.8b
Build Dependencies:
gnuconfig, atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Link Dependencies:
atompaw, blas, lapack, mpi, scalapack, fftw-api, netcdf-fortran, netcdf-c, hdf5, wannier90, libxc, libxml2
Description:
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors, based on Density-Functional Perturbation Theory, and many more properties. Excited states can be computed within the Many-Body Perturbation Theory (the GW approximation and the Bethe-Salpeter equation), and Time- Dependent Density Functional Theory (for molecules). In addition to the main ABINIT code, different utility programs are provided.

abseil-cpp

Homepage:
Spack package:
Versions:
20210324.2, 20210324.1, 20210324.0, 20200923.3, 20200923.2, 20200923.1, 20200225.2, 20200225.1, 20190808, 20181200, 20180600
Build Dependencies:
cmake
Description:
Abseil Common Libraries (C++)

abyss

Homepage:
Spack package:
Versions:
2.3.1, 2.3.0, 2.2.5, 2.1.4, 2.0.2, 1.5.2
Build Dependencies:
gnuconfig, autoconf, automake, mpi, boost, sparsehash, sqlite, libtool
Link Dependencies:
mpi, boost, sparsehash, sqlite, libtool
Run Dependencies:
bwa
Description:
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size.

accfft

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda, cmake, fftw, parallel-netcdf
Link Dependencies:
cuda, fftw, parallel-netcdf
Description:
AccFFT extends existing FFT libraries for CUDA-enabled Graphics Processing Units (GPUs) to distributed memory clusters

acct

Homepage:
Spack package:
Versions:
6.6.4, 6.6.3, 6.6.2
Build Dependencies:
gnuconfig
Description:
Utilities for monitoring process activities.

accumulo

Homepage:
Spack package:
Versions:
2.0.1, 2.0.0, 1.9.3, 1.9.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.

ace

Homepage:
Spack package:
Versions:
6.5.12, 6.5.6, 6.5.1, 6.5.0
Description:
ACE is an open-source framework that provides many components and patterns for developing high-performance, distributed real-time and embedded systems. ACE provides powerful, yet efficient abstractions for sockets, demultiplexing loops, threads, synchronization primitives.

ack

Homepage:
Spack package:
Versions:
2.22, 2.18, 2.16, 2.14
Build Dependencies:
perl
Link Dependencies:
perl
Description:
ack 2.14 is a tool like grep, optimized for programmers. Designed for programmers with large heterogeneous trees of source code, ack is written purely in portable Perl 5 and takes advantage of the power of Perl's regular expressions.

acl

Homepage:
Spack package:
Versions:
2.2.53, 2.2.52, 2.2.51, 2.2.50, 2.2.49, 2.2.48
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, attr, gettext
Link Dependencies:
attr, gettext
Description:
Commands for Manipulating POSIX Access Control Lists.

acpica-tools

Homepage:
Spack package:
Versions:
20200528, 20200430
Build Dependencies:
flex, bison
Description:
Debian packaging for the ACPICA user space tools

acpid

Homepage:
Spack package:
Versions:
2.0.28, 2.0.27, 2.0.26, 2.0.25, 2.0.24
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Description:
ACPID used to try to handle events internally. Rather than try to climb an ever-growing mountain, ACPID now lets YOU define what events to handle. Any event that publishes itself to /proc/acpi/event can be handled. ACPID reads a set of configuration files which define event->action pairs. This is how you make it do stuff. See the man page for details.

activeharmony

Homepage:
Spack package:
Versions:
4.6.0, 4.5
Description:
Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).

activemq

Homepage:
Spack package:
Versions:
5.14.0
Description:
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementation.

acts

Homepage:
Spack package:
Versions:
main, master, 13.0.0, 12.0.1, 12.0.0, 11.0.0, 10.0.0, 9.02.0, 9.01.0, 9.00.1, 9.00.0, 8.03.0, 8.02.0, 8.01.0, 8.00.0, 7.00.0, 6.00.0, 5.00.0, 4.01.0, 4.00.0, 3.00.0, 2.00.0, 1.02.1, 1.02.0, 1.01.0, 1.00.0, 0.32.0, 0.31.0, 0.30.0, 0.29.0, 0.28.0, 0.27.1, 0.27.0, 0.26.0, 0.25.2, 0.25.1, 0.25.0, 0.24.0, 0.23.0, 0.22.1, 0.22.0, 0.21.0, 0.20.0, 0.19.0, 0.18.0, 0.17.0, 0.16.0, 0.15.0, 0.14.0, 0.13.0, 0.12.1, 0.12.0, 0.11.1, 0.11.0, 0.10.5, 0.10.4, 0.10.3, 0.10.2, 0.10.1, 0.10.0, 0.09.5, 0.09.4, 0.09.3, 0.09.2, 0.09.1, 0.09.0, 0.08.2, 0.08.1, 0.08.0
Build Dependencies:
cuda, cmake, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Link Dependencies:
cuda, boost, dd4hep, eigen, geant4, hepmc3, heppdt, intel-tbb, nlohmann-json, pythia8, root
Description:
A Common Tracking Software (Acts) This project contains an experiment- independent set of track reconstruction tools. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector. The description of the tracking detector's geometry is optimized for efficient navigation and quick extrapolation of tracks. Converters for several common geometry description languages exist. Having a highly performant, yet largely customizable implementation of track reconstruction algorithms was a primary objective for the design of this toolset. Additionally, the applicability to real-life HEP experiments plays major role in the development process. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. Key features of this project include: tracking geometry description which can be constructed from TGeo, DD4Hep, or GDML input, simple and efficient event data model, performant and highly flexible algorithms for track propagation and fitting, basic seed finding algorithms.

addrwatch

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, libevent, libpcap
Link Dependencies:
libevent, libpcap
Description:
A tool similar to arpwatch for IPv4/IPv6 and ethernet address pairing monitoring.

adept-utils

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, boost, mpi
Link Dependencies:
boost, mpi
Description:
Utility libraries for LLNL performance tools.

adf

Homepage:
Spack package:
Versions:
2017.113
Description:
Amsterdam Density Functional (ADF) is a program for first-principles electronic structure calculations that makes use of density functional theory.

adiak

Homepage:
Spack package:
Versions:
0.3.0-alpha, 0.2.1, 0.1.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
Adiak collects metadata about HPC application runs and provides it to tools.

adios

Homepage:
Spack package:
Versions:
develop, 1.13.1, 1.13.0, 1.12.0, 1.11.1, 1.11.0, 1.10.0, 1.9.0
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, python, mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Link Dependencies:
mpi, zlib, bzip2, szip, sz, zfp, lz4, c-blosc, hdf5, netcdf-c, libevpath, dataspaces
Description:
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

adios2

Homepage:
Spack package:
Versions:
master, 2.7.1, 2.7.0, 2.6.0, 2.5.0, 2.4.0, 2.3.1
Build Dependencies:
cmake, pkgconfig, libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz, python, py-numpy, py-mpi4py
Link Dependencies:
libffi, libfabric, mpi, libzmq, dataspaces, hdf5, c-blosc, bzip2, libpng, zfp, sz
Run Dependencies:
python, py-numpy, py-mpi4py
Test Dependencies:
python
Description:
The Adaptable Input Output System version 2, developed in the Exascale Computing Program

adlbx

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.9.2, 0.9.1
Build Dependencies:
gnuconfig, exmcutils, autoconf, automake, libtool, m4, mpi
Link Dependencies:
exmcutils, mpi
Description:
ADLB/X: Master-worker library + work stealing and data dependencies

admixtools

Homepage:
Spack package:
Versions:
7.0.2, 7.0.1, 7.0, 6.0, 5.1, 5.0, 1.0.1, 1.0
Build Dependencies:
lapack, gsl
Link Dependencies:
lapack, gsl
Description:
The ADMIXTOOLS package implements 5 methods described in Patterson et al. (2012) Ancient Admixture in Human History. Details of the methods and algorithm can be found in this paper..

adms

Homepage:
Spack package:
Versions:
master, 2.3.7
Build Dependencies:
gnuconfig, bison, flex, perl-xml-libxml
Description:
ADMS is a code generator that converts electrical compact device models specified in high-level description language into ready-to-compile c code for the API of spice simulators.

adol-c

Homepage:
Spack package:
Versions:
master, 2.7.2, 2.7.1, 2.7.0, 2.6.3, 2.6.2, 2.6.1, 2.6.0, 2.5.2, 2.5.1, 2.5.0
Build Dependencies:
gnuconfig, automake, autoconf, libtool, m4, boost
Link Dependencies:
boost
Description:
A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.

advancecomp

Homepage:
Spack package:
Versions:
2.1, 2.0, 1.23, 1.22
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Description:
AdvanceCOMP contains recompression utilities for your .zip archives, .png images, .mng video clips and .gz files.

adwaita-icon-theme

Homepage:
Spack package:
Versions:
3.38.0
Build Dependencies:
gnuconfig, gdk-pixbuf, librsvg
Description:
Mostly private use system icons.

aegean

Homepage:
Spack package:
Versions:
0.15.2
Build Dependencies:
genometools
Link Dependencies:
genometools
Description:
The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures.

aeskeyfind

Homepage:
Spack package:
Versions:
master
Description:
This program illustrates automatic techniques for locating 128-bit and 256-bit AES keys in a captured memory image.

aespipe

Homepage:
Spack package:
Versions:
2.4f, 2.4e, 2.4d, 2.4c, 2.4b, 2.3e, 2.3d
Build Dependencies:
gnuconfig
Description:
aespipe program is AES encrypting or decrypting pipe. It reads from standard input and writes to standard output.

agrep

Homepage:
Spack package:
Versions:
3.41
Description:
AGREP - an approximate GREP. Fast searching files for a string or regular expression, with approximate matching capabilities and user- definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona.

aida

Homepage:
Spack package:
Versions:
3.2.1
Description:
Abstract Interfaces for Data Analysis

akantu

Homepage:
Spack package:
Versions:
master, 3.0.0
Build Dependencies:
cmake, boost, lapack, python, py-numpy, py-scipy, py-pybind11, mumps, netlib-scalapack, petsc, mpi, scotch
Link Dependencies:
boost, lapack, mumps, netlib-scalapack, petsc, mpi, scotch
Run Dependencies:
python, py-numpy, py-scipy, py-pybind11
Description:
Akantu means a little element in Kinyarwanda, a Bantu language. From now on it is also an opensource object-oriented Finite Element library which has the ambition to be generic and efficient.

alan

Homepage:
Spack package:
Versions:
2.1.1
Description:
Alignment viewer for linux terminal

albany

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, mpi, trilinos
Link Dependencies:
mpi, trilinos
Description:
Albany is an implicit, unstructured grid, finite element code for the solution and analysis of multiphysics problems. The Albany repository on the GitHub site contains hundreds of regression tests and examples that demonstrate the code's capabilities on a wide variety of problems including fluid mechanics, solid mechanics (elasticity and plasticity), ice-sheet flow, quantum device modeling, and many other applications.

albert

Homepage:
Spack package:
Versions:
4.0a_opt4, 4.0a
Build Dependencies:
readline
Link Dependencies:
readline
Description:
Albert is an interactive program to assist the specialist in the study of nonassociative algebra.

alembic

Homepage:
Spack package:
Versions:
1.7.16
Build Dependencies:
cmake, openexr, hdf5, boost, zlib, py-ilmbase
Link Dependencies:
openexr, hdf5, boost, zlib, py-ilmbase
Description:
Alembic is an open computer graphics interchange framework. Alembic distills complex, animated scenes into a non-procedural, application- independent set of baked geometric results.

alglib

Homepage:
Spack package:
Versions:
3.11.0
Description:
ALGLIB is a cross-platform numerical analysis and data processing library.

allpaths-lg

Homepage:
Spack package:
Versions:
52488
Build Dependencies:
gnuconfig
Description:
ALLPATHS-LG is our original short read assembler and it works on both small and large (mammalian size) genomes.

alluxio

Homepage:
Spack package:
Versions:
2.2.1, 2.2.0
Run Dependencies:
java
Description:
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap between computation frameworks and storage systems, enabling computation applications to connect to numerous storage systems through a common interface.

alpaka

Homepage:
Spack package:
Versions:
develop, 0.7.0, 0.6.0, 0.5.0, 0.4.0
Build Dependencies:
cuda, cmake, boost
Link Dependencies:
cuda, cmake, boost
Description:
Abstraction Library for Parallel Kernel Acceleration.

alpgen

Homepage:
Spack package:
Versions:
2.1.4
Build Dependencies:
cmake
Description:
A collection of codes for the generation of multi-parton processes in hadronic collisions.

alps

Homepage:
Spack package:
Versions:
2.3.0
Build Dependencies:
cmake, boost, fftw, hdf5, lapack, python, py-numpy, py-scipy, py-matplotlib
Link Dependencies:
boost, fftw, hdf5, lapack, python, py-numpy, py-scipy
Run Dependencies:
python, py-numpy, py-scipy, py-matplotlib
Description:
Algorithms for Physics Simulations Tags: Condensed Matter Physics, Computational Physics

alquimia

Homepage:
Spack package:
Versions:
develop, xsdk-0.6.0, xsdk-0.5.0, xsdk-0.4.0, xsdk-0.3.0
Build Dependencies:
cmake, mpi, hdf5, pflotran, petsc
Link Dependencies:
mpi, hdf5, pflotran, petsc
Description:
Alquimia is an interface that exposes the capabilities of mature geochemistry codes such as CrunchFlow and PFLOTRAN

alsa-lib

Homepage:
Spack package:
Versions:
1.2.3.2, 1.2.2, 1.1.4.1
Build Dependencies:
gnuconfig
Link Dependencies:
python
Run Dependencies:
python
Description:
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. alsa-lib contains the user space library that developers compile ALSA applications against.

aluminum

Homepage:
Spack package:
Versions:
master, 1.0.0, 0.7.0, 0.6.0, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.2.1-1, 0.2.1, 0.2, 0.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, nccl, hwloc, cub, hipcub, ninja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, nccl, hwloc, cub, hipcub
Description:
Aluminum provides a generic interface to high-performance communication libraries, with a focus on allreduce algorithms. Blocking and non- blocking algorithms and GPU-aware algorithms are supported. Aluminum also contains custom implementations of select algorithms to optimize for certain situations.

ambari

Homepage:
Spack package:
Versions:
2.7.5, 2.7.4, 2.7.3, 2.7.1
Build Dependencies:
python, py-setuptools, py-coilmq
Run Dependencies:
python, py-coilmq
Test Dependencies:
py-mock
Description:
Apache Ambari is a tool for provisioning, managing, and monitoring Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and a browser-based management interface.

amber

Homepage:
Spack package:
Versions:
20, 18, 16
Build Dependencies:
cuda, zlib, bzip2, flex, bison, netcdf-fortran, mpi
Link Dependencies:
cuda, zlib, bzip2, netcdf-fortran, mpi
Description:
Amber is a suite of biomolecular simulation programs together with Amber tools. A manual download is required for Ambers. Spack will search your current directory for the download files. Alternatively, add the files to a mirror so that Spack can find them. For instructions on how to set up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html Note: Only certain versions of ambertools are compatible with amber. Only the latter version of ambertools for each amber version is supported.

amdblis

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
AMD Optimized BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations.

amdfftw

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
gnuconfig, mpi, llvm-openmp, texinfo
Link Dependencies:
mpi, llvm-openmp, texinfo
Description:
FFTW (AMD Optimized version) is a comprehensive collection of fast C routines for computing the Discrete Fourier Transform (DFT) and various special cases thereof. It is an open-source implementation of the Fast Fourier transform algorithm. It can compute transforms of real and complex-values arrays of arbitrary size and dimension. AMD Optimized FFTW is the optimized FFTW implementation targeted for AMD CPUs. For single precision build, please use precision value as float. Example : spack install amdfftw precision=float

amdlibflame

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
gnuconfig, blas, python
Link Dependencies:
blas
Description:
libFLAME (AMD Optimized version) is a portable library for dense matrix computations, providing much of the functionality present in Linear Algebra Package (LAPACK). It includes a compatibility layer, FLAPACK, which includes complete LAPACK implementation. The library provides scientific and numerical computing communities with a modern, high- performance dense linear algebra library that is extensible, easy to use, and available under an open source license. libFLAME is a C-only implementation and does not depend on any external FORTRAN libraries including LAPACK. There is an optional backward compatibility layer, lapack2flame that maps LAPACK routine invocations to their corresponding native C implementations in libFLAME. This allows legacy applications to start taking advantage of libFLAME with virtually no changes to their source code. In combination with BLIS library which includes optimizations for the AMD EPYC processor family, libFLAME enables running high performing LAPACK functionalities on AMD platform.

amdlibm

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
scons, python
Link Dependencies:
mpfr
Run Dependencies:
python
Description:
AMD LibM is a software library containing a collection of basic math functions optimized for x86-64 processor-based machines. It provides many routines from the list of standard C99 math functions. Applications can link into AMD LibM library and invoke math functions instead of compiler's math functions for better accuracy and performance.

amdscalapack

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
cmake, mpi, lapack, blas
Link Dependencies:
mpi, lapack, blas
Description:
ScaLAPACK is a library of high-performance linear algebra routines for parallel distributed memory machines. It depends on external libraries including BLAS and LAPACK for Linear Algebra computations. AMD's optimized version of ScaLAPACK enables using BLIS and LibFLAME library that have optimized dense matrix functions and solvers for AMD EPYC processor family CPUs.

amg

Homepage:
Spack package:
Versions:
develop, 1.2, 1.1, 1.0
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems.

amg2013

Homepage:
Spack package:
Versions:
master
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
AMG2013 is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. It has been derived directly from the BoomerAMG solver in the hypre library, a large linear solver library that is being developed in the Center for Applied Scientific Computing (CASC) at LLNL.

amgx

Homepage:
Spack package:
Versions:
2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cuda, cmake, mpi, mkl, magma
Link Dependencies:
cuda, mpi, mkl, magma
Description:
AmgX provides a simple path to accelerated core solver technology on NVIDIA GPUs. AmgX provides up to 10x acceleration to the computationally intense linear solver portion of simulations, and is especially well suited for implicit unstructured methods. It is a high performance, state-of-the-art library and includes a flexible solver composition system that allows a user to easily construct complex nested solvers and preconditioners.

aml

Homepage:
Spack package:
Versions:
master, 0.1.0
Build Dependencies:
gnuconfig, numactl, m4, autoconf, automake, libtool
Link Dependencies:
numactl
Description:
AML: Building Blocks for Memory Management.

amp

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Link Dependencies:
blas, lapack, boost, hdf5, hypre, libmesh, netcdf-c, petsc, silo, sundials, trilinos, zlib, mpi
Description:
The Advanced Multi-Physics (AMP) package. The Advanced Multi-Physics (AMP) package is an open source parallel object-oriented computational framework that is designed with single and multi-domain multi-physics applications in mind.

ampl

Homepage:
Spack package:
Versions:
20210226, 20190529
Description:
AMPL integrates a modeling language for describing optimization data, variables, objectives, and constraints; a command language for debugging models and analyzing results; and a scripting language for manipulating data and implementing optimization strategies.

ampliconnoise

Homepage:
Spack package:
Versions:
1.29
Build Dependencies:
mpi, gsl
Link Dependencies:
mpi, gsl
Description:
AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons.

amr-wind

Homepage:
Spack package:
Versions:
main
Build Dependencies:
cuda, cmake, mpi, amrex, hypre, netcdf-c, masa, openfast
Link Dependencies:
cuda, mpi, amrex, hypre, netcdf-c, masa, openfast
Description:
AMR-Wind is a massively parallel, block-structured adaptive-mesh, incompressible flow sover for wind turbine and wind farm simulations.

amrex

Homepage:
Spack package:
Versions:
develop, 21.10, 21.09, 21.08, 21.07, 21.06, 21.05, 21.04, 21.03, 21.02, 21.01, 20.12, 20.11, 20.10, 20.09, 20.08, 20.07, 20.06, 20.05, 20.04, 20.03, 20.02, 20.01, 19.10, 19.08, 18.10.1, 18.10, 18.09.1
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, mpi, sundials, python, hdf5, rocrand, rocprim
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, mpi, sundials, hdf5, hypre, petsc
Description:
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.

amrvis

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gmake, mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Link Dependencies:
mpi, libsm, libice, libxpm, libx11, libxt, libxext, motif, flex, bison
Description:
Amrvis is a visualization package specifically designed to read and display output and profiling data from codes built on the AMReX framework.

anaconda2

Homepage:
Spack package:
Versions:
2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

anaconda3

Homepage:
Spack package:
Versions:
2021.05, 2020.11, 2020.07, 2020.02, 2019.10, 2019.07, 2019.03, 2018.12, 5.3.1, 5.3.0, 5.2.0, 5.1.0, 5.0.1, 5.0.0.1, 5.0.0, 4.4.0, 4.3.1, 4.3.0, 4.2.0, 4.1.1, 4.1.0, 4.0.0, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Description:
Anaconda is a free and open-source distribution of the Python and R programming languages for scientific computing, that aims to simplify package management and deployment. Package versions are managed by the package management system conda.

andi

Homepage:
Spack package:
Versions:
0.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gsl, libdivsufsort
Link Dependencies:
gsl, libdivsufsort
Description:
andi is used for for estimating the evolutionary distance between closely related genomes.

angsd

Homepage:
Spack package:
Versions:
0.935, 0.933, 0.921, 0.919
Build Dependencies:
htslib, zlib, lzma, curl
Link Dependencies:
htslib, zlib, lzma, curl
Run Dependencies:
r
Description:
Angsd is a program for analysing NGS data. The software can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. This is especially useful for low and medium depth data.

ant

Homepage:
Spack package:
Versions:
1.10.7, 1.10.6, 1.10.5, 1.10.4, 1.10.3, 1.10.2, 1.10.1, 1.10.0, 1.9.9, 1.9.8, 1.9.7, 1.9.6
Build Dependencies:
java
Link Dependencies:
java
Description:
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other

antimony

Homepage:
Spack package:
Versions:
2.8, 2.7, 2.6, 2.5, 2.4, 2.2, 2.0
Build Dependencies:
cmake, sbml, swig, qt, python
Link Dependencies:
sbml, swig, qt, python
Description:
Human readable language for modifying sbml

antlr

Homepage:
Spack package:
Versions:
2.7.7
Build Dependencies:
gnuconfig, python, java
Run Dependencies:
python, java
Description:
ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files. It's widely used to build languages, tools, and frameworks. From a grammar, ANTLR generates a parser that can build and walk parse trees.

ants

Homepage:
Spack package:
Versions:
2.3.5, 2.2.0
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
ANTs extracts information from complex datasets that include imaging. Paired with ANTsR (answer), ANTs is useful for managing, interpreting and visualizing multidimensional data. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute.

aocc

Homepage:
Spack package:
Versions:
3.1.0, 3.0.0, 2.3.0, 2.2.0
Build Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Link Dependencies:
libxml2, zlib, ncurses, libtool, texinfo
Description:
The AOCC compiler system is a high performance, production quality code generation tool. The AOCC environment provides various options to developers when building and optimizing C, C++, and Fortran applications targeting 32-bit and 64-bit Linux platforms. The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. Please install only if you agree to terms and conditions depicted under : https://developer.amd.com/wordpress/media/files/AOCC_EULA.pdf Example for installation: 'spack install aocc +license-agreed'

aocl-sparse

Homepage:
Spack package:
Versions:
3.0, 2.2
Build Dependencies:
cmake, boost
Link Dependencies:
boost
Description:
AOCL-Sparse is a library that contains basic linear algebra subroutines for sparse matrices and vectors optimized for AMD EPYC family of processors. It is designed to be used with C and C++. Current functionality of sparse library supports SPMV function with CSR and ELLPACK formats.

aoflagger

Homepage:
Spack package:
Versions:
2.10.0
Build Dependencies:
cmake, casacore, fftw, boost, libxml2, lapack, cfitsio
Link Dependencies:
casacore, fftw, boost, libxml2, lapack, cfitsio
Description:
RFI detector and quality analysis for astronomical radio observations.

aom

Homepage:
Spack package:
Versions:
v1.0.0-errata1
Build Dependencies:
cmake, yasm
Link Dependencies:
yasm
Description:
Alliance for Open Media AOM AV1 Codec Library

aomp

Homepage:
Spack package:
Versions:
3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, python, py-setuptools, mesa18, py-pip, py-wheel, perl-data-dumper, awk, elfutils, libffi, hsakmt-roct, comgr, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Link Dependencies:
mesa18, elfutils, libffi, hsakmt-roct, hsa-rocr-dev, rocm-device-libs, hip, hip-rocclr, rocm-gdb
Run Dependencies:
py-wheel
Description:
llvm openmp compiler from AMD.

apachetop

Homepage:
Spack package:
Versions:
0.19.7, 0.18.4, 0.17.4, 0.15.6
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, readline
Link Dependencies:
readline
Description:
ApacheTop watches a logfile generated by Apache (in standard common or combined logformat, and generates human-parsable output in realtime.) See the INSTALL file for ./configure options (there's a few newly added since v0.11)

apcomp

Homepage:
Spack package:
Versions:
master, 0.0.3, 0.0.2, 0.0.1
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
A multi use-case image compositor

ape

Homepage:
Spack package:
Versions:
2.2.1
Build Dependencies:
gsl, libxc
Link Dependencies:
gsl, libxc
Description:
A tool for generating atomic pseudopotentials within a Density- Functional Theory framework

aperture-photometry

Homepage:
Spack package:
Versions:
2.8.4, 2.8.2
Build Dependencies:
java
Link Dependencies:
java
Description:
Aperture Photometry Tool APT is software for astronomical research

apex

Homepage:
Spack package:
Versions:
develop, master, 2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0, 2.2.0
Build Dependencies:
cmake, zlib, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Link Dependencies:
zlib, binutils, activeharmony, otf2, mpi, gperftools, jemalloc, lm-sensors, papi, cuda, hip, roctracer-dev, rocm-smi-lib, boost
Description:
Autonomic Performance Environment for eXascale (APEX).

apfel

Homepage:
Spack package:
Versions:
3.0.4
Build Dependencies:
gnuconfig, swig, python, lhapdf
Link Dependencies:
swig
Run Dependencies:
python, lhapdf
Description:
APFEL is a library able to perform DGLAP evolution up to NNLO in QCD and to NLO in QED, both with pole and MSbar masses. The coupled DGLAP QCD+QED evolution equations are solved in x-space by means of higher order interpolations and Runge-Kutta techniques.

apple-libunwind

Homepage:
Spack package:
Description:
Placeholder package for Apple's analogue to non-GNU libunwind

apple-libuuid

Homepage:
Spack package:
Versions:
1353.100.2
Description:
Placeholder package for Apple's analogue to non-GNU libuuid

applewmproto

Homepage:
Spack package:
Versions:
1.4.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Apple Rootless Window Management Extension. This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.

appres

Homepage:
Spack package:
Versions:
1.0.4
Build Dependencies:
gnuconfig, libx11, libxt, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxt, xproto
Description:
The appres program prints the resources seen by an application (or subhierarchy of an application) with the specified class and instance names. It can be used to determine which resources a particular program will load.

apr

Homepage:
Spack package:
Versions:
1.7.0, 1.6.2, 1.5.2
Build Dependencies:
gnuconfig
Link Dependencies:
uuid
Description:
Apache portable runtime.

apr-util

Homepage:
Spack package:
Versions:
1.6.1, 1.6.0, 1.5.4
Build Dependencies:
gnuconfig, apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Link Dependencies:
apr, expat, iconv, openssl, gdbm, postgresql, sqlite, unixodbc
Description:
Apache Portable Runtime Utility

aragorn

Homepage:
Spack package:
Versions:
1.2.38, 1.2.36
Description:
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

arbor

Homepage:
Spack package:
Versions:
master, 0.5.2, 0.5
Build Dependencies:
cuda, cmake, nlohmann-json, libxml2, mpi, py-mpi4py, python, py-numpy, py-pybind11, py-sphinx, py-svgwrite
Link Dependencies:
cuda, nlohmann-json, libxml2, mpi
Run Dependencies:
py-mpi4py, python, py-numpy, py-pybind11
Description:
Arbor is a high-performance library for computational neuroscience simulations.

arborx

Homepage:
Spack package:
Versions:
master, 1.1, 1.0, 0.9-beta
Build Dependencies:
cmake, mpi, kokkos, trilinos
Link Dependencies:
mpi, kokkos, trilinos
Description:
ArborX is a performance-portable library for geometric search

archer

Homepage:
Spack package:
Versions:
2.0.0, 1.0.0
Build Dependencies:
cmake, llvm, ninja, llvm-openmp-ompt
Link Dependencies:
llvm, llvm-openmp-ompt
Description:
ARCHER, a data race detection tool for large OpenMP applications.

argobots

Homepage:
Spack package:
Versions:
main, 1.1, 1.0.1, 1.0
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, valgrind, libunwind
Link Dependencies:
valgrind, libunwind
Description:
Argobots, which was developed as a part of the Argo project, is a lightweight runtime system that supports integrated computation and data movement with massive concurrency. It will directly leverage the lowest- level constructs in the hardware and OS: lightweight notification mechanisms, data movement engines, memory mapping, and data placement strategies. It consists of an execution model and a memory model.

argon2

Homepage:
Spack package:
Versions:
20190702, 20171227, 20161029
Description:
Argon2 is a password-hashing function that summarizes the state of the art in the design of memory-hard functions and can be used to hash passwords for credential storage, key derivation, or other applications.

argp-standalone

Homepage:
Spack package:
Versions:
1.3
Build Dependencies:
gnuconfig
Description:
Standalone version of the argp interface from glibc for parsing unix- style arguments.

args

Homepage:
Spack package:
Versions:
6.2.3, 6.2.2, 6.2.1
Build Dependencies:
cmake
Description:
A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API).

argtable

Homepage:
Spack package:
Versions:
2-13
Build Dependencies:
gnuconfig
Description:
Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.

aria2

Homepage:
Spack package:
Versions:
1.35.0, 1.34.0
Build Dependencies:
gnuconfig, libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Link Dependencies:
libxml2, libssh2, libgcrypt, zlib, c-ares, sqlite
Description:
An ultra fast download utility

arm

Homepage:
Spack package:
Versions:
21.0
Description:
Arm Compiler combines the optimized tools and libraries from Arm with a modern LLVM-based compiler framework.

arm-forge

Homepage:
Spack package:
Versions:
21.1, 21.0.2, 21.0
Build Dependencies:
python
Description:
Arm Forge is the complete toolsuite for software development - with everything needed to debug, profile, optimize, edit and build C, C++ and Fortran applications on Linux for high performance - from single threads through to complex parallel HPC codes with MPI, OpenMP, threads or CUDA.

armadillo

Homepage:
Spack package:
Versions:
10.5.0, 9.800.3, 8.100.1, 7.950.1
Build Dependencies:
cmake, arpack-ng, blas, lapack, superlu, hdf5
Link Dependencies:
arpack-ng, blas, lapack, superlu, hdf5
Description:
Armadillo is a high quality linear algebra library (matrix maths) for the C++ language, aiming towards a good balance between speed and ease of use.

arpack-ng

Homepage:
Spack package:
Versions:
develop, 3.8.0, 3.7.0, 3.6.3, 3.6.2, 3.6.0, 3.5.0, 3.4.0, 3.3.0
Build Dependencies:
blas, lapack, automake, autoconf, libtool, cmake, mpi
Link Dependencies:
blas, lapack, mpi
Description:
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Important Features: * Reverse Communication Interface. * Single and Double Precision Real Arithmetic Versions for Symmetric, Non-symmetric, Standard or Generalized Problems. * Single and Double Precision Complex Arithmetic Versions for Standard or Generalized Problems. * Routines for Banded Matrices - Standard or Generalized Problems. * Routines for The Singular Value Decomposition. * Example driver routines that may be used as templates to implement numerous Shift-Invert strategies for all problem types, data types and precision. This project is a joint project between Debian, Octave and Scilab in order to provide a common and maintained version of arpack. Indeed, no single release has been published by Rice university for the last few years and since many software (Octave, Scilab, R, Matlab...) forked it and implemented their own modifications, arpack-ng aims to tackle this by providing a common repository and maintained versions. arpack-ng is replacing arpack almost everywhere.

arrayfire

Homepage:
Spack package:
Versions:
master, 3.7.3, 3.7.2, 3.7.0
Build Dependencies:
cuda, cmake, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Link Dependencies:
cuda, boost, fftw-api, blas, cudnn, opencl, fontconfig, glfw
Description:
ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming more accessible.

arrow

Homepage:
Spack package:
Versions:
4.0.1, 3.0.0, 0.17.1, 0.15.1, 0.15.0, 0.14.1, 0.12.1, 0.11.0, 0.9.0, 0.8.0
Build Dependencies:
cuda, cmake, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Link Dependencies:
cuda, boost, flatbuffers, python, py-numpy, rapidjson, snappy, zlib, zstd, thrift, orc
Description:
A cross-language development platform for in-memory data. This package contains the C++ bindings.

asagi

Homepage:
Spack package:
Versions:
1.0.1, 1.0
Build Dependencies:
cmake, mpi, netcdf-c, numactl
Link Dependencies:
mpi, netcdf-c, numactl
Description:
a pArallel Server for Adaptive GeoInformation.

ascent

Homepage:
Spack package:
Versions:
develop, 0.7.1, 0.7.0, 0.6.0
Build Dependencies:
cuda, cmake, conduit, python, py-numpy, py-pip, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, fides, dray, py-sphinx, py-sphinx-rtd-theme
Link Dependencies:
cuda, conduit, python, mpi, py-mpi4py, babelflow, parallelmergetree, vtk-h, mfem, fides, dray
Run Dependencies:
python, py-numpy, py-pip
Description:
Ascent is an open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.

asciidoc

Homepage:
Spack package:
Versions:
master, 9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 8.6.10, 8.6.9
Build Dependencies:
gnuconfig, libxml2, libxslt, docbook-xml, docbook-xsl, python
Run Dependencies:
libxml2, libxslt, docbook-xml, docbook-xsl, python
Description:
A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.

asciidoc-py3

Homepage:
Spack package:
Versions:
9.1.0, 9.0.5, 9.0.4, 9.0.3, 9.0.2
Build Dependencies:
gnuconfig, python, libxml2, libxslt, docbook-xml, docbook-xsl
Run Dependencies:
python, libxml2, libxslt, docbook-xml, docbook-xsl
Description:
Python 3 port of Asciidoc Python. AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page.

asdcplib

Homepage:
Spack package:
Versions:
2_10_35, 2_10_34, 2_10_33, 2_10_32
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, openssl
Link Dependencies:
openssl
Description:
AS-DCP and AS-02 File Access Library.

asdf-cxx

Homepage:
Spack package:
Versions:
7.2.1, 7.2.0, 7.1.0, 7.0.0, 6.3.0, 6.0.0, 5.0.0, 4.0.1, 3.1.0, 3.0.0, 2.6.1, 2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.1, 2.2.1, 2.1.1, 2.1.0, 1.1.0, 1.0.0
Build Dependencies:
cmake, bzip2, openssl, py-numpy, python, swig, yaml-cpp, zlib
Link Dependencies:
bzip2, openssl, yaml-cpp, zlib
Run Dependencies:
py-numpy, python
Description:
ASDF - Advanced Scientific Data Format, a C++ implementation

asio

Homepage:
Spack package:
Versions:
1.20.0, 1.19.2, 1.19.1, 1.19.0, 1.18.2
Build Dependencies:
gnuconfig, autoconf, automake, m4, libtool, boost
Link Dependencies:
boost
Description:
C++ library for network and low-level I/O programming.

aspa

Homepage:
Spack package:
Versions:
master
Build Dependencies:
lapack, blas, mpi, hdf5
Link Dependencies:
lapack, blas, mpi, hdf5
Description:
A fundamental premise in ExMatEx is that scale-bridging performed in heterogeneous MPMD materials science simulations will place important demands upon the exascale ecosystem that need to be identified and quantified.

aspcud

Homepage:
Spack package:
Versions:
1.9.5, 1.9.4
Build Dependencies:
cmake, boost, re2c, clingo
Link Dependencies:
clingo
Description:
Aspcud: Package dependency solver Aspcud is a solver for package dependencies. A package universe and a request to install, remove, or upgrade packages have to be encoded in the CUDF format. Such a CUDF document can then be passed to aspcud along with an optimization criteria to obtain a solution to the given package problem.

aspect

Homepage:
Spack package:
Versions:
develop, 2.3.0, 2.2.0, 2.1.0, 2.0.1, 2.0.0
Build Dependencies:
cmake, dealii, dealii-parameter-gui, libdap4
Link Dependencies:
dealii, dealii-parameter-gui, libdap4
Description:
Parallel and extensible Finite Element code to simulate convection in the Earth's mantle and elsewhere.

aspell

Homepage:
Spack package:
Versions:
0.60.6.1
Build Dependencies:
gnuconfig
Description:
GNU Aspell is a Free and Open Source spell checker designed to eventually replace Ispell.

aspell6-de

Homepage:
Spack package:
Versions:
6-de-20030222-1
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
German (de) dictionary for aspell.

aspell6-en

Homepage:
Spack package:
Versions:
2017.01.22-0
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
English (en) dictionary for aspell.

aspell6-es

Homepage:
Spack package:
Versions:
1.11-2
Build Dependencies:
gnuconfig, aspell
Run Dependencies:
aspell
Description:
Spanish (es) dictionary for aspell.

aspera-cli

Homepage:
Spack package:
Versions:
3.7.7
Description:
The Aspera CLI client for the Fast and Secure Protocol (FASP).

assimp

Homepage:
Spack package:
Versions:
master, 5.0.1, 4.0.1
Build Dependencies:
cmake, zlib, boost
Link Dependencies:
zlib, boost
Description:
Open Asset Import Library (Assimp) is a portable Open Source library to import various well-known 3D model formats in a uniform manner.

astra

Homepage:
Spack package:
Versions:
2020-02-03
Build Dependencies:
libxcb, libx11
Link Dependencies:
libxcb, libx11
Description:
A Space Charge Tracking Algorithm.

astral

Homepage:
Spack package:
Versions:
5.6.1, 4.10.7
Build Dependencies:
java, zip
Run Dependencies:
java
Description:
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.

astyle

Homepage:
Spack package:
Versions:
3.1, 3.0.1, 2.06, 2.05.1, 2.04
Description:
A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code.

at-spi2-atk

Homepage:
Spack package:
Versions:
2.38.0, 2.34.2, 2.26.2, 2.26.1
Build Dependencies:
meson, ninja, pkgconfig, at-spi2-core, atk
Link Dependencies:
at-spi2-core, atk
Description:
The At-Spi2 Atk package contains a library that bridges ATK to At-Spi2 D-Bus service.

at-spi2-core

Homepage:
Spack package:
Versions:
2.40.1, 2.38.0, 2.36.0, 2.28.0
Build Dependencies:
meson, ninja, glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, pkgconfig, python, gobject-introspection
Link Dependencies:
glib, dbus, gettext, libx11, libxi, libxtst, recordproto, inputproto, fixesproto, gobject-introspection
Description:
The At-Spi2 Core package provides a Service Provider Interface for the Assistive Technologies available on the GNOME platform and a library against which applications can be linked.

atf

Homepage:
Spack package:
Versions:
0.21, 0.20, 0.19
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
ATF, or Automated Testing Framework, is a collection of libraries to write test programs in C, C++ and POSIX shell.

athena

Homepage:
Spack package:
Versions:
master, 4.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, mpi, fftw
Link Dependencies:
mpi, fftw
Description:
Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD). It was developed primarily for studies of the interstellar medium, star formation, and accretion flows.

atk

Homepage:
Spack package:
Versions:
2.36.0, 2.30.0, 2.28.1, 2.20.0, 2.14.0
Build Dependencies:
meson, glib, gettext, pkgconfig, gobject-introspection, libffi
Link Dependencies:
glib, gettext, gobject-introspection, libffi
Description:
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

atlas

Homepage:
Spack package:
Versions:
3.11.41, 3.11.39, 3.11.34, 3.10.3, 3.10.2
Description:
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines in the LAPACK library.

atmi

Homepage:
Spack package:
Versions:
4.3.1, 4.3.0, 4.2.0, 4.1.0, 4.0.0, 3.10.0, 3.9.0, 3.8.0, 3.7.0, 3.5.0
Build Dependencies:
cmake, rsync
Link Dependencies:
rsync, comgr, hsa-rocr-dev, libelf
Description:
Asynchronous Task and Memory Interface, or ATMI, is a runtime framework and programming model for heterogeneous CPU-GPU systems. It provides a consistent, declarative API to create task graphs on CPUs and GPUs (integrated and discrete).

atom-dft

Homepage:
Spack package:
Versions:
4.2.6
Build Dependencies:
libgridxc, xmlf90
Link Dependencies:
libgridxc, xmlf90
Description:
ATOM is a program for DFT calculations in atoms and pseudopotential generation.

atompaw

Homepage:
Spack package:
Versions:
4.1.1.0, 4.0.0.13, 3.1.0.3
Build Dependencies:
lapack, blas, libxc
Link Dependencies:
lapack, blas, libxc
Description:
A Projector Augmented Wave (PAW) code for generating atom-centered functions. Official website: http://pwpaw.wfu.edu User's guide: ~/doc/atompaw-usersguide.pdf

atop

Homepage:
Spack package:
Versions:
2.5.0, 2.4.0, 2.3.0, 2.2.6, 2.2-3
Build Dependencies:
zlib, ncurses
Link Dependencies:
zlib, ncurses
Description:
Atop is an ASCII full-screen performance monitor for Linux

attr

Homepage:
Spack package:
Versions:
2.4.48, 2.4.47, 2.4.46
Build Dependencies:
gnuconfig
Description:
Commands for Manipulating Filesystem Extended Attributes

audacious

Homepage:
Spack package:
Versions:
4.0.2, 4.0.1, 4.0, 3.10.1, 3.10
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, gettext, glib, qt
Link Dependencies:
gettext, iconv, glib, qt
Description:
A lightweight and versatile audio player.

audacity

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.4.0
Build Dependencies:
cmake, wxwidgets
Link Dependencies:
wxwidgets
Description:
Audacity is a cross-platform multitrack audio editor. It allows you to record sounds directly or to import files in various formats. It features a few simple effects, all of the editing features you should need, and unlimited undo. The GUI was built with wxWidgets and the audio I/O supports PulseAudio, OSS and ALSA under Linux.

audit-userspace

Homepage:
Spack package:
Versions:
2.8.5, 2.8.4, 2.8.3, 2.8.2
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, openldap, swig
Link Dependencies:
openldap, swig
Description:
Linux audit userspace

augustus

Homepage:
Spack package:
Versions:
3.4.0, 3.3.2, 3.3.1-tag1, 3.3, 3.2.3
Build Dependencies:
perl, python, bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Link Dependencies:
bamtools, gsl, boost, zlib, htslib, bcftools, samtools, curl, sqlite, mysql-client, mysqlpp, lp-solve, suite-sparse
Run Dependencies:
perl, python
Description:
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

authd

Homepage:
Spack package:
Versions:
1.4.4
Description:
authd is a small and fast RFC 1413 ident protocol daemon with both xinetd server and interactive modes that supports IPv6 and IPv4 as well as the more popular features of pidentd.

authselect

Homepage:
Spack package:
Versions:
1.2.1, 1.2, 1.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, popt
Link Dependencies:
popt
Description:
Select authentication and indentity profile to use on the system.

autoconf

Homepage:
Spack package:
Versions:
2.71, 2.70, 2.69, 2.62, 2.59
Build Dependencies:
gnuconfig, m4, perl
Run Dependencies:
m4, perl
Description:
Autoconf -- system configuration part of autotools

autoconf-archive

Homepage:
Spack package:
Versions:
2019.01.06
Build Dependencies:
gnuconfig
Description:
The GNU Autoconf Archive is a collection of more than 500 macros for GNU Autoconf.

autodock-gpu

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cuda
Link Dependencies:
cuda
Description:
AutoDock-GPU: AutoDock for GPUs and other accelerators. OpenCL and Cuda accelerated version of AutoDock 4.2.6. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units.

autodock-vina

Homepage:
Spack package:
Versions:
1_1_2
Build Dependencies:
boost
Link Dependencies:
boost
Description:
AutoDock Vina is an open-source program for doing molecular docking

autofact

Homepage:
Spack package:
Versions:
3_4
Run Dependencies:
perl, perl-bioperl, perl-io-string, perl-libwww-perl, blast-legacy
Description:
An Automatic Functional Annotation and Classification Tool

autogen

Homepage:
Spack package:
Versions:
5.18.12
Build Dependencies:
gnuconfig, pkgconfig, guile, libxml2
Link Dependencies:
guile, libxml2
Description:
AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text. It is especially valuable in programs that have several blocks of text that must be kept synchronized.

automaded

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
cmake, mpi, boost, callpath
Link Dependencies:
mpi, boost, callpath
Description:
AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and correctness problems in MPI applications. It creates control-flow models of each MPI process and, when a failure occurs, these models are leveraged to find the origin of problems automatically. MPI calls are intercepted (using wrappers) to create the models. When an MPI application hangs, AutomaDeD creates a progress-dependence graph that helps finding the process (or group of processes) that caused the hang.

automake

Homepage:
Spack package:
Versions:
1.16.3, 1.16.2, 1.16.1, 1.15.1, 1.15, 1.14.1, 1.13.4, 1.11.6
Build Dependencies:
gnuconfig, autoconf, perl
Run Dependencies:
perl
Description:
Automake -- make file builder part of autotools

avizo

Homepage:
Spack package:
Versions:
2020.1, 2019.4, 2019.3, 9.7.0
Description:
Avizo is a 3D analysis software for scientific and industrial data. Wherever three-dimensional imaging data sets need to be processed, in materials science, geosciences or engineering applications, Avizo offers abundant state-of-the-art image data processing, exploration and analysis features within an intuitive workflow and easy-to-use graphical user interface.

aws-parallelcluster

Homepage:
Spack package:
Versions:
2.11.2, 2.11.1, 2.11.0, 2.10.4, 2.10.3, 2.10.2, 2.10.1, 2.10.0, 2.9.1, 2.9.0, 2.8.1, 2.8.0, 2.7.0, 2.6.1, 2.6.0, 2.5.1, 2.5.0
Build Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Run Dependencies:
python, py-future, py-ipaddress, py-configparser, py-tabulate, py-pyyaml, py-jinja2, py-boto3, py-setuptools, py-enum34
Description:
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

awscli

Homepage:
Spack package:
Versions:
1.16.308, 1.16.179
Build Dependencies:
python, py-setuptools, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Run Dependencies:
python, py-botocore, py-docutils, py-rsa, py-s3transfer, py-argparse, py-pyyaml, py-colorama
Test Dependencies:
py-nose, py-mock
Description:
This package provides a unified command line interface to Amazon Web Services

axel

Homepage:
Spack package:
Versions:
2.17.10, 2.16.1
Build Dependencies:
gnuconfig, pkgconfig, gettext, openssl
Link Dependencies:
gettext, openssl
Description:
Axel is a light command line download accelerator for Linux and Unix

axl

Homepage:
Spack package:
Versions:
main, 0.4.0, 0.3.0, 0.2.0, 0.1.1
Build Dependencies:
cmake, kvtree
Link Dependencies:
kvtree
Description:
Asynchronous transfer library

axom

Homepage:
Spack package:
Versions:
develop, main, 0.5.0, 0.4.0, 0.3.3, 0.3.2, 0.3.1, 0.3.0, 0.2.9
Build Dependencies:
cuda, cmake, mpi, conduit, hdf5, lua, scr, kvtree, dtcmp, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud, llvm
Link Dependencies:
cuda, mpi, conduit, hdf5, lua, scr, kvtree, dtcmp, raja, umpire, mfem, python, cppcheck, doxygen, graphviz, py-sphinx, py-shroud
Description:
Axom provides a robust, flexible software infrastructure for the development of multi-physics applications and computational tools.

babelflow

Homepage:
Spack package:
Versions:
1.1.0, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BabelFlow is an Embedded Domain Specific Language to describe algorithms using a task graph abstraction which allows them to be executed on top of one of several available runtime systems.

babeltrace

Homepage:
Spack package:
Versions:
1.2.4
Build Dependencies:
gnuconfig, glib, uuid, popt
Link Dependencies:
glib, uuid, popt
Description:
Babeltrace is a trace viewer and converter reading and writing the Common Trace Format (CTF). Its main use is to pretty-print CTF traces into a human-readable text output ordered by time.

bacio

Homepage:
Spack package:
Versions:
2.5.0, 2.4.1
Build Dependencies:
cmake
Description:
The bacio ibrary performs binary I/O for the NCEP models, processing unformatted byte-addressable data records, and transforming the little endian files and big endian files.

backupninja

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, bash, gawk
Description:
Backupninja backup tool.

bam-readcount

Homepage:
Spack package:
Versions:
0.8.0
Build Dependencies:
cmake
Description:
Bam-readcount generates metrics at single nucleotide positions.

bamaddrg

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
bamtools
Description:
bamaddrg adds read groups to input BAM files, streams BAM output on stdout

bamdst

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Bamdst is a a lightweight bam file depth statistical tool.

bamtools

Homepage:
Spack package:
Versions:
2.5.1, 2.5.0, 2.4.1, 2.4.0, 2.3.0, 2.2.3
Build Dependencies:
cmake
Link Dependencies:
zlib
Description:
C++ API & command-line toolkit for working with BAM data.

bamutil

Homepage:
Spack package:
Versions:
1.0.13
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.

bannergrab

Homepage:
Spack package:
Versions:
master
Description:
Bannergrab is a simple tool, designed to collect information from network services. It can do this using two different methods; grab the connection banners and send triggers and collect the responses. Bannergrab defaults to sending triggers.

barrnap

Homepage:
Spack package:
Versions:
0.8, 0.7, 0.6
Run Dependencies:
hmmer
Description:
Barrnap predicts the location of ribosomal RNA genes in genomes.

bart

Homepage:
Spack package:
Versions:
0.7.00, 0.6.00, 0.5.00
Build Dependencies:
cuda, libpng, fftw, blas, lapack, python
Link Dependencies:
cuda, libpng, fftw, blas, lapack
Run Dependencies:
py-numpy, py-matplotlib, python
Description:
BART: Toolbox for Computational Magnetic Resonance Imaging

barvinok

Homepage:
Spack package:
Versions:
0.41.5
Build Dependencies:
gnuconfig, gmp, llvm, libyaml
Link Dependencies:
gmp, llvm, libyaml
Description:
barvinok is a library for counting the number of integer points in parametric and non-parametric polytopes.

bash

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.4, 4.3
Build Dependencies:
gnuconfig, ncurses, readline, iconv
Link Dependencies:
ncurses, readline, iconv
Description:
The GNU Project's Bourne Again SHell.

bash-completion

Homepage:
Spack package:
Versions:
develop, 2.7, 2.3
Build Dependencies:
gnuconfig, automake, autoconf, libtool
Run Dependencies:
bash
Description:
Programmable completion functions for bash.

bashtop

Homepage:
Spack package:
Versions:
0.8.17, 0.8.16, 0.8.15, 0.8.14, 0.8.13, 0.8.12, 0.8.11, 0.8.10, 0.8.9, 0.8.8
Description:
Linux resource monitor.

bat

Homepage:
Spack package:
Versions:
0.13.0, 0.12.1
Build Dependencies:
rust
Link Dependencies:
rust
Description:
A cat(1) clone with wings.

batctl

Homepage:
Spack package:
Versions:
2019.5, 2019.4, 2019.3, 2019.2
Build Dependencies:
libnl
Link Dependencies:
libnl
Description:
B.A.T.M.A.N. advanced control and management tool

bats

Homepage:
Spack package:
Versions:
0.4.0
Description:
Bats is a TAP-compliant testing framework for Bash.

bazel

Homepage:
Spack package:
Versions:
4.0.0, 3.7.2, 3.7.1, 3.7.0, 3.6.0, 3.5.1, 3.5.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0, 3.2.0, 3.1.0, 3.0.0, 2.2.0, 2.1.1, 2.1.0, 2.0.1, 2.0.0, 1.2.1, 1.2.0, 1.1.0, 1.0.1, 1.0.0, 0.29.1, 0.29.0, 0.28.1, 0.28.0, 0.27.2, 0.27.1, 0.27.0, 0.26.1, 0.26.0, 0.25.3, 0.25.2, 0.25.1, 0.25.0, 0.24.1, 0.24.0, 0.23.2, 0.23.1, 0.23.0, 0.22.0, 0.21.0, 0.20.0, 0.19.2, 0.19.1, 0.19.0, 0.18.1, 0.18.0, 0.17.2, 0.17.1, 0.16.1, 0.16.0, 0.15.2, 0.15.1, 0.15.0, 0.14.1, 0.14.0, 0.13.1, 0.13.0, 0.12.0, 0.11.1, 0.11.0, 0.10.1, 0.10.0, 0.9.0, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.4, 0.5.3, 0.5.2, 0.5.1, 0.5.0, 0.4.5, 0.4.4, 0.4.3, 0.4.2, 0.4.1, 0.4.0, 0.3.2, 0.3.1, 0.3.0
Build Dependencies:
java, python, zip
Run Dependencies:
java, python, zip
Description:
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bbcp

Homepage:
Spack package:
Versions:
master
Build Dependencies:
zlib, openssl, libnsl
Link Dependencies:
zlib, openssl, libnsl
Description:
Securely and quickly copy data from source to target

bbmap

Homepage:
Spack package:
Versions:
38.63, 37.36
Build Dependencies:
java
Link Dependencies:
java
Description:
Short read aligner for DNA and RNA-seq data.

bc

Homepage:
Spack package:
Versions:
1.07
Build Dependencies:
gnuconfig, ed, texinfo
Description:
bc is an arbitrary precision numeric processing language. Syntax is similar to C, but differs in many substantial areas. It supports interactive execution of statements.

bcache

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6, 1.0.5, 1.0.4
Build Dependencies:
uuid, util-linux, gettext, pkgconfig
Link Dependencies:
uuid, util-linux, gettext
Description:
Bcache is a patch for the Linux kernel to use SSDs to cache other block devices.

bcftools

Homepage:
Spack package:
Versions:
1.12, 1.10.2, 1.9, 1.8, 1.7, 1.6, 1.4, 1.3.1, 1.2
Build Dependencies:
gnuconfig, gsl, perl, htslib
Link Dependencies:
gsl, htslib
Run Dependencies:
py-matplotlib, perl
Description:
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF- compressed.

bcl2fastq2

Homepage:
Spack package:
Versions:
2.20.0.422, 2.19.1.403
Build Dependencies:
boost, cmake, libxml2, libxslt, libgcrypt, zlib
Link Dependencies:
boost, libxml2, libxslt, libgcrypt, zlib
Description:
The bcl2fastq2 Conversion Software converts base call (BCL) files from a sequencing run into FASTQ files.

bdftopcf

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libxfont, pkgconfig, xproto, fontsproto, util-macros
Link Dependencies:
libxfont, xproto, fontsproto
Description:
bdftopcf is a font compiler for the X server and font server. Fonts in Portable Compiled Format can be read by any architecture, although the file is structured to allow one particular architecture to read them directly without reformatting. This allows fast reading on the appropriate machine, but the files are still portable (but read more slowly) on other machines.

bdii

Homepage:
Spack package:
Versions:
5.2.25, 5.2.24
Run Dependencies:
openldap
Description:
The Berkeley Database Information Index (BDII) consists of a standard LDAP database which is updated by an external process. The update process obtains LDIF from a number of sources and merges them. It then compares this to the contents of the database and creates an LDIF file of the differences. This is then used to update the database.

bdw-gc

Homepage:
Spack package:
Versions:
8.0.6, 8.0.0, 7.6.0, 7.4.4
Build Dependencies:
gnuconfig, libatomic-ops
Link Dependencies:
libatomic-ops
Description:
The Boehm-Demers-Weiser conservative garbage collector is a garbage collecting replacement for C malloc or C++ new.

beagle

Homepage:
Spack package:
Versions:
5.1, 5.0, 4.1
Run Dependencies:
java
Description:
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

beakerlib

Homepage:
Spack package:
Versions:
1.20, 1.19, 1.18.1
Description:
BeakerLib is a shell-level integration testing library, providing convenience functions which simplify writing, running and analysis of integration and blackbox tests.

bear

Homepage:
Spack package:
Versions:
2.2.0, 2.0.4
Build Dependencies:
cmake, python
Link Dependencies:
python
Description:
Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.

beast-tracer

Homepage:
Spack package:
Versions:
1.7.1
Build Dependencies:
ant, java
Run Dependencies:
java
Description:
Tracer is a graphical tool for visualization and diagnostics of MCMC output.

beast1

Homepage:
Spack package:
Versions:
1.10.4, 1.8.4
Build Dependencies:
libbeagle
Link Dependencies:
libbeagle
Run Dependencies:
java, libbeagle
Description:
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

beast2

Homepage:
Spack package:
Versions:
2.6.4, 2.6.3, 2.5.2, 2.4.6
Build Dependencies:
java
Link Dependencies:
java
Description:
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

bedops

Homepage:
Spack package:
Versions:
2.4.40, 2.4.39, 2.4.35, 2.4.34, 2.4.30
Description:
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale.

bedtools2

Homepage:
Spack package:
Versions:
2.30.0, 2.29.2, 2.27.1, 2.27.0, 2.26.0, 2.25.0, 2.23.0
Build Dependencies:
zlib, bzip2, xz, python
Link Dependencies:
zlib, bzip2, xz
Description:
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome.

beforelight

Homepage:
Spack package:
Versions:
1.0.5
Build Dependencies:
gnuconfig, libx11, libxscrnsaver, libxt, pkgconfig, util-macros
Link Dependencies:
libx11, libxscrnsaver, libxt
Description:
The beforelight program is a sample implementation of a screen saver for X servers supporting the MIT-SCREEN-SAVER extension. It is only recommended for use as a code sample, as it does not include features such as screen locking or configurability.

benchmark

Homepage:
Spack package:
Versions:
develop, 1.6.0, 1.5.5, 1.5.4, 1.5.0, 1.4.1, 1.4.0, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
A microbenchmark support library

berkeley-db

Homepage:
Spack package:
Versions:
18.1.40, 18.1.32, 6.2.32, 6.1.29, 6.0.35, 5.3.28
Build Dependencies:
gnuconfig
Description:
Oracle Berkeley DB

berkeleygw

Homepage:
Spack package:
Versions:
3.0.1, 3.0, 2.1
Build Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api, python, py-numpy, py-setuptools, py-h5py
Link Dependencies:
blas, lapack, scalapack, mpi, hdf5, elpa, fftw-api
Run Dependencies:
python, py-numpy, py-setuptools, py-h5py
Test Dependencies:
perl
Description:
BerkeleyGW is a many-body perturbation theory code for excited states, using the GW method and the GW plus Bethe-Salpeter equation (GW-BSE) method to solve respectively for quasiparticle excitations and optical properties of materials.

bertini

Homepage:
Spack package:
Versions:
1.5
Build Dependencies:
gnuconfig, flex, bison, gmp, mpfr, mpi
Link Dependencies:
gmp, mpfr, mpi
Description:
Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. It solves for the numerical solution of systems of polynomial equations using homotopy continuation.

bgpdump

Homepage:
Spack package:
Versions:
master
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, bzip2
Link Dependencies:
bzip2
Description:
Utility and C Library for parsing MRT files

bib2xhtml

Homepage:
Spack package:
Versions:
3.0-79-ge935
Run Dependencies:
texlive
Description:
bib2xhtml is a program that converts BibTeX files into HTML.

bigreqsproto

Homepage:
Spack package:
Versions:
1.1.2
Build Dependencies:
gnuconfig, pkgconfig, util-macros
Description:
Big Requests Extension. This extension defines a protocol to enable the use of requests that exceed 262140 bytes in length.

bind9

Homepage:
Spack package:
Versions:
9_14_6
Build Dependencies:
gnuconfig, pkgconfig
Link Dependencies:
libuv, openssl, libiconv
Description:
BIND 9 has evolved to be a very flexible, full-featured DNS system.

binutils

Homepage:
Spack package:
Versions:
2.37, 2.36.1, 2.35.2, 2.35.1, 2.35, 2.34, 2.33.1, 2.32, 2.31.1, 2.29.1, 2.28, 2.27, 2.26, 2.25.1, 2.25, 2.24, 2.23.2, 2.20.1
Build Dependencies:
gnuconfig, zlib, diffutils, gettext, m4, bison, texinfo
Link Dependencies:
zlib, gettext
Description:
GNU binutils, which contain the linker, assembler, objdump and others

bioawk

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
zlib, bison
Link Dependencies:
zlib
Description:
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.

biobambam2

Homepage:
Spack package:
Versions:
2.0.177
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libmaus2
Link Dependencies:
libmaus2
Description:
Tools for early stage alignment file processing

biobloom

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
gnuconfig, boost, sdsl-lite, sparsehash, zlib
Link Dependencies:
boost, sdsl-lite, sparsehash, zlib
Description:
BioBloom Tools (BBT) provides the means to create filters for a given reference and then to categorize sequences.

bird

Homepage:
Spack package:
Versions:
2.0.2, 2.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, flex, bison, ncurses, readline
Link Dependencies:
ncurses, readline
Description:
The BIRD project aims to develop a dynamic IP routing daemon with full support of all modern routing protocols, easy to use configuration interface and powerful route filtering language, primarily targeted on (but not limited to) Linux and other UNIX-like systems and distributed under the GNU General Public License.

bismark

Homepage:
Spack package:
Versions:
0.23.0, 0.19.0, 0.18.2
Run Dependencies:
bowtie2, perl, samtools
Description:
A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bison

Homepage:
Spack package:
Versions:
3.8.2, 3.8.1, 3.8, 3.7.6, 3.7.5, 3.7.4, 3.7.3, 3.7.2, 3.7.1, 3.7, 3.6.4, 3.6.3, 3.6.2, 3.6.1, 3.6, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.4.2, 3.4.1, 3.3.2, 3.0.5, 3.0.4, 2.7
Build Dependencies:
gnuconfig, diffutils, m4, perl
Run Dependencies:
m4
Description:
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

bitlbee

Homepage:
Spack package:
Versions:
3.6-1, 3.6, 3.5-2
Build Dependencies:
gnuconfig, glib, gnutls, libgcrypt
Link Dependencies:
glib, gnutls, libgcrypt
Description:
An IRC to other chat networks gateway.

bitmap

Homepage:
Spack package:
Versions:
1.0.8
Build Dependencies:
gnuconfig, libx11, libxmu, libxaw, libxt, xbitmaps, xproto, pkgconfig, util-macros
Link Dependencies:
libx11, libxmu, libxaw, libxt, xbitmaps, xproto
Description:
bitmap, bmtoa, atobm - X bitmap (XBM) editor and converter utilities.

bitsery

Homepage:
Spack package:
Versions:
5.1.0
Build Dependencies:
cmake
Description:
Header only C++ binary serialization library. It is designed around the networking requirements for real-time data delivery, especially for games.

blaspp

Homepage:
Spack package:
Versions:
master, 2021.04.01, 2020.10.02, 2020.10.01, 2020.10.00
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blas, llvm-openmp, rocblas
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, blas, llvm-openmp, rocblas
Description:
C++ API for the Basic Linear Algebra Subroutines. Developed by the Innovative Computing Laboratory at the University of Tennessee, Knoxville.

blasr

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp, python
Link Dependencies:
ncurses, hdf5, htslib, zlib, boost, pbbam, blasr-libcpp
Description:
The PacBio long read aligner.

blasr-libcpp

Homepage:
Spack package:
Versions:
5.3.1
Build Dependencies:
pbbam, hdf5, python
Link Dependencies:
pbbam, hdf5
Description:
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences.

blast-legacy

Homepage:
Spack package:
Versions:
2.2.26
Build Dependencies:
tcsh
Description:
Legacy NCBI BLAST distribution -- no longer supported. Contains older programs including `blastall'

blast-plus

Homepage:
Spack package:
Versions:
2.12.0, 2.11.0, 2.9.0, 2.8.1, 2.7.1, 2.6.0, 2.2.30
Build Dependencies:
gnuconfig, jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Link Dependencies:
jpeg, libpng, freetype, gnutls, openssl, zlib, bzip2, lzo, pcre, python, perl, lmdb
Description:
Basic Local Alignment Search Tool.

blast2go

Homepage:
Spack package:
Versions:
5.2.5
Build Dependencies:
bash, java
Run Dependencies:
blast-plus
Description:
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of genomic datasets.

blat

Homepage:
Spack package:
Versions:
35
Build Dependencies:
libpng
Link Dependencies:
libpng
Description:
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm.

blaze

Homepage:
Spack package:
Versions:
master, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.6, 2.5, 2.4, 2.3, 2.2, 2.1, 2.0, 1.5, 1.4, 1.3, 1.2, 1.1, 1.0
Build Dependencies:
cmake, blas
Link Dependencies:
blas
Description:
Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain- specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

blis

Homepage:
Spack package:
Versions:
master, 0.8.1, 0.8.0, 0.7.0, 0.6.1, 0.6.0, 0.5.0, 0.4.0, 0.3.2, 0.3.1, 0.3.0, 0.2.2
Build Dependencies:
python
Run Dependencies:
python
Description:
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a new/modified/3-clause BSD license. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. An object-based API unique to BLIS is also available.

bliss

Homepage:
Spack package:
Versions:
0.73
Build Dependencies:
gmp, libtool
Link Dependencies:
gmp
Description:
bliss: A Tool for Computing Automorphism Groups and Canonical Labelings of Graphs

blitz

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1, 1.0.0
Build Dependencies:
gnuconfig, python
Description:
N-dimensional arrays for C++

blktrace

Homepage:
Spack package:
Versions:
1.2.0, 1.1.0, 1.0.5, 1.0.4, 1.0.3, 1.0.2
Build Dependencies:
libaio
Link Dependencies:
libaio
Description:
blktrace is a block layer IO tracing mechanism which provides detailed information about request queue operations up to user space. There are three major components: a kernel component, a utility to record the i/o trace information for the kernel to user space, and utilities to analyse and view the trace information.

bloaty

Homepage:
Spack package:
Versions:
1.1
Build Dependencies:
cmake
Description:
Bloaty McBloatface: a size profiler for binaries.

blogbench

Homepage:
Spack package:
Versions:
1.1, 1.0
Build Dependencies:
gnuconfig
Description:
A filesystem benchmark tool that simulates a realistic load.

blt

Homepage:
Spack package:
Versions:
develop, main, 0.4.1, 0.4.0, 0.3.6, 0.3.5, 0.3.0, 0.2.5, 0.2.0
Run Dependencies:
cmake
Description:
BLT is a streamlined CMake-based foundation for Building, Linking and Testing large-scale high performance computing (HPC) applications.

bmake

Homepage:
Spack package:
Versions:
20200710, 20180512, 20171207
Description:
Portable version of NetBSD make(1).

bmi

Homepage:
Spack package:
Versions:
main
Build Dependencies:
gnuconfig, autoconf, automake
Description:
a communications framework and network abstraction layer

bml

Homepage:
Spack package:
Versions:
develop, 1.3.1, 1.3.0, 1.2.3, 1.2.2, 1.1.0
Build Dependencies:
cmake, blas, lapack, mpi, python
Link Dependencies:
blas, lapack, mpi
Description:
The basic matrix library (bml) is a collection of various matrix data formats (in dense and sparse) and their associated algorithms for basic matrix operations.

bohrium

Homepage:
Spack package:
Versions:
develop, 0.9.1, 0.9.0
Build Dependencies:
cuda, cmake, python, boost, opencl, netlib-lapack, blas, opencv, py-numpy, swig, py-cython, zlib
Link Dependencies:
cuda, python, boost, opencl, netlib-lapack, blas, opencv, zlib
Run Dependencies:
python, py-numpy
Test Dependencies:
python, py-numpy
Description:
Library for automatic acceleration of array operations

boinc-client

Homepage:
Spack package:
Versions:
7.16.5
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Link Dependencies:
curl, openssl, freeglut, libsm, libice, libxmu, libxi, libx11, libjpeg, wxwidgets, libnotify, sqlite
Description:
BOINC is a platform for high-throughput computing on a large scale (thousands or millions of computers). It can be used for volunteer computing (using consumer devices) or grid computing (using organizational resources). It supports virtualized, parallel, and GPU- based applications.

bolt

Homepage:
Spack package:
Versions:
main, 2.0, 1.0.1, 1.0
Build Dependencies:
cmake, argobots, autoconf, automake, libtool
Link Dependencies:
argobots
Description:
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. Unlike other OpenMP implementations, BOLT utilizes a lightweight threading model for its underlying threading mechanism. It currently adopts Argobots, a new holistic, low-level threading and tasking runtime, in order to overcome shortcomings of conventional OS-level threads. The current BOLT implementation is based on the OpenMP runtime in LLVM, and thus it can be used with LLVM/Clang, Intel OpenMP compiler, and GCC.

bonniepp

Homepage:
Spack package:
Versions:
1.98
Build Dependencies:
gnuconfig
Description:
Bonnie++ is a benchmark suite that is aimed at performing a number of simple tests of hard drive and file system performance.

bookleaf-cpp

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1, 2.0
Build Dependencies:
cmake, caliper, parmetis, silo, typhon, mpi, yaml-cpp
Link Dependencies:
caliper, parmetis, silo, typhon, mpi, yaml-cpp
Description:
BookLeaf is a 2D unstructured hydrodynamics mini-app.

boost

Homepage:
Spack package:
Versions:
develop, 1.77.0, 1.76.0, 1.75.0, 1.74.0, 1.73.0, 1.72.0, 1.71.0, 1.70.0, 1.69.0, 1.68.0, 1.67.0, 1.66.0, 1.65.1, 1.65.0, 1.64.0, 1.63.0, 1.62.0, 1.61.0, 1.60.0, 1.59.0, 1.58.0, 1.57.0, 1.56.0, 1.55.0, 1.54.0, 1.53.0, 1.52.0, 1.51.0, 1.50.0, 1.49.0, 1.48.0, 1.47.0, 1.46.1, 1.46.0, 1.45.0, 1.44.0, 1.43.0, 1.42.0, 1.41.0, 1.40.0, 1.39.0, 1.38.0, 1.37.0, 1.36.0, 1.35.0, 1.34.1, 1.34.0
Build Dependencies:
icu4c, python, mpi, bzip2, zlib, py-numpy
Link Dependencies:
icu4c, python, mpi, bzip2, zlib
Run Dependencies:
py-numpy
Description:
Boost provides free peer-reviewed portable C++ source libraries, emphasizing libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications. The Boost license encourages both commercial and non-commercial use.

boostmplcartesianproduct

Homepage:
Spack package:
Versions:
20161205
Description:
Cartesian_product is an extension to the Boost.MPL library and as such requires a version of the Boost libraries on your system.

botan

Homepage:
Spack package:
Versions:
2.18.1, 2.18.0, 2.17.3, 2.17.2, 2.17.1, 2.17.0, 2.16.0, 2.15.0, 2.14.0, 2.13.0, 2.12.1, 2.12.0, 2.11.0
Build Dependencies:
python, py-sphinx
Description:
Crypto and TLS for Modern C++

bowtie

Homepage:
Spack package:
Versions:
1.3.0, 1.2.3, 1.2.2_p1, 1.2.2, 1.2.1.1, 1.2.1, 1.2.0, 1.2
Build Dependencies:
tbb, zlib
Link Dependencies:
tbb, zlib
Description:
Bowtie is an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers.

bowtie2

Homepage:
Spack package:
Versions:
2.4.2, 2.4.1, 2.3.5.1, 2.3.5, 2.3.4.1, 2.3.1, 2.3.0, 2.2.5
Build Dependencies:
tbb, readline, zlib
Link Dependencies:
tbb, readline, zlib, simde
Run Dependencies:
perl, python
Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences

boxlib

Homepage:
Spack package:
Versions:
16.12.2
Build Dependencies:
cmake, mpi
Link Dependencies:
mpi
Description:
BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.

bpp-core

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake
Description:
Bio++ core library.

bpp-phyl

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ phylogeny library.

bpp-phyl-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Link Dependencies:
bpp-core, bpp-phyl, bpp-seq, bpp-seq-omics
Description:
Bio++ Phylogenetic Omics Library

bpp-seq

Homepage:
Spack package:
Versions:
2.4.1, 2.2.0
Build Dependencies:
cmake, bpp-core
Link Dependencies:
bpp-core
Description:
Bio++ seq library.

bpp-seq-omics

Homepage:
Spack package:
Versions:
2.4.1, 2.4.0, 2.3.2, 2.3.1, 2.3.0
Build Dependencies:
cmake, bpp-core, bpp-seq
Link Dependencies:
bpp-core, bpp-seq
Description:
Bio++ Sequence Omics Library

bpp-suite

Homepage:
Spack package:
Versions:
2.2.0
Build Dependencies:
cmake, texinfo, bpp-core, bpp-seq, bpp-phyl
Link Dependencies:
bpp-core, bpp-seq, bpp-phyl
Description:
BppSuite is a suite of ready-to-use programs for phylogenetic and sequence analysis.

bracken

Homepage:
Spack package:
Versions:
1.0.0
Build Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Link Dependencies:
perl, python, perl-exporter-tiny, perl-list-moreutils, perl-parallel-forkmanager
Run Dependencies:
perl, python
Description:
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

braker

Homepage:
Spack package:
Versions:
2.1.6, 2.1.4, 1.11
Build Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir, augustus, genemark-et, bamtools, samtools, diamond
Link Dependencies:
augustus, genemark-et, bamtools, samtools, diamond
Run Dependencies:
perl, perl-scalar-util-numeric, perl-parallel-forkmanager, perl-file-which, perl-yaml, perl-hash-merge, perl-logger-simple, perl-file-homedir
Description:
BRAKER is a pipeline for unsupervised RNA-Seq-based genome annotation that combines the advantages of GeneMark-ET and AUGUSTUS

branson

Homepage:
Spack package:
Versions:
develop, 0.82, 0.81, 0.8
Build Dependencies:
cmake, mpi, boost, metis, parmetis
Link Dependencies:
mpi, boost, metis, parmetis
Description:
Branson's purpose is to study different algorithms for parallel Monte Carlo transport. Currently it contains particle passing and mesh passing methods for domain decomposition.

breakdancer

Homepage:
Spack package:
Versions:
master, 1.4.5
Build Dependencies:
cmake, zlib
Link Dependencies:
zlib, ncurses
Run Dependencies:
perl-statistics-descriptive, perl-math-cdf, perl-gdgraph, perl-gdgraph-histogram, perl-list-moreutils, perl-exporter-tiny
Description:
BreakDancer-1.3.6, released under GPLv3, is a perl/Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. BreakDancerMini focuses on detecting small indels (usually between 10bp and 100bp) using normally mapped read pairs..

bref3

Homepage:
Spack package:
Versions:
2019-11-25, 2019-07-12, 2018-01-27
Run Dependencies:
java
Description:
Bref3: Converts from VCF format to bref3 format.

breseq

Homepage:
Spack package:
Versions:
0.33.2, 0.33.1, 0.31.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4
Link Dependencies:
zlib
Run Dependencies:
bedtools2, r
Description:
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for haploid microbial-sized genomes.

bridger

Homepage:
Spack package:
Versions:
2014-12-01
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
perl
Description:
Bridger : An Efficient De novo Transcriptome Assembler For RNA-Seq Data

brigand

Homepage:
Spack package:
Versions:
master, 1.3.0, 1.2.0, 1.1.0, 1.0.0
Build Dependencies:
cmake
Description:
Brigand Meta-programming library

brltty

Homepage:
Spack package:
Versions:
6.0, 5.6, 5.5, 5.4
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, expat
Link Dependencies:
expat, alsa-lib
Description:
BRLTTY is a background process (daemon) providing access to the Linux/Unix console (when in text mode) for a blind person using a refreshable braille display.

brotli

Homepage:
Spack package:
Versions:
1.0.7
Build Dependencies:
cmake
Description:
Brotli is a generic-purpose lossless compression algorithm

brpc

Homepage:
Spack package:
Versions:
0.9.7, 0.9.6, 0.9.5
Build Dependencies:
cmake, gflags, protobuf, leveldb, openssl
Link Dependencies:
gflags, protobuf, leveldb, openssl
Description:
An industrial-grade RPC framework used throughout Baidu, with 1,000,000+ instances(not counting clients) and thousands kinds of services, called "baidu-rpc" inside Baidu. Only C++ implementatioo on is opensourced right now.

brynet

Homepage:
Spack package:
Versions:
1.10.0, 1.0.8, 1.0.7, 1.0.6
Build Dependencies:
cmake
Description:
Header Only Cross platform high performance TCP network library using C++ 11.

bsseeker2

Homepage:
Spack package:
Versions:
2.1.8, 2.1.7, 2.1.2
Build Dependencies:
python, py-pysam
Run Dependencies:
python, py-pysam
Description:
A versatile aligning pipeline for bisulfite sequencing data.

bubblewrap

Homepage:
Spack package:
Versions:
0.4.0, 0.3.3, 0.3.2, 0.3.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, libcap
Link Dependencies:
libcap
Description:
Unprivileged sandboxing tool

bucky

Homepage:
Spack package:
Versions:
1.4.4
Description:
BUCKy is a free program to combine molecular data from multiple loci. BUCKy estimates the dominant history of sampled individuals, and how much of the genome supports each relationship, using Bayesian concordance analysis.

buddy

Homepage:
Spack package:
Versions:
2.4
Build Dependencies:
gnuconfig
Description:
A Binary Decision Diagram library.

bufr

Homepage:
Spack package:
Versions:
11.5.0
Build Dependencies:
cmake
Description:
The NOAA bufr library contains subroutines, functions and other utilities that can be used to read (decode) and write (encode) data in BUFR, which is a WMO standard format for the exchange of meteorological data. This is part of the NCEPLIBS project.

bumpversion

Homepage:
Spack package:
Versions:
0.5.3, 0.5.0
Build Dependencies:
python, py-setuptools
Run Dependencies:
python
Description:
Version-bump your software with a single command.

busco

Homepage:
Spack package:
Versions:
4.1.3, 3.0.1, 2.0.1
Build Dependencies:
python, blast-plus, hmmer, augustus, py-biopython
Link Dependencies:
blast-plus, hmmer, augustus
Run Dependencies:
python, py-biopython
Description:
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs

busybox

Homepage:
Spack package:
Versions:
1.31.1, 1.31.0, 1.30.1, 1.30.0
Description:
BusyBox combines tiny versions of many common UNIX utilities into a single small executable. It provides replacements for most of the utilities you usually find in GNU fileutils, shellutils, etc

butter

Homepage:
Spack package:
Versions:
0.3.3
Build Dependencies:
perl, samtools, bowtie
Link Dependencies:
samtools, bowtie
Run Dependencies:
perl
Description:
butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. A wrapper for bowtie to produce small RNA-seq alignments where multimapped small RNAs tend to be placed near regions of confidently high density.

butterflypack

Homepage:
Spack package:
Versions:
master, 1.2.1, 1.2.0, 1.1.0, 1.0.3, 1.0.1, 1.0.0
Build Dependencies:
cmake, mpi, blas, lapack, scalapack, arpack-ng
Link Dependencies:
mpi, blas, lapack, scalapack, arpack-ng
Description:
ButterflyPACK is a mathematical software for rapidly solving large-scale dense linear systems that exhibit off-diagonal rank-deficiency. These systems arise frequently from boundary element methods, or factorization phases in finite-difference/finite-element methods. ButterflyPACK relies on low-rank or butterfly formats under Hierarchical matrix, HODLR or other hierarchically nested frameworks to compress, factor and solve the linear system in quasi-linear time. The computationally most intensive phase, factorization, is accelerated via randomized linear algebras. The butterfly format, originally inspired by the butterfly data flow in fast Fourier Transform, is a linear algebra tool well-suited for compressing matrices arising from high-frequency wave equations or highly oscillatory integral operators.

bwa

Homepage:
Spack package:
Versions:
0.7.17, 0.7.15, 0.7.13, 0.7.12
Build Dependencies:
zlib, sse2neon
Link Dependencies:
zlib, sse2neon
Description:
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

bwtool

Homepage:
Spack package:
Versions:
1.0
Build Dependencies:
gnuconfig, libbeato
Link Dependencies:
libbeato
Description:
bwtool is a command-line utility for bigWig files.

byacc

Homepage:
Spack package:
Versions:
20210808
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool
Description:
Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been made as compatible as possible with AT&T Yacc. Berkeley Yacc can accept any input specification that conforms to the AT&T Yacc documentation. Specifications that take advantage of undocumented features of AT&T Yacc will probably be rejected.

byobu

Homepage:
Spack package:
Versions:
5.131, 5.127, 5.125, 5.123
Build Dependencies:
gnuconfig, tmux
Run Dependencies:
tmux
Description:
Byobu: Text-based window manager and terminal multiplexer.

byte-unixbench

Homepage:
Spack package:
Versions:
5.1.3
Description:
UnixBench is the original BYTE UNIX benchmark suite.

byteman

Homepage:
Spack package:
Versions:
4.0.12, 4.0.11, 4.0.10, 4.0.9, 4.0.8, 4.0.7
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Byteman is a tool which makes it easy to trace, monitor and test the behaviour of Java application and JDK runtime code.

bzip2

Homepage:
Spack package:
Versions:
1.0.8, 1.0.7, 1.0.6
Build Dependencies:
diffutils
Description:
bzip2 is a freely available, patent free high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

c

Homepage:
Spack package:
Description:
Virtual package for C compilers.

c-ares

Homepage:
Spack package:
Versions:
master, 1.15.0, 1.13.0
Build Dependencies:
cmake
Description:
c-ares: A C library for asynchronous DNS requests

c-blosc

Homepage:
Spack package:
Versions:
1.21.0, 1.17.0, 1.16.3, 1.15.0, 1.12.1, 1.11.1, 1.9.2, 1.9.1, 1.9.0, 1.8.1, 1.8.0
Build Dependencies:
cmake, snappy, zlib, zstd, lz4
Link Dependencies:
snappy, zlib, zstd, lz4
Description:
Blosc, an extremely fast, multi-threaded, meta-compressor library

c-blosc2

Homepage:
Spack package:
Versions:
develop, 2.0.2, 2.0.1
Build Dependencies:
cmake, lizard, lz4, snappy, zlib, zstd
Link Dependencies:
lizard, lz4, snappy, zlib, zstd
Description:
Next generation c-blosc with a new API, a new container and other bells and whistles

c-lime

Homepage:
Spack package:
Versions:
2-3-9
Build Dependencies:
gnuconfig
Description:
LIME (which can stand for Lattice QCD Interchange Message Encapsulation or more generally, Large Internet Message Encapsulation) is a simple packaging scheme for combining records containing ASCII and/or binary data.

ca-certificates-mozilla

Homepage:
Spack package:
Versions:
2021-07-05, 2021-05-25, 2021-04-13, 2021-01-19, 2020-12-08, 2020-10-14, 2020-07-22, 2020-06-24, 2020-01-01, 2019-11-27, 2019-10-16, 2019-08-28
Description:
The Mozilla CA certificate store in PEM format

cabana

Homepage:
Spack package:
Versions:
master, 0.4.0, 0.3.0, 0.2.0, 0.1.0-rc0, 0.1.0
Build Dependencies:
cmake, kokkos-legacy, kokkos, arborx, heffte, hypre-cmake, mpi
Link Dependencies:
kokkos-legacy, kokkos, arborx, heffte, hypre-cmake, mpi
Description:
The Exascale Co-Design Center for Particle Applications Toolkit

cachefilesd

Homepage:
Spack package:
Versions:
0.10.10, 0.10.9, 0.10.7, 0.10.6, 0.10.5
Description:
The cachefilesd daemon manages the caching files and directory that are that are used by network file systems such a AFS and NFS to do persistent caching to the local disk.

caffe

Homepage:
Spack package:
Versions:
1.0, rc5, rc4, rc3, rc2
Build Dependencies:
cuda, cmake, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, py-numpy, matlab
Link Dependencies:
cuda, boost, blas, protobuf, glog, gflags, hdf5, opencv, leveldb, lmdb, python, matlab
Run Dependencies:
python, py-numpy
Description:
Caffe is a deep learning framework made with expression, speed, and modularity in mind. It is developed by the Berkeley Vision and Learning Center (BVLC) and by community contributors.

cairo

Homepage:
Spack package:
Versions:
1.17.4, 1.17.2, 1.16.0, 1.14.12, 1.14.8, 1.14.0
Build Dependencies:
gnuconfig, libx11, libxext, libxrender, libxcb, python, libpng, librsvg, glib, pixman, automake, autoconf, libtool, m4, freetype, pkgconfig, fontconfig
Link Dependencies:
libx11, libxext, libxrender, libxcb, libpng, librsvg, glib, pixman, freetype, fontconfig
Description:
Cairo is a 2D graphics library with support for multiple output devices.

cairomm

Homepage:
Spack package:
Versions:
1.6.4, 1.6.2
Build Dependencies:
gnuconfig, cairo, libsigcpp
Link Dependencies:
cairo, libsigcpp
Description:
Cairomm is a C++ wrapper for the cairo graphics library.

caliper

Homepage:
Spack package:
Versions:
master, 2.6.0, 2.5.0, 2.4.0, 2.3.0, 2.2.0, 2.1.1, 2.0.1, 1.9.1, 1.9.0, 1.8.0, 1.7.0
Build Dependencies:
cuda, cmake, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow, python
Link Dependencies:
cuda, adiak, papi, libpfm4, mpi, unwind, elfutils, sosflow
Description:
Caliper is a program instrumentation and performance measurement framework. It is designed as a performance analysis toolbox in a library, allowing one to bake performance analysis capabilities directly into applications and activate them at runtime.

callflow

Homepage:
Spack package:
Versions:
develop, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Run Dependencies:
python, py-setuptools, py-numpy, py-scipy, py-pandas, py-hatchet, py-statsmodels, py-scikit-learn, py-colorlog, py-jsonschema, py-matplotlib, py-networkx, py-ipython, py-flask-socketio, py-flask-cors
Description:
CallFlow is an interactive visual analysis tool that provides a high- level overview of CCTs together with semantic refinement operations to progressively explore the CCTs.

callpath

Homepage:
Spack package:
Versions:
1.0.4, 1.0.2, 1.0.1
Build Dependencies:
cmake, libdwarf, dyninst, adept-utils, mpi
Link Dependencies:
elf, libdwarf, dyninst, adept-utils, mpi
Description:
Library for representing callpaths consistently in distributed-memory performance tools.

camellia

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, trilinos, moab, hdf5, mpi
Link Dependencies:
trilinos, moab, hdf5, mpi
Description:
Camellia: user-friendly MPI-parallel adaptive finite element package, with support for DPG and other hybrid methods, built atop Trilinos.

camp

Homepage:
Spack package:
Versions:
main, 0.3.0, 0.2.3, 0.2.2, 0.1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, cub, blt
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cub, blt
Description:
Compiler agnostic metaprogramming library providing concepts, type operations and tuples for C++ and cuda

camx

Homepage:
Spack package:
Versions:
6.50
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
Comprehensive Air Quality Model with Extensions.

canal

Homepage:
Spack package:
Versions:
1.1.4, 1.1.3, 1.1.2
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
Alibaba MySQL binlog incremental subscription & consumer components.

candle-benchmarks

Homepage:
Spack package:
Versions:
0.1
Build Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, opencv, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Link Dependencies:
python, opencv
Run Dependencies:
python, py-theano, py-keras, py-matplotlib, py-tqdm, py-scikit-learn, py-mdanalysis, py-mpi4py, py-h5py, py-requests
Description:
ECP-CANDLE Benchmarks

cantera

Homepage:
Spack package:
Versions:
2.5.1, 2.4.0, 2.3.0, 2.2.1
Build Dependencies:
scons, fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp, python, py-cython, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Link Dependencies:
fmt, googletest, eigen, boost, sundials, blas, lapack, yaml-cpp
Run Dependencies:
python, py-numpy, py-scipy, py-3to2, py-unittest2, py-unittest2py3k, matlab
Description:
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.

canu

Homepage:
Spack package:
Versions:
2.0, 1.8, 1.7.1, 1.7, 1.5
Build Dependencies:
boost
Link Dependencies:
boost
Run Dependencies:
gnuplot, java, perl
Description:
A single molecule sequence assembler for genomes large and small.

cap3

Homepage:
Spack package:
Versions:
2015-02-11
Description:
CAP3 is DNA Sequence Assembly Program

capnproto

Homepage:
Spack package:
Versions:
0.8.0, 0.7.0
Build Dependencies:
gnuconfig
Description:
Cap'n Proto is an insanely fast data interchange format and capability- based RPC system.

capstone

Homepage:
Spack package:
Versions:
master, 4.0.2, 4.0.1, next
Build Dependencies:
cmake
Description:
Capstone is a lightweight multi-platform, multi-architecture disassembly framework.

cardioid

Homepage:
Spack package:
Versions:
develop, elecfem
Build Dependencies:
cmake, blas, lapack, mpi, cuda, mfem, hypre, perl
Link Dependencies:
blas, lapack, mpi, cuda, mfem, hypre
Description:
Cardiac simulation suite.

care

Homepage:
Spack package:
Versions:
develop, master, 0.3.0, 0.2.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, camp, umpire, raja, chai, cub
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, camp, umpire, raja, chai, cub
Description:
Algorithms for chai managed arrays.

casacore

Homepage:
Spack package:
Versions:
3.4.0, 3.3.0, 3.2.0, 3.1.2, 3.1.1, 3.1.0, 3.0.0, 2.4.1
Build Dependencies:
cmake, readline, flex, bison, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Link Dependencies:
readline, blas, lapack, cfitsio, wcslib, fftw, hdf5, adios2, mpi, python, boost, py-numpy
Test Dependencies:
sofa-c
Description:
A suite of c++ libraries for radio astronomy data processing.

cask

Homepage:
Spack package:
Versions:
0.8.1, 0.7.4
Build Dependencies:
emacs
Run Dependencies:
emacs
Description:
Cask is a project management tool for Emacs Lisp to automate the package development cycle; development, dependencies, testing, building, packaging and more.

casper

Homepage:
Spack package:
Versions:
0.8.2
Build Dependencies:
jellyfish, boost
Link Dependencies:
jellyfish, boost
Description:
CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

cassandra

Homepage:
Spack package:
Versions:
4.0-alpha2, 4.0-alpha1, 3.11.6, 3.11.5
Build Dependencies:
java
Run Dependencies:
java
Description:
Apache Cassandra is a highly-scalable partitioned row store. Rows are organized into tables with a required primary key.

catalyst

Homepage:
Spack package:
Versions:
5.6.0, 5.5.2, 5.5.1, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.0, 5.1.2, 5.0.1, 4.4.0
Build Dependencies:
cmake, python, git, mpi, py-numpy, py-mpi4py, gl, osmesa, glx
Link Dependencies:
python, mpi, gl, osmesa, glx
Run Dependencies:
python, py-numpy, py-mpi4py
Description:
Catalyst is an in situ use case library, with an adaptable application programming interface (API), that orchestrates the alliance between simulation and analysis and/or visualization tasks.

catch2

Homepage:
Spack package:
Versions:
develop, 3.0.0-preview3, 2.13.7, 2.13.6, 2.13.5, 2.13.4, 2.13.3, 2.13.2, 2.13.1, 2.13.0, 2.12.4, 2.12.3, 2.12.1, 2.12.0, 2.11.3, 2.11.2, 2.11.1, 2.11.0, 2.10.2, 2.10.1, 2.10.0, 2.9.2, 2.9.1, 2.9.0, 2.8.0, 2.7.2, 2.7.1, 2.7.0, 2.6.1, 2.6.0, 2.5.0, 2.4.2, 2.4.1, 2.4.0, 2.3.0, 2.2.3, 2.2.2, 2.2.1, 2.1.0, 2.0.1, 1.12.1, 1.12.0, 1.11.0, 1.10.0, 1.9.7, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.8.1, 1.8.0, 1.7.2, 1.7.1, 1.7.0, 1.6.1, 1.6.0, 1.5.9, 1.5.0, 1.4.0, 1.3.5, 1.3.0
Build Dependencies:
cmake
Description:
Catch2 is a multi-paradigm test framework for C++, which also supports Objective-C (and maybe C).

cbc

Homepage:
Spack package:
Versions:
2.10.5
Build Dependencies:
gnuconfig, coinutils, osi, cgl
Link Dependencies:
coinutils, osi, cgl
Description:
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.

cbench

Homepage:
Spack package:
Versions:
1.3.0
Build Dependencies:
mpi, blas, lapack, fftw
Link Dependencies:
mpi, blas, lapack, fftw
Description:
Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.

cbflib

Homepage:
Spack package:
Versions:
0.9.2
Build Dependencies:
m4
Description:
CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files.

cblas

Homepage:
Spack package:
Versions:
2015-06-06
Build Dependencies:
blas
Link Dependencies:
blas
Description:
The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard building blocks for performing basic vector and matrix operations.

cbtf

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, boost, mrnet, xerces-c, libxml2
Link Dependencies:
rpcsvc-proto, libtirpc, boost, mrnet, xerces-c, libxml2
Description:
CBTF project contains the base code for CBTF that supports creating components, component networks and the support to connect these components and component networks into sequential and distributed network tools.

cbtf-argonavis

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Link Dependencies:
elfutils, boost, mrnet, cbtf, libmonitor, papi, cbtf-krell, cuda
Run Dependencies:
mrnet, cbtf, libmonitor, papi, cbtf-krell
Description:
CBTF Argo Navis project contains the CUDA collector and supporting libraries that was done as a result of a DOE SBIR grant.

cbtf-argonavis-gui

Homepage:
Spack package:
Versions:
develop, 1.3.0.0
Build Dependencies:
qt, cmake, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Link Dependencies:
qt, boost, mrnet, cbtf, cbtf-krell, cbtf-argonavis, cuda, openspeedshop-utils, xerces-c, graphviz, qtgraph
Description:
CBTF Argo Navis GUI project contains the GUI that views OpenSpeedShop performance information by loading in the Sqlite database files.

cbtf-krell

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, rpcsvc-proto, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, python, gotcha
Link Dependencies:
libtirpc, binutils, boost, dyninst, mrnet, xerces-c, cbtf, libmonitor, libunwind, papi, llvm-openmp-ompt, openmpi, mpich, mvapich2, mpt, gotcha
Run Dependencies:
mrnet, cbtf, libmonitor, papi, python
Description:
CBTF Krell project contains collector and runtime contributions to the CBTF project. These contributions include many performance data collectors and support libraries as well as some example tools that drive the data collection at HPC levels of scale.

cbtf-lanl

Homepage:
Spack package:
Versions:
develop, 1.9.4.1, 1.9.4, 1.9.3
Build Dependencies:
cmake, mrnet, xerces-c, cbtf, cbtf-krell
Link Dependencies:
mrnet, xerces-c, cbtf, cbtf-krell
Description:
CBTF LANL project contains a memory tool and data center type system command monitoring tool.

cc65

Homepage:
Spack package:
Versions:
2.18, 2.17, 2.16, 2.15, 2.14
Description:
cc65 is a complete cross development package for 65(C)02 systems, including a powerful macro assembler, a C compiler, linker, librarian and several other tools.

ccache

Homepage:
Spack package:
Versions:
4.4.2, 4.4.1, 4.4, 4.3, 4.2.1, 4.2, 4.1, 4.0, 3.7.11, 3.7.9, 3.7.1, 3.3.4, 3.3.3, 3.3.2, 3.3.1, 3.3, 3.2.9
Build Dependencies:
cmake, zstd, gperf, hiredis, libxslt, zlib
Link Dependencies:
zstd, gperf, hiredis, libxslt, zlib
Description:
ccache is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again.

ccfits

Homepage:
Spack package:
Versions:
2.6, 2.5, 2.4
Build Dependencies:
gnuconfig, cfitsio
Link Dependencies:
cfitsio
Description:
CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++. It is written in ANSI C++ and implemented using the C++ Standard Library with namespaces, exception handling, and member template functions.

ccls

Homepage:
Spack package:
Versions:
0.20201025
Build Dependencies:
cmake, llvm, rapidjson
Link Dependencies:
llvm, rapidjson
Description:
C/C++ language server

ccs-qcd

Homepage:
Spack package:
Versions:
master, 1.2.1
Build Dependencies:
mpi
Link Dependencies:
mpi
Description:
This program benchmarks the performance of a linear equation solver with a large sparse coefficient matrix appering in a lattice QCD probrem. Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks.

cctools

Homepage:
Spack package:
Versions:
7.2.10, 7.2.4, 7.2.3, 7.2.2, 7.2.1, 7.1.7, 7.1.5, 7.1.3, 7.1.2, 7.1.0, 7.0.18, 6.1.1
Build Dependencies:
gnuconfig, openssl, perl, python, readline, gettext, swig, zlib
Link Dependencies:
openssl, readline, gettext, swig, zlib
Run Dependencies:
perl, python
Description:
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

cdbfasta

Homepage:
Spack package:
Versions:
2017-03-16
Build Dependencies:
zlib
Link Dependencies:
zlib
Description:
Fast indexing and retrieval of fasta records from flat file databases

cdd

Homepage:
Spack package:
Versions:
0.61a
Build Dependencies:
libtool
Description:
The program cdd+ (cdd, respectively) is a C++ (ANSI C) implementation of the Double Description Method [MRTT53] for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron given by a system of linear inequalities

cddlib

Homepage:
Spack package:
Versions:
0.94m, 0.94h
Build Dependencies:
gnuconfig, gmp
Link Dependencies:
gmp
Description:
The C-library cddlib is a C implementation of the Double Description Method of Motzkin et al. for generating all vertices (i.e. extreme points) and extreme rays of a general convex polyhedron in R^d given by a system of linear inequalities

cdecimal

Homepage:
Spack package:
Versions:
2.3
Build Dependencies:
gnuconfig
Description:
cdecimal is a fast drop-in replacement for the decimal module in Python's standard library.

cdhit

Homepage:
Spack package:
Versions:
4.8.1, 4.6.8
Build Dependencies:
perl
Link Dependencies:
zlib
Run Dependencies:
perl
Description:
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.

cdo

Homepage:
Spack package:
Versions:
1.9.10, 1.9.9, 1.9.8, 1.9.7.1, 1.9.6, 1.9.5, 1.9.4, 1.9.3, 1.9.2, 1.9.1, 1.9.0, 1.8.2, 1.7.2
Build Dependencies:
gnuconfig, pkgconfig, netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Link Dependencies:
netcdf-c, hdf5, grib-api, eccodes, szip, udunits, libxml2, proj, curl, fftw-api, magics, uuid
Description:
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.

ceed

Homepage:
Spack package:
Versions:
4.0.0, 3.0.0, 2.0.0, 1.0.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, libceed, occa, nekrs, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, libceed, occa, nekrs, nek5000, nektools, gslib, nekbone, nekcem, petsc, hypre, hpgmg, magma, pumi, mfem, laghos, remhos, suite-sparse
Description:
Ceed is a collection of benchmarks, miniapps, software libraries and APIs for efficient high-order finite element and spectral element discretizations for exascale applications developed in the Department of Energy (DOE) and partially supported by the Exascale Computing Project (ECP). This is a Spack bundle package that installs the CEED software components.

cereal

Homepage:
Spack package:
Versions:
1.3.0, 1.2.2, 1.2.1, 1.2.0, 1.1.2, 1.1.1, 1.1.0, 1.0.0, 0.9.1
Build Dependencies:
cmake
Description:
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.

ceres-solver

Homepage:
Spack package:
Versions:
2.0.0, 1.14.0, 1.12.0
Build Dependencies:
cmake, eigen, lapack, glog
Link Dependencies:
eigen, lapack, glog
Description:
Ceres Solver is an open source C++ library for modeling and solving large, complicated optimization problems. It can be used to solve Non- linear Least Squares problems with bounds constraints and general unconstrained optimization problems. It is a mature, feature rich, and performant library that has been used in production at Google since 2010.

cfitsio

Homepage:
Spack package:
Versions:
4.0.0, 3.49, 3.48, 3.47, 3.45, 3.42, 3.41, 3.37
Build Dependencies:
gnuconfig, curl, bzip2
Link Dependencies:
curl, bzip2
Description:
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

cgal

Homepage:
Spack package:
Versions:
5.0.3, 5.0, 4.13, 4.12, 4.11, 4.9.1, 4.9, 4.7, 4.6.3
Build Dependencies:
cmake, boost, gmp, mpfr, zlib, qt, eigen
Link Dependencies:
boost, gmp, mpfr, zlib, qt, eigen
Description:
The Computational Geometry Algorithms Library (CGAL) is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. CGAL is used in various areas needing geometric computation, such as geographic information systems, computer aided design, molecular biology, medical imaging, computer graphics, and robotics.

cgdb

Homepage:
Spack package:
Versions:
0.7.0
Build Dependencies:
gnuconfig, ncurses, readline, flex, bison, texinfo
Link Dependencies:
ncurses, readline
Description:
A curses front-end to GDB

cgdcbxd

Homepage:
Spack package:
Versions:
1.0.2, 1.0.1
Build Dependencies:
gnuconfig, autoconf, automake, libtool, pkgconfig, libcgroup, libmnl
Link Dependencies:
libcgroup, libmnl
Description:
cgdcbxd is a daemon used to monitor DCB netlink events and manage the net_prio control group subsystem. The daemon keeps the hierarchy and priority mappings in sync with DCBX Application events

cget

Homepage:
Spack package:
Versions:
0.1.9
Build Dependencies:
python, py-setuptools, py-six, py-click, py-subprocess32
Run Dependencies:
python, py-six, py-click, py-subprocess32
Description:
Cmake package retrieval.

cgl

Homepage:
Spack package:
Versions:
0.60.3
Build Dependencies:
gnuconfig, coinutils, osi, clp
Link Dependencies:
coinutils, osi, clp
Description:
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.

cgm

Homepage:
Spack package:
Versions:
16.0, 13.1.1, 13.1.0, 13.1
Build Dependencies:
gnuconfig, mpi, oce
Link Dependencies:
mpi, oce
Description:
The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications.

cgns

Homepage:
Spack package:
Versions:
develop, master, 4.2.0, 4.1.2, 4.1.1, 4.1.0, 4.0.0, 3.4.1, 3.4.0, 3.3.1, 3.3.0
Build Dependencies:
cmake, hdf5, mpi
Link Dependencies:
hdf5, mpi
Description:
The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

chai

Homepage:
Spack package:
Versions:
develop, main, 2.4.0, 2.3.0, 2.2.2, 2.2.1, 2.2.0, 2.1.1, 2.1.0, 2.0.0, 1.2.0, 1.1.0, 1.0
Build Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, cmake, blt, umpire, raja
Link Dependencies:
llvm-amdgpu, hsa-rocr-dev, hip, cuda, umpire, raja
Description:
Copy-hiding array interface for data migration between memory spaces

changa

Homepage:
Spack package:
Versions:
master, 3.4
Build Dependencies:
gnuconfig, charmpp
Link Dependencies:
charmpp
Description:
ChaNGa (Charm N-body GrAvity solver) is a code to perform collisionless N-body simulations. It can perform cosmological simulations with periodic boundary conditions in comoving coordinates or simulations of isolated stellar systems. It also can include hydrodynamics using the Smooth Particle Hydrodynamics (SPH) technique. It uses a Barnes-Hut tree to calculate gravity, with hexadecapole expansion of nodes and Ewald summation for periodic forces. Timestepping is done with a leapfrog integrator with individual timesteps for each particle.

channelflow

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, eigen, fftw, mpi, hdf5, netcdf-c, boost
Link Dependencies:
eigen, fftw, mpi, hdf5, netcdf-c, boost
Description:
Channelflow is a software system for numerical analysis of the incompressible fluid flow in channel geometries, written in C++.

chapel

Homepage:
Spack package:
Versions:
1.24.1, 1.24.0, 1.23.0, 1.22.1, 1.22.0, 1.21.0, 1.20.0, 1.19.0, 1.18.0
Build Dependencies:
gnuconfig
Description:
Chapel is a modern programming language that is parallel, productive, portable, scalable and open-source.

chaplin

Homepage:
Spack package:
Versions:
1.2
Build Dependencies:
gnuconfig
Description:
The FORTRAN library CHAPLIN enables you to numerically evaluate Harmonic polylogarithms up to weight 4 for any complex argument.

charliecloud

Homepage:
Spack package:
Versions:
master, 0.25, 0.24, 0.23, 0.22, 0.21, 0.19, 0.18
Build Dependencies:
gnuconfig, m4, autoconf, automake, libtool, rsync, py-sphinx, py-sphinx-rtd-theme
Run Dependencies:
python, py-lark-parser, py-requests
Test Dependencies:
bats
Description:
Lightweight user-defined software stacks for HPC.

charmpp

Homepage:
Spack package:
Versions:
main, 6.10.2, 6.10.1, 6.10.0, 6.9.0, 6.8.2, 6.8.1, 6.8.0, 6.7.1, 6.7.0, 6.6.1, 6.6.0, 6.5.1
Build Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Link Dependencies:
mpi, papi, cuda, ucx, slurm, openmpi, automake, autoconf
Description:
Charm++ is a parallel programming framework in C++ supported by an adaptive runtime system, which enhances user productivity and allows programs to run portably from small multicore computers (your laptop) to the largest supercomputers.

chatterbug

Homepage:
Spack package:
Versions:
develop, 1.0
Build Dependencies:
mpi, scorep
Link Dependencies:
mpi, scorep
Description:
A suite of communication-intensive proxy applications that mimic commonly found communication patterns in HPC codes. These codes can be used as synthetic codes for benchmarking, or for trace generation using Score-P / OTF2.

check

Homepage:
Spack package:
Versions:
0.12.0, 0.11.0, 0.10.0
Build Dependencies:
gnuconfig
Description:
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.

chgcentre

Homepage:
Spack package:
Versions:
1.6
Build Dependencies:
cmake, casacore, gsl
Link Dependencies:
casacore, gsl
Description:
The chgcentre tool can be used to change the phase centre of a measurement set.

chill

Homepage:
Spack package:
Versions:
master, 0.3
Build Dependencies:
gnuconfig, boost, rose, autoconf, automake, libtool, m4, iegenlib, bison, flex, python, isl, gmp
Link Dependencies:
python
Run Dependencies:
rose, iegenlib
Description:
A polyheadral compiler for autotuning

chlorop

Homepage:
Spack package:
Versions:
1.1
Run Dependencies:
awk
Description:
Chlorop predicts the presence of chloroplast transit peptides in protein sequences and the location of potential cTP cleavage sites. You will need to obtain the tarball by visiting the URL and completing the form. You can then either run spack install with the tarball in the directory, or add it to a mirror. You will need to set the CHLOROTMP environment variable to the full path of the directory you want chlorop to use as a temporary directory.

chombo

Homepage:
Spack package:
Versions:
develop, 3.2
Build Dependencies:
blas, lapack, gmake, tcsh, mpi, hdf5
Link Dependencies:
blas, lapack, mpi, hdf5
Description:
The Chombo package provides a set of tools for implementing finite difference and finite-volume methods for the solution of partial differential equations on block-structured adaptively refined logically rectangular (i.e. Cartesian) grids.

chrony

Homepage:
Spack package:
Versions:
3.5.1, 3.5, 3.4, 3.3
Build Dependencies:
gnuconfig, ruby-asciidoctor, bison
Link Dependencies:
ruby-asciidoctor
Description:
chrony is a versatile implementation of the Network Time Protocol (NTP). It can synchronise the system clock with NTP servers, reference clocks(e.g. GPS receiver), and manual input using wristwatch and keyboard.

chrpath

Homepage:
Spack package:
Versions:
0.16
Build Dependencies:
gnuconfig
Description:
chrpath: Modifies the dynamic library load path (rpath and runpath) of compiled programs and libraries.

cinch

Homepage:
Spack package:
Versions:
master, 1.0
Description:
Cinch is a set of utilities and configuration options designed to make cmake builds easy to use and manage.

cistem

Homepage:
Spack package:
Versions:
1.0.0-beta
Build Dependencies:
gnuconfig, wxwidgets, fftw
Link Dependencies:
wxwidgets, fftw
Description:
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

citcoms

Homepage:
Spack package:
Versions:
master, 3.3.1, 3.2.0
Build Dependencies:
gnuconfig, mpi, zlib, automake, autoconf, libtool, m4, hc, cuda, hdf5
Link Dependencies:
mpi, zlib, hc, cuda, hdf5
Run Dependencies:
python
Description:
CitcomS is a finite element code designed to solve compressible thermochemical convection problems relevant to Earth's mantle.

cityhash

Homepage:
Spack package:
Versions:
master, 2013-07-31
Build Dependencies:
gnuconfig
Description:
CityHash, a family of hash functions for strings.

ck

Homepage:
Spack package:
Versions:
0.6.2, 0.6.1, 0.6.0, 0.5.2, 0.5.1, 0.5.0
Build Dependencies:
java, maven
Run Dependencies:
java
Description:
CK calculates class-level and metric-level code metrics in Java projects by means of static analysis (i.e. no need for compiled code).

clamav

Homepage:
Spack package:
Versions:
0.101.2
Build Dependencies:
gnuconfig, pkgconfig, json-c, openssl, pcre, yara, zlib, bzip2
Link Dependencies:
json-c, openssl, pcre, yara, zlib, bzip2, curl
Description:
Open source antivirus engine for detecting trojans, viruses, malware & other malicious threats.

clamr

Homepage:
Spack package:
Versions:
master
Build Dependencies:
cmake, mpi, mpe
Link Dependencies:
mpi, mpe
Description:
The CLAMR code is a cell-based adaptive mesh refinement (AMR) mini-app developed as a testbed for hybrid algorithm development using MPI and OpenCL GPU code.

clapack

Homepage:
Spack package:
Versions:
3.2.1
Build Dependencies:
atlas
Link Dependencies:
atlas
Description:
CLAPACK is a f2c'ed version of LAPACK. The CLAPACK library was built using a Fortran to C conversion utility called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain C code, and then modified to improve readability. CLAPACK's goal is to provide LAPACK for someone who does not have access to a Fortran compiler.

clara

Homepage:
Spack package:
Versions:
1.1.5, 1.1.4, 1.1.3, 1.1.2, 1.1.1, 1.1.0
Build Dependencies:
cmake
Description:
A simple to use, composable, command line parser for C++ 11 and beyond.

claw

Homepage:
Spack package:
Versions:
2.0.3, 2.0.2, 2.0.1, 2.0, 1.2.3, 1.2.2, 1.2.1, 1.2.0, 1.1.0
Build Dependencies:
cmake, ant, bison, flex, java, libxml2
Link Dependencies:
java, libxml2
Description:
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran. From a single source code, it generates architecture specific code decorated with OpenMP or OpenACC

cleaveland4

Homepage:
Spack package:
Versions:
4.4
Build Dependencies:
perl, perl-math-cdf, bowtie, viennarna, r, samtools
Link Dependencies:
bowtie, viennarna, samtools
Run Dependencies:
perl, perl-math-cdf, r
Description:
CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

cleverleaf

Homepage:
Spack package:
Versions:
develop
Build Dependencies:
cmake, samrai, hdf5, boost
Link Dependencies:
samrai, hdf5, boost
Description:
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National Laboratory. The primary goal of CleverLeaf is to evaluate the application of AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.

clfft

Homepage:
Spack package:
Versions:
2.12.2
Build Dependencies:
cmake, opencl, boost
Link Dependencies:
opencl, boost
Description:
a software library containing FFT functions written in OpenCL

clhep

Homepage:
Spack package:
Versions:
2.4.4.0, 2.4.1.3, 2.4.1.2, 2.4.1.0, 2.4.0.4, 2.4.0.2, 2.4.0.1, 2.4.0.0, 2.3.4.6, 2.3.4.5, 2.3.4.4, 2.3.4.3, 2.3.4.2, 2.3.3.2, 2.3.3.1, 2.3.3.0, 2.3.2.2, 2.3.1.1, 2.3.1.0, 2.3.0.0, 2.2.0.8, 2.2.0.5, 2.2.0.4
Build Dependencies:
cmake
Description:
CLHEP is a C++ Class Library for High Energy Physics.

cli11

Homepage:
Spack package:
Versions:
2.1.1, 2.1.0, 2.0.0, 1.9.1
Build Dependencies:
cmake
Description:
CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

clinfo

Homepage:
Spack package:
Versions:
2.2.18.04.06
Build Dependencies:
opencl
Link Dependencies:
opencl
Description:
Print all known information about all available OpenCL platforms and devices in the system.

clingo

Homepage:
Spack package:
Versions:
master, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python, py-cffi
Link Dependencies:
python
Run Dependencies:
python, py-cffi
Description:
Clingo: A grounder and solver for logic programs Clingo is part of the Potassco project for Answer Set Programming (ASP). ASP offers a simple and powerful modeling language to describe combinatorial problems as logic programs. The clingo system then takes such a logic program and computes answer sets representing solutions to the given problem.

clingo-bootstrap

Homepage:
Spack package:
Versions:
master, 5.5.0, 5.4.1, 5.4.0, 5.3.0, 5.2.2, spack
Build Dependencies:
cmake, doxygen, re2c, bison, python, py-cffi
Link Dependencies:
python
Run Dependencies:
python, py-cffi
Description:
Clingo with some options used for bootstrapping

cln

Homepage:
Spack package:
Versions:
master, 1.3.6, 1.3.5, 1.3.4, 1.3.3, 1.3.2, 1.3.1, 1.3.0, 1.2.2, 1.2.1, 1.2.0
Build Dependencies:
gnuconfig, autoconf, automake, libtool, m4, gmp, texinfo, gettext
Link Dependencies:
gmp
Description:
CLN is a library for efficient computations with all kinds of numbers in arbitrary precision. It features number classes for unlimited length integers, rationals, arbitrary precision floating point numbers and much more.